Mercurial > repos > michal_klinka > trtools

annotate DumpSTR/test-data/test_result.vcf @ 1:8e8cf43f6836 draft default tip

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planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit df706bf76531920d935ec6d2eb41b9b1420aa390
author michal_klinka
date Sun, 15 May 2022 15:23:59 +0000
parents ecf8c4f9f8ba
children
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ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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1 ##fileformat=VCFv4.1
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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2 ##FILTER=<ID=PASS,Description="All filters passed">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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3 ##command=HipSTR-v0.6.2 --bams /gymreklab-tscc/resources/datasets/platinum_genome/bam/NA12891.bam --fasta /storage/resources/dbase/human/hg19/hg19.fa --regions gangstr_ref_13_hipstrformat.bed --chrom chr21 --str-vcf NA12891.gangref.chr21.vcf.gz --min-reads 10
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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4 ##reference=/storage/resources/dbase/human/hg19/hg19.fa
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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5 ##contig=<ID=chr1,length=249250621>
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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6 ##contig=<ID=chr2,length=243199373>
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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7 ##contig=<ID=chr3,length=198022430>
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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8 ##contig=<ID=chr4,length=191154276>
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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9 ##contig=<ID=chr5,length=180915260>
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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10 ##contig=<ID=chr6,length=171115067>
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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11 ##contig=<ID=chr7,length=159138663>
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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12 ##contig=<ID=chr8,length=146364022>
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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13 ##contig=<ID=chr9,length=141213431>
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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14 ##contig=<ID=chr10,length=135534747>
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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15 ##contig=<ID=chr11,length=135006516>
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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16 ##contig=<ID=chr12,length=133851895>
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17 ##contig=<ID=chr13,length=115169878>
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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18 ##contig=<ID=chr14,length=107349540>
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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19 ##contig=<ID=chr15,length=102531392>
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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20 ##contig=<ID=chr16,length=90354753>
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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21 ##contig=<ID=chr17,length=81195210>
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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22 ##contig=<ID=chr18,length=78077248>
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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23 ##contig=<ID=chr19,length=59128983>
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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24 ##contig=<ID=chr20,length=63025520>
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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25 ##contig=<ID=chr21,length=48129895>
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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26 ##contig=<ID=chr22,length=51304566>
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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27 ##contig=<ID=chrX,length=155270560>
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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28 ##contig=<ID=chrY,length=59373566>
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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29 ##contig=<ID=chrM,length=16571>
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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30 ##INFO=<ID=INFRAME_PGEOM,Number=1,Type=Float,Description="Parameter for in-frame geometric step size distribution">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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31 ##INFO=<ID=INFRAME_UP,Number=1,Type=Float,Description="Probability that stutter causes an in-frame increase in obs. STR size">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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32 ##INFO=<ID=INFRAME_DOWN,Number=1,Type=Float,Description="Probability that stutter causes an in-frame decrease in obs. STR size">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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33 ##INFO=<ID=OUTFRAME_PGEOM,Number=1,Type=Float,Description="Parameter for out-of-frame geometric step size distribution">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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34 ##INFO=<ID=OUTFRAME_UP,Number=1,Type=Float,Description="Probability that stutter causes an out-of-frame increase in read's STR size">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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35 ##INFO=<ID=OUTFRAME_DOWN,Number=1,Type=Float,Description="Probability that stutter causes an out-of-frame decrease in read's STR size">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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36 ##INFO=<ID=BPDIFFS,Number=A,Type=Integer,Description="Base pair difference of each alternate allele from the reference allele">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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37 ##INFO=<ID=START,Number=1,Type=Integer,Description="Inclusive start coodinate for the repetitive portion of the reference allele">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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38 ##INFO=<ID=END,Number=1,Type=Integer,Description="Inclusive end coordinate for the repetitive portion of the reference allele">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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39 ##INFO=<ID=PERIOD,Number=1,Type=Integer,Description="Length of STR motif">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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40 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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41 ##INFO=<ID=REFAC,Number=1,Type=Integer,Description="Reference allele count">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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42 ##INFO=<ID=AC,Number=A,Type=Integer,Description="Alternate allele counts">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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43 ##INFO=<ID=NSKIP,Number=1,Type=Integer,Description="Number of samples not genotyped due to various issues">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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44 ##INFO=<ID=NFILT,Number=1,Type=Integer,Description="Number of samples whose genotypes were filtered due to various issues">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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45 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total number of valid reads used to genotype all samples">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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46 ##INFO=<ID=DSNP,Number=1,Type=Integer,Description="Total number of reads with SNP phasing information">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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47 ##INFO=<ID=DSTUTTER,Number=1,Type=Integer,Description="Total number of reads with a stutter indel in the STR region">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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48 ##INFO=<ID=DFLANKINDEL,Number=1,Type=Integer,Description="Total number of reads with an indel in the regions flanking the STR">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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49 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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50 ##FORMAT=<ID=GB,Number=1,Type=String,Description="Base pair differences of genotype from reference">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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51 ##FORMAT=<ID=Q,Number=1,Type=Float,Description="Posterior probability of unphased genotype">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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52 ##FORMAT=<ID=PQ,Number=1,Type=Float,Description="Posterior probability of phased genotype">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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53 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Number of valid reads used for sample's genotype">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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54 ##FORMAT=<ID=DSNP,Number=1,Type=Integer,Description="Number of reads with SNP phasing information">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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55 ##FORMAT=<ID=PSNP,Number=1,Type=String,Description="Number of reads with SNPs supporting each haploid genotype">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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56 ##FORMAT=<ID=PDP,Number=1,Type=String,Description="Fractional reads supporting each haploid genotype">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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57 ##FORMAT=<ID=GLDIFF,Number=1,Type=Float,Description="Difference in likelihood between the reported and next best genotypes">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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58 ##FORMAT=<ID=DSTUTTER,Number=1,Type=Integer,Description="Number of reads with a stutter indel in the STR region">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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59 ##FORMAT=<ID=DFLANKINDEL,Number=1,Type=Integer,Description="Number of reads with an indel in the regions flanking the STR">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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60 ##FORMAT=<ID=AB,Number=1,Type=Float,Description="log10 of the allele bias pvalue, where 0 is no bias and more negative values are increasingly biased. 0 for all homozygous genotypes">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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61 ##FORMAT=<ID=FS,Number=1,Type=Float,Description="log10 of the strand bias pvalue from Fisher's exact test, where 0 is no bias and more negative values are increasingly biased. 0 for all homozygous genotypes">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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62 ##FORMAT=<ID=DAB,Number=1,Type=Integer,Description="Number of reads used in the AB and FS calculations">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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63 ##FORMAT=<ID=ALLREADS,Number=1,Type=String,Description="Base pair difference observed in each read's Needleman-Wunsch alignment">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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64 ##FORMAT=<ID=MALLREADS,Number=1,Type=String,Description="Maximum likelihood bp diff in each read based on haplotype alignments for reads that span the repeat region by at least 5 base pairs">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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65 ##FORMAT=<ID=FILTER,Number=1,Type=String,Description="call-level filters that have been applied">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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66 ##INFO=<ID=HET,Number=1,Type=Float,Description="Heterozygosity">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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67 ##INFO=<ID=HWEP,Number=1,Type=Float,Description="HWE p-value for obs. vs. exp het rate">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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68 ##INFO=<ID=HRUN,Number=1,Type=Integer,Description="Length of longest homopolymer run">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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69 ##FILTER=<ID=NO_CALLS_REMAINING,Description="All calls at this locus were already nocalls or were individually filtered before the locus level filters were applied.">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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70 ##FILTER=<ID=CALLRATE0.1,Description="">
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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71 ##command-DumpSTR=/home/xklinka/Programs/miniconda3/bin/dumpSTR --vcf NA12891_chr21_hipstr.sorted.vcf.gz --vcftype hipstr --out test_result --min-locus-callrate 0.1 --use-length --drop-filtered --hipstr-max-call-flank-indel 0.2 --hipstr-min-call-Q 0.4
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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72 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA12891
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
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parents:
diff changeset
73 chr21 9432567 GANGSTR_436661 CTACAGCTACAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9432567;END=9432578;PERIOD=6;NSKIP=0;NFILT=0;DP=202;DSNP=0;DSTUTTER=0;DFLANKINDEL=9;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:202:0:0:9:90.54|111.46:0|0:.:0:.:0:0|131:0|129:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
74 chr21 9434394 GANGSTR_436662 AATAAATAAATAAATAAATAAATAAATAAATAAATA AATAAATAAATAAATAAATAAATAAATAAATA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.23;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9434394;END=9434429;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=269;DSNP=0;DSTUTTER=48;DFLANKINDEL=5;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:269:0:48:5:121.64|147.36:0|0:37.21:-1.01:177:-0.06:-20|1;-9|1;-8|1;-4|50;-2|1;0|38;4|18:-8|3;-4|44;0|37;4|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
75 chr21 9442752 GANGSTR_436665 ATGAAATGAA . . . INFRAME_PGEOM=1;INFRAME_UP=0;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9442752;END=9442761;PERIOD=5;NSKIP=0;NFILT=0;DP=312;DSNP=0;DSTUTTER=4;DFLANKINDEL=14;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:312:0:4:14:156.00|156.00:0|0:.:0:.:0:-18|13;-5|1;0|232:-5|1;0|231:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
76 chr21 9447827 GANGSTR_436670 GGATATATATATATATATAT GTATATATATATATATATAT . . INFRAME_PGEOM=0.39;INFRAME_UP=0.02;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9447829;END=9447846;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=136;DSNP=0;DSTUTTER=13;DFLANKINDEL=6;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:136:0:13:6:85.18|50.82:0|0:88.48:-2.49:112:-3.12:-52|1;-18|1;-10|2;-2|6;0|71;16|2;18|2:-10|2;-2|5;0|61;12|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
77 chr21 9455617 GANGSTR_436671 TTGTTTGTTTGT . . . INFRAME_PGEOM=1;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9455617;END=9455628;PERIOD=4;NSKIP=0;NFILT=0;DP=255;DSNP=0;DSTUTTER=1;DFLANKINDEL=13;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:255:0:1:13:106.74|148.26:0|0:.:0:.:0:-4|1;0|186:-4|1;0|174:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
78 chr21 9455710 GANGSTR_436672 TATATGGTATATGGTATATGG TATATGGTATGTGGTATATGG . . INFRAME_PGEOM=0.98;INFRAME_UP=0.01;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9455710;END=9455730;PERIOD=7;NSKIP=0;NFILT=0;BPDIFFS=0;DP=363;DSNP=0;DSTUTTER=13;DFLANKINDEL=7;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:363:0:13:7:301.35|61.65:0|0:13.91:-55.52:299:-2.53:-7|11;0|162:-7|10;0|172:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
79 chr21 9456783 GANGSTR_436673 TAAAAATAAAAATAAAAA . . . INFRAME_PGEOM=0.98;INFRAME_UP=0;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.99;OUTFRAME_UP=0;OUTFRAME_DOWN=0.02;START=9456783;END=9456800;PERIOD=6;NSKIP=0;NFILT=0;DP=412;DSNP=0;DSTUTTER=6;DFLANKINDEL=40;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:412:0:6:40:206.00|206.00:0|0:.:0:.:0:-6|5;-1|3;0|236:-6|5;0|216:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
80 chr21 9467572 GANGSTR_436674 ACACACACACAC ATACACACACAC . . INFRAME_PGEOM=0.43;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9467572;END=9467583;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=405;DSNP=0;DSTUTTER=108;DFLANKINDEL=25;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:405:0:108:25:144.01|260.99:0|0:334.98:-9.51:352:-5.37:-4|1;-2|6;0|246;4|48;8|1;10|9:-2|6;0|185;2|30;4|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
81 chr21 9468277 GANGSTR_436675 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9468277;END=9468288;PERIOD=4;NSKIP=0;NFILT=0;DP=282;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:282:0:0:1:164.50|117.50:0|0:.:0:.:0:0|204;2|1:0|200:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
82 chr21 9474675 GANGSTR_436678 GTTTTGTTTTGTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9474675;END=9474689;PERIOD=5;NSKIP=0;NFILT=0;DP=160;DSNP=0;DSTUTTER=0;DFLANKINDEL=6;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:160:0:0:6:102.91|57.09:0|0:.:0:.:0:0|85:0|85:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
83 chr21 9477000 GANGSTR_436679 AATAATAATAATATGTG AATAATAATAATATGTT,AATAATAATGATATGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9477000;END=9477011;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0,0;DP=168;DSNP=0;DSTUTTER=2;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:0|0:1:0.5:168:0:2:2:65.57|102.43:0|0:85.66:-1.93:143:-0.22:0|122:0|116:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
84 chr21 9487190 GANGSTR_436682 TATGGAGAGAGAGAGAGAGAGAGAGAGAGA TATGGAGAGAGAGAGAGAGAGAGA,TGTGGAGAGAGAGAGAGAGAGAGA . . INFRAME_PGEOM=0.6;INFRAME_UP=0.39;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9487194;END=9487219;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6,-6;DP=271;DSNP=0;DSTUTTER=104;DFLANKINDEL=5;AN=2;REFAC=0;AC=1,1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-6|-6:1:0.5:271:0:104:5:177.23|93.77:0|0:121.5:-7.76:222:-1.38:-38|1;-23|1;-10|1;-8|6;-6|78;-4|32;-2|3;0|24;2|1;4|23;6|6;10|1:-8|5;-6|68;-4|30;-2|2;0|24;2|1;4|20;6|5:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
85 chr21 9488003 GANGSTR_436683 TGTGTGTGTG . . . INFRAME_PGEOM=0.99;INFRAME_UP=0.01;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9488003;END=9488012;PERIOD=2;NSKIP=0;NFILT=0;DP=224;DSNP=0;DSTUTTER=5;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:224:0:5:0:112.00|112.00:0|0:.:0:.:0:-2|4;0|167:-2|3;0|150:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
86 chr21 9489775 GANGSTR_436685 TATGTATGTAT TATGTATGTAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9489775;END=9489782;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=116;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:116:0:0:0:72.48|43.52:0|0:138.52:-2.22:105:-0.19:0|86:0|84:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
87 chr21 9500096 GANGSTR_436686 ATAATAATAATAATAATAATAAA ATAATAATAATAATAATAAA,ATAATAATAATAATAATAAT . . INFRAME_PGEOM=1;INFRAME_UP=0.01;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.02;START=9500096;END=9500116;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3,-3;DP=173;DSNP=0;DSTUTTER=8;DFLANKINDEL=8;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-3|-3:1:0.5:173:0:8:8:104.52|68.48:0|0:118.09:-2.22:173:-7.3:-6|1;-4|1;-3|110:-6|2;-3|100:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
88 chr21 9501849 GANGSTR_436687 ATATATATATATATACAC AATATATATAT . . INFRAME_PGEOM=0.63;INFRAME_UP=0.01;INFRAME_DOWN=0.27;OUTFRAME_PGEOM=0.74;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.05;START=9501849;END=9501862;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-7;DP=168;DSNP=0;DSTUTTER=42;DFLANKINDEL=21;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-7:1:0.5:168:0:42:21:94.91|73.09:0|0:237.44:-1.06:165:-0.2:-9|1;-8|6;-7|49;-6|2;-4|18;-3|2;-2|12;0|38:-15|1;-9|2;-7|52;-5|1;-4|17;-2|13;0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
89 chr21 9502317 GANGSTR_436688 TTCTCTTTCTCTTTCTCTAAAGT TTCTCTTTCTCTTTCTCTAAAGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9502317;END=9502334;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=0;DP=124;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:124:0:0:0:82.95|41.05:0|0:92.35:-4.49:100:-2.89:0|71:0|74:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
90 chr21 9519030 GANGSTR_436690 AAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9519030;END=9519037;PERIOD=4;NSKIP=0;NFILT=0;DP=181;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:181:0:0:0:90.50|90.50:0|0:.:0:.:0:0|142:0|138:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
91 chr21 9522213 GANGSTR_436691 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9522213;END=9522224;PERIOD=4;NSKIP=0;NFILT=0;DP=186;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:186:0:0:1:93.00|93.00:0|0:.:0:.:0:0|139:0|134:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
92 chr21 9531868 GANGSTR_436692 ATAGATAGATAGATAGATAG ACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG,ACAGATAGATAGATAGATAGATAGATAGGTAGATAGATAGATAGATAGATAG . . INFRAME_PGEOM=1;INFRAME_UP=0.01;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.99;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.02;START=9531868;END=9531887;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=28,32;DP=230;DSNP=0;DSTUTTER=27;DFLANKINDEL=3;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 2|1:32|28:1:0.5:230:0:27:3:109.31|120.69:0|0:138.06:-0.44:146:-0.3:-14|2;-5|18;-1|20;0|85;3|18;28|3;32|5:28|14;32|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
93 chr21 9534565 GANGSTR_436693 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9534565;END=9534576;PERIOD=2;NSKIP=0;NFILT=0;DP=173;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:173:0:0:0:88.00|85.00:0|0:.:0:.:0:0|138:0|123:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
94 chr21 9536938 GANGSTR_436694 TGGAATGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9536938;END=9536947;PERIOD=5;NSKIP=0;NFILT=0;DP=169;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:169:0:0:1:84.50|84.50:0|0:.:0:.:0:0|119:0|119:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
95 chr21 9542893 GANGSTR_436695 GTGGGGTGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9542893;END=9542902;PERIOD=5;NSKIP=0;NFILT=0;DP=144;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:144:0:0:0:72.00|72.00:0|0:.:0:.:0:0|105:0|105:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
96 chr21 9544689 GANGSTR_436697 CCCAGACCCAGACCCA CCCAGACCCAGACCCT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9544689;END=9544700;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=0;DP=185;DSNP=0;DSTUTTER=1;DFLANKINDEL=3;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:185:0:1:3:142.63|42.37:0|0:41.07:-17.55:142:-0.46:-6|3;0|112:0|112:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
97 chr21 9545997 GANGSTR_436699 CCCTGCCCCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.16;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.04;START=9545997;END=9546008;PERIOD=6;NSKIP=0;NFILT=0;DP=153;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:153:0:0:4:80.20|72.80:0|0:.:0:.:0:-17|1;-11|3;0|104:0|104:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
98 chr21 9546720 GANGSTR_436701 CTGGCCCTGGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9546720;END=9546731;PERIOD=6;NSKIP=0;NFILT=0;DP=138;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:138:0:0:1:69.00|69.00:0|0:.:0:.:0:0|87:0|93:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
99 chr21 9549157 GANGSTR_436703 TGACCCTGACCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9549157;END=9549168;PERIOD=6;NSKIP=0;NFILT=0;DP=164;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:164:0:0:1:82.00|82.00:0|0:.:0:.:0:0|116:0|117:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
100 chr21 9549337 GANGSTR_436704 GCCCTGCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9549337;END=9549346;PERIOD=5;NSKIP=0;NFILT=0;DP=146;DSNP=0;DSTUTTER=2;DFLANKINDEL=9;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:146:0:2:9:73.00|73.00:0|0:.:0:.:0:-16|7;-5|1;0|101:-15|2;0|100:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
101 chr21 9550373 GANGSTR_436705 TAAATAAATAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9550373;END=9550392;PERIOD=4;NSKIP=0;NFILT=0;DP=193;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:193:0:1:0:89.00|104.00:0|0:.:0:.:0:0|106:0|103:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
102 chr21 9553568 GANGSTR_436708 TGAAATGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9553568;END=9553577;PERIOD=5;NSKIP=0;NFILT=0;DP=208;DSNP=0;DSTUTTER=7;DFLANKINDEL=10;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:208:0:7:10:104.00|104.00:0|0:.:0:.:0:-47|1;-14|1;-3|1;0|142:0|141;5|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
103 chr21 9569046 GANGSTR_436711 TATATATATATATATA TGTATATATGTGTATATATATA . . INFRAME_PGEOM=0.69;INFRAME_UP=0.28;INFRAME_DOWN=0.18;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=9569046;END=9569061;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6;DP=51;DSNP=0;DSTUTTER=13;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|6:1:0.5:51:0:13:0:35.52|15.48:0|0:105.44:-2.84:41:0:-11|2;-7|4;-5|3;-2|5;0|14;2|4;6|3:-2|5;0|14;2|4;6|5:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
104 chr21 9573523 GANGSTR_436712 AATCAATCAATCATTAA AATAAATCAATCATT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9573523;END=9573534;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=222;DSNP=0;DSTUTTER=0;DFLANKINDEL=32;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:222:0:0:32:188.74|33.26:0|0:21.12:-26.18:215:0:-5|26;0|145:-2|23;0|132:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
105 chr21 9573928 GANGSTR_436713 AAACAAACAAAC AAACAAACAAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.02;START=9573928;END=9573939;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=125;DSNP=0;DSTUTTER=0;DFLANKINDEL=13;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:125:0:0:13:103.39|21.61:0|0:32.52:-14.83:114:-1.26:-1|1;0|92:0|90:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
106 chr21 9579664 GANGSTR_436714 TTTGATTTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9579664;END=9579673;PERIOD=5;NSKIP=0;NFILT=0;DP=122;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:122:0:0:2:61.00|61.00:0|0:.:0:.:0:0|91:0|91:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
107 chr21 9584264 GANGSTR_436716 TGAATTTATTTATTT TCAATTTATTTATTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9584267;END=9584278;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=216;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:216:0:0:0:133.95|82.05:0|0:255.24:-3.54:200:-0.11:0|158:0|155:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
108 chr21 9585397 GANGSTR_436717 TGGAGTGGAG TGCAGTGGAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9585397;END=9585406;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=142;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:142:0:0:1:122.97|19.03:0|0:12.5:-21.81:128:-1.19:0|103:0|102:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
109 chr21 9593840 GANGSTR_436719 CTGCTGCTGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9593840;END=9593851;PERIOD=3;NSKIP=0;NFILT=0;DP=186;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:186:0:0:2:105.58|80.42:0|0:.:0:.:0:0|138:0|133:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
110 chr21 9649917 GANGSTR_436720 TATCTTATCT . . . INFRAME_PGEOM=0.96;INFRAME_UP=0.01;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9649917;END=9649926;PERIOD=5;NSKIP=0;NFILT=0;DP=137;DSNP=0;DSTUTTER=6;DFLANKINDEL=6;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:137:0:6:6:68.50|68.50:0|0:.:0:.:0:-5|6;0|88:-5|6;0|87:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
111 chr21 9652274 GANGSTR_436721 TTTGGTTTGGTTTGGTCT TTTGGTTTGGTTTGGTCTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.13;OUTFRAME_DOWN=0.08;START=9652274;END=9652288;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=1;DP=184;DSNP=0;DSTUTTER=2;DFLANKINDEL=16;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|1:1:0.5:184:0:2:16:146.19|37.81:0|0:32.19:-20.66:145:0:-18|1;-1|13;0|108;1|16;2|1:0|108;1|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
112 chr21 9663930 GANGSTR_436722 AGCAAGCAAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9663930;END=9663941;PERIOD=4;NSKIP=0;NFILT=0;DP=124;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:124:0:0:1:62.00|62.00:0|0:.:0:.:0:0|77:0|73:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
113 chr21 9668173 GANGSTR_436723 TTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.36;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.05;START=9668173;END=9668182;PERIOD=5;NSKIP=0;NFILT=0;DP=168;DSNP=0;DSTUTTER=1;DFLANKINDEL=22;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:168:0:1:22:84.00|84.00:0|0:.:0:.:0:-7|4;-6|1;-1|2;0|117;1|3;3|2:0|118:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
114 chr21 9669543 GANGSTR_436724 TGTGTGTGTGTGTAA TGTGTGTGTGTGTAC . . INFRAME_PGEOM=1;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9669543;END=9669554;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=194;DSNP=0;DSTUTTER=2;DFLANKINDEL=17;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:194:0:2:17:131.46|62.54:0|0:178.91:-6.64:177:-0.13:-2|1;0|163:-2|1;0|148:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
115 chr21 9676788 GANGSTR_436726 AAAATAAAATAAAAT AAATAAAATAAAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.68;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=9676788;END=9676802;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=159;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:159:0:0:4:100.61|58.39:0|0:108.44:-4:119:-0.08:-3|2;-2|1;-1|32;0|62:-1|33;0|62:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
116 chr21 9694646 GANGSTR_436727 TTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9694646;END=9694653;PERIOD=4;NSKIP=0;NFILT=0;DP=114;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:114:0:0:0:57.00|57.00:0|0:.:0:.:0:0|92:0|88:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
117 chr21 9706341 GANGSTR_436730 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.99;INFRAME_UP=0.04;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.39;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.05;START=9706341;END=9706352;PERIOD=3;NSKIP=0;NFILT=0;DP=234;DSNP=0;DSTUTTER=30;DFLANKINDEL=7;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:234:0:30:7:119.66|114.34:0|0:.:0:.:0:-4|7;-3|14;-1|1;0|144;3|7:-3|19;0|139;3|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
118 chr21 9707598 GANGSTR_436731 TTGTTGTTGTTGTTGTTGTTG TTGTTGTTGTTGTTGTTG,TTGTTGTTGTTGTTGTTGTCGTTG . . INFRAME_PGEOM=0.91;INFRAME_UP=0.04;INFRAME_DOWN=0.22;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=9707598;END=9707618;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3,3;DP=98;DSNP=0;DSTUTTER=18;DFLANKINDEL=3;AN=2;REFAC=0;AC=1,1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-3|3:1:0.5:98:0:18:3:55.52|42.48:0|0:10.44:-1.22:82:-1.44:-6|5;-3|27;0|9;3|20:-6|2;-3|23;0|9;3|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
119 chr21 9719169 GANGSTR_436732 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.98;INFRAME_UP=0.01;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9719169;END=9719180;PERIOD=4;NSKIP=0;NFILT=0;DP=179;DSNP=0;DSTUTTER=7;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:179:0:7:5:98.52|80.48:0|0:.:0:.:0:-4|4;-3|1;0|98:-4|5;0|93:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
120 chr21 9739491 GANGSTR_436733 TTAAATTAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9739491;END=9739500;PERIOD=5;NSKIP=0;NFILT=0;DP=166;DSNP=0;DSTUTTER=0;DFLANKINDEL=7;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:166:0:0:7:83.00|83.00:0|0:.:0:.:0:0|105:0|102:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
121 chr21 9742909 GANGSTR_436734 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=9742909;END=9742920;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.50|19.50:0|0:.:0:.:0:0|27:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
122 chr21 9743363 GANGSTR_436735 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=9743363;END=9743374;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:38.54|19.46:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
123 chr21 9745317 GANGSTR_436736 TAAATTAAATTAAATCT TAAATTAAATTAAATCC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9745317;END=9745331;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=138;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:138:0:0:0:114.50|23.50:0|0:31.8:-16.98:123:-0.11:0|81:0|81:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
124 chr21 9746400 GANGSTR_436737 GCCTGCCTGCCT GACTGCCTGCCT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=9746400;END=9746411;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:69:0:0:0:42.75|26.25:0|0:106.31:-1.27:69:-0.11:0|54:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
125 chr21 9750137 GANGSTR_436738 AAAATAAAATAAAATAAAAT . . . INFRAME_PGEOM=0.98;INFRAME_UP=0.1;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=9750137;END=9750156;PERIOD=5;NSKIP=0;NFILT=0;DP=107;DSNP=0;DSTUTTER=9;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:107:0:9:5:53.50|53.50:0|0:.:0:.:0:-2|2;0|41;5|6:0|41;5|5:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
126 chr21 9750998 GANGSTR_436739 TTATTATTATTATTA . . . INFRAME_PGEOM=0.99;INFRAME_UP=0.02;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=9750998;END=9751012;PERIOD=3;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=1;DFLANKINDEL=4;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:1:4:38.02|41.98:0|0:.:0:.:0:-3|3;0|58:-3|1;0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
127 chr21 9753490 GANGSTR_436740 AGAAAGAAAGAA AGAAACAAAGAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=9753490;END=9753501;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=80;DSNP=0;DSTUTTER=2;DFLANKINDEL=8;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:80:0:2:8:64.95|15.05:0|0:9.72:-8.63:68:-0.54:0|57:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
128 chr21 9757375 GANGSTR_436741 TTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=9757375;END=9757382;PERIOD=4;NSKIP=0;NFILT=0;DP=30;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:30:0:0:0:15.00|15.00:0|0:.:0:.:0:0|26:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
129 chr21 9760484 GANGSTR_436742 AAAGGAAAGG AAAGAAAAGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=9760484;END=9760493;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=30;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:30:0:0:1:21.93|8.07:0|0:10.26:-2.18:24:-0.57:0|19:0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
130 chr21 9826648 GANGSTR_436743 CGCGCGCGCGCGCGCG CGCGCGCGCGCGCG . . INFRAME_PGEOM=0.88;INFRAME_UP=0;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.91;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9826648;END=9826663;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=5434;DSNP=0;DSTUTTER=19;DFLANKINDEL=256;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:5434:0:19:256:3040.69|2393.31:0|0:1990.12:-25.72:3523:-0.12:-43|1;-34|1;-31|1;-28|1;-24|1;-19|3;-18|1;-17|1;-15|5;-13|1;-11|1;-10|3;-9|1;-8|2;-6|1;-5|3;-4|17;-3|5;-2|1366;-1|17;0|1931;1|5;2|1;4|1;34|1:-4|15;-2|1234;0|1642:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
131 chr21 9826815 GANGSTR_436744 CGCCCCGCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9826815;END=9826824;PERIOD=5;NSKIP=0;NFILT=0;DP=8631;DSNP=0;DSTUTTER=0;DFLANKINDEL=203;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:8631:0:0:203:4315.50|4315.50:0|0:.:0:.:0:-4|2;-1|1;0|6055;1|17:0|5974:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
132 chr21 9826885 GANGSTR_436745 CGCGGCCCGTCCGTCCGTCCGTCCGT CCCGTCCGTCCGT,CGCGGCCCGTCCGTCCGTCCGT . . INFRAME_PGEOM=0.99;INFRAME_UP=0.29;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.43;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9826891;END=9826910;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-13,-4;DP=8471;DSNP=0;DSTUTTER=2200;DFLANKINDEL=866;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-13|-4:1:0.5:8471:0:2200:866:1407.29|7063.71:0|0:2460.29:-inf:7315:-0.4:-57|1;-54|1;-48|3;-47|1;-44|2;-37|1;-34|2;-33|5;-29|1;-26|1;-25|1;-24|1;-23|55;-22|1;-21|1;-19|650;-17|7;-16|1;-15|4;-14|2;-13|1;-10|1;-9|2;-8|286;-7|3;-6|1;-5|24;-4|2918;-3|1;-2|1;-1|14;0|1436;1|2;34|1:-17|20;-16|1;-13|665;-9|38;-8|305;-4|2853;0|1365:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
133 chr21 9826996 GANGSTR_436746 CTACCTACCTAC CTACCTTACCTAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.98;OUTFRAME_UP=0;OUTFRAME_DOWN=0.1;START=9826996;END=9827007;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=1;DP=10997;DSNP=0;DSTUTTER=0;DFLANKINDEL=82;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|1:1:0.5:10997:0:0:82:1628.29|9368.71:0|0:10634.3:-inf:9780:-1.99:-35|1;-14|143;-9|1;-8|1;-4|3;-3|1;-1|1;0|789;1|6817:0|764;1|6597:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
134 chr21 9831992 GANGSTR_436747 TTTCTTTCTTTCTG TTTCTTTCTTTCTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9831992;END=9832003;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=267;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:267:0:0:1:177.50|89.50:0|0:255.09:0:.:0:0|189:0|183:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
135 chr21 9834403 GANGSTR_436749 ATATATATATATATATATATATATATATATATATATATATATATG ATATATATA,ATATATATATATATATATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.18;OUTFRAME_UP=0.08;OUTFRAME_DOWN=0.04;START=9834403;END=9834446;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-36,-26;DP=147;DSNP=0;DSTUTTER=2;DFLANKINDEL=4;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-36|-26:1:0.5:147:0:2:4:107.82|39.18:0|0:140.86:-8.24:138:0:-36|83;-28|1;-26|18;-13|1;-1|1;1|1:-36|78;-28|1;-26|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
136 chr21 9848341 GANGSTR_436752 GAGTGAGTGAGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9848341;END=9848352;PERIOD=4;NSKIP=0;NFILT=0;DP=227;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:227:0:0:2:105.57|121.43:0|0:.:0:.:0:0|167:0|161:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
137 chr21 9850963 GANGSTR_436753 CACCACACCACG CACCACACCACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9850963;END=9850972;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=216;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:216:0:0:1:106.33|109.67:0|0:302.29:-0.11:193:-0.18:-3|1;0|155:0|154:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
138 chr21 9853252 GANGSTR_436754 TTATTTATTTATTTATTTAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9853252;END=9853271;PERIOD=4;NSKIP=0;NFILT=0;DP=312;DSNP=0;DSTUTTER=2;DFLANKINDEL=4;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:312:0:2:4:156.00|156.00:0|0:.:0:.:0:-7|1;-4|1;0|161;4|1:-4|1;0|154:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
139 chr21 9859220 GANGSTR_436755 CATACATACATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9859220;END=9859231;PERIOD=4;NSKIP=0;NFILT=0;DP=278;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:278:0:1:0:133.64|144.36:0|0:.:0:.:0:0|193:0|186:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
140 chr21 9863707 GANGSTR_436756 TTCTCTTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9863707;END=9863716;PERIOD=5;NSKIP=0;NFILT=0;DP=312;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:312:0:0:0:156.00|156.00:0|0:.:0:.:0:0|213:0|213:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
141 chr21 9886042 GANGSTR_436761 ATTTTATTTTATTTT ATTTTATTTATTTATTT . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.03;START=9886042;END=9886056;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=2;DP=124;DSNP=0;DSTUTTER=0;DFLANKINDEL=14;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:124:0:0:14:88.88|35.12:0|0:157.72:-6.25:108:-4.43:-1|1;0|43;2|14;5|1:0|44;2|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
142 chr21 9889282 GANGSTR_436762 TTAAATTAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9889282;END=9889291;PERIOD=5;NSKIP=0;NFILT=0;DP=122;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:122:0:0:5:61.00|61.00:0|0:.:0:.:0:0|83:0|81:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
143 chr21 9894798 GANGSTR_436764 GGTGGTGGTGGTGGT GGTGGTGGTGGT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.27;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=9894798;END=9894812;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=85;DSNP=0;DSTUTTER=20;DFLANKINDEL=10;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-3|-3:1:1:85:0:20:10:42.50|42.50:0|0:9.74:0:.:0:-20|1;-6|1;-3|48;0|17:-6|2;-3|44;0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
144 chr21 9901273 GANGSTR_436766 ATATATATATAT ATATATATATATATA . . INFRAME_PGEOM=0.55;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.82;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9901273;END=9901284;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=3;DP=197;DSNP=0;DSTUTTER=8;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|3:1:0.5:197:0:8:0:127.21|69.79:0|0:297.58:-5.02:163:-1.77:-19|1;-2|1;-1|4;0|94;1|1;3|32;9|4;13|1:-2|1;0|86;3|27;9|2:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
145 chr21 9905367 GANGSTR_436767 GCCACCACCCACCCACAC GACACCACCCTCCCACAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9905371;END=9905382;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=169;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:169:0:0:0:89.00|80.00:0|0:794.12:-0.27:169:-2.13:0|145:0|145:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
146 chr21 9907174 GANGSTR_436769 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9907174;END=9907185;PERIOD=2;NSKIP=0;NFILT=0;DP=228;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:228:0:0:0:143.89|84.11:0|0:.:0:.:0:0|197:0|184:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
147 chr21 9913229 GANGSTR_436770 GCGGGGAGGGAGGGA GTGGGGAGGGAGGGA . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9913232;END=9913243;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=315;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|0:0|0:1:0.5:315:0:0:0:157.47|157.53:0|0:216.03:-0:281:-0.26:0|239:0|234:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
148 chr21 9914186 GANGSTR_436771 GCAGAGCAGAGC GCAGAGCAGAGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9914186;END=9914195;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=327;DSNP=0;DSTUTTER=1;DFLANKINDEL=7;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:327:0:1:7:183.20|143.80:0|0:390.18:-1.72:278:-0.94:0|235:0|230:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
149 chr21 9917079 GANGSTR_436772 TATGTGTGTGTGTGTGTGTGTGTGTG TATGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.43;INFRAME_UP=0.25;INFRAME_DOWN=0.28;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9917081;END=9917104;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,6;DP=260;DSNP=0;DSTUTTER=146;DFLANKINDEL=24;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 2|1:6|-2:1:0.5:260:0:146:24:155.55|104.45:0|0:11.6:-3.8:246:-0.29:-18|22;-4|17;-2|19;0|85;2|15;4|19;6|10:-4|17;-2|19;0|30;2|20;4|43;6|12;8|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
150 chr21 9923864 GANGSTR_436774 TTTTTCTTTCTTTCTTTTTT TCTTTCTTTCTTTCTTTC,TTTTTCTTTCTTTTTTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.61;OUTFRAME_UP=0.14;OUTFRAME_DOWN=0.05;START=9923867;END=9923878;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-2,-2;DP=231;DSNP=0;DSTUTTER=51;DFLANKINDEL=29;AN=2;REFAC=0;AC=1,1;HRUN=6;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 2|1:-2|-2:1:0.5:231:0:51:29:125.25|105.75:0|0:207.42:-0.68:228:-0.3:-18|6;-9|4;-5|1;-3|2;-2|88;-1|5;0|33;1|17;2|1:-18|5;-10|7;-2|117;2|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
151 chr21 9929572 GANGSTR_436776 ATTATTATTATTTCA ATTATTATTATTT . . INFRAME_PGEOM=0.63;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.73;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9929572;END=9929583;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=166;DSNP=0;DSTUTTER=7;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:166:0:7:2:89.54|76.46:0|0:579.78:-0.47:134:-0.77:-6|4;-2|50;0|63;3|1:-6|4;-2|51;0|56;3|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
