Mercurial > repos > mheinzl > variant_analyzer2

changeset 65:712a37137b1f draft

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planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8
author mheinzl
date Thu, 18 Mar 2021 10:21:12 +0000
parents fd342f5a97d9
children d20be7e66378
files read2mut.py
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/read2mut.py	Thu Mar 18 10:14:24 2021 +0000
+++ b/read2mut.py	Thu Mar 18 10:21:12 2021 +0000
@@ -971,10 +971,10 @@
                                   any(int(ij) >= 3 for ij in [total1new_trim, total4new_trim]) &
                                   any(int(ij) >= 3 for ij in [total2new_trim, total3new_trim]) &
                                   all(float(ij) >= 0.75 for ij in [alt1ff, alt2ff, alt3ff, alt4ff])):
-                        	    trimmed_actual_high_tier = True
-                        	elif ((all(int(ij) >= 1 for ij in [total1new_trim, total4new_trim]) &
-                        	       any(int(ij) >= 3 for ij in [total1new_trim, total4new_trim]) &
-                        	       all(float(ij) >= 0.75 for ij in [alt1ff_trim, alt4ff_trim])) |
+                                trimmed_actual_high_tier = True
+                            elif ((all(int(ij) >= 1 for ij in [total1new_trim, total4new_trim]) &
+                                   any(int(ij) >= 3 for ij in [total1new_trim, total4new_trim]) &
+                                   all(float(ij) >= 0.75 for ij in [alt1ff_trim, alt4ff_trim])) |
                                   (all(int(ij) >= 1 for ij in [total2new_trim, total3new_trim]) &
                                    any(int(ij) >= 3 for ij in [total2new_trim, total3new_trim]) &
                                    all(float(ij) >= 0.75 for ij in [alt2ff_trim, alt3ff_trim]))):