Mercurial > repos > mheinzl > variant_analyzer2
changeset 76:56f271641828 draft
planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8
| author | mheinzl |
|---|---|
| date | Fri, 26 Mar 2021 07:49:15 +0000 |
| parents | 6ccff403db8a |
| children | 1797e461d674 |
| files | read2mut.py read2mut.xml |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/read2mut.py Tue Mar 23 15:18:17 2021 +0000 +++ b/read2mut.py Fri Mar 26 07:49:15 2021 +0000 @@ -256,7 +256,7 @@ else: pure_tags_dict_short = pure_tags_dict - csv_data = open(outputFile_csv, "wb") + csv_data = open(outputFile_csv, "w") csv_writer = csv.writer(csv_data, delimiter=",") # output summary with threshold @@ -551,7 +551,7 @@ used_keys.append(key2[:-5]) counts_mut += 1 if (alt1f + alt2f + alt3f + alt4f) > 0.5: - total1new_trim, total2new_trim, total3new_trim, total4new_trim = total1new, total2new, total3new, total4new + total1new_trim, total2new_trim, total3new_trim, total4new_trim = total1new, total2new, total3new, total4new if total1new == 0: ref1f = alt1f = None alt1ff = -1
--- a/read2mut.xml Tue Mar 23 15:18:17 2021 +0000 +++ b/read2mut.xml Fri Mar 26 07:49:15 2021 +0000 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="read2mut" name="Call specific mutations in reads:" version="2.1.3" profile="19.01"> +<tool id="read2mut" name="Call specific mutations in reads:" version="2.1.4" profile="19.01"> <description>Looks for reads with mutation at known positions and calculates frequencies and stats.</description> <macros> <import>va_macros.xml</import>