Mercurial > repos > mheinzl > variant_analyzer2

diff read2mut.py @ 68:4dfed0998184 draft

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planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8
author mheinzl
date Thu, 18 Mar 2021 10:58:59 +0000
parents 60e813039aae
children c44475567466
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--- a/read2mut.py	Thu Mar 18 10:42:19 2021 +0000
+++ b/read2mut.py	Thu Mar 18 10:58:59 2021 +0000
@@ -970,7 +970,7 @@
                             elif (all(int(ij) >= 1 for ij in [total1new_trim, total2new_trim, total3new_trim, total4new_trim]) &
                                   any(int(ij) >= 3 for ij in [total1new_trim, total4new_trim]) &
                                   any(int(ij) >= 3 for ij in [total2new_trim, total3new_trim]) &
-                                  all(float(ij) >= 0.75 for ij in [alt1ff, alt2ff, alt3ff, alt4ff])):
+                                  all(float(ij) >= 0.75 for ij in [alt1ff_trim, alt2ff_trim, alt3ff_trim, alt4ff_trim])):
                                 trimmed_actual_high_tier = True
                             elif ((all(int(ij) >= 1 for ij in [total1new_trim, total4new_trim]) &
                                    any(int(ij) >= 3 for ij in [total1new_trim, total4new_trim]) &