152 chr21 9942076 GANGSTR_436777 TTTCTCTTTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9942076;END=9942087;PERIOD=6;NSKIP=0;NFILT=0;DP=277;DSNP=0;DSTUTTER=0;DFLANKINDEL=7;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:277:0:0:7:126.75|150.25:0|0:.:0:.:0:0|195:0|197:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
153 chr21 9945739 GANGSTR_436778 TAACACACACACACACACACACACACACACACACAC TCACACACACACACACACAAACACATACACAC . . INFRAME_PGEOM=0.82;INFRAME_UP=0.14;INFRAME_DOWN=0.25;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9945741;END=9945774;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=301;DSNP=0;DSTUTTER=105;DFLANKINDEL=44;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:301:0:105:44:242.13|58.87:0|0:60.8:-29.34:261:-0.52:-40|1;-16|6;-8|1;-7|3;-6|7;-4|72;-2|13;-1|1;0|33;2|38;4|6;5|1;6|1;11|1:-16|4;-8|1;-6|6;-4|47;-2|10;0|25;2|34;4|3;6|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
154 chr21 9953134 GANGSTR_436780 ACACACACACAC ACTCACACACAC . . INFRAME_PGEOM=1;INFRAME_UP=0;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9953134;END=9953145;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=465;DSNP=0;DSTUTTER=1;DFLANKINDEL=9;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:465:0:1:9:399.73|65.27:0|0:44.95:-69.13:417:-1.36:-2|1;0|380:-2|1;0|342:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
155 chr21 9966562 GANGSTR_436781 AAGATAAGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9966562;END=9966571;PERIOD=5;NSKIP=0;NFILT=0;DP=137;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:137:0:1:2:68.50|68.50:0|0:.:0:.:0:-5|1;0|102:-5|1;0|101:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
156 chr21 9971001 GANGSTR_436782 CGTTTATTTATTTA CATTTATTTATTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=9971003;END=9971014;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=347;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:347:0:0:3:255.11|91.89:0|0:196.86:-21.58:301:-0.24:0|253:0|245:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
157 chr21 9973013 GANGSTR_436783 AAATAAAATAAAATA ACATAAATAAAATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.01;START=9973013;END=9973027;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=340;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:340:0:0:5:274.20|65.80:0|0:319.37:-35.35:297:-0.38:-1|37;0|185:-1|35;0|182:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
158 chr21 9983433 GANGSTR_436784 ATTTATTTATTT ATTTAGTTATTT,ATTTAGTTGTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=9983433;END=9983444;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0,0;DP=73;DSNP=0;DSTUTTER=1;DFLANKINDEL=6;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:0|0:1:0.5:73:0:1:6:48.08|24.92:0|0:21.89:-2.5:62:-0.36:-1|1;0|22:0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
159 chr21 9996415 GANGSTR_436786 AATTTAATTTAATTT AATTTAATTAAATTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=9996415;END=9996429;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=166;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:166:0:0:4:130.83|35.17:0|0:75.29:-15.11:150:-5.54:0|103:0|103:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
160 chr21 10000323 GANGSTR_436788 TTATTTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.99;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.02;START=10000323;END=10000342;PERIOD=4;NSKIP=0;NFILT=0;DP=408;DSNP=0;DSTUTTER=82;DFLANKINDEL=7;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:408:0:82:7:196.00|212.00:0|0:.:0:.:0:-32|1;-9|4;-8|59;0|176;1|1;8|2:-8|60;0|164;8|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
161 chr21 10004115 GANGSTR_436789 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=10004115;END=10004126;PERIOD=4;NSKIP=0;NFILT=0;DP=455;DSNP=0;DSTUTTER=1;DFLANKINDEL=27;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:455:0:1:27:255.31|199.69:0|0:.:0:.:0:-4|1;0|323:0|300:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
162 chr21 10012942 GANGSTR_436790 TATTTATTTATTAC TATTTATTTATTAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=10012942;END=10012953;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=367;DSNP=0;DSTUTTER=0;DFLANKINDEL=8;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:367:0:0:8:268.23|98.77:0|0:228.43:-21.01:323:-2.04:0|272:0|270:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
163 chr21 10028326 GANGSTR_436791 CTTTCTTTCTTTTCTGT CTTTCTTTCTTTTCTGC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10028326;END=10028337;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=281;DSNP=0;DSTUTTER=0;DFLANKINDEL=21;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:281:0:0:21:127.54|153.46:0|0:366.88:-1.01:228:-0.38:0|194:0|175:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
164 chr21 10029397 GANGSTR_436792 AAAGAAAGAAAG AAAGAAAGAAGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10029397;END=10029408;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=128;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:128:0:0:1:64.00|64.00:0|0:32.19:0:.:0:0|80:0|79:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
165 chr21 10094686 GANGSTR_436795 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10094686;END=10094700;PERIOD=5;NSKIP=0;NFILT=0;DP=194;DSNP=0;DSTUTTER=0;DFLANKINDEL=7;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:194:0:0:7:97.00|97.00:0|0:.:0:.:0:-1|1;0|125:0|120:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
166 chr21 10096146 GANGSTR_436796 TGATTGATTGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10096146;END=10096157;PERIOD=4;NSKIP=0;NFILT=0;DP=207;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:207:0:0:2:103.50|103.50:0|0:.:0:.:0:-1|1;0|131:0|129:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
167 chr21 10123938 GANGSTR_436800 ATAAATAAATAAATTG ATAAATAAATAAATTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10123938;END=10123949;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=97;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:97:0:0:1:66.51|30.49:0|0:18.83:-5.69:55:-2.5:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
168 chr21 10128367 GANGSTR_436801 AGAAAGAAAGAAAAT AGAAAGAAAGAAAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10128367;END=10128378;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=148;DSNP=0;DSTUTTER=0;DFLANKINDEL=11;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|0:0|0:1:0.5:148:0:0:11:87.65|60.35:0|0:25.59:-2.03:101:-0.78:0|86:0|82:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
169 chr21 10128622 GANGSTR_436802 TAAATAAATAAA TAAAGAAATAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.69;OUTFRAME_UP=0;OUTFRAME_DOWN=0.28;START=10128622;END=10128633;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=404;DSNP=0;DSTUTTER=0;DFLANKINDEL=42;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:404:0:0:42:297.82|106.18:0|0:601.42:-21.95:396:-0.52:-2|35;-1|48;0|214;4|1:-1|81;0|205:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
170 chr21 10132148 GANGSTR_436803 AAATAAATAAATAAATAAATAAATAAATAAATAAAT AAATAAATAAATAAATAAATAAATAAAT,AAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT . . INFRAME_PGEOM=0.66;INFRAME_UP=0.07;INFRAME_DOWN=0.24;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=10132148;END=10132183;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-8,4;DP=141;DSNP=0;DSTUTTER=19;DFLANKINDEL=17;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-8|4:0.94:0.47:141:0:19:17:59.65|81.35:0|0:1.2:-4.35:68:-1.54:-19|10;-8|5;0|8;3|2;4|6;5|2:-20|5;-8|5;0|8;4|7;8|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
171 chr21 10134466 GANGSTR_436804 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=1;OUTFRAME_UP=0;OUTFRAME_DOWN=0.01;START=10134466;END=10134477;PERIOD=4;NSKIP=0;NFILT=0;DP=407;DSNP=0;DSTUTTER=0;DFLANKINDEL=38;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:407:0:0:38:203.50|203.50:0|0:.:0:.:0:-1|1;0|264;10|1:0|254:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
172 chr21 10136082 GANGSTR_436806 TAAATTAAATTAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10136082;END=10136096;PERIOD=5;NSKIP=0;NFILT=0;DP=96;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:96:0:0:1:48.00|48.00:0|0:.:0:.:0:0|62:0|62:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
173 chr21 10136969 GANGSTR_436807 CCTTTATTTTATTTTAT CTTTTATTTTAT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.03;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.33;OUTFRAME_UP=0;OUTFRAME_DOWN=0.05;START=10136971;END=10136985;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-5;DP=590;DSNP=0;DSTUTTER=108;DFLANKINDEL=28;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-5:1:0.5:590:0:108:28:328.63|261.37:0|0:686.26:-2.31:536:-3.5:-8|15;-5|84;-3|7;0|290;5|1:-5|95;0|297;5|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
174 chr21 10144583 GANGSTR_436808 CACACACACACACACACACACACACACACACACACACA CACACACACACACACACACACACACACACACACACACACA . . INFRAME_PGEOM=0.52;INFRAME_UP=0.12;INFRAME_DOWN=0.43;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10144583;END=10144620;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=413;DSNP=0;DSTUTTER=119;DFLANKINDEL=18;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:413:0:119:18:201.59|211.41:0|0:23.02:-0.07:226:-1.49:-12|4;-9|4;-7|6;-6|4;-4|23;-3|1;-2|20;-1|1;0|58;2|19;3|1;4|22;5|1;6|2;8|7;10|9;12|7;14|4;15|1:-12|2;-6|5;-4|20;-2|16;0|47;2|18;4|18;8|8;10|5;12|7;14|4:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
175 chr21 10150941 GANGSTR_436809 GCTGAATCAATCAATC GTTGATTCAATCAATC . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=10150945;END=10150956;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=340;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:340:0:0:2:251.00|89.00:0|0:410.99:-19.1:326:-0.1:0|260:0|252:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
176 chr21 10159488 GANGSTR_436810 GTTATTTTATTTTATT GATATTTTATTTTATT . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=1;OUTFRAME_UP=0;OUTFRAME_DOWN=0.01;START=10159489;END=10159503;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=454;DSNP=0;DSTUTTER=1;DFLANKINDEL=62;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:454:0:1:62:351.12|102.88:0|0:163.81:-37.69:389:-4.69:-1|1;0|293:-5|1;0|286:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
177 chr21 10160234 GANGSTR_436811 CAGTGAAGCCAGTGAAGC . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.01;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10160234;END=10160251;PERIOD=9;NSKIP=0;NFILT=0;DP=214;DSNP=0;DSTUTTER=3;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:214:0:3:5:107.00|107.00:0|0:.:0:.:0:-9|2;0|125:-9|2;0|136:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
178 chr21 10161428 GANGSTR_436812 TAAATAAATAAACAA TAAATAAATAAACAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10161428;END=10161439;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=299;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:299:0:0:0:212.05|86.95:0|0:148.99:-16.26:231:-2.31:-12|1;0|167:0|161:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
179 chr21 10168279 GANGSTR_436814 TTTGGTTTGGTTTGGTTTGG . . . INFRAME_PGEOM=1;INFRAME_UP=0;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.24;OUTFRAME_UP=0;OUTFRAME_DOWN=0.06;START=10168279;END=10168298;PERIOD=5;NSKIP=0;NFILT=0;DP=440;DSNP=0;DSTUTTER=8;DFLANKINDEL=20;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:440:0:8:20:220.00|220.00:0|0:.:0:.:0:-6|18;-5|2;-1|1;0|261:-10|4;-5|4;0|261:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
180 chr21 10177283 GANGSTR_436815 TCATTTCATTTCATT TCATTTCATTTTATT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10177283;END=10177297;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=217;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:217:0:0:1:163.91|53.09:0|0:118.05:-15.3:195:-0.65:0|151:0|150:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
181 chr21 10178165 GANGSTR_436816 AGGCAGGCAGGC AGGCAAGCAGGC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10178165;END=10178176;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=240;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:240:0:0:2:192.81|47.19:0|0:82.94:-24.2:216:-0.07:0|175:0|172:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
182 chr21 10185819 GANGSTR_436818 GTTCTGTGTGTGTGTGTG GCTCTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.97;INFRAME_UP=0.16;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10185823;END=10185836;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=154;DSNP=0;DSTUTTER=22;DFLANKINDEL=3;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:154:0:22:3:71.14|82.86:0|0:169.17:-0.47:111:-12.79:-2|3;0|84;2|16;10|1:-2|2;0|67;2|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
183 chr21 10187469 GANGSTR_436819 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10187469;END=10187483;PERIOD=5;NSKIP=0;NFILT=0;DP=154;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:154:0:1:2:77.00|77.00:0|0:.:0:.:0:0|107:0|107:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
184 chr21 10189719 GANGSTR_436820 CTTTTCTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10189719;END=10189728;PERIOD=5;NSKIP=0;NFILT=0;DP=246;DSNP=0;DSTUTTER=1;DFLANKINDEL=6;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:246:0:1:6:123.00|123.00:0|0:.:0:.:0:-1|1;0|174;1|1:-5|1;0|171:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
185 chr21 10192928 GANGSTR_436821 AAATAAAATAAAATAAAATA AAAATAAAATAAAATAAAATA . . INFRAME_PGEOM=0.98;INFRAME_UP=0.01;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.39;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.13;START=10192928;END=10192947;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=1;DP=176;DSNP=0;DSTUTTER=7;DFLANKINDEL=14;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|1:1:0.5:176:0:7:14:118.33|57.67:0|0:224.24:-6.82:135:-4.85:-4|7;-3|8;0|70;1|23:-4|7;0|70;1|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
186 chr21 10196705 GANGSTR_436824 AGAGAAAGAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10196705;END=10196716;PERIOD=6;NSKIP=0;NFILT=0;DP=216;DSNP=0;DSTUTTER=0;DFLANKINDEL=6;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:216:0:0:6:108.00|108.00:0|0:.:0:.:0:-4|1;0|151:0|154:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
187 chr21 10206766 GANGSTR_436825 CCCTCCCTCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10206766;END=10206777;PERIOD=4;NSKIP=0;NFILT=0;DP=158;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:158:0:0:0:88.00|70.00:0|0:.:0:.:0:0|96:0|93:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
188 chr21 10209386 GANGSTR_436826 TAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10209386;END=10209394;PERIOD=3;NSKIP=0;NFILT=0;DP=226;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:226:0:0:1:113.00|113.00:0|0:.:0:.:0:0|184:0|175:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
189 chr21 10209954 GANGSTR_436827 CACACACACACACACA CACACACACACACAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10209954;END=10209969;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=88;DSNP=0;DSTUTTER=11;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:88:0:11:2:43.49|44.51:0|0:73.55:-0.16:60:-0.1:-11|6;0|42:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
190 chr21 10211308 GANGSTR_436828 TTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10211308;END=10211317;PERIOD=5;NSKIP=0;NFILT=0;DP=184;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:184:0:0:2:92.00|92.00:0|0:.:0:.:0:0|126;7|1:0|126:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
191 chr21 10371459 GANGSTR_436829 ACACACACACACACACACAC ACACACACACACACACACACATGC,ACACACACACACACACACACACACGC . . INFRAME_PGEOM=0.94;INFRAME_UP=0.28;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10371459;END=10371478;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4,6;DP=151;DSNP=0;DSTUTTER=56;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:4|6:1:0.5:151:0:56:0:53.29|97.71:0|0:69.45:-13.01:122:-3.3:-3|1;-1|5;0|5;1|1;2|35;4|12;6|23;8|16:2|30;4|10;6|19;8|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
192 chr21 10371629 GANGSTR_436830 ATTATTATTATT ATTATTATTATTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.98;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.02;START=10371629;END=10371640;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=1;DP=133;DSNP=0;DSTUTTER=0;DFLANKINDEL=15;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|1:1:0.5:133:0:0:15:62.20|70.80:0|0:102.26:-0.36:132:-0.79:0|66;1|39:0|41;1|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
193 chr21 10372155 GANGSTR_436831 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10372155;END=10372166;PERIOD=4;NSKIP=0;NFILT=0;DP=114;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:114:0:0:0:52.64|61.36:0|0:.:0:.:0:0|85:0|83:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
194 chr21 10373906 GANGSTR_436832 TTATTATTATTATTA . . . INFRAME_PGEOM=1;INFRAME_UP=0.01;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10373906;END=10373920;PERIOD=3;NSKIP=0;NFILT=0;DP=121;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:121:0:1:1:60.50|60.50:0|0:.:0:.:0:-3|1;0|86:-3|1;0|85:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
195 chr21 10376334 GANGSTR_436833 CAAAAAACAAAAAACAAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10376334;END=10376354;PERIOD=7;NSKIP=0;NFILT=0;DP=158;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=6;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:158:0:0:0:79.00|79.00:0|0:.:0:.:0:0|75:0|84:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
196 chr21 10378210 GANGSTR_436834 ACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.01;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10378210;END=10378221;PERIOD=2;NSKIP=0;NFILT=0;DP=131;DSNP=0;DSTUTTER=3;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:131:0:3:1:65.50|65.50:0|0:.:0:.:0:-2|1;0|97:-2|1;0|89:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
197 chr21 10380239 GANGSTR_436835 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10380239;END=10380254;PERIOD=4;NSKIP=0;NFILT=0;DP=140;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:140:0:0:0:70.00|70.00:0|0:.:0:.:0:0|88:0|84:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
198 chr21 10381150 GANGSTR_436836 ACTCACTCACTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10381150;END=10381161;PERIOD=4;NSKIP=0;NFILT=0;DP=163;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:163:0:0:0:92.41|70.59:0|0:.:0:.:0:0|109:0|105:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
199 chr21 10385412 GANGSTR_436837 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10385412;END=10385427;PERIOD=4;NSKIP=0;NFILT=0;DP=127;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:127:0:0:0:63.50|63.50:0|0:.:0:.:0:0|88:0|87:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
200 chr21 10385767 GANGSTR_436838 TTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10385767;END=10385776;PERIOD=5;NSKIP=0;NFILT=0;DP=150;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:150:0:0:0:75.00|75.00:0|0:.:0:.:0:0|111:0|111:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
201 chr21 10390609 GANGSTR_436839 GTTTTGTTTGTTTGTTTG GCTTTGTTTGTTTGTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10390611;END=10390626;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=144;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:144:0:0:1:85.94|58.06:0|0:167.54:-1.87:120:-0.88:-16|1;0|93:0|90:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
202 chr21 10390756 GANGSTR_436840 TTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10390756;END=10390767;PERIOD=4;NSKIP=0;NFILT=0;DP=136;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:136:0:0:1:68.00|68.00:0|0:.:0:.:0:0|90;1|1:0|88:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
203 chr21 10393957 GANGSTR_436841 TGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10393957;END=10393971;PERIOD=5;NSKIP=0;NFILT=0;DP=145;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:145:0:0:0:72.50|72.50:0|0:.:0:.:0:0|95:0|95:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
204 chr21 10397219 GANGSTR_436842 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10397219;END=10397230;PERIOD=4;NSKIP=0;NFILT=0;DP=134;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:134:0:0:1:76.50|57.50:0|0:.:0:.:0:-3|1;0|90:0|89:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
205 chr21 10401098 GANGSTR_436843 ACACACACACACACACACACACAC ACACACACACACACACACACAC . . INFRAME_PGEOM=0.98;INFRAME_UP=0.05;INFRAME_DOWN=0.4;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10401098;END=10401121;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=134;DSNP=0;DSTUTTER=70;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:134:0:70:1:80.01|53.99:0|0:19.02:-1.38:117:-0.34:-4|23;-2|35;0|34;2|1:-4|23;-2|33;0|28;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
206 chr21 10406805 GANGSTR_436844 GTTTTTTGTTTGTTTG GGTTTTTGTTTGTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10406809;END=10406820;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=134;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=6;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|0:0|0:1:0.5:134:0:1:0:67.08|66.92:0|0:125.31:0:133:0:0|88:0|83:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
207 chr21 10407457 GANGSTR_436845 ATATAATAATAATA ACATAATAATAATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10407459;END=10407470;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=136;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:136:0:0:0:104.54|31.46:0|0:58.8:-11.07:119:-0.61:0|91:0|87:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
208 chr21 10417085 GANGSTR_436846 TATATATATATATATAATA TATATATATATAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10417085;END=10417100;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=82;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-6:1:0.5:82:0:0:1:54.49|27.51:0|0:63.35:-2.74:71:-1.43:-6|20;0|41:-6|19;0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
209 chr21 10418210 GANGSTR_436847 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10418210;END=10418221;PERIOD=4;NSKIP=0;NFILT=0;DP=143;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:143:0:0:0:71.50|71.50:0|0:.:0:.:0:0|105:0|102:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
210 chr21 10422555 GANGSTR_436848 CAAAACAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.94;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.03;START=10422555;END=10422574;PERIOD=5;NSKIP=0;NFILT=0;DP=161;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:161:0:0:3:80.50|80.50:0|0:.:0:.:0:-1|2;0|106:0|108:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
211 chr21 10427016 GANGSTR_436849 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10427016;END=10427027;PERIOD=3;NSKIP=0;NFILT=0;DP=118;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:118:0:0:0:39.53|78.47:0|0:.:0:.:0:0|74:0|71:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
212 chr21 10427527 GANGSTR_436850 TCTTTCTTTCTTCTG TCTTTCTTTCTTCTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10427527;END=10427538;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=138;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:138:0:0:0:83.43|54.57:0|0:154.47:-2:119:-0.26:0|101:0|97:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
213 chr21 10434294 GANGSTR_436851 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10434294;END=10434305;PERIOD=3;NSKIP=0;NFILT=0;DP=136;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:136:0:0:0:68.00|68.00:0|0:.:0:.:0:0|103:0|99:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
214 chr21 10435828 GANGSTR_436852 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10435828;END=10435839;PERIOD=2;NSKIP=0;NFILT=0;DP=121;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:121:0:1:0:60.50|60.50:0|0:.:0:.:0:0|92:0|85;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
215 chr21 10440461 GANGSTR_436853 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10440461;END=10440472;PERIOD=4;NSKIP=0;NFILT=0;DP=120;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:120:0:0:0:60.00|60.00:0|0:.:0:.:0:0|83:0|81:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
216 chr21 10442046 GANGSTR_436854 AAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10442046;END=10442053;PERIOD=4;NSKIP=0;NFILT=0;DP=145;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:145:0:0:0:72.50|72.50:0|0:.:0:.:0:0|112:0|109:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
217 chr21 10444705 GANGSTR_436855 TTCAGTTCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10444705;END=10444714;PERIOD=5;NSKIP=0;NFILT=0;DP=153;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:153:0:0:0:76.50|76.50:0|0:.:0:.:0:0|106:0|106:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
218 chr21 10445632 GANGSTR_436856 TAAATTAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10445632;END=10445641;PERIOD=5;NSKIP=0;NFILT=0;DP=112;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:112:0:0:0:56.00|56.00:0|0:.:0:.:0:0|79:0|79:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
219 chr21 10448493 GANGSTR_436857 TGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10448493;END=10448507;PERIOD=5;NSKIP=0;NFILT=0;DP=138;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:138:0:0:0:69.00|69.00:0|0:.:0:.:0:0|93:0|93:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
220 chr21 10449854 GANGSTR_436858 TTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10449854;END=10449869;PERIOD=4;NSKIP=0;NFILT=0;DP=131;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:131:0:0:1:65.50|65.50:0|0:.:0:.:0:0|76:0|75:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
221 chr21 10458423 GANGSTR_436859 CTTCCTTCCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10458423;END=10458434;PERIOD=4;NSKIP=0;NFILT=0;DP=125;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:125:0:0:0:62.50|62.50:0|0:.:0:.:0:0|93:0|90:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
222 chr21 10460929 GANGSTR_436860 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10460929;END=10460940;PERIOD=4;NSKIP=0;NFILT=0;DP=140;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:140:0:0:0:70.00|70.00:0|0:.:0:.:0:0|97:0|95:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
223 chr21 10470497 GANGSTR_436861 CAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10470497;END=10470512;PERIOD=4;NSKIP=0;NFILT=0;DP=126;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:126:0:0:2:63.00|63.00:0|0:.:0:.:0:0|86:0|81:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
224 chr21 10473581 GANGSTR_436862 AAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.01;START=10473581;END=10473595;PERIOD=5;NSKIP=0;NFILT=0;DP=149;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:149:0:1:2:76.00|73.00:0|0:.:0:.:0:0|98;1|1:-5|1;0|98:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
225 chr21 10475143 GANGSTR_436863 TTGTTTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10475143;END=10475158;PERIOD=4;NSKIP=0;NFILT=0;DP=114;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:114:0:0:2:65.00|49.00:0|0:.:0:.:0:-16|1;0|71:0|68:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
226 chr21 10479831 GANGSTR_436864 TTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10479831;END=10479840;PERIOD=5;NSKIP=0;NFILT=0;DP=134;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:134:0:0:2:67.00|67.00:0|0:.:0:.:0:0|96:0|96:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
227 chr21 10480064 GANGSTR_436865 CCTTCCTTCCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10480064;END=10480075;PERIOD=4;NSKIP=0;NFILT=0;DP=140;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:140:0:0:0:70.00|70.00:0|0:.:0:.:0:0|99:0|99:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
228 chr21 10482812 GANGSTR_436867 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10482812;END=10482826;PERIOD=5;NSKIP=0;NFILT=0;DP=124;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:124:0:0:1:62.00|62.00:0|0:.:0:.:0:0|68;4|1:0|68:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
229 chr21 10485199 GANGSTR_436868 TCTGTTCTGTTCTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10485199;END=10485213;PERIOD=5;NSKIP=0;NFILT=0;DP=126;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:126:0:0:0:63.00|63.00:0|0:.:0:.:0:0|77:0|77:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
230 chr21 10492408 GANGSTR_436869 AATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10492408;END=10492415;PERIOD=4;NSKIP=0;NFILT=0;DP=138;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:138:0:0:1:69.00|69.00:0|0:.:0:.:0:-4|1;0|109:0|104:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
231 chr21 10495506 GANGSTR_436870 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10495506;END=10495517;PERIOD=2;NSKIP=0;NFILT=0;DP=148;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:148:0:1:0:74.00|74.00:0|0:.:0:.:0:0|103:0|97:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
232 chr21 10498831 GANGSTR_436871 AAAATAAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10498831;END=10498850;PERIOD=5;NSKIP=0;NFILT=0;DP=163;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:163:0:0:1:81.50|81.50:0|0:.:0:.:0:0|90:0|89:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
233 chr21 10499541 GANGSTR_436872 AAATAAATAAATAAATAAATAAATAAAT AAATAAATAAATAAATAAATAAATAAATAAATAAAT . . INFRAME_PGEOM=0.98;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10499541;END=10499568;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=8;DP=145;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|8:1:0.5:145:0:1:0:86.91|58.09:0|0:46.76:-3.2:69:-1.52:-4|1;-1|5;0|39;1|1;8|13:-4|1;0|39;8|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
234 chr21 10501789 GANGSTR_436873 AAACAAAACA AACAAAACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.97;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=10501789;END=10501798;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:42:0:0:0:22.50|19.50:0|0:35.83:-0.15:29:-0.74:-1|11;0|15:-1|12;0|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
235 chr21 10503449 GANGSTR_436874 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10503449;END=10503460;PERIOD=2;NSKIP=0;NFILT=0;DP=147;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:147:0:0:0:73.50|73.50:0|0:.:0:.:0:0|108:0|99:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
236 chr21 10503972 GANGSTR_436875 TTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10503972;END=10503986;PERIOD=5;NSKIP=0;NFILT=0;DP=135;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:135:0:0:1:67.50|67.50:0|0:.:0:.:0:0|84:0|83:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
237 chr21 10505871 GANGSTR_436876 AACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10505871;END=10505885;PERIOD=3;NSKIP=0;NFILT=0;DP=127;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:127:0:0:0:39.00|88.00:0|0:.:0:.:0:0|85:0|79:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
238 chr21 10508456 GANGSTR_436877 TTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10508456;END=10508463;PERIOD=4;NSKIP=0;NFILT=0;DP=156;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:156:0:0:5:78.00|78.00:0|0:.:0:.:0:0|122:0|119:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
239 chr21 10509432 GANGSTR_436878 ATTTATTTATTT ATTTATTTACTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10509432;END=10509443;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=157;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:157:0:0:0:119.48|37.52:0|0:82.59:-11.78:140:-0.39:0|118:0|114:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
240 chr21 10510615 GANGSTR_436879 GAATGAATGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10510615;END=10510626;PERIOD=4;NSKIP=0;NFILT=0;DP=85;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:85:0:0:0:38.00|47.00:0|0:.:0:.:0:0|56:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
241 chr21 10514420 GANGSTR_436881 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10514420;END=10514431;PERIOD=4;NSKIP=0;NFILT=0;DP=118;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:118:0:0:0:59.00|59.00:0|0:.:0:.:0:0|89:0|86:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
242 chr21 10514752 GANGSTR_436882 AAATATATATATATATAT ATATATATATATATATAT,AAAAATATATATATATATAT . . INFRAME_PGEOM=1;INFRAME_UP=0.01;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10514754;END=10514769;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0,2;DP=156;DSNP=0;DSTUTTER=27;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:0|2:1:0.5:156:0:27:1:91.19|64.81:0|0:9.08:-1.45:131:-0.14:-2|1;0|103:-2|2;0|70;2|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
243 chr21 10516263 GANGSTR_436883 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10516263;END=10516274;PERIOD=4;NSKIP=0;NFILT=0;DP=150;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:150:0:0:0:75.00|75.00:0|0:.:0:.:0:0|110:0|109:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
244 chr21 10516555 GANGSTR_436884 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10516555;END=10516566;PERIOD=3;NSKIP=0;NFILT=0;DP=130;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:130:0:0:0:65.00|65.00:0|0:.:0:.:0:0|92:0|84:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
245 chr21 10524017 GANGSTR_436886 ATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10524017;END=10524025;PERIOD=3;NSKIP=0;NFILT=0;DP=98;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:98:0:0:0:49.00|49.00:0|0:.:0:.:0:0|70:0|67:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
246 chr21 10525445 GANGSTR_436887 ACAGACAGACAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10525445;END=10525456;PERIOD=4;NSKIP=0;NFILT=0;DP=117;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:117:0:0:0:58.50|58.50:0|0:.:0:.:0:0|90:0|90:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
247 chr21 10527237 GANGSTR_436888 ATAATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10527237;END=10527251;PERIOD=3;NSKIP=0;NFILT=0;DP=146;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:146:0:0:0:73.00|73.00:0|0:.:0:.:0:0|100:0|95:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
248 chr21 10529203 GANGSTR_436889 TATATATATATA TATATATATA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.02;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10529203;END=10529214;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=107;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:107:0:0:0:40.40|66.60:0|0:20.55:-2.83:79:-0.9:-2|49;0|23:-2|45;0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
249 chr21 10538484 GANGSTR_436890 AATTAAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10538484;END=10538493;PERIOD=5;NSKIP=0;NFILT=0;DP=115;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:115:0:0:0:57.50|57.50:0|0:.:0:.:0:0|83:0|83:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
250 chr21 10540729 GANGSTR_436891 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10540729;END=10540740;PERIOD=4;NSKIP=0;NFILT=0;DP=122;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:122:0:0:0:61.00|61.00:0|0:.:0:.:0:0|84:0|84:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
251 chr21 10542121 GANGSTR_436892 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10542121;END=10542132;PERIOD=4;NSKIP=0;NFILT=0;DP=104;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:104:0:0:0:52.00|52.00:0|0:.:0:.:0:0|69:0|63:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
252 chr21 10542653 GANGSTR_436893 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10542653;END=10542664;PERIOD=4;NSKIP=0;NFILT=0;DP=121;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:121:0:0:0:60.50|60.50:0|0:.:0:.:0:0|79:0|79:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
253 chr21 10545062 GANGSTR_436894 ATACATACATACATACATACATAC ATACATACATACATACATAC . . INFRAME_PGEOM=0.98;INFRAME_UP=0.19;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10545062;END=10545085;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=158;DSNP=0;DSTUTTER=19;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:158:0:19:1:79.00|79.00:0|0:13.21:0:.:0:-4|65;0|14;4|1:-4|64;0|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
254 chr21 10546607 GANGSTR_436895 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10546607;END=10546618;PERIOD=4;NSKIP=0;NFILT=0;DP=152;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:152:0:0:2:40.93|111.07:0|0:.:0:.:0:-7|1;0|110:0|108:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
255 chr21 10547387 GANGSTR_436896 ACACACACACACACACACACACACACACACACACACAAG ACACACACACACACACACACACACACACACACACAAG,ACACACACACACACACACACACACACACACACACACAAA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.35;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10547387;END=10547422;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,0;DP=113;DSNP=0;DSTUTTER=48;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|0:1:0.5:113:0:48:1:82.02|30.98:0|0:15.41:-7.48:87:-0.52:-8|1;-6|1;-4|20;-2|8;0|17;2|15:-8|1;-6|1;-4|17;-2|7;0|15;2|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
256 chr21 10551531 GANGSTR_436897 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10551531;END=10551542;PERIOD=4;NSKIP=0;NFILT=0;DP=115;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:115:0:0:0:57.50|57.50:0|0:.:0:.:0:0|80:0|79:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
257 chr21 10565732 GANGSTR_436899 GCTTTGTTTTGTTTTGTTTTGTTTTG GTTTTGTTTTGTTTTGTTTTGTTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10565738;END=10565757;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=126;DSNP=0;DSTUTTER=9;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:126:0:9:0:66.63|59.37:0|0:112.51:-0.26:101:-0.38:-38|1;-1|1;0|54;2|1:0|49;5|5:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
258 chr21 10568605 GANGSTR_436900 AAATAAAATAAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10568605;END=10568619;PERIOD=5;NSKIP=0;NFILT=0;DP=124;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:124:0:0:0:62.00|62.00:0|0:.:0:.:0:0|76:0|76:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
259 chr21 10568730 GANGSTR_436901 TGTATGTATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10568730;END=10568741;PERIOD=4;NSKIP=0;NFILT=0;DP=111;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:111:0:0:0:55.50|55.50:0|0:.:0:.:0:0|79:0|77:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
260 chr21 10572909 GANGSTR_436903 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10572909;END=10572920;PERIOD=4;NSKIP=0;NFILT=0;DP=152;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:152:0:0:0:71.50|80.50:0|0:.:0:.:0:0|106:0|102:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
261 chr21 10574632 GANGSTR_436905 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10574632;END=10574643;PERIOD=4;NSKIP=0;NFILT=0;DP=166;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:166:0:0:1:83.00|83.00:0|0:.:0:.:0:0|115:0|111:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
262 chr21 10588972 GANGSTR_436906 GAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGA . . INFRAME_PGEOM=0.94;INFRAME_UP=0.03;INFRAME_DOWN=0.43;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10588972;END=10588997;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=152;DSNP=0;DSTUTTER=26;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:152:0:26:0:74.90|77.10:0|0:18.17:-2.95:92:-0.57:-6|1;-4|24;-2|35;0|24:-6|1;-4|20;-2|31;0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
263 chr21 10594833 GANGSTR_436907 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10594833;END=10594842;PERIOD=5;NSKIP=0;NFILT=0;DP=131;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:131:0:0:2:65.50|65.50:0|0:.:0:.:0:0|97:0|96:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
264 chr21 10599597 GANGSTR_436908 CGGGCGGGCGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10599597;END=10599608;PERIOD=4;NSKIP=0;NFILT=0;DP=112;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:112:0:0:5:48.89|63.11:0|0:.:0:.:0:0|79;1|1:0|75:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
265 chr21 10616968 GANGSTR_436909 AAGAGAAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10616968;END=10616977;PERIOD=5;NSKIP=0;NFILT=0;DP=164;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:164:0:0:0:82.00|82.00:0|0:.:0:.:0:0|125:0|125:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
266 chr21 10621527 GANGSTR_436910 TATGTATGTATG TACGTATGTATG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10621527;END=10621538;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=172;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:172:0:0:0:151.46|20.54:0|0:5.16:-28.91:155:-1.89:0|120:0|120:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
267 chr21 10624372 GANGSTR_436911 GGAGGAGGAGGA . . . INFRAME_PGEOM=1;INFRAME_UP=0.01;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10624372;END=10624383;PERIOD=3;NSKIP=0;NFILT=0;DP=133;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:133:0:1:0:66.50|66.50:0|0:.:0:.:0:-3|1;0|91:-3|1;0|87:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
268 chr21 10627498 GANGSTR_436912 AATAAATAAATAAATAAATA AATAAATAAATAAATAAATAAATA . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10627498;END=10627517;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=132;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:132:0:0:0:64.36|67.64:0|0:28.24:-0.09:77:0:-9|2;0|30;1|1;4|30:0|30;4|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
269 chr21 10632404 GANGSTR_436914 AACTCACTCACTC ACCTCATTCACTC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10632405;END=10632416;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=139;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:139:0:0:0:66.00|73.00:0|0:463.84:-0.22:131:-0.42:0|100:0|98:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
270 chr21 10634228 GANGSTR_436915 AATTAATTAATTAATTAATTAATTAATT AATAAATAAATAAATTAATTAATTAATT,AATAAATTAATTAATTAATTAATTAATT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10634228;END=10634255;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0,0;DP=78;DSNP=0;DSTUTTER=14;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:0|0:1:0.5:78:0:14:0:15.40|62.60:0|0:46.8:-7.89:68:-0.72:-5|1;0|42:0|31;4|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
271 chr21 10639268 GANGSTR_436917 TTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10639268;END=10639282;PERIOD=5;NSKIP=0;NFILT=0;DP=142;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:142:0:0:0:71.00|71.00:0|0:.:0:.:0:0|88:0|88:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
272 chr21 10742169 GANGSTR_436920 AGGCAGGCAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=10742169;END=10742180;PERIOD=4;NSKIP=0;NFILT=0;DP=316;DSNP=0;DSTUTTER=0;DFLANKINDEL=28;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:316:0:0:28:98.56|217.44:0|0:.:0:.:0:0|249:0|222:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
273 chr21 10766788 GANGSTR_436921 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10766788;END=10766799;PERIOD=3;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=7;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:7:39.50|39.50:0|0:.:0:.:0:0|50:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
274 chr21 10772277 GANGSTR_436922 AGGCAGGCAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=10772277;END=10772288;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
275 chr21 10862116 GANGSTR_436924 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10862116;END=10862127;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
276 chr21 10868844 GANGSTR_436925 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10868844;END=10868855;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
277 chr21 10873878 GANGSTR_436926 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10873878;END=10873893;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
278 chr21 10880831 GANGSTR_436927 AGGCAGGCAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=10880831;END=10880842;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:1:23.50|23.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
279 chr21 10881968 GANGSTR_436928 AAATTAAATTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=10881968;END=10881982;PERIOD=5;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
280 chr21 10882325 GANGSTR_436929 ATAGATAGATAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=10882325;END=10882336;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
281 chr21 10888705 GANGSTR_436931 AGGAGGAGGAGGGA AGGAGGAGGGG . . INFRAME_PGEOM=0.97;INFRAME_UP=0.02;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.94;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.06;START=10888705;END=10888716;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=80;DSNP=0;DSTUTTER=5;DFLANKINDEL=12;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-3:1:0.5:80:0:5:12:67.15|12.85:0|0:11.69:-11.24:72:-0.34:-3|5;-1|3;0|43:-3|6;0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
282 chr21 10891579 GANGSTR_436932 ATATATTATTATTATC ATATATTATTATT,ACATATTATTATTATC . . INFRAME_PGEOM=0.96;INFRAME_UP=0.03;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=10891582;END=10891593;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3,0;DP=113;DSNP=0;DSTUTTER=7;DFLANKINDEL=8;AN=2;REFAC=0;AC=1,1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 2|1:0|-3:1:0.5:113:0:7:8:71.17|41.83:0|0:23.34:-2.26:110:-0.79:-6|5;-5|3;-3|22;0|44:-6|5;-3|22;0|40;6|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
