Mercurial > repos > mheinzl > variant_analyzer2
diff read2mut.py @ 76:56f271641828 draft
planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8
author | mheinzl |
---|---|
date | Fri, 26 Mar 2021 07:49:15 +0000 |
parents | 6ccff403db8a |
children | 1797e461d674 |
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--- a/read2mut.py Tue Mar 23 15:18:17 2021 +0000 +++ b/read2mut.py Fri Mar 26 07:49:15 2021 +0000 @@ -256,7 +256,7 @@ else: pure_tags_dict_short = pure_tags_dict - csv_data = open(outputFile_csv, "wb") + csv_data = open(outputFile_csv, "w") csv_writer = csv.writer(csv_data, delimiter=",") # output summary with threshold @@ -551,7 +551,7 @@ used_keys.append(key2[:-5]) counts_mut += 1 if (alt1f + alt2f + alt3f + alt4f) > 0.5: - total1new_trim, total2new_trim, total3new_trim, total4new_trim = total1new, total2new, total3new, total4new + total1new_trim, total2new_trim, total3new_trim, total4new_trim = total1new, total2new, total3new, total4new if total1new == 0: ref1f = alt1f = None alt1ff = -1