Mercurial > repos > mheinzl > variant_analyzer2

changeset 62:66c1245436b9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8
author mheinzl
date Wed, 17 Mar 2021 13:24:40 +0000
parents 3722268ffac5
children f0fc93b7945c
files read2mut.py read2mut.xml
diffstat 2 files changed, 1 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/read2mut.py	Wed Mar 17 13:14:40 2021 +0000
+++ b/read2mut.py	Wed Mar 17 13:24:40 2021 +0000
@@ -1152,10 +1152,6 @@
                         #                        'criteria': '=$B${}>="3"'.format(row + 1),
                         #                        'format': format2,
                         #                        'multi_range': 'L{}:M{} T{}:U{} B{}'.format(row + 1, row + 2, row + 1, row + 2, row + 1, row + 2)})
-                        #if trimmed:
-                        #if key1 not in list(change_tier_after_print.keys()):
-                        #    change_tier_after_print[key1] = [((row, line, line2))]
-                        #else:
                         change_tier_after_print.append((row, line, line2, trimmed_actual_high_tier))
 
                         row += 3
--- a/read2mut.xml	Wed Mar 17 13:14:40 2021 +0000
+++ b/read2mut.xml	Wed Mar 17 13:24:40 2021 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<tool id="read2mut" name="Call specific mutations in reads:" version="2.1.1" profile="19.01">
+<tool id="read2mut" name="Call specific mutations in reads:" version="2.1.2" profile="19.01">
     <description>Looks for reads with mutation at known positions and calculates frequencies and stats.</description>
     <macros>
         <import>va_macros.xml</import>