283 chr21 10898044 GANGSTR_436935 TTCAGTTCAGTTCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10898044;END=10898058;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
284 chr21 10902624 GANGSTR_436936 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10902624;END=10902635;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
285 chr21 10910936 GANGSTR_436938 CTTTTCTTTTCTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.02;START=10910936;END=10910950;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:2:30.50|30.50:0|0:.:0:.:0:0|38;1|1:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
286 chr21 10916040 GANGSTR_436939 TCCTCCTCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10916040;END=10916051;PERIOD=3;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
287 chr21 10917405 GANGSTR_436940 AAAACAAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=10917405;END=10917429;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:1:35.00|35.00:0|0:.:0:.:0:-22|1;0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
288 chr21 10918476 GANGSTR_436941 TTTGTTTTGTTTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=10918476;END=10918500;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|20:0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
289 chr21 10919624 GANGSTR_436942 ACACACACACACACACACACACACACAC . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.03;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=10919624;END=10919651;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:2:0:27.00|27.00:0|0:.:0:.:0:-2|2;0|32:-2|2;0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
290 chr21 10920272 GANGSTR_436943 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10920272;END=10920287;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|44:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
291 chr21 10920901 GANGSTR_436944 ACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10920901;END=10920914;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
292 chr21 10923826 GANGSTR_436945 AGAGAAAGAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10923826;END=10923837;PERIOD=6;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|46:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
293 chr21 10927542 GANGSTR_436946 ACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.08;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=10927542;END=10927577;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=53;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:53:0:1:1:27.64|25.36:0|0:3.72:-0.16:25:-0.16:-4|1;-2|9;0|13:-4|1;-2|9;0|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
294 chr21 10930706 GANGSTR_436947 CAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=10930706;END=10930720;PERIOD=5;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
295 chr21 10937719 GANGSTR_436948 CACTCACTCACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10937719;END=10937730;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
296 chr21 10947898 GANGSTR_436949 TTTTGGTTTTGGTTTTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10947898;END=10947915;PERIOD=6;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|40:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
297 chr21 10951439 GANGSTR_436950 AAATAAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10951439;END=10951462;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
298 chr21 10956397 GANGSTR_436951 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10956397;END=10956408;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
299 chr21 10958832 GANGSTR_436952 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10958832;END=10958846;PERIOD=5;NSKIP=0;NFILT=0;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:78:0:0:0:39.00|39.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
300 chr21 10965881 GANGSTR_436953 TGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10965881;END=10965895;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
301 chr21 10972424 GANGSTR_436955 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10972424;END=10972435;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
302 chr21 10977999 GANGSTR_436956 AAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10977999;END=10978008;PERIOD=5;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|58:0|58:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
303 chr21 10990536 GANGSTR_436957 GGAGGGAGGGAGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=10990536;END=10990551;PERIOD=4;NSKIP=0;NFILT=0;DP=30;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:30:0:0:1:15.00|15.00:0|0:.:0:.:0:0|20:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
304 chr21 10993858 GANGSTR_436959 TTTGTTTGTTTGTTTGTTTGTTTGTTTG TTTGTTTGTTTGTTTGTTTGTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=10993858;END=10993885;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:58:0:0:1:29.00|29.00:0|0:10.39:0:.:0:-4|34:-4|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
305 chr21 10995180 GANGSTR_436960 ATAATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10995180;END=10995194;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
306 chr21 10997578 GANGSTR_436961 TAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=10997578;END=10997585;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
307 chr21 11009122 GANGSTR_436962 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=11009122;END=11009133;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
308 chr21 11009830 GANGSTR_436963 CTCACTCACTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=11009830;END=11009841;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
309 chr21 11014719 GANGSTR_436964 AAAACAAAACAAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=11014719;END=11014748;PERIOD=5;NSKIP=0;NFILT=0;DP=125;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:125:0:0:0:62.50|62.50:0|0:.:0:.:0:0|78:0|78:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
310 chr21 11023668 GANGSTR_436965 ATCATCATCATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=11023668;END=11023679;PERIOD=3;NSKIP=0;NFILT=0;DP=343;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:343:0:0:0:171.50|171.50:0|0:.:0:.:0:0|265:0|254:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
311 chr21 11026115 GANGSTR_436966 TATATATATATATATATATATATA TATATATATATA,TATATATATATATATATATA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.04;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=11026115;END=11026138;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-12,-4;DP=126;DSNP=0;DSTUTTER=3;DFLANKINDEL=3;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-12|-4:1:0.5:126:0:3:3:64.05|61.95:0|0:117.91:-0.03:112:-0.62:-12|48;-6|1;-4|39;-2|2:-12|47;-6|1;-4|38;-2|2:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
312 chr21 11034655 GANGSTR_436968 AAATAAAATAAAG AAATAAAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=11034655;END=11034664;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=322;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:322:0:0:0:116.06|205.94:0|0:493.1:-6.87:283:0:-4|160;0|73:-4|170;0|73:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
313 chr21 11066832 GANGSTR_436973 AGTAAAAAAGAAAGTAAG AATAA,AATAAAAAAGAAAGTAAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=11066838;END=11066845;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-13,0;DP=317;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=6;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-13|0:1:0.5:317:0:0:2:71.91|245.09:0|0:195.83:-28.93:256:-0.15:-13|38;0|187:-13|98;0|183:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
314 chr21 11069981 GANGSTR_436975 ATTTATTTATTT ATTTATTCATTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=11069981;END=11069992;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=538;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|0:0|0:1:0.5:538:0:0:2:226.10|311.90:0|0:709.03:-4.03:476:0:0|366:0|357:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
315 chr21 11070463 GANGSTR_436976 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=11070463;END=11070477;PERIOD=5;NSKIP=0;NFILT=0;DP=537;DSNP=0;DSTUTTER=1;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:537:0:1:3:193.18|343.82:0|0:.:0:.:0:0|325;3|1:0|325:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
316 chr21 11076696 GANGSTR_436978 CCCACACACACACACA CACACACACACACACA . . INFRAME_PGEOM=0.51;INFRAME_UP=0.08;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=11076698;END=11076711;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=635;DSNP=0;DSTUTTER=76;DFLANKINDEL=12;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:635:0:76:12:318.66|316.34:0|0:576.58:0:.:0:-8|24;-2|6;0|406;2|40:-8|22;-2|6;0|366;2|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
317 chr21 11077556 GANGSTR_436979 AAATAAATAAATAAATAAATAAATAAATAAAT AAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT,AAATAAATAAATACATACATAAATAAATAAATACATAAAT . . INFRAME_PGEOM=0.87;INFRAME_UP=0.28;INFRAME_DOWN=0.35;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=11077556;END=11077587;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=8,8;DP=432;DSNP=0;DSTUTTER=175;DFLANKINDEL=25;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:8|8:1:0.5:432:0:175:25:344.31|87.69:0|0:37.38:-36.48:428:-5.86:-34|2;-21|2;-18|1;-14|2;-12|5;-10|1;0|21;1|6;2|3;3|2;4|39;5|2;6|7;8|42;10|1;12|32;14|1;16|6:-12|5;0|17;4|38;8|41;12|31;16|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
318 chr21 11079489 GANGSTR_436980 AATGAAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=11079489;END=11079498;PERIOD=5;NSKIP=0;NFILT=0;DP=605;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:605:0:0:1:277.97|327.03:0|0:.:0:.:0:-5|1;0|428:0|428:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
319 chr21 11091729 GANGSTR_436982 ACACACACACAC . . . INFRAME_PGEOM=0.99;INFRAME_UP=0.01;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=11091729;END=11091740;PERIOD=2;NSKIP=0;NFILT=0;DP=271;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:271:0:3:0:106.99|164.01:0|0:.:0:.:0:-2|3;0|189:-2|3;0|178:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
320 chr21 11094028 GANGSTR_436983 AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT AAATAAATAAATAAATAAAA,AAATAAATAAATAAATAAATAAATAAATAAATAAAT . . INFRAME_PGEOM=0.5;INFRAME_UP=0.49;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=11094028;END=11094075;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-28,-12;DP=540;DSNP=0;DSTUTTER=149;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-28|-12:1:0.5:540:0:149:1:326.09|213.91:0|0:37.04:-6.12:438:-0.37:-28|84;-20|26;-12|14;-10|2;-8|25;-7|1;-4|18;-2|1;0|10;4|1:-28|90;-20|26;-12|14;-8|23;-4|17;0|9;4|2:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
321 chr21 11097140 GANGSTR_436985 AAAGAAAG AAATAAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=11097140;END=11097147;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=342;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:342:0:0:0:55.02|286.98:0|0:309.04:-39.96:330:-0.79:0|255:0|243:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
322 chr21 11101286 GANGSTR_436986 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=11101286;END=11101297;PERIOD=3;NSKIP=0;NFILT=0;DP=307;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:307:0:0:2:153.50|153.50:0|0:.:0:.:0:0|248:0|239:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
323 chr21 11105548 GANGSTR_436987 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=11105548;END=11105559;PERIOD=4;NSKIP=0;NFILT=0;DP=204;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:204:0:0:0:102.00|102.00:0|0:.:0:.:0:0|139:0|137:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
324 chr21 11106325 GANGSTR_436988 ATATATACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.8;INFRAME_UP=0.18;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.01;START=11106331;END=11106368;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=289;DSNP=0;DSTUTTER=97;DFLANKINDEL=29;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:289:0:97:29:106.44|182.56:0|0:336.8:-6.56:206:-0.43:-18|2;-16|36;-14|24;-6|1;-2|1;0|91;1|2;2|9;4|1;8|1:-16|33;-14|1;-12|6;-4|27;-2|12;0|24;2|26;4|3;8|4:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
325 chr21 11109765 GANGSTR_436991 GGGGAGGGGAGGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=11109765;END=11109779;PERIOD=5;NSKIP=0;NFILT=0;DP=446;DSNP=0;DSTUTTER=0;DFLANKINDEL=52;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:446:0:0:52:68.04|377.96:0|0:.:0:.:0:0|284:0|269:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
326 chr21 11110680 GANGSTR_436992 TGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTT TGCTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTT,TGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.25;INFRAME_DOWN=0.28;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=11110680;END=11110729;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-15,-5;DP=598;DSNP=0;DSTUTTER=187;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-15|-5:1:0.5:598:0:187:0:237.26|360.74:0|0:100.49:-11.29:474:-0.3:-20|55;-15|68;-10|55;-5|43;0|18:-20|55;-15|68;-10|56;-5|43;0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
327 chr21 11111799 GANGSTR_436993 CCTCCTCCTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=1;OUTFRAME_UP=0;OUTFRAME_DOWN=0.01;START=11111799;END=11111810;PERIOD=3;NSKIP=0;NFILT=0;DP=502;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:502:0:0:2:65.12|436.88:0|0:.:0:.:0:-1|1;0|405:0|392:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
328 chr21 11112438 GANGSTR_436994 AAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=11112438;END=11112452;PERIOD=5;NSKIP=0;NFILT=0;DP=595;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:595:0:0:3:337.72|257.28:0|0:.:0:.:0:0|352:0|352:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
329 chr21 11113686 GANGSTR_436995 GGTGGTGGT GGTGGGGGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=11113686;END=11113694;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=436;DSNP=0;DSTUTTER=2;DFLANKINDEL=46;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:436:0:2:46:215.37|220.63:0|0:539.64:-0.11:415:-0.38:0|340:0|321:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
330 chr21 11115952 GANGSTR_436997 ACAGACAGACAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=11115952;END=11115963;PERIOD=4;NSKIP=0;NFILT=0;DP=530;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:530:0:0:0:288.49|241.51:0|0:.:0:.:0:0|382:0|372:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
331 chr21 11118794 GANGSTR_436999 TTGTTGTTGTTGTTG . . . INFRAME_PGEOM=1;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=11118794;END=11118808;PERIOD=3;NSKIP=0;NFILT=0;DP=648;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:648:0:1:0:324.00|324.00:0|0:.:0:.:0:-3|1;0|453:-3|1;0|434:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
332 chr21 11125446 GANGSTR_437001 TTTGTTTGTTTGTG TTTGTTTGTTTGT,TTTGTTTGTTTGTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.96;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=11125446;END=11125457;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-1,0;DP=431;DSNP=0;DSTUTTER=25;DFLANKINDEL=30;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-1|0:1:0.5:431:0:25:30:210.71|220.29:0|0:352.79:-0.03:429:-0.03:-1|125;0|180:-5|25;-1|135;0|141:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
333 chr21 11129188 GANGSTR_437005 ATTTATTTATTTATTTATTT ATTTATTTATTTATCTATTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.94;OUTFRAME_UP=0;OUTFRAME_DOWN=0.01;START=11129188;END=11129207;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=506;DSNP=0;DSTUTTER=0;DFLANKINDEL=6;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:506:0:0:6:294.66|211.34:0|0:680.14:-3.88:463:-1.14:-1|2;0|324;8|1:0|320:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
334 chr21 11129581 GANGSTR_437006 TGATTTATTTATTTATTTATTT TCATTTATTATTTATTTATTT,TCATTTATTTATTTATTTATTT . . INFRAME_PGEOM=0.98;INFRAME_UP=0.01;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.93;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0;START=11129583;END=11129602;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-1,0;DP=574;DSNP=0;DSTUTTER=18;DFLANKINDEL=42;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 2|1:0|-1:1:0.5:574:0:18:42:369.09|204.91:0|0:911.18:-14.49:492:-0.25:-8|1;-1|114;0|218;4|11:-1|113;0|205;4|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
335 chr21 11130539 GANGSTR_437008 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=11130539;END=11130550;PERIOD=4;NSKIP=0;NFILT=0;DP=598;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:598:0:0:2:342.22|255.78:0|0:.:0:.:0:0|414:0|402:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
336 chr21 11132278 GANGSTR_437009 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=11132278;END=11132289;PERIOD=4;NSKIP=0;NFILT=0;DP=457;DSNP=0;DSTUTTER=0;DFLANKINDEL=20;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:457:0:0:20:218.14|238.86:0|0:.:0:.:0:0|317:0|308:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
337 chr21 11138349 GANGSTR_437013 ATGTTATGTTATGTT AAGTTATGTTATGTT,ACGTTATGTTATGTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=11138349;END=11138363;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0,0;DP=558;DSNP=0;DSTUTTER=5;DFLANKINDEL=20;AN=2;REFAC=0;AC=1,1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:0|0:1:0.5:558:0:5:20:274.32|283.68:0|0:611.04:-0.16:423:-0.26:0|343:0|342:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
338 chr21 11143230 GANGSTR_437016 TAGATAGGTAGATAGG TACATAGGTAGATAGG . . INFRAME_PGEOM=0.97;INFRAME_UP=0;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=11143230;END=11143245;PERIOD=8;NSKIP=0;NFILT=0;BPDIFFS=0;DP=591;DSNP=0;DSTUTTER=28;DFLANKINDEL=83;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:591:0:28:83:482.04|108.96:0|0:40.85:-77.76:458:-0.13:-20|1;-17|1;-8|26;-4|63;0|277:-8|24;0|338:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
339 chr21 11143547 GANGSTR_437017 CTGCTGCTGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=11143547;END=11143558;PERIOD=3;NSKIP=0;NFILT=0;DP=596;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:596:0:0:1:298.00|298.00:0|0:.:0:.:0:0|455:0|428:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
340 chr21 11145691 GANGSTR_437018 GCATGCATGCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=11145691;END=11145702;PERIOD=4;NSKIP=0;NFILT=0;DP=483;DSNP=0;DSTUTTER=0;DFLANKINDEL=12;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:483:0:0:12:241.50|241.50:0|0:.:0:.:0:0|335:0|330:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
341 chr21 11146561 GANGSTR_437019 AAAACAAAACA AAAACAAAACG . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=11146561;END=11146570;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=583;DSNP=0;DSTUTTER=0;DFLANKINDEL=6;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:583:0:0:6:469.62|113.38:0|0:184.85:-60.56:517:-0.65:0|427:0|424:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
342 chr21 11183954 GANGSTR_437022 GCAAGCAAGCAAA GCAAGCAAGCAAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0;INFRAME_DOWN=0;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=11183954;END=11183965;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=281;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:281:0:0:0:105.98|175.02:0|0:331.19:-4.7:257:-0.71:0|215:0|213:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
343 chr21 14372392 GANGSTR_437026 TTATTTATTTATTTATTTATTTATTTATTTATTTAT TTATTTATTTATTTATTTATTTAT . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14372392;END=14372427;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-12;DP=93;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-12:1:0.5:93:0:1:2:36.49|56.51:0|0:78.96:-2.11:52:0:-21|1;-16|1;-12|34;0|9:-16|1;-12|31;0|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
344 chr21 14374096 GANGSTR_437027 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=14374096;END=14374107;PERIOD=4;NSKIP=0;NFILT=0;DP=114;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:114:0:0:0:57.00|57.00:0|0:.:0:.:0:0|79:0|76:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
345 chr21 14383029 GANGSTR_437028 TTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.98;INFRAME_UP=0.06;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=14383029;END=14383043;PERIOD=3;NSKIP=0;NFILT=0;DP=117;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:117:0:0:4:58.50|58.50:0|0:.:0:.:0:0|72;3|4:0|68:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
346 chr21 14384512 GANGSTR_437029 CACTCCACTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14384512;END=14384521;PERIOD=5;NSKIP=0;NFILT=0;DP=81;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:81:0:0:1:40.50|40.50:0|0:.:0:.:0:0|62:0|62:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
347 chr21 14390199 GANGSTR_437030 TGGTGAGTGTGTGTGTGTGT TAGTGAGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14390205;END=14390218;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=67;DSNP=0;DSTUTTER=1;DFLANKINDEL=4;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:67:0:1:4:54.53|12.47:0|0:6:-8.49:54:-0.65:-2|1;0|50:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
348 chr21 14405799 GANGSTR_437032 ACCCACCCACCC ACCCGCCCACCC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=14405799;END=14405810;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=109;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:109:0:0:0:53.24|55.76:0|0:141.35:-0.04:98:-0.53:0|83:0|81:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
349 chr21 14407537 GANGSTR_437033 AACAACAACAACAAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.01;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=14407537;END=14407551;PERIOD=3;NSKIP=0;NFILT=0;DP=134;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:134:0:1:0:67.00|67.00:0|0:.:0:.:0:-3|1;0|101:-3|1;0|98:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
350 chr21 14410775 GANGSTR_437034 AGGAGGAGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=14410775;END=14410789;PERIOD=3;NSKIP=0;NFILT=0;DP=104;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:104:0:0:0:52.00|52.00:0|0:.:0:.:0:0|80:0|76:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
351 chr21 14412129 GANGSTR_437036 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=14412129;END=14412144;PERIOD=4;NSKIP=0;NFILT=0;DP=134;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:134:0:0:0:67.00|67.00:0|0:.:0:.:0:0|76:0|75:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
352 chr21 14420359 GANGSTR_437037 AGTAGTAGTAGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=14420359;END=14420370;PERIOD=3;NSKIP=0;NFILT=0;DP=96;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:96:0:0:0:50.00|46.00:0|0:.:0:.:0:0|63:0|60:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
353 chr21 14421096 GANGSTR_437038 TCTTTCTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=14421096;END=14421107;PERIOD=4;NSKIP=0;NFILT=0;DP=131;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:131:0:0:0:65.50|65.50:0|0:.:0:.:0:0|104:0|102:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
354 chr21 14436063 GANGSTR_437039 ATATCATATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=14436063;END=14436072;PERIOD=5;NSKIP=0;NFILT=0;DP=103;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:103:0:0:0:62.51|40.49:0|0:.:0:.:0:0|80:0|80:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
355 chr21 14448825 GANGSTR_437041 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14448825;END=14448836;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:3:31.50|31.50:0|0:.:0:.:0:0|50:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
356 chr21 14451843 GANGSTR_437042 TATTATATTATATTA TATTATATTGTATTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.02;START=14451843;END=14451857;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:80:0:0:1:60.95|19.05:0|0:45.08:-6.18:72:-2.94:0|50;1|1:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
357 chr21 14455955 GANGSTR_437043 CCTTCCTTCCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14455955;END=14455966;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
358 chr21 14459980 GANGSTR_437044 GTGTGTGTGTGTGTGTGTGTGT . . . INFRAME_PGEOM=0.98;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14459980;END=14460001;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:2:0:30.00|30.00:0|0:.:0:.:0:-2|1;0|37;2|1:-2|1;0|33;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
359 chr21 14460471 GANGSTR_437045 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14460471;END=14460482;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:5:33.50|33.50:0|0:.:0:.:0:0|45:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
360 chr21 14479135 GANGSTR_437046 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14479135;END=14479150;PERIOD=4;NSKIP=0;NFILT=0;DP=87;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:87:0:0:1:43.50|43.50:0|0:.:0:.:0:0|55:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
361 chr21 14486118 GANGSTR_437047 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14486118;END=14486129;PERIOD=2;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|49:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
362 chr21 14489503 GANGSTR_437048 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14489503;END=14489514;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
363 chr21 14491528 GANGSTR_437049 TGGATGGATGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14491528;END=14491539;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|51:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
364 chr21 14493633 GANGSTR_437050 TTTTGTTTTGTTTTG TTTGTTTTGTTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.97;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.13;START=14493633;END=14493647;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=86;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:86:0:0:0:69.50|16.50:0|0:56.39:-10.13:71:0:-1|7;0|54:-1|7;0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
365 chr21 14504617 GANGSTR_437051 GCCTGCCTGCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14504617;END=14504628;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
366 chr21 14510230 GANGSTR_437052 AATAAAATAAAATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14510230;END=14510249;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
367 chr21 14518023 GANGSTR_437053 ACAAACATATATATATAT ATAAACATATATATATAT . . INFRAME_PGEOM=0.53;INFRAME_UP=0.04;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=14518029;END=14518040;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=109;DSNP=0;DSTUTTER=22;DFLANKINDEL=12;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:109:0:22:12:81.38|27.62:0|0:66.39:-7.26:100:-2.21:-4|17;-2|1;0|77;8|1:-4|16;-2|3;0|72:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
368 chr21 14522580 GANGSTR_437054 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.94;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.07;START=14522580;END=14522591;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=8;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:8:31.50|31.50:0|0:.:0:.:0:-1|2;0|37:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
369 chr21 14537958 GANGSTR_437055 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14537958;END=14537969;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
370 chr21 14545785 GANGSTR_437056 GTTGGTTGGTTGGTTGGTTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14545785;END=14545804;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:1:0:32.00|32.00:0|0:.:0:.:0:-4|1;0|41:-4|1;0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
371 chr21 14549467 GANGSTR_437057 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14549467;END=14549478;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|53:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
372 chr21 14566639 GANGSTR_437058 TCTATCTATCTATCTATCTATCTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14566639;END=14566662;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:1:36.50|36.50:0|0:.:0:.:0:0|26:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
373 chr21 14575071 GANGSTR_437060 ATCATCATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14575071;END=14575079;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|53:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
374 chr21 14585351 GANGSTR_437061 TTTAATTTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14585351;END=14585360;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
375 chr21 14588039 GANGSTR_437062 TTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14588039;END=14588058;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
376 chr21 14592911 GANGSTR_437063 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14592911;END=14592922;PERIOD=3;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|59:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
377 chr21 14592980 GANGSTR_437064 TTCTTCTTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14592980;END=14592991;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
378 chr21 14593612 GANGSTR_437065 TAGTAGTAGTAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14593612;END=14593623;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
379 chr21 14594686 GANGSTR_437066 AATACAATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14594686;END=14594695;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
380 chr21 14600890 GANGSTR_437067 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14600890;END=14600901;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
381 chr21 14602088 GANGSTR_437068 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14602088;END=14602099;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
382 chr21 14611222 GANGSTR_437069 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14611222;END=14611241;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
383 chr21 14611291 GANGSTR_437070 AACAAACAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14611291;END=14611302;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
384 chr21 14615039 GANGSTR_437071 GATTGATTGATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14615039;END=14615050;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
385 chr21 14616537 GANGSTR_437072 CAAAACAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14616537;END=14616556;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
386 chr21 14619083 GANGSTR_437074 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.58;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14619083;END=14619116;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-8;DP=60;DSNP=0;DSTUTTER=1;DFLANKINDEL=3;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-8|-8:1:1:60:0:1:3:30.00|30.00:0|0:11.26:0:.:0:-10|1;-8|36;0|1:-8|32;-4|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
387 chr21 14621213 GANGSTR_437075 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14621213;END=14621224;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
388 chr21 14622602 GANGSTR_437076 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14622602;END=14622613;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:1:1:28.00|28.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
389 chr21 14622940 GANGSTR_437077 CATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14622940;END=14622951;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
390 chr21 14624176 GANGSTR_437078 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14624176;END=14624187;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
391 chr21 14629200 GANGSTR_437079 TTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14629200;END=14629209;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
392 chr21 14630330 GANGSTR_437080 AATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14630330;END=14630339;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
393 chr21 14631982 GANGSTR_437081 TGAATTGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14631982;END=14631991;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
394 chr21 14634674 GANGSTR_437082 TCTTTCTTTCTT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14634674;END=14634685;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:1:0:28.00|28.00:0|0:.:0:.:0:-4|1;0|36:-4|1;0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
395 chr21 14635266 GANGSTR_437083 TATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14635266;END=14635281;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
396 chr21 14637258 GANGSTR_437084 TAAATTAAATTAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14637258;END=14637272;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
397 chr21 14637502 GANGSTR_437085 GTTGCTGTTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14637502;END=14637513;PERIOD=6;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|37:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
398 chr21 14640145 GANGSTR_437086 AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT AAATAAATAAATAAATAAATAAATAAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=14640145;END=14640188;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-16;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-16|-16:1:1:52:0:0:0:26.00|26.00:0|0:7.44:0:.:0:-16|19:-16|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
399 chr21 14641002 GANGSTR_437087 ACACACACACACACACACACACACAC ACACACACACACACACACACATAC,ACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.63;INFRAME_UP=0.02;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14641002;END=14641027;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,2;DP=70;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|2:1:0.5:70:0:1:1:3.09|66.91:0|0:9.69:-16.01:70:0:-2|3;0|4;2|35:-2|3;0|1;2|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
400 chr21 14642233 GANGSTR_437088 TTTGGTTTGGTTTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14642233;END=14642247;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
401 chr21 14642397 GANGSTR_437089 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14642397;END=14642408;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
402 chr21 14644275 GANGSTR_437090 ATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14644275;END=14644282;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
403 chr21 14655131 GANGSTR_437093 CCATAACAACAACAAC CAACAACAACAACAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14655135;END=14655146;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:75:0:0:0:62.00|13.00:0|0:50.01:-8.86:69:-2.92:0|61:0|61:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
404 chr21 14655606 GANGSTR_437094 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14655606;END=14655617;PERIOD=2;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=6;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:6:34.50|34.50:0|0:.:0:.:0:0|59:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
405 chr21 14662943 GANGSTR_437095 TTCTTCTTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14662943;END=14662954;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
406 chr21 14663818 GANGSTR_437096 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14663818;END=14663829;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
407 chr21 14665366 GANGSTR_437097 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=14665366;END=14665377;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|23:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
408 chr21 14669166 GANGSTR_437098 ATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14669166;END=14669173;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|51:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
409 chr21 14673306 GANGSTR_437099 TTAGTTTAGTTTAGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14673306;END=14673320;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
410 chr21 14674077 GANGSTR_437100 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.93;INFRAME_UP=0.04;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.58;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.03;START=14674077;END=14674112;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2,7;DP=57;DSNP=0;DSTUTTER=18;DFLANKINDEL=3;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:2|7:0.91:0.45:57:0:18:3:47.52|9.48:0|0:0.99:-8.79:44:-0.24:-6|1;-5|1;-2|1;0|18;2|10;7|2:-2|1;0|14;2|8;4|1;5|1;7|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
411 chr21 14676745 GANGSTR_437101 GTATTAGTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14676745;END=14676756;PERIOD=6;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
412 chr21 14687227 GANGSTR_437102 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14687227;END=14687238;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:37.50|27.50:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
413 chr21 14688294 GANGSTR_437103 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14688294;END=14688305;PERIOD=2;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|30:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
414 chr21 14694921 GANGSTR_437104 ATATATATATATATAT AAATATATATATATAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14694921;END=14694936;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:66:0:0:1:29.75|36.25:0|0:68.39:-0.3:56:-0.53:0|44:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
415 chr21 14695797 GANGSTR_437105 ATATATATATATATATATATATAT . . . INFRAME_PGEOM=0.83;INFRAME_UP=0.04;INFRAME_DOWN=0.24;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=14695797;END=14695820;PERIOD=2;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=8;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:8:1:25.03|15.97:0|0:.:0:.:0:-21|2;-4|1;-2|4;0|14:-4|1;-2|4;0|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
416 chr21 14704153 GANGSTR_437106 CAGCACAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14704153;END=14704162;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:21.00|29.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
417 chr21 14705968 GANGSTR_437107 AAGAAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14705968;END=14705977;PERIOD=5;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
418 chr21 14707345 GANGSTR_437108 TTTCTTTCTTTCTTTCTTTC TTTCTTTCTTTCTTTCTTTCTTTT . . INFRAME_PGEOM=0.93;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14707345;END=14707364;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:78:0:0:0:41.37|36.63:0|0:63.45:-0.22:59:-0.1:-2|1;0|27;4|15:0|23;4|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
419 chr21 14711357 GANGSTR_437109 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14711357;END=14711368;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
420 chr21 14711658 GANGSTR_437110 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14711658;END=14711669;PERIOD=3;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|55:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
421 chr21 14711967 GANGSTR_437111 TATGTGTATGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14711967;END=14711978;PERIOD=6;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
422 chr21 14714287 GANGSTR_437112 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14714287;END=14714298;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|27:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
423 chr21 14715101 GANGSTR_437113 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14715101;END=14715112;PERIOD=4;NSKIP=0;NFILT=0;DP=83;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:83:0:0:0:41.50|41.50:0|0:.:0:.:0:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
424 chr21 14717698 GANGSTR_437114 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14717698;END=14717709;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
425 chr21 14718738 GANGSTR_437115 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14718738;END=14718753;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
426 chr21 14721278 GANGSTR_437116 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14721278;END=14721289;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
427 chr21 14722747 GANGSTR_437117 TGTTTGTTTGTTTGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14722747;END=14722770;PERIOD=4;NSKIP=0;NFILT=0;DP=81;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:81:0:0:0:40.50|40.50:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
428 chr21 14723343 GANGSTR_437118 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14723343;END=14723354;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|51:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
429 chr21 14723928 GANGSTR_437119 TTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14723928;END=14723937;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
430 chr21 14727526 GANGSTR_437120 GTTTGTTTGTTTGTTTT GTTTGTTTGTTTGTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14727526;END=14727541;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:71:0:0:0:57.49|13.51:0|0:14.67:-8.28:60:-0.58:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
431 chr21 14729563 GANGSTR_437121 ACAACAACAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14729563;END=14729574;PERIOD=3;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|54:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
432 chr21 14734389 GANGSTR_437122 TTCATTCATTCATTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14734389;END=14734412;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
433 chr21 14736160 GANGSTR_437123 CTCCTCCTCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14736160;END=14736171;PERIOD=3;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|54:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
434 chr21 14737403 GANGSTR_437124 AATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14737403;END=14737417;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|46:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
435 chr21 14740827 GANGSTR_437125 GGGTGGGTGGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=14740827;END=14740838;PERIOD=4;NSKIP=0;NFILT=0;DP=19;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:19:0:0:2:9.50|9.50:0|0:.:0:.:0:0|10:0|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
436 chr21 14747449 GANGSTR_437127 TTTGGTTTGGTTTGGTTTGGTTTTT TTTGGTTTGGTTTGGTTTGGTTTTC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.82;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.07;START=14747449;END=14747468;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=68;DSNP=0;DSTUTTER=1;DFLANKINDEL=6;AN=2;REFAC=1;AC=1;HRUN=5;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:68:0:1:6:37.46|30.54:0|0:65.21:-0.42:47:-0.27:-1|2;0|33;2|1:-10|1;0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
437 chr21 14747996 GANGSTR_437128 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=14747996;END=14748007;PERIOD=3;NSKIP=0;NFILT=0;DP=136;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:136:0:0:1:68.00|68.00:0|0:.:0:.:0:-14|1;0|89:0|87:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
438 chr21 14754041 GANGSTR_437129 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.73;INFRAME_UP=0.08;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=14754041;END=14754076;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=49;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:49:0:3:0:24.50|24.50:0|0:4.51:0:.:0:-39|1;-4|22;0|1:-4|20;0|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
439 chr21 14761682 GANGSTR_437130 TATGATATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14761682;END=14761691;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
440 chr21 14761958 GANGSTR_437131 AACAAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14761958;END=14761967;PERIOD=5;NSKIP=0;NFILT=0;DP=33;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:33:0:0:0:16.50|16.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
441 chr21 14771264 GANGSTR_437132 AACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14771264;END=14771278;PERIOD=3;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
442 chr21 14771846 GANGSTR_437133 ACAACAACAACAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14771846;END=14771860;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:28.00|36.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
443 chr21 14773870 GANGSTR_437134 GTTTATTTATTTA GCTTATTTATTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14773871;END=14773882;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:59:0:0:0:31.98|27.02:0|0:77.17:-0.25:49:-0.25:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
444 chr21 14776014 GANGSTR_437135 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14776014;END=14776025;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|42:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
445 chr21 14784962 GANGSTR_437136 TTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14784962;END=14784981;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
446 chr21 14785451 GANGSTR_437137 CACACACACACACACACT CACACACGCACACACACA . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14785451;END=14785466;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=81;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:81:0:3:0:60.75|20.25:0|0:36.42:-5.25:81:-3.38:-2|2;0|52:-2|2;0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
447 chr21 14786467 GANGSTR_437138 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14786467;END=14786482;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
