Mercurial > repos > mheinzl > variant_analyzer2

diff test-data/Variant_Analyzer_summary_test.csv @ 83:8cec772c0bf1 draft

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planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8-dirty
author mheinzl
date Fri, 05 Aug 2022 08:23:34 +0000
parents fdfe9a919ff7
children
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--- a/test-data/Variant_Analyzer_summary_test.csv	Wed Jul 27 08:59:00 2022 +0000
+++ b/test-data/Variant_Analyzer_summary_test.csv	Fri Aug 05 08:23:34 2022 +0000
@@ -1,10 +1,6 @@
 variant ID,tier,allele,tag,mate,read pos.ab,read pos.ba,read median length.ab,read median length.ba,DCS median length,FS.ab,FS.ba,FSqc.ab,FSqc.ba,ref.ab,ref.ba,alt.ab,alt.ba,rel. ref.ab,rel. ref.ba,rel. alt.ab,rel. alt.ba,na.ab,na.ba,lowq.ab,lowq.ba,trim.ab,trim.ba,SSCS alt.ab,SSCS alt.ba,SSCS ref.ab,SSCS ref.ba,in phase,chimeric tag
 ACH_TDII_5regions-505-C-A,2.1,alt,GATAACCTTGCTTCGTGATTAATC,ab1.ba2,132.0,131.0,264.0,263.0,173.0,1,3,1,3,0,0,1,3,0,0,1.0,1.0,0,0,0,0,0,0,2,1,1,1,,
 ,,,GATAACCTTGCTTCGTGATTAATC,ab2.ba1,,,,,173.0,0,0,0,0,0,0,0,0,,,,,0,0,0,0,0,0,2,1,1,1,,
-ACH_TDII_5regions-505-C-A,1.1,ref,GATTGGATAACGTTGTGGCAATTG,ab1.ba2,73.0,152.0,205.0,284.0,173.0,3,5,3,5,3,5,0,0,1.0,1.0,0,0,0,0,0,0,0,0,2,1,1,1,,
-,,,GATTGGATAACGTTGTGGCAATTG,ab2.ba1,198.0,198.0,263.5,283.0,173.0,4,3,4,3,4,3,0,0,1.0,1.0,0,0,0,0,0,0,0,0,2,1,1,1,,
-ACH_TDII_5regions-571-C-T,2.1,ref,GATAACCTTGCTTCGTGATTAATC,ab1.ba2,198.0,197.0,264.0,263.0,143.0,1,3,1,3,1,3,0,0,1.0,1.0,0,0,0,0,0,0,0,0,1,1,2,1,,
-,,,GATAACCTTGCTTCGTGATTAATC,ab2.ba1,,,,,143.0,0,0,0,0,0,0,0,0,,,,,0,0,0,0,0,0,1,1,2,1,,
 ACH_TDII_5regions-571-C-T,1.1,alt,GATTGGATAACGTTGTGGCAATTG,ab1.ba2,129.0,218.0,195.0,284.0,143.0,4,5,4,5,0,0,4,5,0,0,1.0,1.0,0,0,0,0,0,0,1,1,2,1,,
 ,,,GATTGGATAACGTTGTGGCAATTG,ab2.ba1,264.0,264.0,278.5,283.5,143.0,2,2,2,2,0,0,2,2,0,0,1.0,1.0,0,0,0,0,0,0,1,1,2,1,,
 ACH_TDII_5regions-958-T-C,2.4,alt,CCTCCCGGCAGTGCGAAAATGTCA,ab1.ba2,,,,,195.0,0,0,0,0,0,0,0,0,,,,,0,0,0,0,0,0,1,1,1,0,,