Mercurial > repos > mheinzl > variant_analyzer2
diff read2mut.py @ 42:da224c392a54 draft
planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8
| author | mheinzl |
|---|---|
| date | Wed, 24 Feb 2021 14:20:17 +0000 |
| parents | db3ed9202516 |
| children | d21960b45a6b |
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--- a/read2mut.py Wed Feb 24 13:14:28 2021 +0000 +++ b/read2mut.py Wed Feb 24 14:20:17 2021 +0000 @@ -60,9 +60,9 @@ parser.add_argument('--phred', type=int, default=20, help='Integer threshold for Phred score. Only reads higher than this threshold are considered. Default 20.') parser.add_argument('--trim5', type=int, default=10, - help='Integer threshold for assigning mutations at start of reads to lower tier. Default 10.') + help='Integer threshold for assigning mutations at the beginning of the reads to lower tier. Default 10.') parser.add_argument('--trim3', type=int, default=10, - help='Integer threshold for assigning mutations at end of reads to lower tier. Default 10.') + help='Integer threshold for assigning mutations at the end of the reads to lower tier. Default 10.') parser.add_argument('--chimera_correction', action="store_true", help='Count chimeric variants and correct the variant frequencies') return parser