448 chr21 14788479 GANGSTR_437139 AAATAAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14788479;END=14788488;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.50|33.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
449 chr21 14797975 GANGSTR_437140 CACACACACACACACACACACACACACACACACACACACACTC CACACACACACACACACACACACACACACTT . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14797975;END=14798014;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-12;DP=66;DSNP=0;DSTUTTER=5;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-12:1:0.5:66:0:5:0:29.75|36.25:0|0:262.91:-0.3:56:-1.19:-14|2;-12|19;-2|2;0|17:-14|2;-12|19;-2|2;0|15;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
450 chr21 14801248 GANGSTR_437141 TTGCTTTGCTTTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14801248;END=14801262;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
451 chr21 14803472 GANGSTR_437142 TAAAATAAAATAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14803472;END=14803486;PERIOD=5;NSKIP=0;NFILT=0;DP=82;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:82:0:0:0:41.00|41.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
452 chr21 14804976 GANGSTR_437143 AGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAG . . INFRAME_PGEOM=0.48;INFRAME_UP=0.19;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14804976;END=14805001;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=61;DSNP=0;DSTUTTER=5;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:61:0:5:1:30.12|30.88:0|0:4.95:-0.14:33:-0.14:-4|1;-2|13;0|12;4|1;6|4:-4|1;-2|12;0|11;4|1;6|3:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
453 chr21 14806392 GANGSTR_437144 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14806392;END=14806403;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|40:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
454 chr21 14810231 GANGSTR_437145 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14810231;END=14810242;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:23.52|26.48:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
455 chr21 14816648 GANGSTR_437146 AACAACAACAACAACAAC AACAACAACAACAACAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14816648;END=14816665;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:60:0:0:0:32.51|27.49:0|0:86.21:-0.24:51:-0.58:0|39:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
456 chr21 14818014 GANGSTR_437147 CAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=14818014;END=14818028;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|18:0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
457 chr21 14818105 GANGSTR_437148 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14818105;END=14818116;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
458 chr21 14822239 GANGSTR_437149 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14822239;END=14822253;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
459 chr21 14824629 GANGSTR_437150 TTCTTCTTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14824629;END=14824640;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:30.00|25.00:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
460 chr21 14827722 GANGSTR_437151 AATAATAATAAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14827722;END=14827733;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:34.00|31.00:0|0:.:0:.:0:0|41;3|1:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
461 chr21 14835076 GANGSTR_437152 AGGAGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14835076;END=14835087;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
462 chr21 14839482 GANGSTR_437153 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14839482;END=14839493;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
463 chr21 14850905 GANGSTR_437154 CTCACACACACACACACACACACACACACACACA CACACACACACACACACACACACACACACACATACA,CTCTCACACACACACACACACACACACACACATACA . . INFRAME_PGEOM=0.99;INFRAME_UP=0.08;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14850907;END=14850938;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2,2;DP=73;DSNP=0;DSTUTTER=4;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:2|2:1:0.5:73:0:4:0:38.51|34.49:0|0:126.57:-0.16:58:-0.1:0|21;2|17:0|2;2|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
464 chr21 14863674 GANGSTR_437157 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14863674;END=14863685;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.00|23.00:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
465 chr21 14864122 GANGSTR_437158 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14864122;END=14864133;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
466 chr21 14876316 GANGSTR_437159 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14876316;END=14876327;PERIOD=2;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|54:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
467 chr21 14876566 GANGSTR_437160 ATATATATATAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14876566;END=14876577;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:1:0:31.50|28.50:0|0:.:0:.:0:0|43;2|1:0|39;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
468 chr21 14877013 GANGSTR_437161 TTTTCTTTTCTTTTCTTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14877013;END=14877037;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
469 chr21 14877330 GANGSTR_437162 TTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14877330;END=14877339;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
470 chr21 14879955 GANGSTR_437163 GCCCTTTCTTTCTTT GCCCTTTCTTT,GTCCTTTCTTTCTTT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.05;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14879958;END=14879969;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4,0;DP=56;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|0:1:0.5:56:0:1:0:25.47|30.53:0|0:26.92:-0.24:51:-0.11:-4|20;0|21:-4|20;0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
471 chr21 14880702 GANGSTR_437164 CATCCATCCATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14880702;END=14880713;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
472 chr21 14882948 GANGSTR_437165 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14882948;END=14882959;PERIOD=2;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
473 chr21 14883222 GANGSTR_437166 AGGAAAGGAAAGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14883222;END=14883236;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
474 chr21 14896066 GANGSTR_437167 AAAATAAAATATAAT AAAATAAAATATAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14896066;END=14896075;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:63:0:0:0:34.49|28.51:0|0:89.1:-0.3:54:-0.11:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
475 chr21 14905061 GANGSTR_437168 CATACATACATACATACATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14905061;END=14905080;PERIOD=4;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:0:1:40.00|40.00:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
476 chr21 14914925 GANGSTR_437169 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14914925;END=14914934;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
477 chr21 14917622 GANGSTR_437170 ATTCCTATTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14917622;END=14917633;PERIOD=6;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:38.08|32.92:0|0:.:0:.:0:0|50:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
478 chr21 14923717 GANGSTR_437171 TTGTATTGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14923717;END=14923726;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
479 chr21 14925569 GANGSTR_437173 TTGTTGTTGTTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14925569;END=14925592;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
480 chr21 14930456 GANGSTR_437175 TTTTCATTTTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14930456;END=14930467;PERIOD=6;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:1:24.50|24.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
481 chr21 14930605 GANGSTR_437176 ATATATATATAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14930605;END=14930616;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:1:0:29.50|29.50:0|0:.:0:.:0:0|42;2|1:0|35;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
482 chr21 14938664 GANGSTR_437177 TCTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14938664;END=14938671;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
483 chr21 14943039 GANGSTR_437178 TTTCTGTTTCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14943039;END=14943050;PERIOD=6;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
484 chr21 14945089 GANGSTR_437179 CAAAACAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14945089;END=14945108;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:24.94|29.06:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
485 chr21 14947840 GANGSTR_437180 ACAACAACAACA ACAACAGCAACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14947840;END=14947851;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:62:0:0:0:31.00|31.00:0|0:16.85:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
486 chr21 14948360 GANGSTR_437181 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14948360;END=14948371;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
487 chr21 14955978 GANGSTR_437182 GGAGGCGGAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14955978;END=14955989;PERIOD=6;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|40:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
488 chr21 14961073 GANGSTR_437183 TTGTTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14961073;END=14961082;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
489 chr21 14961672 GANGSTR_437184 TTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14961672;END=14961681;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:32.00|31.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
490 chr21 14965617 GANGSTR_437185 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14965617;END=14965631;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
491 chr21 14967518 GANGSTR_437186 GAAGAAGAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=14967518;END=14967529;PERIOD=3;NSKIP=0;NFILT=0;DP=89;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:89:0:0:0:44.50|44.50:0|0:.:0:.:0:0|69:0|66:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
492 chr21 14971169 GANGSTR_437188 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14971169;END=14971180;PERIOD=4;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|59:0|58:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
493 chr21 14975397 GANGSTR_437189 ACACACCACACACACACACACACACACACACACA AACACACACACACACACACACACACACG,ACACACCACACACACACACACACACACACACACACACACA . . INFRAME_PGEOM=0.51;INFRAME_UP=0.06;INFRAME_DOWN=0.22;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14975403;END=14975430;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6,6;DP=69;DSNP=0;DSTUTTER=6;DFLANKINDEL=9;AN=2;REFAC=0;AC=1,1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-6|6:1:0.5:69:0:6:9:7.58|61.42:0|0:17.94:-11.56:66:-1.59:-23|2;-7|5;-6|1;-1|6;1|1;4|2;6|22:-6|4;0|1;2|1;4|2;6|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
494 chr21 14984042 GANGSTR_437190 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14984042;END=14984053;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|51:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
495 chr21 14985593 GANGSTR_437191 TTAGTTTAGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=14985593;END=14985602;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
496 chr21 14988460 GANGSTR_437192 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.94;INFRAME_UP=0.05;INFRAME_DOWN=0.15;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=14988460;END=14988491;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6;DP=63;DSNP=0;DSTUTTER=3;DFLANKINDEL=3;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:6|6:1:1:63:0:3:3:31.50|31.50:0|0:8.06:0:.:0:-18|1;-13|1;1|5;3|1;4|2;5|1;6|17:4|2;6|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
497 chr21 14989253 GANGSTR_437193 AACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14989253;END=14989267;PERIOD=3;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
498 chr21 14989431 GANGSTR_437194 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14989431;END=14989442;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
499 chr21 14992053 GANGSTR_437195 ATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=14992053;END=14992061;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
500 chr21 15000603 GANGSTR_437197 AATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15000603;END=15000612;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
501 chr21 15005922 GANGSTR_437198 CTTTTTCTTTTTCTTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15005922;END=15005939;PERIOD=6;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|44:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
502 chr21 15006496 GANGSTR_437199 TCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTC . . INFRAME_PGEOM=0.76;INFRAME_UP=0.05;INFRAME_DOWN=0.15;OUTFRAME_PGEOM=0.6;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.1;START=15006496;END=15006511;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=29;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:29:0:2:1:14.50|14.50:0|0:3.79:0:.:0:-18|1;-1|1;0|1;2|1;4|13:0|1;2|1;4|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
503 chr21 15007783 GANGSTR_437200 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15007783;END=15007797;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
504 chr21 15009958 GANGSTR_437202 TTTATTTATTTATTTATTTA TTTATTTATTTATTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15009958;END=15009977;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:68:0:0:0:34.00|34.00:0|0:12.12:0:.:0:-4|37:-4|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
505 chr21 15026753 GANGSTR_437203 TATATATATATATATATCG TGTATATATATATATATCA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15026753;END=15026768;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=44;DSNP=0;DSTUTTER=6;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:44:0:6:2:14.89|29.11:0|0:30.75:-1.41:40:-3.97:-23|2;-19|1;0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
506 chr21 15030000 GANGSTR_437204 GGTAGGGTAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15030000;END=15030009;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:1:0:26.50|26.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
507 chr21 15033400 GANGSTR_437205 CCTCTCCCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15033400;END=15033411;PERIOD=6;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=1;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:1:3:28.50|28.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
508 chr21 15042430 GANGSTR_437206 ACTTTTATTTATTTATTTA AGTTTGCTTTATTTATTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15042433;END=15042448;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=87;DSNP=0;DSTUTTER=0;DFLANKINDEL=9;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:87:0:0:9:72.44|14.56:0|0:49.19:-10.45:79:-0.28:0|60:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
509 chr21 15045034 GANGSTR_437207 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15045034;END=15045045;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|45:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
510 chr21 15055378 GANGSTR_437208 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15055378;END=15055389;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
511 chr21 15056520 GANGSTR_437209 ACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15056520;END=15056533;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
512 chr21 15060250 GANGSTR_437210 ACAAAACAAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15060250;END=15060264;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
513 chr21 15061061 GANGSTR_437211 TTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15061061;END=15061080;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
514 chr21 15061167 GANGSTR_437212 AACAACAACAAC AACAACAACAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15061167;END=15061178;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:63:0:0:0:33.50|29.50:0|0:45.64:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
515 chr21 15063746 GANGSTR_437213 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15063746;END=15063757;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
516 chr21 15074053 GANGSTR_437214 AATCAATCAATCAATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15074053;END=15074068;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
517 chr21 15083426 GANGSTR_437215 TTTCTTTTCTTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=15083426;END=15083440;PERIOD=5;NSKIP=0;NFILT=0;DP=31;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:31:0:0:0:15.50|15.50:0|0:.:0:.:0:0|17:0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
518 chr21 15085446 GANGSTR_437218 TTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15085446;END=15085455;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|58:0|58:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
519 chr21 15085550 GANGSTR_437219 ATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15085550;END=15085557;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
520 chr21 15090695 GANGSTR_437220 TAAATAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=15090695;END=15090710;PERIOD=4;NSKIP=0;NFILT=0;DP=35;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:0:0:17.50|17.50:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
521 chr21 15093141 GANGSTR_437221 AAAATAAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15093141;END=15093160;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
522 chr21 15094173 GANGSTR_437222 TTTGTTTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15094173;END=15094192;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
523 chr21 15094339 GANGSTR_437223 TTATTTTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15094339;END=15094353;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
524 chr21 15095898 GANGSTR_437224 GGCGGCGGCGGCGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15095898;END=15095912;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
525 chr21 15096915 GANGSTR_437225 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15096915;END=15096926;PERIOD=4;NSKIP=0;NFILT=0;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:36:0:0:0:18.00|18.00:0|0:.:0:.:0:0|27:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
526 chr21 15106816 GANGSTR_437226 TGATCTGATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15106816;END=15106825;PERIOD=5;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
527 chr21 15109146 GANGSTR_437227 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15109146;END=15109157;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|51:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
528 chr21 15112018 GANGSTR_437228 GTAGGTAGGTAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15112018;END=15112029;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
529 chr21 15114257 GANGSTR_437229 TCCCTCCCTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15114257;END=15114268;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
530 chr21 15115672 GANGSTR_437230 CAAAACAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15115672;END=15115691;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
531 chr21 15121010 GANGSTR_437231 AGCTCAGCTCAGCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15121010;END=15121024;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:29.50|33.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
532 chr21 15132689 GANGSTR_437232 AGTTAGTTAGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15132689;END=15132700;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
533 chr21 15134219 GANGSTR_437233 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15134219;END=15134230;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
534 chr21 15140305 GANGSTR_437234 TTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15140305;END=15140316;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
535 chr21 15148524 GANGSTR_437235 GAGGAGGAGGAGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15148524;END=15148538;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|34:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
536 chr21 15149150 GANGSTR_437236 AAGAACAAGAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15149150;END=15149161;PERIOD=6;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|32:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
537 chr21 15149298 GANGSTR_437237 AAGAAAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15149298;END=15149309;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
538 chr21 15151190 GANGSTR_437238 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15151190;END=15151205;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
539 chr21 15155205 GANGSTR_437239 TTATTTATTTATTTATTTATTTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=15155205;END=15155240;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:1:0:30.50|30.50:0|0:.:0:.:0:-16|1;0|15:0|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
540 chr21 15162059 GANGSTR_437241 AGTGAGTGAGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15162059;END=15162070;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
541 chr21 15162979 GANGSTR_437242 CATCATCATCATCATCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15162979;END=15162996;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
542 chr21 15174765 GANGSTR_437243 AATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15174765;END=15174779;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|40:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
543 chr21 15181511 GANGSTR_437244 ATTATTATTATTATTATT ATTATTATTATTATTATTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.92;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.04;START=15181511;END=15181528;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=1;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|1:1:0.5:59:0:0:2:26.95|32.05:0|0:30.24:-0.39:36:-0.3:0|27;1|12;2|1:0|21;1|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
544 chr21 15188710 GANGSTR_437245 AAATAAATAAATAC AAATAAATAAATAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15188710;END=15188721;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:54:0:0:1:24.57|29.43:0|0:76.75:-0.25:47:-0.27:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
545 chr21 15198352 GANGSTR_437247 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15198352;END=15198366;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
546 chr21 15200654 GANGSTR_437248 GTTTTTGTTTTTGTTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.28;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=15200654;END=15200671;PERIOD=6;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:2:31.54|33.46:0|0:.:0:.:0:-10|1;0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
547 chr21 15203880 GANGSTR_437249 TGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15203880;END=15203894;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
548 chr21 15207588 GANGSTR_437250 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15207588;END=15207599;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|53:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
549 chr21 15212736 GANGSTR_437251 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15212736;END=15212747;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
550 chr21 15212925 GANGSTR_437252 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15212925;END=15212939;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
551 chr21 15215557 GANGSTR_437253 ACTGGGAGGGAGGGA ATGGGAGGGAGGGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.99;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.03;START=15215560;END=15215571;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=8;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:60:0:0:8:45.00|15.00:0|0:123.21:-3.87:60:0:-1|9;0|35:-1|9;0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
552 chr21 15217794 GANGSTR_437254 CATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15217794;END=15217805;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
553 chr21 15218552 GANGSTR_437255 ACATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15218552;END=15218559;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=6;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:6:30.50|30.50:0|0:.:0:.:0:0|47:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
554 chr21 15225924 GANGSTR_437256 CTGGAGCTGGAGCTGGAGCTGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15225924;END=15225947;PERIOD=6;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.50|32.50:0|0:.:0:.:0:-20|1;0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
555 chr21 15238860 GANGSTR_437257 GCTGGAGCTGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15238860;END=15238871;PERIOD=6;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|25:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
556 chr21 15245271 GANGSTR_437258 CTGGAGCTGGAGCTGGAGCTGGAG CTGGAGCTGTAGCTGTAGCTGTAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15245271;END=15245294;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:53:0:0:0:26.00|27.00:0|0:240.12:0:49:-0.25:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
557 chr21 15245965 GANGSTR_437259 TCTTTCTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15245965;END=15245976;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
558 chr21 15248398 GANGSTR_437260 GCTGGAGCTGGAGCTGGAGCTGGAGCTGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15248398;END=15248427;PERIOD=6;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|30:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
559 chr21 15253471 GANGSTR_437261 CCACCACCACCAACCC CCATCACCACCAATCT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15253471;END=15253482;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:74:0:0:3:51.23|22.77:0|0:173.41:-2.82:74:-1.64:0|54:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
560 chr21 15258423 GANGSTR_437262 GCTGGAGCTGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15258423;END=15258434;PERIOD=6;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
561 chr21 15264826 GANGSTR_437263 GCTGGAGCTGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15264826;END=15264837;PERIOD=6;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|40:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
562 chr21 15267953 GANGSTR_437264 GCTGGAGCTGGAGCTGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15267953;END=15267970;PERIOD=6;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|35:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
563 chr21 15281469 GANGSTR_437266 CCCTCCCTCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15281469;END=15281480;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
564 chr21 15284101 GANGSTR_437267 TAATAATAA TAATATTAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15284101;END=15284109;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=8;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:61:0:0:8:50.45|10.55:0|0:11.08:-7.99:52:-0.17:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
565 chr21 15294668 GANGSTR_437269 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15294668;END=15294679;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
566 chr21 15301231 GANGSTR_437270 CTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15301231;END=15301238;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:1:34.00|34.00:0|0:.:0:.:0:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
567 chr21 15302168 GANGSTR_437271 TATTTATTTATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15302168;END=15302191;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
568 chr21 15313798 GANGSTR_437272 TCTCTCTCTCTCTC TCTCTCTCTCTCTCTT,TCTCTCTCTCTCTCTTTT . . INFRAME_PGEOM=0.92;INFRAME_UP=0.12;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.8;OUTFRAME_UP=0.08;OUTFRAME_DOWN=0.03;START=15313798;END=15313811;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2,4;DP=63;DSNP=0;DSTUTTER=4;DFLANKINDEL=8;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:2|4:1:0.5:63:0:4:8:34.27|28.73:0|0:14.46:-0.27:41:-0.27:0|11;1|2;2|15;3|2;4|11;5|3:2|23;4|13;6|3:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
569 chr21 15318775 GANGSTR_437273 TTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15318775;END=15318784;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
570 chr21 15322453 GANGSTR_437275 TTTCTTTCTTTC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15322453;END=15322464;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:1:0:33.00|33.00:0|0:.:0:.:0:-4|1;0|47:-4|1;0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
571 chr21 15336213 GANGSTR_437276 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15336213;END=15336224;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|45:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
572 chr21 15336366 GANGSTR_437277 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15336366;END=15336377;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
573 chr21 15341979 GANGSTR_437279 GAAAAGAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=15341979;END=15341988;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:-1|1;0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
574 chr21 15342852 GANGSTR_437280 ATGATGATGATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15342852;END=15342863;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:4:34.00|34.00:0|0:.:0:.:0:0|50;12|1:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
575 chr21 15348681 GANGSTR_437282 TACTACTACTTAAC TAATACTACTTAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=15348681;END=15348689;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=124;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:124:0:0:0:100.39|23.61:0|0:100.37:-11.5:124:-0.77:0|99:-1|17;0|77:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
576 chr21 15350963 GANGSTR_437283 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15350963;END=15350974;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
577 chr21 15352662 GANGSTR_437284 CAGGAGCAGGAGCAGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15352662;END=15352679;PERIOD=6;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:31.44|18.56:0|0:.:0:.:0:-24|1;0|30:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
578 chr21 15356059 GANGSTR_437285 TGGTGGTGGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15356059;END=15356070;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:1:23.00|23.00:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
579 chr21 15356133 GANGSTR_437286 ACTGTGGGGTGGG AGTGTGGGGTGGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15356136;END=15356145;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:41:0:0:0:20.50|20.50:0|0:11.14:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
580 chr21 15357021 GANGSTR_437287 AGGAGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15357021;END=15357032;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=7;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:7:26.50|26.50:0|0:.:0:.:0:0|34:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
581 chr21 15358053 GANGSTR_437289 AACCTGCCCTGCCG ACCATGCCCTGACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15358055;END=15358064;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:53:0:0:1:44.50|8.50:0|0:59.06:-6.39:52:-0.88:-3|1;0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
582 chr21 15361101 GANGSTR_437294 ACATACATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15361101;END=15361112;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:1:33.00|33.00:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
583 chr21 15368396 GANGSTR_437295 TCTGTCTGTCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15368396;END=15368407;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
584 chr21 15376291 GANGSTR_437297 AACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15376291;END=15376305;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
585 chr21 15389320 GANGSTR_437298 AAACCAAACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15389320;END=15389329;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
586 chr21 15390653 GANGSTR_437299 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15390653;END=15390664;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
587 chr21 15393153 GANGSTR_437300 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15393153;END=15393167;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
588 chr21 15393803 GANGSTR_437301 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15393803;END=15393814;PERIOD=2;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|30:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
589 chr21 15393875 GANGSTR_437302 ATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15393875;END=15393888;PERIOD=2;NSKIP=0;NFILT=0;DP=33;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:33:0:0:0:16.50|16.50:0|0:.:0:.:0:0|25:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
590 chr21 15398984 GANGSTR_437303 TTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15398984;END=15398992;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
591 chr21 15399457 GANGSTR_437304 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15399457;END=15399468;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
592 chr21 15409422 GANGSTR_437305 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15409422;END=15409433;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
593 chr21 15411076 GANGSTR_437306 TGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15411076;END=15411089;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
594 chr21 15412172 GANGSTR_437307 ACACACACACACACAC . . . INFRAME_PGEOM=0.99;INFRAME_UP=0.02;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15412172;END=15412187;PERIOD=2;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:3:0:34.00|34.00:0|0:.:0:.:0:-2|3;0|49:-2|3;0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
595 chr21 15415936 GANGSTR_437308 CAGACCAGAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15415936;END=15415945;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
596 chr21 15420643 GANGSTR_437309 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15420643;END=15420654;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
597 chr21 15423131 GANGSTR_437310 AGAGAGAGAGAGAG . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15423131;END=15423144;PERIOD=2;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:2:0:34.50|34.50:0|0:.:0:.:0:-2|2;0|49:-2|2;0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
598 chr21 15424630 GANGSTR_437311 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15424630;END=15424641;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
599 chr21 15428200 GANGSTR_437312 GGGCAGGGGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15428200;END=15428211;PERIOD=6;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
600 chr21 15428301 GANGSTR_437313 AGAGCAGAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15428301;END=15428310;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
601 chr21 15428773 GANGSTR_437314 GACAGGGACAGGGACAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15428773;END=15428790;PERIOD=6;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
602 chr21 15429186 GANGSTR_437315 CAGGGCCAGGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15429186;END=15429197;PERIOD=6;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|40:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
603 chr21 15429411 GANGSTR_437316 GGGCCAGGGCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15429411;END=15429422;PERIOD=6;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:1:22.00|22.00:0|0:.:0:.:0:-15|1;0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
604 chr21 15430139 GANGSTR_437317 AGGGCCAGGGCCAGGGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15430139;END=15430156;PERIOD=6;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:2:23.00|23.00:0|0:.:0:.:0:-6|1;0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
605 chr21 15431601 GANGSTR_437319 CAGGGCAGGGCAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15431601;END=15431615;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:3:24.00|24.00:0|0:.:0:.:0:0|34:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
606 chr21 15432818 GANGSTR_437320 TACCACCACCACC TCCCCCCCCCCCC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=15432819;END=15432830;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=34;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:34:0:0:0:27.75|6.25:0|0:22.68:-4.47:31:-2.18:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
607 chr21 15442001 GANGSTR_437322 ATAATAATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15442001;END=15442018;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
608 chr21 15442451 GANGSTR_437323 GTGGTGGTGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=15442451;END=15442462;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:2:27.00|27.00:0|0:.:0:.:0:-1|1;0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
609 chr21 15450647 GANGSTR_437324 AGGGAGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15450647;END=15450658;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
610 chr21 15452282 GANGSTR_437325 ATGAATGAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15452282;END=15452293;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:3:28.00|28.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
611 chr21 15453628 GANGSTR_437326 AATTTAATTTAATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15453628;END=15453642;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
612 chr21 15454137 GANGSTR_437327 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15454137;END=15454151;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
613 chr21 15455346 GANGSTR_437328 AAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15455346;END=15455353;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|57:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
614 chr21 15455442 GANGSTR_437329 TGTCTGTCTGTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15455442;END=15455453;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|30:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
615 chr21 15461081 GANGSTR_437331 AAAAGAAAAGAAAAG AAAAAAAAAGAAAAG,AAAAAAAGAAAAGGAAAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.97;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=15461081;END=15461095;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0,3;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=2;REFAC=0;AC=1,1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:0|3:1:0.5:67:0:0:4:33.99|33.01:0|0:100.77:-0:59:-0.71:-15|1;-2|1;-1|1;0|19;1|1;3|19;6|1:0|21;3|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
616 chr21 15461384 GANGSTR_437332 GTTTTTTGTTTTTTGTTTTTTTA GTTTTTTGTTTTTTGTTTTTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15461384;END=15461404;PERIOD=7;NSKIP=0;NFILT=0;BPDIFFS=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=7;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:55:0:0:0:21.50|33.50:0|0:47.64:-1.09:40:-0.48:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
617 chr21 15463570 GANGSTR_437333 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15463570;END=15463581;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
618 chr21 15467232 GANGSTR_437334 AAAATAAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15467232;END=15467251;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
619 chr21 15467849 GANGSTR_437335 GAGGAGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15467849;END=15467857;PERIOD=3;NSKIP=0;NFILT=0;DP=29;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:29:0:0:0:14.50|14.50:0|0:.:0:.:0:0|25:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
620 chr21 15468364 GANGSTR_437336 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15468364;END=15468378;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:32.03|33.97:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
621 chr21 15470102 GANGSTR_437337 TCAGTAATAATTATAATT TAAGTAATAATTATAATT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15470108;END=15470119;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:65:0:0:0:32.00|33.00:0|0:89.17:-0:65:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
622 chr21 15477738 GANGSTR_437338 TTATTTATTTATTTATTT TTATTTATTTATTTATTC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15477738;END=15477753;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=86;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:86:0:0:0:46.01|39.99:0|0:110.3:-0.26:68:-0.2:0|53:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
623 chr21 15479065 GANGSTR_437340 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.97;INFRAME_UP=0.04;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15479065;END=15479094;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:59:0:0:2:26.26|32.74:0|0:7.5:-0.64:34:0:-2|23;0|13:-2|18;0|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
624 chr21 15482667 GANGSTR_437341 ATTTATTTG ATTTA . . INFRAME_PGEOM=0.98;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15482667;END=15482674;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:53:0:0:0:29.87|23.13:0|0:26.42:-0.31:52:-0.23:-4|21;0|21:-4|21;0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
625 chr21 15483173 GANGSTR_437342 TCTATCTATCTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=15483173;END=15483184;PERIOD=4;NSKIP=0;NFILT=0;DP=31;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:31:0:0:0:15.01|15.99:0|0:.:0:.:0:0|22:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
626 chr21 15483262 GANGSTR_437343 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=15483262;END=15483273;PERIOD=2;NSKIP=0;NFILT=0;DP=29;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:29:0:0:0:14.00|15.00:0|0:.:0:.:0:0|14:0|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
627 chr21 15502661 GANGSTR_437344 AGAGAGAGAGAGAGAG . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15502661;END=15502676;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:2:0:31.50|31.50:0|0:.:0:.:0:-2|2;0|44:-2|2;0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
628 chr21 15502747 GANGSTR_437345 ACCACCACCACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15502747;END=15502758;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
629 chr21 15504354 GANGSTR_437346 AAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15504354;END=15504361;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
630 chr21 15504744 GANGSTR_437347 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15504744;END=15504755;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
631 chr21 15505334 GANGSTR_437348 ACAACAACAACAACAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15505334;END=15505351;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:2:28.00|28.00:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
632 chr21 15510579 GANGSTR_437349 CAGGATAGATAGATAGATA CTGGATAGATAGATAGATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15510582;END=15510597;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:68:0:0:0:32.00|36.00:0|0:99.72:-0.16:58:-0.97:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
633 chr21 15511146 GANGSTR_437350 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15511146;END=15511157;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
634 chr21 15515489 GANGSTR_437351 AATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15515489;END=15515497;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
635 chr21 15528625 GANGSTR_437353 AAGAGGAAGAGGAAGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15528625;END=15528642;PERIOD=6;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
636 chr21 15534387 GANGSTR_437355 GATAGATAGATAGATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=15534387;END=15534402;PERIOD=4;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|21:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
637 chr21 15535414 GANGSTR_437356 TATATATATATATATA TATATATATATATA . . INFRAME_PGEOM=1;INFRAME_UP=0.08;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15535414;END=15535429;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=50;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:50:0:1:0:23.57|26.43:0|0:10.34:-0.06:40:-0.29:-2|21;0|18;2|1:-2|20;0|16;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
638 chr21 15539569 GANGSTR_437357 GCCTGCCTGCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15539569;END=15539580;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:2:37.95|25.05:0|0:.:0:.:0:-1|1;0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
639 chr21 15540450 GANGSTR_437358 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15540450;END=15540461;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
640 chr21 15556793 GANGSTR_437360 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15556793;END=15556804;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:24.94|30.06:0|0:.:0:.:0:0|34:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
