Mercurial > repos > mheinzl > variant_analyzer2
changeset 53:27b00e38e13d draft
planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8
| author | mheinzl |
|---|---|
| date | Thu, 11 Mar 2021 15:07:30 +0000 |
| parents | 49ecab32c83f |
| children | 95c27bcb1b7a |
| files | read2mut.py |
| diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
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--- a/read2mut.py Thu Mar 11 15:03:42 2021 +0000 +++ b/read2mut.py Thu Mar 11 15:07:30 2021 +0000 @@ -1073,7 +1073,7 @@ # move tier 4 counts to tier 2.5 if there other mutations with tier <= 2.4 print(list(sorted(tier_dict[key1].keys()))) print(list(sorted(tier_dict[key1].keys()))[:6]) - sum_highTiers = sum([tier_dict[key1][ij] for ij in list(tier_dict[key1].keys())[:6]]) + sum_highTiers = sum([tier_dict[key1][ij] for ij in list(sorted(tier_dict[key1].keys()))[:6]]) print(sum_highTiers) if tier_dict[key1]["tier 4"] > 0 and sum_highTiers > 0: tier_dict[key1]["tier 2.5"] = tier_dict[key1]["tier 4"]