Mercurial > repos > mheinzl > variant_analyzer2

diff mut2sscs.py @ 10:e18c5293aac7 draft

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planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8
author mheinzl
date Thu, 04 Feb 2021 09:01:43 +0000
parents ced1a529e7cd
children 84a1a3f70407
line wrap: on
line diff
--- a/mut2sscs.py	Thu Feb 04 08:57:57 2021 +0000
+++ b/mut2sscs.py	Thu Feb 04 09:01:43 2021 +0000
@@ -68,10 +68,10 @@
         stop_pos = variant.start
         #chrom_stop_pos = str(chrom) + "#" + str(stop_pos)
         ref = variant.REF
-        if len(variant.ALT) > 0:
+        if len(variant.ALT) == 0:
+            continue
+        else:
             alt = variant.ALT[0]
-        else:
-            alt = variant.ALT
         chrom_stop_pos = str(chrom) + "#" + str(stop_pos) + "#" + ref + "#" + alt
 
         if len(ref) == len(alt):