641 chr21 15566215 GANGSTR_437361 ATTAATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15566215;END=15566226;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
642 chr21 15566448 GANGSTR_437362 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15566448;END=15566459;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|45:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
643 chr21 15567164 GANGSTR_437363 AAACAAAACAAAACATTA AAACAAAACAAAACATTC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15567164;END=15567178;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:54:0:0:0:26.56|27.44:0|0:84.95:0:47:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
644 chr21 15569146 GANGSTR_437365 CAACAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15569146;END=15569160;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
645 chr21 15575313 GANGSTR_437366 AAACAAACAAAC AAACAAAC . . INFRAME_PGEOM=0.98;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15575313;END=15575324;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:43:0:0:0:23.22|19.78:0|0:13.11:-0.13:37:-0.3:-4|15;0|16:-4|15;0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
646 chr21 15576176 GANGSTR_437367 AGAGAAAGAAAGAA AAAGAAAGAAAGAAAGAAAGAA . . INFRAME_PGEOM=0.73;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15576178;END=15576189;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=8;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:8|8:1:1:64:0:0:0:32.00|32.00:0|0:16.85:0:.:0:-21|2;0|6;8|41:8|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
647 chr21 15585613 GANGSTR_437368 TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=15585613;END=15585656;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=8;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:8|8:1:1:68:0:0:0:34.00|34.00:0|0:7.48:0:.:0:-10|4;-5|1;-1|1;0|3;2|1;4|1;8|14:8|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
648 chr21 15615546 GANGSTR_437371 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.96;INFRAME_UP=0.06;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=15615546;END=15615583;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=56;DSNP=0;DSTUTTER=4;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:56:0:4:1:29.07|26.93:0|0:13.91:-0:23:0:-33|1;-2|1;0|7;2|3;4|5:-2|1;0|7;2|2;4|4:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
649 chr21 15616065 GANGSTR_437372 GAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15616065;END=15616072;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|37:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
650 chr21 15620111 GANGSTR_437373 AGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15620111;END=15620122;PERIOD=2;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
651 chr21 15624668 GANGSTR_437374 CAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15624668;END=15624683;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
652 chr21 15631144 GANGSTR_437376 CAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15631144;END=15631158;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
653 chr21 15631286 GANGSTR_437377 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15631286;END=15631297;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:1:35.50|35.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
654 chr21 15643401 GANGSTR_437379 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15643401;END=15643412;PERIOD=2;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
655 chr21 15648074 GANGSTR_437380 CATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15648074;END=15648081;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
656 chr21 15652497 GANGSTR_437381 ACACACACACAC AAACACACACAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15652497;END=15652508;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:59:0:0:0:29.46|29.54:0|0:91.09:0:54:-0.78:0|47:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
657 chr21 15656210 GANGSTR_437382 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15656210;END=15656224;PERIOD=5;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
658 chr21 15663778 GANGSTR_437383 GTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.69;INFRAME_UP=0.05;INFRAME_DOWN=0.22;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=15663778;END=15663801;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6,8;DP=51;DSNP=0;DSTUTTER=5;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:6|8:1:0.5:51:0:5:2:24.61|26.39:0|0:2.91:-0:33:-0.52:-2|1;0|4;4|4;6|11;8|11:4|3;6|10;8|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
659 chr21 15664856 GANGSTR_437384 TGAATGAATGAATGAATGAATGAA TGAATGAATGAATGAATGAATGAATGAA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.08;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15664856;END=15664879;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:62:0:0:1:28.03|33.97:0|0:4.77:-0.53:33:-1.1:-6|1;-4|1;0|12;4|15:0|12;4|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
660 chr21 15670685 GANGSTR_437385 AATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15670685;END=15670692;PERIOD=4;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
661 chr21 15671077 GANGSTR_437386 ATATATATATATATATATTTT ATATATATATATATATATA,ATATATATATATATATATATATATATA . . INFRAME_PGEOM=1;INFRAME_UP=0.08;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=15671077;END=15671094;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,6;DP=31;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|6:1:0.5:31:0:0:0:21.98|9.02:0|0:29.47:-1.97:23:0:-2|17;0|1;6|5:-2|18;6|5:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
662 chr21 15675891 GANGSTR_437387 AAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAAT AAAAATAAAATAAAATAAAATAAAATAAAAT,AAAAAAATAAATAAAATAAAATAAAATAAAATAAAATAAAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.56;OUTFRAME_UP=0.16;OUTFRAME_DOWN=0.04;START=15675891;END=15675930;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-9,2;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 2|1:2|-9:1:0.5:51:0:0:2:16.28|34.72:0|0:90.28:-2.18:45:-0.47:-9|15;-1|4;0|1;2|2;4|1:-9|18;2|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
663 chr21 15677059 GANGSTR_437388 GAGAAGAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15677059;END=15677068;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
664 chr21 15678247 GANGSTR_437389 TTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15678247;END=15678256;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
665 chr21 15680064 GANGSTR_437390 TGGGGTGGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15680064;END=15680073;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:1:23.50|23.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
666 chr21 15683430 GANGSTR_437391 AGTATTCAGTATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15683430;END=15683443;PERIOD=7;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
667 chr21 15694790 GANGSTR_437392 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15694790;END=15694801;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
668 chr21 15713123 GANGSTR_437393 TTCATATTCATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15713123;END=15713134;PERIOD=6;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
669 chr21 15715856 GANGSTR_437394 AATAAAATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15715856;END=15715870;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
670 chr21 15716348 GANGSTR_437395 TTTGTTTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15716348;END=15716367;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
671 chr21 15724103 GANGSTR_437396 TTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15724103;END=15724117;PERIOD=5;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:19.04|21.96:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
672 chr21 15727576 GANGSTR_437397 AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG,AAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAG . . INFRAME_PGEOM=1;INFRAME_UP=0.06;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=15727576;END=15727643;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4,-4;DP=81;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|-4:0.99:0.5:81:0:0:0:36.80|44.20:0|0:2.21:-0.3:79:-0.18:-36|1;-4|14:-4|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
673 chr21 15729748 GANGSTR_437398 GAATGAATGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15729748;END=15729759;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:21.50|26.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
674 chr21 15734328 GANGSTR_437399 ATTATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15734328;END=15734345;PERIOD=3;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:1:0:35.50|35.50:0|0:.:0:.:0:-3|1;0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
675 chr21 15734553 GANGSTR_437400 CTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15734553;END=15734564;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|53:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
676 chr21 15735247 GANGSTR_437401 GTTTGTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15735247;END=15735262;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
677 chr21 15743792 GANGSTR_437402 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15743792;END=15743803;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|50:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
678 chr21 15750759 GANGSTR_437403 AAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15750759;END=15750766;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
679 chr21 15751847 GANGSTR_437404 AACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15751847;END=15751855;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
680 chr21 15758184 GANGSTR_437405 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15758184;END=15758198;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
681 chr21 15761791 GANGSTR_437406 ATTAATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15761791;END=15761802;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|55:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
682 chr21 15761872 GANGSTR_437407 TTTAATTTAATTTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15761872;END=15761886;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
683 chr21 15762318 GANGSTR_437408 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15762318;END=15762353;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-12,-4;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-12|-4:1:0.5:59:0:0:0:29.03|29.97:0|0:46.63:-0:37:-0.13:-12|16;-4|16:-12|15;-4|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
684 chr21 15763445 GANGSTR_437409 TTTGTTTGTTTGTTTG TTTGTTTGTTTG . . INFRAME_PGEOM=0.96;INFRAME_UP=0.05;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15763445;END=15763460;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:66:0:0:0:35.95|30.05:0|0:16.34:-0.4:51:-0.77:-4|18;0|24:-4|18;0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
685 chr21 15764830 GANGSTR_437410 AGAGAGAGAGAG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15764830;END=15764841;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:1:0:29.50|29.50:0|0:.:0:.:0:-2|1;0|40:-2|1;0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
686 chr21 15768278 GANGSTR_437411 CTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15768278;END=15768289;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
687 chr21 15770076 GANGSTR_437412 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15770076;END=15770087;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
688 chr21 15778131 GANGSTR_437414 TATTTATT TATT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.04;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15778131;END=15778138;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:73:0:0:0:40.62|32.38:0|0:32.04:-0.42:64:-0.91:-4|27;0|33:-4|26;0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
689 chr21 15783354 GANGSTR_437416 TCTATTCTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15783354;END=15783363;PERIOD=5;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
690 chr21 15785854 GANGSTR_437417 TTTTATTTTATTTTA TTTTATTTTATTTATTTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15785854;END=15785868;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=4;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:51:0:0:0:23.00|28.00:0|0:165.38:-0.27:43:0:-58|1;0|16;4|19:0|16;4|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
691 chr21 15786588 GANGSTR_437418 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=15786588;END=15786599;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:1:1:29.50|29.50:0|0:.:0:.:0:-1|1;0|36:-8|1;0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
692 chr21 15791136 GANGSTR_437419 AGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15791136;END=15791147;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
693 chr21 15796396 GANGSTR_437420 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15796396;END=15796407;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
694 chr21 15797637 GANGSTR_437421 TTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTA TTTTATTTTATTTTATTTTATTTTATTTTA,TTTTATTTTATTTTATTTTATTTTATTTTATTTTA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.1;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=15797637;END=15797681;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-15,-10;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-15|-10:1:0.5:59:0:0:0:29.60|29.40:0|0:4.02:-0.55:31:-0.56:-15|11;-10|7:-15|11;-10|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
695 chr21 15801887 GANGSTR_437422 AGAAGAAGAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15801887;END=15801898;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
696 chr21 15806086 GANGSTR_437423 ACAAACAAACAAACAA ACAAACAAACAAACAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15806086;END=15806101;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=1;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:1|1:1:1:65:0:0:0:32.50|32.50:0|0:16.26:0:.:0:1|40:1|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
697 chr21 15815159 GANGSTR_437424 GAAGGAAGGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15815159;END=15815170;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
698 chr21 15821984 GANGSTR_437425 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15821984;END=15821995;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
699 chr21 15829834 GANGSTR_437426 ATAATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15829834;END=15829848;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|37:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
700 chr21 15830173 GANGSTR_437427 AGCAAGCAAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15830173;END=15830184;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
701 chr21 15831200 GANGSTR_437428 TTATATTATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=15831200;END=15831209;PERIOD=5;NSKIP=0;NFILT=0;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:36:0:0:0:18.00|18.00:0|0:.:0:.:0:0|22:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
702 chr21 15832184 GANGSTR_437429 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15832184;END=15832195;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
703 chr21 15834332 GANGSTR_437430 AAACAAACAAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15834332;END=15834359;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:1:37.50|37.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
704 chr21 15837425 GANGSTR_437431 CCACCCTCCACCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15837425;END=15837438;PERIOD=7;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|39:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
705 chr21 15839749 GANGSTR_437432 AGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15839749;END=15839757;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
706 chr21 15844147 GANGSTR_437433 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15844147;END=15844158;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
707 chr21 15855056 GANGSTR_437434 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15855056;END=15855067;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
708 chr21 15856858 GANGSTR_437435 TGGTGGTGGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15856858;END=15856869;PERIOD=3;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:1:21.50|21.50:0|0:.:0:.:0:-6|1;0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
709 chr21 15858896 GANGSTR_437436 ATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=15858896;END=15858903;PERIOD=4;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:0:39.50|39.50:0|0:.:0:.:0:0|62:0|61:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
710 chr21 15862226 GANGSTR_437438 TTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15862226;END=15862237;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
711 chr21 15865434 GANGSTR_437439 GGCAGGCAGGCAGGCAGGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15865434;END=15865453;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
712 chr21 15865896 GANGSTR_437440 ACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.94;INFRAME_UP=0.04;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=15865896;END=15865933;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6,4;DP=71;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-6|4:1:0.5:71:0:1:2:33.42|37.58:0|0:36.14:-0.22:32:-0.14:-11|1;-6|12;0|1;1|2;2|1;4|11:-6|11;2|1;4|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
713 chr21 15874906 GANGSTR_437441 GCAGCAGCAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15874906;END=15874917;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|48:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
714 chr21 15876866 GANGSTR_437442 ACAAAGACAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15876866;END=15876877;PERIOD=6;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|31:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
715 chr21 15879770 GANGSTR_437443 CAAAAACAAAAACAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15879770;END=15879787;PERIOD=6;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|36:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
716 chr21 15887895 GANGSTR_437444 ATTAGATTAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15887895;END=15887904;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
717 chr21 15888716 GANGSTR_437445 TTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15888716;END=15888725;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:22.02|32.98:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
718 chr21 15893914 GANGSTR_437446 AACCAACCAACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=15893914;END=15893925;PERIOD=4;NSKIP=0;NFILT=0;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:36:0:0:0:18.00|18.00:0|0:.:0:.:0:0|22:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
719 chr21 15898180 GANGSTR_437447 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15898180;END=15898195;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:33.00|24.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
720 chr21 15902110 GANGSTR_437448 CATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15902110;END=15902121;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
721 chr21 15904007 GANGSTR_437449 TAAAATAAAATAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15904007;END=15904021;PERIOD=5;NSKIP=0;NFILT=0;DP=90;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:90:0:0:0:45.00|45.00:0|0:.:0:.:0:0|57:0|57:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
722 chr21 15905223 GANGSTR_437450 TTATTTATTTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=15905223;END=15905246;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|16:0|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
723 chr21 15906766 GANGSTR_437451 AACAACAACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15906766;END=15906786;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|47:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
724 chr21 15907772 GANGSTR_437452 GGAAGGAAGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15907772;END=15907783;PERIOD=4;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:0:39.50|39.50:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
725 chr21 15908547 GANGSTR_437453 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15908547;END=15908558;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:35.00|29.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
726 chr21 15909007 GANGSTR_437454 AAGAAGAAGAAGAAGCC AAGAAGAAGAAGAAGCT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15909007;END=15909021;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:50:0:0:0:28.87|21.13:0|0:56.95:-0.37:40:-0.27:0|32:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
727 chr21 15910439 GANGSTR_437455 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15910439;END=15910453;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
728 chr21 15913840 GANGSTR_437456 TTTTTGTTTGTTTGTTTG TGTTTGTTTGTTTGTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15913842;END=15913857;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=5;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:61:0:0:1:35.53|25.47:0|0:92.63:-0.61:60:-0.22:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
729 chr21 15913915 GANGSTR_437457 TTCTTCTTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15913915;END=15913926;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
730 chr21 15915197 GANGSTR_437458 GGTTAGGGTTAGGGTTAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15915197;END=15915214;PERIOD=6;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:-6|2;0|35:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
731 chr21 15917061 GANGSTR_437459 ATGATGATGATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15917061;END=15917072;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
732 chr21 15929285 GANGSTR_437460 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15929285;END=15929296;PERIOD=3;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.50|35.50:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
733 chr21 15931996 GANGSTR_437461 TTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15931996;END=15932005;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:1:0:24.50|24.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
734 chr21 15936318 GANGSTR_437462 CATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15936318;END=15936329;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
735 chr21 15938851 GANGSTR_437463 ATATATATATATAAAA ATATATATATATAAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15938851;END=15938862;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:60:0:0:2:31.51|28.49:0|0:92.97:-0.1:55:-0.23:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
736 chr21 15951911 GANGSTR_437464 AAATATTTATTTATTTATT AGATATTTATTTATTTATT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15951914;END=15951929;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:65:0:0:0:32.50|32.50:0|0:17.34:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
737 chr21 15955597 GANGSTR_437465 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15955597;END=15955608;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:1:34.00|36.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
738 chr21 15959918 GANGSTR_437466 TGCATGCATGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15959918;END=15959929;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|27:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
739 chr21 15960066 GANGSTR_437467 TTATTTATTTATTTATTTAT . . . INFRAME_PGEOM=0.98;INFRAME_UP=0.21;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.08;OUTFRAME_DOWN=0.04;START=15960066;END=15960085;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=12;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:12:0:24.50|24.50:0|0:.:0:.:0:-5|4;0|14;4|5:0|13;4|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
740 chr21 15962090 GANGSTR_437468 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15962090;END=15962104;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
741 chr21 15962765 GANGSTR_437469 TTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15962765;END=15962779;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:27.00|26.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
742 chr21 15964602 GANGSTR_437470 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15964602;END=15964613;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
743 chr21 15969439 GANGSTR_437471 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15969439;END=15969450;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
744 chr21 15980057 GANGSTR_437473 AACAAAACAAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15980057;END=15980071;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
745 chr21 15984564 GANGSTR_437474 AAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15984564;END=15984571;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
746 chr21 15993986 GANGSTR_437475 GCCTGCCTGCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=15993986;END=15993997;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
747 chr21 15994861 GANGSTR_437476 AATGAAATGAAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=15994861;END=15994875;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
748 chr21 16001620 GANGSTR_437477 CATCATCATCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16001620;END=16001631;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
749 chr21 16002834 GANGSTR_437478 ATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16002834;END=16002843;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
750 chr21 16003721 GANGSTR_437479 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16003721;END=16003736;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
751 chr21 16004267 GANGSTR_437480 GAAGGAAGGAAGGAAGGAAGGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16004267;END=16004290;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
752 chr21 16004830 GANGSTR_437481 TTGTATTTGTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16004830;END=16004841;PERIOD=6;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
753 chr21 16006374 GANGSTR_437482 TTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16006374;END=16006382;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
754 chr21 16008144 GANGSTR_437483 TTATTATTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16008144;END=16008164;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:1:36.50|29.50:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
755 chr21 16010253 GANGSTR_437484 TGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16010253;END=16010266;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
756 chr21 16013135 GANGSTR_437485 ATACATACATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16013135;END=16013146;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
757 chr21 16019138 GANGSTR_437486 TTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16019138;END=16019145;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
758 chr21 16022094 GANGSTR_437487 ACACACACACACACACACACACACACACACACACACACACACAC ACACACACACATACACACACACACACACACACACACACACAC,ACACACACACATACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=16022094;END=16022137;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,6;DP=59;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|6:1:0.5:59:0:2:1:30.46|28.54:0|0:55.82:-0.07:28:-0.35:-7|1;-4|1;-2|9;0|1;4|1;6|8:-4|1;-2|8;4|1;6|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
759 chr21 16024072 GANGSTR_437488 ATGATATGATATGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16024072;END=16024086;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
760 chr21 16026172 GANGSTR_437489 ACACACACACACACACAC ACACACACACAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16026172;END=16026189;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-6|-6:1:1:54:0:0:0:27.00|27.00:0|0:11.43:0:.:0:-6|37:-6|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
761 chr21 16029144 GANGSTR_437490 TCTTTCTT TCTTTCGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16029144;END=16029151;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:61:0:0:0:32.50|28.50:0|0:86.82:0:.:0:0|49:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
762 chr21 16033155 GANGSTR_437491 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16033155;END=16033169;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:2:32.00|32.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
763 chr21 16035376 GANGSTR_437492 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16035376;END=16035387;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
764 chr21 16036428 GANGSTR_437493 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16036428;END=16036442;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
765 chr21 16038687 GANGSTR_437494 TTCTTCTTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16038687;END=16038698;PERIOD=3;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|59:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
766 chr21 16044003 GANGSTR_437496 TCTATCTATCTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16044003;END=16044014;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
767 chr21 16053224 GANGSTR_437497 AAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16053224;END=16053231;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
768 chr21 16053961 GANGSTR_437498 AATAAAATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16053961;END=16053975;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:31.00|40.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
769 chr21 16055489 GANGSTR_437499 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16055489;END=16055500;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
770 chr21 16059460 GANGSTR_437500 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16059460;END=16059471;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
771 chr21 16062766 GANGSTR_437501 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16062766;END=16062781;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:3:30.50|30.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
772 chr21 16064051 GANGSTR_437502 ACACACACACACACACACAC ACACACACACACACACAAAA . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16064051;END=16064070;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=75;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:75:0:2:1:39.01|35.99:0|0:204.69:-0.09:65:0:-3|1;-2|2;0|47;3|1:-2|2;0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
773 chr21 16065129 GANGSTR_437503 TTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16065129;END=16065138;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
774 chr21 16066279 GANGSTR_437504 ACACACACACACACACACACACACACACACACACAGGCA ACACACACACACACACACACACACACACACAGGCC,ACACACACACACACACACACACACACACACACACACAGGCA . . INFRAME_PGEOM=0.99;INFRAME_UP=0.04;INFRAME_DOWN=0.15;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=16066279;END=16066312;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4,2;DP=57;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|2:1:0.5:57:0:2:1:29.49|27.51:0|0:17.19:0:48:-0:-4|17;0|3;2|10:-4|15;0|2;2|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
775 chr21 16074189 GANGSTR_437506 TGTGTGTGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16074189;END=16074214;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:2:0:27.00|27.00:0|0:.:0:.:0:0|31:-2|1;0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
776 chr21 16076127 GANGSTR_437507 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16076127;END=16076138;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:26.03|21.97:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
777 chr21 16078996 GANGSTR_437508 GAATGAATGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16078996;END=16079007;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
778 chr21 16082574 GANGSTR_437509 AATAATAATAATAAAGT AATAATAATAATAAAGC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16082574;END=16082585;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:55:0:0:0:29.00|26.00:0|0:69.72:-0.12:43:-0.12:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
779 chr21 16090026 GANGSTR_437510 AAGAAAGAAAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.01;START=16090026;END=16090041;PERIOD=4;NSKIP=0;NFILT=0;DP=89;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:89:0:0:5:40.58|48.42:0|0:.:0:.:0:0|63;1|1:0|61:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
780 chr21 16090570 GANGSTR_437511 AAACAAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16090570;END=16090593;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
781 chr21 16094358 GANGSTR_437512 TCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16094358;END=16094371;PERIOD=2;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:21.00|23.00:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
782 chr21 16098294 GANGSTR_437513 GAGGGAGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16098294;END=16098305;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
783 chr21 16100833 GANGSTR_437514 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16100833;END=16100844;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:1:37.00|37.00:0|0:.:0:.:0:-1|1;0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
784 chr21 16103526 GANGSTR_437515 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16103526;END=16103537;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
785 chr21 16107677 GANGSTR_437516 AATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16107677;END=16107686;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
786 chr21 16108615 GANGSTR_437517 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16108615;END=16108626;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
787 chr21 16110190 GANGSTR_437518 ATAATAAATAAATA AGAATAAATAAATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16110192;END=16110203;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:66:0:0:1:34.00|32.00:0|0:112.75:-0.05:62:-0.35:0|47:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
788 chr21 16112020 GANGSTR_437519 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16112020;END=16112031;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|45:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
789 chr21 16114442 GANGSTR_437520 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16114442;END=16114453;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:1:34.00|34.00:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
790 chr21 16116734 GANGSTR_437523 AAAACAAAACAAAACAAAACAAAACAAAAC AAAACAAAACAAAACAAAACAAAAC . . INFRAME_PGEOM=0.97;INFRAME_UP=0.04;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16116734;END=16116763;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-5;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-5:1:0.5:69:0:0:0:27.48|41.52:0|0:24.03:-1.06:58:0:-5|23;0|13:-5|23;0|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
791 chr21 16128770 GANGSTR_437524 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16128770;END=16128781;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
792 chr21 16129523 GANGSTR_437525 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16129523;END=16129534;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
793 chr21 16132900 GANGSTR_437526 AAATAAATAAAT AAATAAATAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.97;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.03;START=16132900;END=16132911;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:71:0:0:0:45.40|25.60:0|0:96.5:-1.87:60:0:-1|15;0|26:-1|14;0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
794 chr21 16134343 GANGSTR_437527 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16134343;END=16134354;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|49:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
795 chr21 16136148 GANGSTR_437528 TGGTGGTGGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16136148;END=16136159;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
796 chr21 16137897 GANGSTR_437529 ACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.97;INFRAME_UP=0.03;INFRAME_DOWN=0.17;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16137897;END=16137930;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4,4;DP=68;DSNP=0;DSTUTTER=5;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|4:1:0.5:68:0:5:1:34.88|33.12:0|0:42.62:0:43:-0.44:-6|3;-4|18;2|2;4|13:-6|3;-4|15;2|2;4|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
797 chr21 16142592 GANGSTR_437530 AAATAAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16142592;END=16142601;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
798 chr21 16155589 GANGSTR_437531 AACAAACAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16155589;END=16155600;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
799 chr21 16159123 GANGSTR_437532 ACTAACTAACTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16159123;END=16159134;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
800 chr21 16159466 GANGSTR_437533 AATAATAATAAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16159466;END=16159477;PERIOD=3;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:1:0:36.50|36.50:0|0:.:0:.:0:0|49;3|1:0|46;3|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
801 chr21 16162963 GANGSTR_437535 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=16162963;END=16162977;PERIOD=5;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
802 chr21 16164167 GANGSTR_437536 ACTGTACTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16164167;END=16164176;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
803 chr21 16168181 GANGSTR_437538 CCACCACCACCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16168181;END=16168192;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
804 chr21 16168585 GANGSTR_437539 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16168585;END=16168596;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
805 chr21 16171357 GANGSTR_437540 CATAATAACATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16171357;END=16171372;PERIOD=8;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:1:35.00|35.00:0|0:.:0:.:0:0|34:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
806 chr21 16183311 GANGSTR_437541 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16183311;END=16183322;PERIOD=3;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:1:34.50|34.50:0|0:.:0:.:0:-26|1;0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
807 chr21 16185092 GANGSTR_437542 AGAAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=16185092;END=16185101;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:2:29.00|29.00:0|0:.:0:.:0:-1|1;0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
808 chr21 16189339 GANGSTR_437543 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16189339;END=16189350;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
809 chr21 16199467 GANGSTR_437544 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16199467;END=16199478;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
810 chr21 16206358 GANGSTR_437545 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16206358;END=16206369;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
811 chr21 16208015 GANGSTR_437546 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16208015;END=16208026;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
812 chr21 16212394 GANGSTR_437547 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16212394;END=16212405;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
813 chr21 16215562 GANGSTR_437548 AAGAAGAAGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16215562;END=16215573;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|47:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
814 chr21 16223166 GANGSTR_437549 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16223166;END=16223177;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
815 chr21 16233332 GANGSTR_437550 GGCCTGGCCTGGCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16233332;END=16233346;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
816 chr21 16239959 GANGSTR_437551 CTTTTAAACTTTTAAACTTTTAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16239959;END=16239982;PERIOD=8;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|39:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
817 chr21 16241797 GANGSTR_437552 AGGGAGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16241797;END=16241808;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
818 chr21 16244063 GANGSTR_437553 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . . INFRAME_PGEOM=1;INFRAME_UP=0.06;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=16244063;END=16244098;PERIOD=2;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=5;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:5:2:20.50|20.50:0|0:.:0:.:0:-22|1;-2|1;0|13;3|1:-2|1;0|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
819 chr21 16260259 GANGSTR_437555 GTTTTGTTTTGTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16260259;END=16260273;PERIOD=5;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
820 chr21 16261257 GANGSTR_437556 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16261257;END=16261268;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|27:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
821 chr21 16262076 GANGSTR_437557 TCTCTCTCTCTC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16262076;END=16262087;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:1:0:25.50|25.50:0|0:.:0:.:0:-2|1;0|39:-2|1;0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
822 chr21 16269944 GANGSTR_437560 ATATATATATAT ATATATATAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16269944;END=16269955;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:56:0:0:0:28.00|28.00:0|0:13.97:0:.:0:-2|48:-2|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
823 chr21 16273025 GANGSTR_437562 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16273025;END=16273039;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
824 chr21 16273752 GANGSTR_437563 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16273752;END=16273763;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
825 chr21 16278446 GANGSTR_437565 TTGTTTTGTTTTGTTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16278446;END=16278465;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
826 chr21 16281078 GANGSTR_437566 TTCCTTCCTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16281078;END=16281089;PERIOD=4;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:0:39.50|39.50:0|0:.:0:.:0:0|55:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
827 chr21 16285688 GANGSTR_437567 AATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16285688;END=16285702;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
828 chr21 16296074 GANGSTR_437568 AAGTCAAGTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16296074;END=16296083;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
829 chr21 16296904 GANGSTR_437569 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16296904;END=16296915;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
830 chr21 16299928 GANGSTR_437570 GCCTGCCTGCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16299928;END=16299939;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
831 chr21 16306190 GANGSTR_437571 TTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=16306190;END=16306204;PERIOD=5;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
832 chr21 16311311 GANGSTR_437572 TGATGATGATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16311311;END=16311322;PERIOD=3;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
833 chr21 16311774 GANGSTR_437573 AGGCAGGCAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16311774;END=16311785;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
834 chr21 16319166 GANGSTR_437574 AAATAAATAAATAAATAAATAAATAAATAAAT AAATAAATAAATAAATAAATAAATAAATAAATAAAT,AAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT . . INFRAME_PGEOM=0.98;INFRAME_UP=0.11;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=16319166;END=16319197;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4,8;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:4|8:1:0.5:47:0:0:0:23.48|23.52:0|0:3.42:0:21:-1.52:1|1;4|10;8|9:4|8;8|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
835 chr21 16320646 GANGSTR_437575 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.99;INFRAME_UP=0.08;INFRAME_DOWN=0.19;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=16320646;END=16320685;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,0;DP=66;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|0:1:0.5:66:0:3:0:35.82|30.18:0|0:3.26:-0.96:32:0:-4|2;-2|13;0|9:-4|2;-2|10;0|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
836 chr21 16322110 GANGSTR_437576 CTCACTCACTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16322110;END=16322121;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
837 chr21 16325987 GANGSTR_437577 ACGAAACAAAACA AGGAAACAAAACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16325990;END=16325999;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:57:0:0:0:27.00|30.00:0|0:84.66:-0.11:51:-0.4:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
838 chr21 16327301 GANGSTR_437578 TGGGGTGGGGTGGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16327301;END=16327315;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
839 chr21 16327747 GANGSTR_437579 AGGGAGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16327747;END=16327758;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
840 chr21 16329173 GANGSTR_437580 AGGGAGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16329173;END=16329184;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
841 chr21 16353567 GANGSTR_437581 ACTTACTTACTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16353567;END=16353578;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
842 chr21 16358321 GANGSTR_437582 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16358321;END=16358332;PERIOD=4;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:0:0:40.00|40.00:0|0:.:0:.:0:0|55:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
843 chr21 16358648 GANGSTR_437583 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16358648;END=16358659;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
844 chr21 16361254 GANGSTR_437584 GAGGAGAGGAGAGGAGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16361254;END=16361273;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
845 chr21 16364534 GANGSTR_437585 TGTTTGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16364534;END=16364549;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:29.91|25.09:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
846 chr21 16369154 GANGSTR_437587 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=16369154;END=16369165;PERIOD=4;NSKIP=0;NFILT=0;DP=34;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:34:0:0:0:17.00|17.00:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
847 chr21 16371333 GANGSTR_437588 AGAGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16371333;END=16371346;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:1:1:27.00|27.00:0|0:.:0:.:0:-2|1;0|32:-2|1;0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
848 chr21 16382385 GANGSTR_437589 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16382385;END=16382396;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
849 chr21 16387095 GANGSTR_437590 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16387095;END=16387106;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:1:32.00|32.00:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
850 chr21 16389549 GANGSTR_437591 ATTTTTATTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16389549;END=16389560;PERIOD=6;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|49:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
851 chr21 16401376 GANGSTR_437592 GAATCCAGAATCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16401376;END=16401389;PERIOD=7;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
852 chr21 16402147 GANGSTR_437593 AAATAAATAAATAAATAAAT AAATAAATAAATAAAT . . INFRAME_PGEOM=0.96;INFRAME_UP=0.08;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16402147;END=16402166;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:57:0:0:0:30.85|26.15:0|0:6.21:-0.41:34:-0.14:-4|13;0|17:-4|13;0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
853 chr21 16416141 GANGSTR_437594 TTGTTTGTTTGT TTGTTTGT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.05;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16416141;END=16416152;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:64:0:0:2:34.73|29.27:0|0:18.09:-0.32:50:-0.41:-4|20;0|26:-4|20;0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
854 chr21 16419863 GANGSTR_437595 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16419863;END=16419874;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:1:34.50|34.50:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
855 chr21 16421289 GANGSTR_437596 ACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16421289;END=16421300;PERIOD=2;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:1:0:33.00|33.00:0|0:.:0:.:0:-54|1;-2|1;0|49:-2|1;0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
856 chr21 16421751 GANGSTR_437597 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16421751;END=16421762;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
857 chr21 16433803 GANGSTR_437598 AGGGAGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16433803;END=16433814;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
858 chr21 16437350 GANGSTR_437599 CCGCCCGCCCGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16437350;END=16437361;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|27:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
859 chr21 16437882 GANGSTR_437600 CACCCACCCACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16437882;END=16437893;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
860 chr21 16442627 GANGSTR_437601 ACACACACACACACACACACACACACACA ACACACACACACACACACACACG . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16442627;END=16442654;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=68;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-6:1:0.5:68:0:1:0:33.50|34.50:0|0:206.84:0:53:0:-6|24;-2|1;0|16:-6|21;-2|1;0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
861 chr21 16444514 GANGSTR_437602 TTCCATTCCATTCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16444514;END=16444528;PERIOD=5;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:41.00|33.00:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
862 chr21 16445270 GANGSTR_437603 TGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTTTT . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16445270;END=16445295;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=60;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-6:1:0.5:60:0:1:0:31.99|28.01:0|0:288.36:-0.17:52:-0.79:-7|3;-6|15;-2|1;0|22:-6|16;-2|1;0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
863 chr21 16451185 GANGSTR_437604 ACACACACACACACACACACAC . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16451185;END=16451206;PERIOD=2;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=3;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:3:1:34.00|34.00:0|0:.:0:.:0:-6|1;-2|2;0|43:-2|2;0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
864 chr21 16456324 GANGSTR_437605 AATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16456324;END=16456331;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
865 chr21 16456787 GANGSTR_437606 GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16456789;END=16456822;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=57;DSNP=0;DSTUTTER=4;DFLANKINDEL=2;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:57:0:4:2:28.50|28.50:0|0:10.03:0:.:0:0|28;3|1:-2|3;0|21;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
866 chr21 16462491 GANGSTR_437607 TATATATATATATATATATA TATATATATATATATATATATA,TATATATATATATATATATATATA . . INFRAME_PGEOM=0.97;INFRAME_UP=0.08;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=16462491;END=16462510;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2,4;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:2|4:1:0.5:46:0:0:0:25.54|20.46:0|0:7.49:-0.41:34:-0.14:-32|3;-18|1;-1|1;2|12;4|9:2|11;4|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
867 chr21 16462584 GANGSTR_437608 TCCCTCCCTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16462584;END=16462595;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
868 chr21 16462932 GANGSTR_437609 AAATAACAAATAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16462932;END=16462945;PERIOD=7;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|35:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
869 chr21 16465430 GANGSTR_437610 GCAATGCAATGCAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16465430;END=16465444;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
870 chr21 16470038 GANGSTR_437611 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16470038;END=16470053;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
871 chr21 16472624 GANGSTR_437612 CTACTACTACTACTACTACTACTACTACTA CTACTACTACTACTACTACTACTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16472624;END=16472653;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-6|-6:1:1:76:0:0:1:38.00|38.00:0|0:15.9:0:.:0:-6|50:-6|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
872 chr21 16472987 GANGSTR_437613 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16472987;END=16472998;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
873 chr21 16474704 GANGSTR_437614 CAAAAACAAAAACAAAAACAAAAACAAAAAAAACC CAAAAACAAAAACAAAAACAAAAACAAAAAAAACCCATAACACTTAT . . INFRAME_PGEOM=0.91;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=16474704;END=16474733;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=12;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=8;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:12|12:1:1:60:0:0:0:30.00|30.00:0|0:11.18:0:.:0:-4|3;0|2;12|12:12|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
874 chr21 16476771 GANGSTR_437615 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16476771;END=16476786;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
875 chr21 16478406 GANGSTR_437616 ATTTTTATTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16478406;END=16478417;PERIOD=6;NSKIP=0;NFILT=0;DP=83;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:83:0:0:0:41.50|41.50:0|0:.:0:.:0:0|60:0|60:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
876 chr21 16479310 GANGSTR_437617 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.99;INFRAME_UP=0.06;INFRAME_DOWN=0.23;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=16479310;END=16479351;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4,4;DP=49;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|4:1:0.5:49:0:3:0:22.76|26.24:0|0:20.23:-0.28:22:0:-15|1;-6|1;-4|8;-2|1;2|2;4|7:-4|7;2|2;4|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
877 chr21 16490283 GANGSTR_437618 AATAATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16490283;END=16490300;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|33:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
878 chr21 16491371 GANGSTR_437619 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16491371;END=16491385;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
879 chr21 16510443 GANGSTR_437620 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.97;INFRAME_UP=0.26;INFRAME_DOWN=0.13;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16510443;END=16510472;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=65;DSNP=0;DSTUTTER=14;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:65:0:14:1:32.50|32.50:0|0:7.05:0:.:0:0|8;2|21;4|10:0|1;2|21;4|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
880 chr21 16511561 GANGSTR_437621 AAAGAAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16511561;END=16511570;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
881 chr21 16517615 GANGSTR_437622 TACATACATACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16517615;END=16517626;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
882 chr21 16521417 GANGSTR_437623 AATGTAAATGTAAATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16521417;END=16521434;PERIOD=6;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:2:28.50|28.50:0|0:.:0:.:0:0|31;14|1:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
883 chr21 16522653 GANGSTR_437624 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16522653;END=16522664;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
884 chr21 16523075 GANGSTR_437625 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16523075;END=16523086;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
885 chr21 16523663 GANGSTR_437626 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16523663;END=16523674;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|53:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
886 chr21 16527410 GANGSTR_437627 ACTCACTCACTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16527410;END=16527421;PERIOD=4;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
887 chr21 16528120 GANGSTR_437628 CACACACACACACACACACACACACACACACACACACACA CACACACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACACACACACACA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.14;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=16528120;END=16528159;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,6;DP=46;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|6:1:0.5:46:0:3:0:26.61|19.39:0|0:8.88:-0.51:24:-0.17:-34|1;-4|1;-2|11;-1|1;0|2;6|4:-4|1;-2|10;0|2;6|4:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
888 chr21 16528375 GANGSTR_437629 TATTATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16528375;END=16528389;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|48:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
889 chr21 16534044 GANGSTR_437630 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16534044;END=16534059;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
890 chr21 16536305 GANGSTR_437631 ACTTACTTACTTAACG ACTTACTTACTTAACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16536305;END=16536316;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:49:0:0:0:27.50|21.50:0|0:68.62:-0.35:44:-0.12:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
891 chr21 16540266 GANGSTR_437632 ACACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16540266;END=16540281;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:2:1:28.00|28.00:0|0:.:0:.:0:-2|1;0|38;2|1:0|32;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
892 chr21 16541242 GANGSTR_437633 TTAAATTAAATTAAATTAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16541242;END=16541261;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
893 chr21 16546319 GANGSTR_437634 TTGATTGATTGATTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16546319;END=16546334;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
894 chr21 16550125 GANGSTR_437636 AATTAATTAATTAATT AATTAATTAATTAT . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.92;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=16550125;END=16550140;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=59;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:59:0:1:1:28.12|30.88:0|0:113.29:-0.05:50:-0.11:-4|1;-2|11;-1|1;0|17:-4|1;-2|13;0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
895 chr21 16550662 GANGSTR_437637 ACCACCACCACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16550662;END=16550673;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
896 chr21 16558684 GANGSTR_437638 CCCTCCCTCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16558684;END=16558695;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
897 chr21 16561872 GANGSTR_437639 TTCATATTCATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16561872;END=16561883;PERIOD=6;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
898 chr21 16564767 GANGSTR_437640 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16564767;END=16564778;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
899 chr21 16565067 GANGSTR_437641 TTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAA TTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=16565067;END=16565116;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-5;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-5|-5:1:1:63:0:0:0:31.50|31.50:0|0:3.82:0:.:0:-5|11:-5|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
900 chr21 16573781 GANGSTR_437642 TTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=16573781;END=16573795;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:-1|1;0|40:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
901 chr21 16583444 GANGSTR_437643 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16583444;END=16583458;PERIOD=5;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:1:39.50|39.50:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
902 chr21 16587965 GANGSTR_437644 CTTCTTCTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.94;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.06;START=16587965;END=16587976;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:3:31.00|31.00:0|0:.:0:.:0:-1|2;0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
903 chr21 16589401 GANGSTR_437645 AAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16589401;END=16589420;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
904 chr21 16592556 GANGSTR_437646 GGTGGTGGTGGTGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16592556;END=16592570;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|47:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
905 chr21 16593495 GANGSTR_437648 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16593495;END=16593506;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
906 chr21 16600164 GANGSTR_437649 AGACATAGACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16600164;END=16600175;PERIOD=6;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
907 chr21 16600735 GANGSTR_437650 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=16600735;END=16600776;PERIOD=2;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:1:1:35.00|35.00:0|0:.:0:.:0:-2|2;0|22:-2|1;0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
908 chr21 16601547 GANGSTR_437651 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16601547;END=16601558;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|42:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
909 chr21 16602792 GANGSTR_437652 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16602792;END=16602807;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|27:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
910 chr21 16604026 GANGSTR_437653 TTCTTCTTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16604026;END=16604037;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|45:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
911 chr21 16604918 GANGSTR_437654 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16604918;END=16604929;PERIOD=3;NSKIP=0;NFILT=0;DP=84;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:84:0:0:0:42.00|42.00:0|0:.:0:.:0:0|60:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
912 chr21 16605648 GANGSTR_437655 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16605648;END=16605659;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
913 chr21 16606982 GANGSTR_437656 ATTGATTGATTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16606982;END=16606993;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
914 chr21 16616052 GANGSTR_437658 GTTAGGTTAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16616052;END=16616061;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
915 chr21 16617817 GANGSTR_437659 TAGGAGGGTAGGAGGGTAGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16617817;END=16617840;PERIOD=8;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|39:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
916 chr21 16627067 GANGSTR_437662 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16627067;END=16627078;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
917 chr21 16627690 GANGSTR_437663 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16627690;END=16627701;PERIOD=2;NSKIP=0;NFILT=0;DP=82;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:82:0:0:0:41.00|41.00:0|0:.:0:.:0:0|57:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
918 chr21 16629327 GANGSTR_437664 TTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16629327;END=16629341;PERIOD=3;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|27:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
919 chr21 16633739 GANGSTR_437665 TTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16633739;END=16633753;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
920 chr21 16638111 GANGSTR_437666 TTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16638111;END=16638122;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
921 chr21 16638468 GANGSTR_437667 TGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16638468;END=16638483;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|42:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
922 chr21 16642069 GANGSTR_437668 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16642069;END=16642080;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
923 chr21 16643033 GANGSTR_437669 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16643033;END=16643044;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|40:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
924 chr21 16643195 GANGSTR_437670 CAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16643195;END=16643210;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
925 chr21 16644341 GANGSTR_437671 TGTTATTATTATTATTATTATTATTATTATTATTATTATTATTA TATTATTATTATTATTATTATTATTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=16644343;END=16644384;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-18;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-18|-18:1:1:54:0:0:0:27.00|27.00:0|0:13.52:0:.:0:-18|32:-18|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
926 chr21 16647797 GANGSTR_437672 AACCAACCAACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16647797;END=16647808;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
927 chr21 16649399 GANGSTR_437673 ATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16649399;END=16649414;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
928 chr21 16652013 GANGSTR_437674 TCTCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16652013;END=16652028;PERIOD=2;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|29:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
929 chr21 16652160 GANGSTR_437675 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16652160;END=16652171;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
930 chr21 16654836 GANGSTR_437676 GAGAGGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16654836;END=16654845;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
931 chr21 16657105 GANGSTR_437677 TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTA TTTATTTATTTATTTATTTATTTATTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=16657105;END=16657144;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-12;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-12|-12:1:1:52:0:0:0:26.00|26.00:0|0:8.4:0:.:0:-12|26:-12|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
932 chr21 16663246 GANGSTR_437678 TTCTTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16663246;END=16663255;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
933 chr21 16669645 GANGSTR_437679 TTGTTTTGTTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16669645;END=16669659;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
934 chr21 16677499 GANGSTR_437681 TCCCTCCCTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=16677499;END=16677510;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:1:1:32.00|32.00:0|0:.:0:.:0:-1|1;0|49:-4|1;0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
935 chr21 16683271 GANGSTR_437682 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=16683271;END=16683285;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:1:1:29.50|29.50:0|0:.:0:.:0:-1|1;0|48:-5|1;0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
936 chr21 16709950 GANGSTR_437683 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16709950;END=16709961;PERIOD=3;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|60:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
937 chr21 16712345 GANGSTR_437684 AGATGCAAAGATGCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16712345;END=16712360;PERIOD=8;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|32:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
938 chr21 16715192 GANGSTR_437685 TTACTTACTTAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16715192;END=16715203;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
939 chr21 16716025 GANGSTR_437686 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16716025;END=16716036;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
940 chr21 16720633 GANGSTR_437687 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16720633;END=16720644;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
941 chr21 16721219 GANGSTR_437688 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16721219;END=16721228;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
942 chr21 16723196 GANGSTR_437689 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=16723196;END=16723207;PERIOD=2;NSKIP=0;NFILT=0;DP=33;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:33:0:0:0:16.50|16.50:0|0:.:0:.:0:0|21:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
943 chr21 16729644 GANGSTR_437691 ACACACACACACACACACAC . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.03;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16729644;END=16729663;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:2:1:26.50|26.50:0|0:.:0:.:0:-2|2;0|30:-2|2;0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
944 chr21 16729818 GANGSTR_437692 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16729818;END=16729829;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
945 chr21 16735727 GANGSTR_437694 CCTCCTCCTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16735727;END=16735738;PERIOD=3;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
946 chr21 16740379 GANGSTR_437695 ATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16740379;END=16740388;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
947 chr21 16741625 GANGSTR_437696 AAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16741625;END=16741644;PERIOD=5;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
948 chr21 16742341 GANGSTR_437697 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16742341;END=16742352;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
949 chr21 16745961 GANGSTR_437698 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16745961;END=16745972;PERIOD=3;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
950 chr21 16746827 GANGSTR_437699 ATATGATATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16746827;END=16746836;PERIOD=5;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|55:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
951 chr21 16749085 GANGSTR_437701 TCCTCCTCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16749085;END=16749096;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
952 chr21 16768560 GANGSTR_437702 AGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16768560;END=16768571;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|48;2|1:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
953 chr21 16769976 GANGSTR_437703 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16769976;END=16769987;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
954 chr21 16770470 GANGSTR_437704 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16770470;END=16770484;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
955 chr21 16772734 GANGSTR_437705 TTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16772734;END=16772741;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
956 chr21 16784574 GANGSTR_437706 TGTGTGTGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16784574;END=16784599;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
957 chr21 16800212 GANGSTR_437707 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16800212;END=16800223;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
958 chr21 16803325 GANGSTR_437708 CTTCCCCCTTCCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16803325;END=16803338;PERIOD=7;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|29:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
959 chr21 16804871 GANGSTR_437709 AGCAAGCAAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16804871;END=16804882;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
960 chr21 16814054 GANGSTR_437710 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16814054;END=16814065;PERIOD=3;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|55:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
961 chr21 16814730 GANGSTR_437711 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16814730;END=16814741;PERIOD=3;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|28:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
962 chr21 16816287 GANGSTR_437712 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16816287;END=16816298;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|58:0|58:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
963 chr21 16820715 GANGSTR_437713 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16820715;END=16820726;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
964 chr21 16823136 GANGSTR_437714 TTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16823136;END=16823144;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|46:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
965 chr21 16829308 GANGSTR_437715 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16829308;END=16829319;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
966 chr21 16840141 GANGSTR_437716 TCTATCTATCTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16840141;END=16840152;PERIOD=4;NSKIP=0;NFILT=0;DP=81;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:81:0:0:0:40.50|40.50:0|0:.:0:.:0:0|57:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
967 chr21 16843965 GANGSTR_437717 ACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.87;INFRAME_UP=0.05;INFRAME_DOWN=0.14;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=16843965;END=16844002;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=49;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:49:0:3:0:25.99|23.01:0|0:14.32:0:27:-0.36:-8|1;-3|1;-2|2;0|12;2|1;3|1;4|7:-2|2;0|12;4|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
968 chr21 16844292 GANGSTR_437718 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16844292;END=16844303;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
969 chr21 16847374 GANGSTR_437719 TTTGATTTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16847374;END=16847383;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
970 chr21 16861620 GANGSTR_437720 AAAATAAAATAAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16861620;END=16861644;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
971 chr21 16862159 GANGSTR_437721 GTTTGTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16862159;END=16862174;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
972 chr21 16864861 GANGSTR_437722 TAAATAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16864861;END=16864876;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
973 chr21 16869517 GANGSTR_437723 TCTTCCTCTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16869517;END=16869528;PERIOD=6;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|34:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
974 chr21 16876140 GANGSTR_437724 CATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16876140;END=16876151;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
975 chr21 16877121 GANGSTR_437725 TTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16877121;END=16877135;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
976 chr21 16878617 GANGSTR_437726 AGGAAGGAAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16878617;END=16878628;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
977 chr21 16879295 GANGSTR_437727 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16879295;END=16879306;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
978 chr21 16882540 GANGSTR_437729 AAATTAAATTAAATTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16882540;END=16882559;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:1:34.50|29.50:0|0:.:0:.:0:-1|1;0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
979 chr21 16891763 GANGSTR_437731 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.94;INFRAME_UP=0.05;INFRAME_DOWN=0.16;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=16891763;END=16891810;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-10,2;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 2|1:2|-10:1:0.5:54:0:1:2:21.48|32.52:0|0:4.74:-0.79:51:-0.11:-12|1;-10|12;0|1;2|5:-12|1;-10|11;2|4:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
980 chr21 16897497 GANGSTR_437732 TCCTCCTCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16897497;END=16897508;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:1:34.00|34.00:0|0:.:0:.:0:0|53:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
981 chr21 16899507 GANGSTR_437733 CTGCCTGCCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16899507;END=16899518;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
982 chr21 16902321 GANGSTR_437734 GGAGGGAGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16902321;END=16902332;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
983 chr21 16906414 GANGSTR_437735 ATATATATATATATATATAT ATATATATATATATATATATAT,ATATATATATATATATATATATAT . . INFRAME_PGEOM=0.96;INFRAME_UP=0.11;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.68;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.08;START=16906414;END=16906433;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2,4;DP=30;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:2|4:0.99:0.49:30:0:1:0:17.03|12.97:0|0:1.88:-0.42:21:0:-1|1;0|1;2|11;4|7;6|1:2|12;4|7;6|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
984 chr21 16908455 GANGSTR_437736 CATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16908455;END=16908466;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
985 chr21 16911324 GANGSTR_437737 CTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16911324;END=16911335;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|45;17|1:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
986 chr21 16914051 GANGSTR_437738 AAATTAAATTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16914051;END=16914065;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
987 chr21 16926404 GANGSTR_437739 GGTTGGTTGGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16926404;END=16926415;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|38:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
988 chr21 16931880 GANGSTR_437741 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16931880;END=16931891;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
989 chr21 16933150 GANGSTR_437743 AAACCAAAACCAAAACCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16933150;END=16933167;PERIOD=6;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|36:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
990 chr21 16942326 GANGSTR_437744 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16942326;END=16942337;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
991 chr21 16949570 GANGSTR_437747 GTTGGTTGGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16949570;END=16949581;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
992 chr21 16955327 GANGSTR_437748 ATATATATATAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.07;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=16955327;END=16955338;PERIOD=2;NSKIP=0;NFILT=0;DP=32;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:32:0:1:0:16.00|16.00:0|0:.:0:.:0:0|23;2|1:0|21;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
993 chr21 16961021 GANGSTR_437749 TTTTATTTTATTTTA TTTAATTTTATTTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.06;START=16961021;END=16961035;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:53:0:0:1:26.50|26.50:0|0:14.08:0:.:0:-1|1;0|26:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
994 chr21 16962440 GANGSTR_437750 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16962440;END=16962451;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
995 chr21 16963230 GANGSTR_437751 TATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16963230;END=16963237;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
996 chr21 16963983 GANGSTR_437752 ATTGATTGATTGATTGATTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16963983;END=16964002;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|30:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
997 chr21 16965296 GANGSTR_437753 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16965296;END=16965307;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
998 chr21 16980238 GANGSTR_437755 AGAAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16980238;END=16980247;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
999 chr21 16981194 GANGSTR_437756 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16981194;END=16981203;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:-5|1;0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1000 chr21 16986754 GANGSTR_437757 GCTGCTGCTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=16986754;END=16986765;PERIOD=3;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|56:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1001 chr21 16991370 GANGSTR_437758 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16991370;END=16991385;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1002 chr21 16995955 GANGSTR_437759 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=16995955;END=16995966;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1003 chr21 17001573 GANGSTR_437760 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=17001573;END=17001618;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=65;DSNP=0;DSTUTTER=2;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-6:1:0.5:65:0:2:2:23.50|41.50:0|0:25.09:-1.94:46:-0.94:-8|1;-6|20;-2|1;0|4:-6|16;-2|1;0|4:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1004 chr21 17003641 GANGSTR_437761 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17003641;END=17003652;PERIOD=2;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|33:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1005 chr21 17012612 GANGSTR_437762 TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=17012612;END=17012651;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|15:0|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1006 chr21 17017496 GANGSTR_437763 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17017496;END=17017511;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|35:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1007 chr21 17022689 GANGSTR_437764 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17022689;END=17022700;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1008 chr21 17027524 GANGSTR_437765 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17027524;END=17027539;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1009 chr21 17031862 GANGSTR_437766 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . . INFRAME_PGEOM=0.96;INFRAME_UP=0.23;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17031862;END=17031903;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=12;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:12:0:31.50|31.50:0|0:.:0:.:0:-2|3;0|17;2|8:-2|1;0|14;2|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1010 chr21 17036911 GANGSTR_437767 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17036911;END=17036920;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:24.01|33.99:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1011 chr21 17038820 GANGSTR_437768 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17038820;END=17038831;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1012 chr21 17045826 GANGSTR_437769 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17045826;END=17045840;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1013 chr21 17047034 GANGSTR_437770 AAATTAAATTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17047034;END=17047048;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1014 chr21 17051154 GANGSTR_437771 ACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.9;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=17051154;END=17051189;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=47;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:47:0:1:0:29.42|17.58:0|0:9.95:-1.54:26:0:0|18;2|1;4|7:0|18;4|5:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1015 chr21 17053019 GANGSTR_437772 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17053019;END=17053033;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1016 chr21 17060863 GANGSTR_437773 ACAACAACAACAACAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17060863;END=17060880;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1017 chr21 17068208 GANGSTR_437774 AAAGAAAAGAAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17068208;END=17068222;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1018 chr21 17069039 GANGSTR_437775 AAGAAAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17069039;END=17069050;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1019 chr21 17073843 GANGSTR_437776 ATAAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17073843;END=17073852;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1020 chr21 17076994 GANGSTR_437777 AAACACACACACACACACACACAC ACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17076996;END=17077017;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=56;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:56:0:1:1:29.49|26.51:0|0:88.7:-0.12:43:-0.14:0|34:0|16;2|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1021 chr21 17080941 GANGSTR_437778 AAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17080941;END=17080960;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1022 chr21 17081994 GANGSTR_437780 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17081994;END=17082005;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1023 chr21 17086698 GANGSTR_437781 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=17086698;END=17086733;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,8;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|8:1:0.5:54:0:1:0:26.02|27.98:0|0:14.17:-0.06:40:0:-4|1;-2|11;0|4;8|8:-4|1;-2|10;8|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1024 chr21 17091385 GANGSTR_437782 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17091385;END=17091396;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1025 chr21 17091773 GANGSTR_437783 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17091773;END=17091784;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1026 chr21 17099968 GANGSTR_437785 AGGAAAGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17099968;END=17099977;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1027 chr21 17102682 GANGSTR_437786 CGCCGCCGCCGCCGCCGCCGCCGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17102682;END=17102705;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|40:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1028 chr21 17102841 GANGSTR_437787 CGCCGCCGCCGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17102841;END=17102852;PERIOD=3;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1029 chr21 17106177 GANGSTR_437789 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17106177;END=17106186;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1030 chr21 17114138 GANGSTR_437790 TTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17114138;END=17114145;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1031 chr21 17116145 GANGSTR_437791 CCTGCCTGCCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17116145;END=17116156;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1032 chr21 17116643 GANGSTR_437792 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17116643;END=17116654;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1033 chr21 17116906 GANGSTR_437793 TTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17116906;END=17116920;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1034 chr21 17123172 GANGSTR_437795 GCCTCCGCCTCCGCCTCCGCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17123172;END=17123195;PERIOD=6;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:1:33.50|33.50:0|0:.:0:.:0:0|32:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1035 chr21 17145091 GANGSTR_437796 ATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17145091;END=17145100;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1036 chr21 17167773 GANGSTR_437797 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17167773;END=17167784;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1037 chr21 17177095 GANGSTR_437798 AGCAGCAGCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17177095;END=17177106;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1038 chr21 17179412 GANGSTR_437799 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17179412;END=17179426;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1039 chr21 17179991 GANGSTR_437800 TGTCTGTCTGTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17179991;END=17180002;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1040 chr21 17180866 GANGSTR_437801 TGTGTGTGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.84;INFRAME_UP=0.02;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17180866;END=17180891;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:3:0:32.50|32.50:0|0:.:0:.:0:-4|1;-2|2;0|35:-4|1;-2|2;0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1041 chr21 17183576 GANGSTR_437802 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17183576;END=17183587;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|53:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1042 chr21 17189467 GANGSTR_437803 TCATCATCATCATCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17189467;END=17189481;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:3:24.50|24.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1043 chr21 17190001 GANGSTR_437804 AGAGAAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17190001;END=17190010;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1044 chr21 17191680 GANGSTR_437805 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17191680;END=17191691;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1045 chr21 17191951 GANGSTR_437806 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17191951;END=17191962;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1046 chr21 17198453 GANGSTR_437807 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17198453;END=17198464;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1047 chr21 17201317 GANGSTR_437808 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17201317;END=17201328;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|49:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1048 chr21 17205346 GANGSTR_437809 AACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17205346;END=17205354;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1049 chr21 17211470 GANGSTR_437810 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17211470;END=17211481;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:-1|1;0|37:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1050 chr21 17218828 GANGSTR_437811 GTTTTGTTTTGTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17218828;END=17218842;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1051 chr21 17223823 GANGSTR_437812 ACACACACACACACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17223823;END=17223846;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:1:1:27.50|27.50:0|0:.:0:.:0:-2|2;0|32:-2|1;0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1052 chr21 17226293 GANGSTR_437813 ATCATCATCATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17226293;END=17226304;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1053 chr21 17226456 GANGSTR_437814 TTTGTTTTGTTTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17226456;END=17226480;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:1:32.00|32.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1054 chr21 17231444 GANGSTR_437815 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17231444;END=17231455;PERIOD=2;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:1:20.00|20.00:0|0:.:0:.:0:0|25:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1055 chr21 17232475 GANGSTR_437816 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=17232475;END=17232490;PERIOD=4;NSKIP=0;NFILT=0;DP=30;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:30:0:0:0:15.00|15.00:0|0:.:0:.:0:0|19:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1056 chr21 17233657 GANGSTR_437817 AAAAAGTTAAAAAAGTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17233657;END=17233674;PERIOD=9;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=6;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:1:34.50|34.50:0|0:.:0:.:0:0|31:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1057 chr21 17245425 GANGSTR_437818 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17245425;END=17245439;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1058 chr21 17245892 GANGSTR_437819 CTCACCTCAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17245892;END=17245901;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1059 chr21 17254196 GANGSTR_437820 TTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17254196;END=17254205;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1060 chr21 17255169 GANGSTR_437821 GTTGTTGTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17255169;END=17255180;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1061 chr21 17263683 GANGSTR_437822 ACACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.98;INFRAME_UP=0.09;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=17263683;END=17263728;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=68;DSNP=0;DSTUTTER=3;DFLANKINDEL=2;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:68:0:3:2:34.00|34.00:0|0:5.51:0:.:0:-7|1;-4|2;-2|18;-1|1;0|2:-4|1;-2|19;0|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1062 chr21 17266120 GANGSTR_437823 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17266120;END=17266134;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1063 chr21 17267077 GANGSTR_437824 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17267077;END=17267088;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1064 chr21 17273221 GANGSTR_437825 AAATAAAATAAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17273221;END=17273235;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1065 chr21 17277294 GANGSTR_437826 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17277294;END=17277308;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1066 chr21 17278129 GANGSTR_437827 AGTGAGTGAGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17278129;END=17278140;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1067 chr21 17279053 GANGSTR_437828 TTTATATTTATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17279053;END=17279064;PERIOD=6;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|43:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1068 chr21 17283543 GANGSTR_437829 TTCTTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17283543;END=17283552;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1069 chr21 17292518 GANGSTR_437831 AGGCAGGCAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17292518;END=17292529;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1070 chr21 17299311 GANGSTR_437832 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17299311;END=17299322;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|42:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1071 chr21 17325335 GANGSTR_437834 TTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17325335;END=17325346;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1072 chr21 17328826 GANGSTR_437835 ATATATATATATATATATAT . . . INFRAME_PGEOM=0.98;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17328826;END=17328845;PERIOD=2;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:2:0:19.50|19.50:0|0:.:0:.:0:-2|1;0|23;2|1:-2|1;0|22;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1073 chr21 17332890 GANGSTR_437836 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17332890;END=17332901;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:1:25.50|25.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1074 chr21 17333630 GANGSTR_437837 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17333630;END=17333644;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1075 chr21 17333738 GANGSTR_437838 TTCCCTTCCCTTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17333738;END=17333752;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1076 chr21 17339656 GANGSTR_437839 TTATATTATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17339656;END=17339665;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1077 chr21 17340986 GANGSTR_437840 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17340986;END=17340997;PERIOD=2;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|49:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1078 chr21 17342239 GANGSTR_437841 ATCATCATCATCATCATCATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17342239;END=17342259;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1079 chr21 17343651 GANGSTR_437842 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17343651;END=17343662;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1080 chr21 17346663 GANGSTR_437843 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17346663;END=17346674;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1081 chr21 17347160 GANGSTR_437844 AATAAATAAATAAATAAATAAATAAATAAATAAATAAATA AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=17347160;END=17347199;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:44:0:0:0:22.00|22.00:0|0:4.92:0:.:0:-1|1;1|1;4|15:4|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1082 chr21 17359865 GANGSTR_437845 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17359865;END=17359876;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:1:33.00|33.00:0|0:.:0:.:0:0|51:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1083 chr21 17366955 GANGSTR_437847 TCTTTCTTTCTTTCTTTCTT TCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=17366955;END=17366974;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=16;DP=28;DSNP=0;DSTUTTER=6;DFLANKINDEL=4;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:16|16:1:1:28:0:6:4:14.00|14.00:0|0:5.06:0:.:0:-17|1;0|9;13|1;14|1;16|1:12|2;16|1;20|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1084 chr21 17377029 GANGSTR_437848 ACACACACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17377029;END=17377048;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|31:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1085 chr21 17384108 GANGSTR_437849 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.94;INFRAME_UP=0.03;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17384108;END=17384139;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-12;DP=60;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-12|-12:1:1:60:0:2:1:30.00|30.00:0|0:12.05:0:.:0:-14|2;-12|38:-14|2;-12|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1086 chr21 17395182 GANGSTR_437850 CTTCTCTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17395182;END=17395191;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1087 chr21 17395921 GANGSTR_437851 CCTGTACCTGTACCTGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17395921;END=17395938;PERIOD=6;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:1:1:34.50|34.50:0|0:.:0:.:0:0|45;4|1:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1088 chr21 17408551 GANGSTR_437852 ATTAATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17408551;END=17408562;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|53:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1089 chr21 17409009 GANGSTR_437853 TTATTTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17409009;END=17409028;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1090 chr21 17414503 GANGSTR_437854 GGGAGAGAGAGAGAGAGA GCGAGAGAGAGAGAGAGA . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17414505;END=17414520;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=76;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:76:0:1:0:33.99|42.01:0|0:101.54:-0.41:66:-0.09:-2|1;0|54:-2|1;0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1091 chr21 17416213 GANGSTR_437855 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17416213;END=17416224;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1092 chr21 17435483 GANGSTR_437858 TGATTTTGATTTTGATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17435483;END=17435500;PERIOD=6;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:37.00|31.00:0|0:.:0:.:0:0|39:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1093 chr21 17435694 GANGSTR_437859 AATTTTAAAATTTTAAAATTTTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17435694;END=17435717;PERIOD=8;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|44:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1094 chr21 17442030 GANGSTR_437860 ATAAAATAAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17442030;END=17442044;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1095 chr21 17443416 GANGSTR_437861 TGTGTGTGTGTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17443416;END=17443427;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:1:0:30.50|30.50:0|0:.:0:.:0:-2|1;0|46:-2|1;0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1096 chr21 17454320 GANGSTR_437862 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17454320;END=17454331;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1097 chr21 17454883 GANGSTR_437863 TTGTTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17454883;END=17454892;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:3:30.50|30.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1098 chr21 17457721 GANGSTR_437864 TAATTTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17457721;END=17457730;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1099 chr21 17461958 GANGSTR_437865 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=17461958;END=17461973;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:1:32.00|32.00:0|0:.:0:.:0:-1|1;0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1100 chr21 17462629 GANGSTR_437866 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17462629;END=17462640;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1101 chr21 17463943 GANGSTR_437867 ATTTATTTATTTATTTATTT ATTTATTTATTTATTTATTTATTTATTT . . INFRAME_PGEOM=0.91;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=17463943;END=17463962;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=8;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|8:1:0.5:54:0:0:0:25.51|28.49:0|0:23.92:-0.14:31:-0.14:-14|4;0|13;8|9:0|13;8|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1102 chr21 17466295 GANGSTR_437868 TTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17466295;END=17466314;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1103 chr21 17467978 GANGSTR_437869 AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT AGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.09;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=17467978;END=17468021;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=73;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:73:0:1:1:38.83|34.17:0|0:2.33:-0.27:24:-0.17:-8|1;-4|8;0|12:-8|1;-4|8;0|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1104 chr21 17473405 GANGSTR_437870 TTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17473405;END=17473419;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1105 chr21 17473810 GANGSTR_437871 TTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17473810;END=17473819;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1106 chr21 17476702 GANGSTR_437872 TTTGTTTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17476702;END=17476721;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1107 chr21 17484632 GANGSTR_437873 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17484632;END=17484643;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1108 chr21 17485041 GANGSTR_437874 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17485041;END=17485056;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:1:35.50|35.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1109 chr21 17487189 GANGSTR_437875 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17487189;END=17487200;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1110 chr21 17487475 GANGSTR_437876 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17487475;END=17487489;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1111 chr21 17493052 GANGSTR_437877 TTTCTTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.06;START=17493052;END=17493067;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:5:22.00|22.00:0|0:.:0:.:0:-1|1;0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1112 chr21 17494083 GANGSTR_437878 TTTCTTTTCTTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17494083;END=17494097;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1113 chr21 17503349 GANGSTR_437879 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17503349;END=17503363;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1114 chr21 17508274 GANGSTR_437880 GCAAGCAAGCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17508274;END=17508285;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:1:2:31.00|31.00:0|0:.:0:.:0:0|43;6|1:-4|1;0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1115 chr21 17508582 GANGSTR_437881 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17508582;END=17508593;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1116 chr21 17526537 GANGSTR_437882 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17526537;END=17526548;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1117 chr21 17529094 GANGSTR_437883 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17529094;END=17529105;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1118 chr21 17534083 GANGSTR_437884 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17534083;END=17534098;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1119 chr21 17539464 GANGSTR_437886 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=17539464;END=17539507;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-10,-2;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-10|-2:1:0.5:68:0:0:2:31.01|36.99:0|0:19.68:-0.32:50:-0.25:-10|16;-8|1;-6|1;-2|13:-10|15;-2|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1120 chr21 17542573 GANGSTR_437887 TGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17542573;END=17542588;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1121 chr21 17544574 GANGSTR_437888 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17544574;END=17544585;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1122 chr21 17545964 GANGSTR_437890 TATTTTATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17545964;END=17545983;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1123 chr21 17546855 GANGSTR_437891 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17546855;END=17546866;PERIOD=2;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|27:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1124 chr21 17549524 GANGSTR_437892 ATTAATATTAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17549524;END=17549535;PERIOD=6;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|32:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1125 chr21 17550998 GANGSTR_437893 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17550998;END=17551009;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1126 chr21 17555631 GANGSTR_437896 GTTTTTGTTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17555631;END=17555642;PERIOD=6;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:1:33.50|33.50:0|0:.:0:.:0:0|45:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1127 chr21 17562358 GANGSTR_437898 CCTCCCTCCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17562358;END=17562369;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1128 chr21 17564211 GANGSTR_437899 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17564211;END=17564222;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1129 chr21 17565055 GANGSTR_437900 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17565055;END=17565066;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1130 chr21 17569631 GANGSTR_437901 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.73;INFRAME_UP=0.03;INFRAME_DOWN=0.16;OUTFRAME_PGEOM=0.62;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.13;START=17569631;END=17569662;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=52;DSNP=0;DSTUTTER=5;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:52:0:5:0:26.00|26.00:0|0:9:0:.:0:-6|1;-2|1;1|4;2|4;4|24:-2|1;2|4;4|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1131 chr21 17570909 GANGSTR_437902 TCTCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.99;INFRAME_UP=0.03;INFRAME_DOWN=0.13;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17570909;END=17570924;PERIOD=2;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=3;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:3:1:21.00|21.00:0|0:.:0:.:0:-2|3;0|23:-2|3;0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1132 chr21 17582008 GANGSTR_437903 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17582008;END=17582022;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1133 chr21 17589878 GANGSTR_437904 ATCTTCCATCTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17589878;END=17589891;PERIOD=7;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|45:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1134 chr21 17591693 GANGSTR_437905 ATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17591693;END=17591700;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1135 chr21 17593390 GANGSTR_437908 ATTAATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17593390;END=17593401;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1136 chr21 17594083 GANGSTR_437909 CTTTCTCTTTCTCTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17594083;END=17594100;PERIOD=6;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|30:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1137 chr21 17613087 GANGSTR_437911 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17613087;END=17613098;PERIOD=3;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1138 chr21 17623697 GANGSTR_437912 TTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17623697;END=17623716;PERIOD=5;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:0:39.50|39.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1139 chr21 17624264 GANGSTR_437913 AGCATAAGCATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17624264;END=17624275;PERIOD=6;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1140 chr21 17624984 GANGSTR_437914 TGTATGTGTATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17624984;END=17624995;PERIOD=6;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1141 chr21 17626152 GANGSTR_437915 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17626152;END=17626163;PERIOD=2;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|31:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1142 chr21 17632350 GANGSTR_437916 TATATATATATAGTA TATATATATATATAGTG . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.62;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.08;START=17632350;END=17632361;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=55;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:55:0:2:0:27.50|27.50:0|0:14.78:0:.:0:-1|3;0|3;2|38;4|1:0|1;2|38;4|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1143 chr21 17636051 GANGSTR_437917 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17636051;END=17636062;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1144 chr21 17636479 GANGSTR_437918 TTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17636479;END=17636486;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1145 chr21 17640495 GANGSTR_437919 ACATACATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17640495;END=17640506;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1146 chr21 17641103 GANGSTR_437920 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17641103;END=17641114;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1147 chr21 17642242 GANGSTR_437921 ATATATATATATAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17642242;END=17642255;PERIOD=2;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:1:0:34.00|34.00:0|0:.:0:.:0:-2|1;0|46:-2|1;0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1148 chr21 17647708 GANGSTR_437922 AAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17647708;END=17647715;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1149 chr21 17647834 GANGSTR_437923 AGAATAGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17647834;END=17647843;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1150 chr21 17650905 GANGSTR_437924 ATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17650905;END=17650913;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1151 chr21 17654086 GANGSTR_437925 TGAATTGAATTGTT TGAATTGAATTGTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17654086;END=17654095;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:68:0:0:0:34.00|34.00:0|0:16.56:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1152 chr21 17655480 GANGSTR_437926 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17655480;END=17655491;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1153 chr21 17656023 GANGSTR_437927 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17656023;END=17656034;PERIOD=3;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:1:35.50|35.50:0|0:.:0:.:0:0|55:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1154 chr21 17656980 GANGSTR_437928 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.91;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=17656980;END=17657025;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-20,-16;DP=62;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-20|-16:1:0.5:62:0:1:0:30.54|31.46:0|0:31.62:-0:39:-0.13:-20|18;-16|14;-10|1:-20|16;-18|1;-16|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1155 chr21 17666081 GANGSTR_437929 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17666081;END=17666092;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1156 chr21 17669049 GANGSTR_437930 CAAACAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17669049;END=17669068;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1157 chr21 17675051 GANGSTR_437931 TTTGTTTGTTTGTTTG TTTGTTTGTTTTTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17675051;END=17675066;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:62:0:0:0:31.00|31.00:0|0:15.34:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1158 chr21 17680852 GANGSTR_437932 AAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17680852;END=17680866;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1159 chr21 17683812 GANGSTR_437933 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17683812;END=17683826;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1160 chr21 17688019 GANGSTR_437934 ATTCATATTCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17688019;END=17688030;PERIOD=6;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1161 chr21 17689550 GANGSTR_437935 TTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17689550;END=17689557;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1162 chr21 17696916 GANGSTR_437936 TATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=17696916;END=17696929;PERIOD=2;NSKIP=0;NFILT=0;DP=29;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:29:0:0:3:14.50|14.50:0|0:.:0:.:0:0|15;1|3:0|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1163 chr21 17697951 GANGSTR_437937 TATATATATATA TATATATATATATA . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17697951;END=17697962;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=56;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:56:0:1:2:28.00|28.00:0|0:11.69:0:.:0:0|4;2|41;17|1:0|1;2|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1164 chr21 17698256 GANGSTR_437938 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=17698256;END=17698295;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=57;DSNP=0;DSTUTTER=1;DFLANKINDEL=3;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-6|-6:1:1:57:0:1:3:28.50|28.50:0|0:11.42:0:.:0:-19|1;-10|1;-8|2;-6|30:-8|1;-6|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1165 chr21 17700493 GANGSTR_437939 AACAAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17700493;END=17700502;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1166 chr21 17718170 GANGSTR_437940 TTTAGTTTAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17718170;END=17718179;PERIOD=5;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|56:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1167 chr21 17727848 GANGSTR_437942 AATAAAATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17727848;END=17727862;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1168 chr21 17728075 GANGSTR_437943 ATTTTTATTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17728075;END=17728086;PERIOD=6;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:1:1:36.00|36.00:0|0:.:0:.:0:-4|1;0|48:-6|1;0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1169 chr21 17731508 GANGSTR_437945 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17731508;END=17731519;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1170 chr21 17732658 GANGSTR_437947 TTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=17732658;END=17732672;PERIOD=3;NSKIP=0;NFILT=0;DP=22;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:22:0:0:0:11.00|11.00:0|0:.:0:.:0:0|14:0|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1171 chr21 17737509 GANGSTR_437948 ACATACATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17737509;END=17737520;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:1:23.50|23.50:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1172 chr21 17739774 GANGSTR_437949 ACTCACTCACTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17739774;END=17739785;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1173 chr21 17740272 GANGSTR_437950 ATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17740272;END=17740280;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1174 chr21 17741391 GANGSTR_437951 AAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17741391;END=17741405;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1175 chr21 17742874 GANGSTR_437952 ATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17742874;END=17742881;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1176 chr21 17749059 GANGSTR_437953 TTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17749059;END=17749073;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1177 chr21 17752380 GANGSTR_437954 ATTGATTGATTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=17752380;END=17752391;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|24:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1178 chr21 17755380 GANGSTR_437955 TCAATCAATCAG TCAATCAATCAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17755380;END=17755387;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:60:0:0:0:36.99|23.01:0|0:66.49:-1.12:54:-0.8:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1179 chr21 17758288 GANGSTR_437956 TTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17758288;END=17758297;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1180 chr21 17762725 GANGSTR_437957 AGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17762725;END=17762732;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1181 chr21 17763345 GANGSTR_437958 CCATCCATCCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17763345;END=17763356;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1182 chr21 17765439 GANGSTR_437959 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17765439;END=17765450;PERIOD=3;NSKIP=0;NFILT=0;DP=32;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:32:0:0:0:16.00|16.00:0|0:.:0:.:0:0|27:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1183 chr21 17765620 GANGSTR_437960 TTATTATTATTATTATTATTATTATTA TTATTATTATTATTATTATTATTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=17765620;END=17765646;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=31;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-3|-3:1:1:31:0:0:0:15.50|15.50:0|0:5.04:0:.:0:-3|16:-3|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1184 chr21 17775478 GANGSTR_437961 TGCTTGCTTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17775478;END=17775489;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:27.50|18.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1185 chr21 17775654 GANGSTR_437962 TTATTTTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17775654;END=17775668;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:32.50|30.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1186 chr21 17778106 GANGSTR_437963 AAATAAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17778106;END=17778129;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1187 chr21 17782351 GANGSTR_437964 GTATACATGTATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17782351;END=17782366;PERIOD=8;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:1:21.00|21.00:0|0:.:0:.:0:0|26:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1188 chr21 17787477 GANGSTR_437965 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17787477;END=17787492;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:1:23.00|23.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1189 chr21 17789914 GANGSTR_437966 ATATATATATATATATATATATATATAT ATATATATATATATAT,ATATATATATATATATATATATATATATATATATATATATAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=17789914;END=17789941;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-12,14;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-12|14:1:0.5:39:0:0:0:27.99|11.01:0|0:12.81:-3.66:21:0:-12|18;2|1;14|1:-12|18;14|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1190 chr21 17792201 GANGSTR_437967 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17792201;END=17792212;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1191 chr21 17804211 GANGSTR_437968 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17804211;END=17804222;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1192 chr21 17808281 GANGSTR_437969 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17808281;END=17808292;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:23.50|30.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1193 chr21 17810659 GANGSTR_437970 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17810659;END=17810674;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|26:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1194 chr21 17819714 GANGSTR_437972 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17819714;END=17819725;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1195 chr21 17829351 GANGSTR_437974 AATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17829351;END=17829359;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|42:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1196 chr21 17829679 GANGSTR_437975 ATAATTATAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17829679;END=17829690;PERIOD=6;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|33:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1197 chr21 17833528 GANGSTR_437976 CTTCTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17833528;END=17833536;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|35:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1198 chr21 17838347 GANGSTR_437977 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17838347;END=17838358;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1199 chr21 17839880 GANGSTR_437978 TGCCAATGCCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17839880;END=17839891;PERIOD=6;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|42:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1200 chr21 17850816 GANGSTR_437979 TTTGATTTGATTTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17850816;END=17850830;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|54:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1201 chr21 17852609 GANGSTR_437980 TATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17852609;END=17852622;PERIOD=2;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|46:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1202 chr21 17854186 GANGSTR_437981 TTATTTATTTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=17854186;END=17854209;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|21:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1203 chr21 17856929 GANGSTR_437982 TGTATATGTATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=17856929;END=17856940;PERIOD=6;NSKIP=0;NFILT=0;DP=21;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:21:0:0:0:10.50|10.50:0|0:.:0:.:0:0|16:0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1204 chr21 17863960 GANGSTR_437983 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17863960;END=17863971;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1205 chr21 17864067 GANGSTR_437984 AACAACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17864067;END=17864084;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1206 chr21 17868047 GANGSTR_437985 AGGAGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17868047;END=17868058;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1207 chr21 17871824 GANGSTR_437986 AACCAACCAACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17871824;END=17871835;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|36:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1208 chr21 17875368 GANGSTR_437987 CAAAACAAAACAAAACAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17875368;END=17875397;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1209 chr21 17878023 GANGSTR_437988 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17878023;END=17878042;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1210 chr21 17891886 GANGSTR_437989 ATTAATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17891886;END=17891897;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|45:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1211 chr21 17893222 GANGSTR_437990 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=1;INFRAME_UP=0.09;INFRAME_DOWN=0.18;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=17893222;END=17893261;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=58;DSNP=0;DSTUTTER=2;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:58:0:2:2:29.44|28.56:0|0:4.81:-0:25:-1.01:-4|2;-2|8;-1|1;0|10:-4|2;-2|8;0|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1212 chr21 17893860 GANGSTR_437991 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17893860;END=17893871;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1213 chr21 17900509 GANGSTR_437992 TCTTTCTTTCTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17900509;END=17900524;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1214 chr21 17902914 GANGSTR_437993 TTCTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17902914;END=17902921;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1215 chr21 17907330 GANGSTR_437994 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17907330;END=17907345;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:1:24.50|24.50:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1216 chr21 17913893 GANGSTR_437996 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17913893;END=17913904;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1217 chr21 17919022 GANGSTR_437997 GTAGTAGTAGTAGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17919022;END=17919036;PERIOD=3;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|51:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1218 chr21 17920808 GANGSTR_437998 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17920808;END=17920823;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1219 chr21 17921708 GANGSTR_437999 AAATAAAATAAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=17921708;END=17921722;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:1:32.00|32.00:0|0:.:0:.:0:-1|1;0|43:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1220 chr21 17927657 GANGSTR_438000 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17927657;END=17927668;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1221 chr21 17928246 GANGSTR_438001 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17928246;END=17928257;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1222 chr21 17930213 GANGSTR_438002 ACTTACTTACTTACTTACTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17930213;END=17930232;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1223 chr21 17931130 GANGSTR_438003 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17931130;END=17931145;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:1:36.50|36.50:0|0:.:0:.:0:-9|1;0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1224 chr21 17931647 GANGSTR_438004 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17931647;END=17931658;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1225 chr21 17936710 GANGSTR_438005 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17936710;END=17936729;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1226 chr21 17940380 GANGSTR_438006 TTATTTTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17940380;END=17940394;PERIOD=5;NSKIP=0;NFILT=0;DP=83;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:83:0:0:1:41.50|41.50:0|0:.:0:.:0:0|56:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1227 chr21 17942726 GANGSTR_438007 GAATGAATGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17942726;END=17942737;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1228 chr21 17944756 GANGSTR_438008 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17944756;END=17944767;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1229 chr21 17947854 GANGSTR_438009 AAAACAAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17947854;END=17947878;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|27:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1230 chr21 17960064 GANGSTR_438010 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17960064;END=17960073;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|54:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1231 chr21 17960559 GANGSTR_438011 GTGAGGTGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17960559;END=17960568;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1232 chr21 17961045 GANGSTR_438012 CAGTCAGTCAGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17961045;END=17961056;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1233 chr21 17968592 GANGSTR_438013 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17968592;END=17968603;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1234 chr21 17971447 GANGSTR_438014 TCATTCATTCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17971447;END=17971458;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1235 chr21 17974700 GANGSTR_438015 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17974700;END=17974711;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1236 chr21 17984849 GANGSTR_438016 AAATAAATAAATAAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=17984849;END=17984880;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|21:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1237 chr21 17987784 GANGSTR_438017 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17987784;END=17987795;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|29:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1238 chr21 17988887 GANGSTR_438018 ATTTTTGTATTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.07;START=17988887;END=17988902;PERIOD=8;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:2:22.50|22.50:0|0:.:0:.:0:-1|1;0|23:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1239 chr21 17991058 GANGSTR_438019 AATTCAATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17991058;END=17991067;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1240 chr21 17994563 GANGSTR_438020 GAATGAATGAATGAATGAATGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17994563;END=17994586;PERIOD=4;NSKIP=0;NFILT=0;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:78:0:0:0:39.00|39.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1241 chr21 17995912 GANGSTR_438021 TTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=17995912;END=17995921;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:31.50|21.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1242 chr21 17996799 GANGSTR_438022 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17996799;END=17996814;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1243 chr21 17997553 GANGSTR_438023 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17997553;END=17997564;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:43.37|30.63:0|0:.:0:.:0:0|56:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1244 chr21 17998758 GANGSTR_438024 CTATCTATCTAT CTATTTATCTAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17998758;END=17998769;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:56:0:0:0:26.49|29.51:0|0:85.06:-0.11:51:-0.4:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1245 chr21 17999118 GANGSTR_438025 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=17999118;END=17999129;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1246 chr21 18000554 GANGSTR_438026 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18000554;END=18000565;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1247 chr21 18001403 GANGSTR_438027 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18001403;END=18001414;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|52:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1248 chr21 18011425 GANGSTR_438028 CTGTTCTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18011425;END=18011434;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1249 chr21 18013103 GANGSTR_438029 GTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.21;INFRAME_DOWN=0.27;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=18013103;END=18013130;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4,6;DP=50;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:4|6:1:0.5:50:0:3:0:21.23|28.77:0|0:39.59:-0.64:34:-0.14:0|5;2|1;3|2;4|5;6|7;8|2:2|1;4|4;6|8;8|2:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1250 chr21 18014853 GANGSTR_438030 TATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18014853;END=18014862;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1251 chr21 18019478 GANGSTR_438031 TTTCTATTTCTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18019478;END=18019489;PERIOD=6;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|46:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1252 chr21 18024807 GANGSTR_438032 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18024807;END=18024818;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1253 chr21 18030612 GANGSTR_438033 ACACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.94;INFRAME_UP=0.08;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18030612;END=18030657;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-12,-2;DP=79;DSNP=0;DSTUTTER=5;DFLANKINDEL=3;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-12|-2:1:0.5:79:0:5:3:41.02|37.98:0|0:29.3:-0.05:52:-0.38:-14|2;-12|22;-10|2;-9|1;-4|1;-2|20:-14|1;-12|22;-10|2;-2|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1254 chr21 18030785 GANGSTR_438034 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18030785;END=18030796;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.99|33.01:0|0:.:0:.:0:0|51:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1255 chr21 18032922 GANGSTR_438035 AAAACAAAACAAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=18032922;END=18032951;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|21:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1256 chr21 18044622 GANGSTR_438036 CATACATACATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18044622;END=18044633;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:33.00|27.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1257 chr21 18045423 GANGSTR_438037 ACACACACACACACACACACACAC ACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.94;INFRAME_UP=0.04;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=18045423;END=18045446;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=8;DP=55;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|8:1:0.5:55:0:2:0:33.47|21.53:0|0:40.61:-1.14:38:-0.3:-2|2;-1|4;0|17;8|5:-2|2;0|15;8|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1258 chr21 18054778 GANGSTR_438038 CCTCCCTCCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=18054778;END=18054789;PERIOD=4;NSKIP=0;NFILT=0;DP=32;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:32:0:0:0:16.00|16.00:0|0:.:0:.:0:0|20:0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1259 chr21 18059963 GANGSTR_438040 AAAGAAAGAAAGAAAGAAAA AAAGAAAGAAAGAAAGAAAG,AAAGAAAGAAAGAAAGAAAGAAAA . . INFRAME_PGEOM=1;INFRAME_UP=0.06;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.06;START=18059963;END=18059978;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0,4;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:0|4:1:0.5:54:0:1:0:27.85|26.15:0|0:17.63:-0.06:42:0:-4|1;0|15;3|1;4|13:-4|1;0|14;4|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1260 chr21 18069598 GANGSTR_438041 TAATTATTATTATT TTATTATTATTATT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18069600;END=18069611;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:51:0:0:0:25.50|25.50:0|0:12.58:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1261 chr21 18072432 GANGSTR_438042 TGTATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18072432;END=18072439;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1262 chr21 18082210 GANGSTR_438043 ATTTAATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18082210;END=18082219;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1263 chr21 18091496 GANGSTR_438045 AACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18091496;END=18091504;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1264 chr21 18092276 GANGSTR_438046 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18092276;END=18092287;PERIOD=4;NSKIP=0;NFILT=0;DP=86;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:86:0:0:1:45.50|40.50:0|0:.:0:.:0:0|58:0|58:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1265 chr21 18094593 GANGSTR_438047 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18094593;END=18094604;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|36:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1266 chr21 18096683 GANGSTR_438048 TACATACATACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18096683;END=18096694;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1267 chr21 18098982 GANGSTR_438049 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18098982;END=18098996;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1268 chr21 18114983 GANGSTR_438051 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18114983;END=18114994;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1269 chr21 18115620 GANGSTR_438052 TCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTC,TCTCTCTCTCTCTCTCTCTCTCTC . . INFRAME_PGEOM=0.87;INFRAME_UP=0.02;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18115620;END=18115641;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,2;DP=68;DSNP=0;DSTUTTER=3;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|2:1:0.5:68:0:3:1:42.44|25.56:0|0:18.6:-1.73:47:-0.13:-4|2;-2|27;0|1;2|12:-4|2;-2|26;0|1;2|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1270 chr21 18136842 GANGSTR_438053 TTTTGTTTTGTTTTGTTTTGTTTTGTTTTGG TTTTGTTTTGTTTTGTTTTGTTTTGT,TTTTGTTTTGTTTTGTTTTGTTTTGTTTTGT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.09;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=18136842;END=18136871;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-5,0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 2|1:0|-5:0.93:0.46:42:0:0:0:24.21|17.79:0|0:1.1:-0.87:22:0:-5|6;0|12:-5|6;0|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1271 chr21 18141466 GANGSTR_438054 TTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18141466;END=18141485;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1272 chr21 18141638 GANGSTR_438055 ATATATATATAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18141638;END=18141649;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:1:0:26.00|26.00:0|0:.:0:.:0:-2|1;0|41:-2|1;0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1273 chr21 18155791 GANGSTR_438056 ACAACAACAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18155791;END=18155802;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1274 chr21 18163046 GANGSTR_438057 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18163046;END=18163061;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1275 chr21 18163792 GANGSTR_438058 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18163792;END=18163803;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1276 chr21 18168121 GANGSTR_438059 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18168121;END=18168132;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:25.99|29.01:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1277 chr21 18172504 GANGSTR_438060 CAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18172504;END=18172518;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1278 chr21 18182725 GANGSTR_438061 AGCTAGCTAGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18182725;END=18182736;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1279 chr21 18183701 GANGSTR_438062 TTTGGTTTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18183701;END=18183710;PERIOD=5;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1280 chr21 18183878 GANGSTR_438063 AATCAATCAATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18183878;END=18183889;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1281 chr21 18188245 GANGSTR_438064 ATTAATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18188245;END=18188256;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1282 chr21 18188355 GANGSTR_438065 AAGAAAAGAAAAGAAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18188355;END=18188374;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1283 chr21 18190060 GANGSTR_438066 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18190060;END=18190071;PERIOD=4;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:1:38.50|38.50:0|0:.:0:.:0:0|55:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1284 chr21 18191303 GANGSTR_438067 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18191303;END=18191314;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|45:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1285 chr21 18193115 GANGSTR_438068 GTTCATAAATAAATAA GCTCATAAATAAATAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18193119;END=18193130;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:69:0:0:0:38.00|31.00:0|0:86.99:-0.38:55:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1286 chr21 18193405 GANGSTR_438069 AAAGAAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18193405;END=18193420;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:4:31.50|31.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1287 chr21 18198180 GANGSTR_438071 ATAGATATAGAT ATAGAT . . INFRAME_PGEOM=0.98;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18198180;END=18198191;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-6:1:0.5:53:0:0:0:28.82|24.18:0|0:16.41:-0.18:46:-0.43:-6|17;0|17:-6|19;0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1288 chr21 18198503 GANGSTR_438072 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18198503;END=18198514;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|54:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1289 chr21 18205388 GANGSTR_438073 ATTTATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18205388;END=18205407;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1290 chr21 18217591 GANGSTR_438074 AAAGAAAGAAAG AAAGAAAGTAAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18217591;END=18217602;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:54:0:0:0:28.41|25.59:0|0:80.61:-0.11:51:-0.11:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1291 chr21 18218981 GANGSTR_438075 ACACACACACACACACAC . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18218981;END=18218998;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:2:0:30.50|30.50:0|0:.:0:.:0:-2|2;0|43:-2|2;0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1292 chr21 18222306 GANGSTR_438076 GGAGGAGGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18222306;END=18222317;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|52:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1293 chr21 18227496 GANGSTR_438077 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18227496;END=18227507;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1294 chr21 18233367 GANGSTR_438079 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18233367;END=18233378;PERIOD=2;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1295 chr21 18235111 GANGSTR_438080 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18235111;END=18235122;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|39:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1296 chr21 18240275 GANGSTR_438081 AGGAGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18240275;END=18240286;PERIOD=3;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1297 chr21 18243618 GANGSTR_438082 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=18243618;END=18243633;PERIOD=4;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:1:19.50|19.50:0|0:.:0:.:0:0|23:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1298 chr21 18257248 GANGSTR_438083 TAAAATAAAATAAAATAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18257248;END=18257267;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1299 chr21 18263087 GANGSTR_438084 AGGACTAGGACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18263087;END=18263098;PERIOD=6;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1300 chr21 18272524 GANGSTR_438085 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18272524;END=18272535;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1301 chr21 18274527 GANGSTR_438086 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18274527;END=18274538;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1302 chr21 18275917 GANGSTR_438087 CATCACATCACATCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18275917;END=18275931;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1303 chr21 18294205 GANGSTR_438088 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18294205;END=18294216;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:1:1:30.50|30.50:0|0:.:0:.:0:0|43;3|1:-3|1;0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1304 chr21 18301614 GANGSTR_438089 TGAATGAATGAATGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=18301614;END=18301637;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|16:0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1305 chr21 18313707 GANGSTR_438091 TGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18313707;END=18313722;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:2:0:26.50|26.50:0|0:.:0:.:0:-2|2;0|38:-2|2;0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1306 chr21 18315013 GANGSTR_438093 TGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18315013;END=18315032;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:1:0:27.50|27.50:0|0:.:0:.:0:-2|1;0|32:-2|1;0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1307 chr21 18322778 GANGSTR_438094 AAATAAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18322778;END=18322801;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:1:24.00|24.00:0|0:.:0:.:0:0|27:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1308 chr21 18323381 GANGSTR_438095 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18323381;END=18323392;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1309 chr21 18326204 GANGSTR_438096 TTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18326204;END=18326219;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1310 chr21 18328160 GANGSTR_438097 CCCTCCCTCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18328160;END=18328171;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|34:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1311 chr21 18329961 GANGSTR_438098 TATGTATGTATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18329961;END=18329972;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1312 chr21 18336595 GANGSTR_438099 TTTTGTTTTGTTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.07;START=18336595;END=18336624;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:-1|1;0|25:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1313 chr21 18337780 GANGSTR_438100 ATGATGATGATGATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18337780;END=18337794;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1314 chr21 18339529 GANGSTR_438101 GCAGCAGCAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18339529;END=18339540;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1315 chr21 18347237 GANGSTR_438103 TTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18347237;END=18347252;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1316 chr21 18348204 GANGSTR_438104 TTCTTCTTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18348204;END=18348215;PERIOD=3;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|49:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1317 chr21 18349456 GANGSTR_438105 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18349456;END=18349467;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1318 chr21 18349625 GANGSTR_438106 ACACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACATACACACACAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=18349625;END=18349670;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-10;DP=55;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-10|-10:1:1:55:0:1:0:27.50|27.50:0|0:11.43:0:.:0:-10|21;-8|2:-10|18;-8|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1319 chr21 18355812 GANGSTR_438107 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18355812;END=18355823;PERIOD=2;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|33:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1320 chr21 18358151 GANGSTR_438108 GGTAAGGTAAGGTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18358151;END=18358165;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1321 chr21 18361970 GANGSTR_438109 TTCTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18361970;END=18361977;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:-21|1;0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1322 chr21 18362138 GANGSTR_438110 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18362138;END=18362149;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1323 chr21 18380213 GANGSTR_438111 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18380213;END=18380224;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1324 chr21 18390190 GANGSTR_438112 TAAAATAAAATAAAATAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18390190;END=18390209;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1325 chr21 18392144 GANGSTR_438113 AATAAATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18392144;END=18392159;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1326 chr21 18393848 GANGSTR_438114 TTGATTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18393848;END=18393855;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1327 chr21 18393933 GANGSTR_438115 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18393933;END=18393944;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1328 chr21 18395206 GANGSTR_438116 TTGTTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18395206;END=18395215;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1329 chr21 18400252 GANGSTR_438117 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18400252;END=18400266;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1330 chr21 18402543 GANGSTR_438118 AAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18402543;END=18402552;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1331 chr21 18412578 GANGSTR_438120 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18412578;END=18412589;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1332 chr21 18412786 GANGSTR_438121 TTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18412786;END=18412800;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1333 chr21 18413861 GANGSTR_438122 TACTTACTTACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18413861;END=18413872;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1334 chr21 18414654 GANGSTR_438123 ACCACCACCACCACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18414654;END=18414668;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1335 chr21 18415653 GANGSTR_438124 TCTCTCTCTCTCTCTCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.73;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18415653;END=18415680;PERIOD=2;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:1:0:34.00|34.00:0|0:.:0:.:0:-4|1;0|32:-4|1;0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1336 chr21 18421070 GANGSTR_438125 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18421070;END=18421081;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|43:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1337 chr21 18431816 GANGSTR_438126 CCCACCCACCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18431816;END=18431827;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|57:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1338 chr21 18452637 GANGSTR_438128 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18452637;END=18452648;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1339 chr21 18457023 GANGSTR_438129 CCCTCCCTCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18457023;END=18457034;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1340 chr21 18459269 GANGSTR_438130 ATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18459269;END=18459282;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1341 chr21 18470889 GANGSTR_438131 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18470889;END=18470900;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1342 chr21 18471664 GANGSTR_438132 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18471664;END=18471675;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|37:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1343 chr21 18474549 GANGSTR_438134 AATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18474549;END=18474554;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1344 chr21 18475523 GANGSTR_438135 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18475523;END=18475537;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1345 chr21 18485651 GANGSTR_438137 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18485651;END=18485662;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1346 chr21 18503011 GANGSTR_438138 TATATATATATATA TATATATATATA . . INFRAME_PGEOM=0.94;INFRAME_UP=0.04;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18503011;END=18503024;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:69:0:0:0:41.08|27.92:0|0:16.95:-1.2:57:-0.11:-2|20;0|34:-2|18;0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1347 chr21 18504463 GANGSTR_438139 AAGAAGAAGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18504463;END=18504474;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1348 chr21 18507382 GANGSTR_438140 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18507382;END=18507396;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1349 chr21 18510439 GANGSTR_438141 GGAGGAGGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18510439;END=18510450;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:34.53|27.47:0|0:.:0:.:0:0|43:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1350 chr21 18511614 GANGSTR_438142 GGAGGGAGGGAGGGAGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18511614;END=18511633;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:1:1:27.50|24.50:0|0:.:0:.:0:0|33:-12|1;0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1351 chr21 18515526 GANGSTR_438143 GTGTGTGTGTGTGTGTGTGT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18515526;END=18515545;PERIOD=2;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:1:1:33.50|33.50:0|0:.:0:.:0:-2|1;0|40:-2|1;0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1352 chr21 18518234 GANGSTR_438144 TGATGATGATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18518234;END=18518245;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1353 chr21 18518606 GANGSTR_438145 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18518606;END=18518617;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1354 chr21 18519179 GANGSTR_438146 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18519179;END=18519190;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1355 chr21 18521279 GANGSTR_438147 AGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18521279;END=18521290;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|40:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1356 chr21 18522480 GANGSTR_438148 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.09;START=18522480;END=18522494;PERIOD=5;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:1:20.50|20.50:0|0:.:0:.:0:-1|1;0|18:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1357 chr21 18527570 GANGSTR_438149 ATCAATCAATCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18527570;END=18527581;PERIOD=4;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:0:38.50|38.50:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1358 chr21 18528872 GANGSTR_438150 AACAGAACAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18528872;END=18528881;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1359 chr21 18530223 GANGSTR_438151 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18530223;END=18530232;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1360 chr21 18530846 GANGSTR_438152 TTACTTACTTAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18530846;END=18530857;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|48:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1361 chr21 18544727 GANGSTR_438153 TTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18544727;END=18544741;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:1:23.50|23.50:0|0:.:0:.:0:0|28;1|1:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1362 chr21 18549790 GANGSTR_438154 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18549790;END=18549805;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1363 chr21 18551066 GANGSTR_438155 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18551066;END=18551077;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1364 chr21 18552257 GANGSTR_438156 AGCCAAACCCAAACCCAAAC AACCAAACCCAAACCCAAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18552259;END=18552276;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:56:0:0:0:26.08|29.92:0|0:81.27:-0.18:48:-0.42:0|31:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1365 chr21 18554026 GANGSTR_438157 AGAGAGAGAGAG . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18554026;END=18554037;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:1:0:24.50|24.50:0|0:.:0:.:0:-2|1;0|34:-2|1;0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1366 chr21 18568482 GANGSTR_438158 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18568482;END=18568493;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1367 chr21 18570092 GANGSTR_438159 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18570092;END=18570103;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1368 chr21 18572616 GANGSTR_438160 TAAATAAATAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18572616;END=18572635;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1369 chr21 18574806 GANGSTR_438161 AAAGAGAAAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18574806;END=18574817;PERIOD=6;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|43:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1370 chr21 18576062 GANGSTR_438162 AAACCCAAAACCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18576062;END=18576075;PERIOD=7;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:1:33.00|33.00:0|0:.:0:.:0:0|45:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1371 chr21 18592859 GANGSTR_438163 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18592859;END=18592870;PERIOD=2;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|59:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1372 chr21 18594645 GANGSTR_438164 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18594645;END=18594656;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1373 chr21 18595144 GANGSTR_438165 TAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18595144;END=18595152;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|57:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1374 chr21 18597128 GANGSTR_438167 ATATATATATATATAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=18597128;END=18597143;PERIOD=2;NSKIP=0;NFILT=0;DP=32;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:32:0:1:0:16.00|16.00:0|0:.:0:.:0:-2|1;0|14:-2|1;0|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1375 chr21 18599510 GANGSTR_438168 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18599510;END=18599521;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1376 chr21 18602907 GANGSTR_438169 AAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18602907;END=18602914;PERIOD=4;NSKIP=0;NFILT=0;DP=35;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:0:0:17.50|17.50:0|0:.:0:.:0:0|26:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1377 chr21 18606171 GANGSTR_438170 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18606171;END=18606182;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1378 chr21 18619459 GANGSTR_438172 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18619459;END=18619470;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1379 chr21 18625707 GANGSTR_438173 TTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18625707;END=18625722;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|31:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1380 chr21 18626000 GANGSTR_438174 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18626000;END=18626011;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1381 chr21 18627233 GANGSTR_438175 ATAAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18627233;END=18627242;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1382 chr21 18628587 GANGSTR_438176 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18628587;END=18628602;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1383 chr21 18644151 GANGSTR_438178 GCCTGCCTGCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18644151;END=18644162;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1384 chr21 18653557 GANGSTR_438180 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18653557;END=18653568;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1385 chr21 18665405 GANGSTR_438181 AGAGGGAGAGGGAGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18665405;END=18665422;PERIOD=6;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1386 chr21 18681022 GANGSTR_438182 GTTTTGTTTTGTTTTGTTTTGTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18681022;END=18681046;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1387 chr21 18692779 GANGSTR_438183 GGAAGGAAGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.02;START=18692779;END=18692790;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|36;1|1:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1388 chr21 18692992 GANGSTR_438184 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18692992;END=18693003;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:33.00|28.00:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1389 chr21 18695693 GANGSTR_438185 AAATAAAATAAAATAT AAATAAAATAAAATAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18695693;END=18695707;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:73:0:0:0:34.00|39.00:0|0:107.67:-0.21:63:-0.68:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1390 chr21 18696177 GANGSTR_438186 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18696177;END=18696186;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1391 chr21 18698382 GANGSTR_438187 ACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.94;INFRAME_UP=0.05;INFRAME_DOWN=0.15;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=18698382;END=18698425;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=55;DSNP=0;DSTUTTER=4;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:55:0:4:1:27.50|27.50:0|0:6.5:0:.:0:-6|4;-4|16:-6|4;-4|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1392 chr21 18700326 GANGSTR_438188 GCCTGCCTGCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18700326;END=18700337;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1393 chr21 18710176 GANGSTR_438191 GTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.99;INFRAME_UP=0.11;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18710176;END=18710199;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,8;DP=56;DSNP=0;DSTUTTER=5;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|8:1:0.5:56:0:5:0:34.00|22.00:0|0:18.62:-1.02:44:-0.92:-64|2;-4|1;-2|19;0|3;6|2;8|8;10|1:-4|1;-2|21;0|1;6|2;8|8;10|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1394 chr21 18729388 GANGSTR_438192 CATGTGTGTGTGTGTG CGTGTGTGTGTGTGTG . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18729390;END=18729403;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=51;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:51:0:1:1:30.92|20.08:0|0:58.36:-0.87:45:-0.12:-2|1;0|37:-2|1;0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1395 chr21 18735788 GANGSTR_438193 CCTGTACCTGTACCTGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18735788;END=18735805;PERIOD=6;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1396 chr21 18736063 GANGSTR_438194 AATAATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18736063;END=18736080;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1397 chr21 18741817 GANGSTR_438195 CACCCACCCACCCCT CACCCACCCACCCCC,CCCCCCCCCCCCCCC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=18741817;END=18741828;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0,0;DP=35;DSNP=0;DSTUTTER=2;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:0|0:1:0.5:35:0:2:2:25.24|9.76:0|0:14.3:-1.87:33:-0.87:0|25:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1398 chr21 18745144 GANGSTR_438196 AAGAAGAAGAAGAAGAAGAAGAAG AAGAAGAAGAAGAAGAAGAAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18745144;END=18745167;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-3|-3:1:1:65:0:0:0:32.50|32.50:0|0:12.49:0:.:0:-3|40:-3|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1399 chr21 18745288 GANGSTR_438197 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18745288;END=18745299;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1400 chr21 18745391 GANGSTR_438198 AGACAGACAGAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18745391;END=18745402;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1401 chr21 18748882 GANGSTR_438199 GCCTGCCTGCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18748882;END=18748893;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1402 chr21 18761077 GANGSTR_438202 CACCACCACCAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18761077;END=18761088;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|35:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1403 chr21 18761870 GANGSTR_438203 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18761870;END=18761881;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|51:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1404 chr21 18763827 GANGSTR_438204 ACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.94;INFRAME_UP=0.07;INFRAME_DOWN=0.13;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=18763827;END=18763870;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=53;DSNP=0;DSTUTTER=3;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:0.69:0.34:53:0:3:2:22.27|30.73:0|0:0.35:-1.06:28:-0.16:-14|1;-4|1;-2|12;0|10:-4|1;-2|14;0|4:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1405 chr21 18764986 GANGSTR_438205 TAAAATAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18764986;END=18764995;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1406 chr21 18765646 GANGSTR_438206 AATTTAATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18765646;END=18765655;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1407 chr21 18767796 GANGSTR_438207 CTTTCTTTCTTTCTTTCTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18767796;END=18767823;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|30:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1408 chr21 18770468 GANGSTR_438208 AGGGAGGGAGGGAGAGA AGGGAGGGAGGGAGAGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18770468;END=18770479;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:46:0:0:0:23.00|23.00:0|0:12.32:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1409 chr21 18790153 GANGSTR_438209 AAGAAGAAGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18790153;END=18790164;PERIOD=3;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1410 chr21 18799227 GANGSTR_438211 AATAAATAAATAAATAAATAAATAAATAAATA AATAAATAAATAAATAAATAAATAAATAAATAAATAAATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=18799227;END=18799258;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=8;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:8|8:1:1:55:0:0:0:27.50|27.50:0|0:8.96:0:.:0:-32|3;-3|2;0|3;1|1;2|3;8|16:8|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1411 chr21 18801362 GANGSTR_438214 TTCTTTCTTTC TTCTTTCTTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18801362;END=18801369;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:63:0:0:0:33.98|29.02:0|0:96.65:-0.22:57:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1412 chr21 18803267 GANGSTR_438215 AAAATAAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18803267;END=18803286;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1413 chr21 18807238 GANGSTR_438216 AAAAGAAAAGAAAAGAAAAG AAAAAGAAAAGAAAAGAAAAGAAAAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.71;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.04;START=18807238;END=18807257;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=6;DP=42;DSNP=0;DSTUTTER=1;DFLANKINDEL=4;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:6|6:1:1:42:0:1:4:21.00|21.00:0|0:8.57:0:.:0:-13|1;-6|1;0|10;2|1;3|1;4|1;5|2;6|9:6|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1414 chr21 18807996 GANGSTR_438217 GACCAGACCAGACCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18807996;END=18808010;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1415 chr21 18810761 GANGSTR_438218 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18810761;END=18810772;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|50:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1416 chr21 18813604 GANGSTR_438219 AAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18813604;END=18813613;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:1:24.00|24.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1417 chr21 18817914 GANGSTR_438220 TCATCATCATCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18817914;END=18817925;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1418 chr21 18818200 GANGSTR_438221 TTGTTGTTGTTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18818200;END=18818223;PERIOD=3;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1419 chr21 18818932 GANGSTR_438222 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18818932;END=18818943;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1420 chr21 18819590 GANGSTR_438223 GTTTTGGTTTTGGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18819590;END=18819607;PERIOD=6;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|50:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1421 chr21 18820946 GANGSTR_438224 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18820946;END=18820957;PERIOD=4;NSKIP=0;NFILT=0;DP=34;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:34:0:0:0:17.00|17.00:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1422 chr21 18824963 GANGSTR_438225 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18824963;END=18824982;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:28.00|23.00:0|0:.:0:.:0:0|26:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1423 chr21 18825322 GANGSTR_438226 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18825322;END=18825337;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1424 chr21 18829565 GANGSTR_438227 GTTTTTTGTTTTTTGGT GTTTTTTGTTTTTTGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.97;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.05;START=18829565;END=18829578;PERIOD=7;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=0;AC=2;HRUN=6;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-1|-1:1:1:52:0:0:2:26.00|26.00:0|0:7.72:0:.:0:-1|16;0|11:-1|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1425 chr21 18830251 GANGSTR_438228 TCGAATTGAATGAATGAA TTGAATTGAATGAATGAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18830257;END=18830268;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:62:0:0:0:30.00|32.00:0|0:97.35:-0.05:54:-0.54:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1426 chr21 18837946 GANGSTR_438231 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18837946;END=18837957;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1427 chr21 18838542 GANGSTR_438232 TATATATATATA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18838542;END=18838553;PERIOD=2;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:2:0:36.50|36.50:0|0:.:0:.:0:-2|1;0|57:-2|1;0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1428 chr21 18839628 GANGSTR_438233 TTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18839628;END=18839639;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1429 chr21 18840846 GANGSTR_438234 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18840846;END=18840860;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1430 chr21 18842057 GANGSTR_438235 TGTGTGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18842057;END=18842080;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:1:1:28.00|28.00:0|0:.:0:.:0:-2|1;0|36:-2|1;0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1431 chr21 18843603 GANGSTR_438236 TTGTTGTTGTTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18843603;END=18843626;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|32:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1432 chr21 18846310 GANGSTR_438237 CTCTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18846310;END=18846323;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|49:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1433 chr21 18846854 GANGSTR_438238 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18846854;END=18846865;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|48:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1434 chr21 18846924 GANGSTR_438239 TATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18846924;END=18846937;PERIOD=2;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1435 chr21 18849239 GANGSTR_438240 TTTCAGAAAATAAAATAAAATAAAATAAAAT TCTCAGAAAATAAAATAAAATAAAATAAAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18849245;END=18849269;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:64:0:0:0:28.50|35.50:0|0:87.79:-0.38:55:-0.58:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1436 chr21 18852800 GANGSTR_438241 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18852800;END=18852811;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:24.00|30.00:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1437 chr21 18853017 GANGSTR_438242 ATTATTATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18853017;END=18853037;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|29:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1438 chr21 18853940 GANGSTR_438243 GTTTTGGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18853940;END=18853951;PERIOD=6;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|44:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1439 chr21 18857367 GANGSTR_438245 TTTTGTTTTGTTTTG TTTGTTTTGTTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.97;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.04;START=18857367;END=18857381;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:46:0:0:0:27.50|18.50:0|0:28.75:-0.79:33:-0.32:-1|11;0|17:-1|11;0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1440 chr21 18858489 GANGSTR_438246 TTGTTTTGTTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18858489;END=18858503;PERIOD=5;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1441 chr21 18859751 GANGSTR_438247 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.98;INFRAME_UP=0.04;INFRAME_DOWN=0.17;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=18859751;END=18859792;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=74;DSNP=0;DSTUTTER=8;DFLANKINDEL=2;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:74:0:8:2:37.00|37.00:0|0:10:0:.:0:-7|1;-6|7;-4|26:-6|6;-4|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1442 chr21 18862738 GANGSTR_438249 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18862738;END=18862749;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1443 chr21 18864666 GANGSTR_438250 TGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18864666;END=18864680;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.44|28.56:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1444 chr21 18870020 GANGSTR_438251 TTATTATTATTA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18870020;END=18870031;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:1:1:30.00|30.00:0|0:.:0:.:0:-3|1;0|39:-3|1;0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1445 chr21 18872488 GANGSTR_438252 TCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18872488;END=18872501;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:29.52|32.48:0|0:.:0:.:0:0|43:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1446 chr21 18872775 GANGSTR_438253 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18872775;END=18872786;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1447 chr21 18874903 GANGSTR_438254 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18874903;END=18874914;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1448 chr21 18875032 GANGSTR_438255 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18875032;END=18875043;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1449 chr21 18875431 GANGSTR_438256 CAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18875431;END=18875446;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1450 chr21 18876993 GANGSTR_438257 AATTAATTAATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18876993;END=18877012;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:3:34.50|34.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1451 chr21 18885342 GANGSTR_438259 GCCGCCGCCGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=18885342;END=18885353;PERIOD=3;NSKIP=0;NFILT=0;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:36:0:0:5:18.00|18.00:0|0:.:0:.:0:0|22;2|2:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1452 chr21 18887249 GANGSTR_438260 GTTGTTGTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18887249;END=18887260;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|31:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1453 chr21 18893637 GANGSTR_438261 TTATTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18893637;END=18893654;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1454 chr21 18895983 GANGSTR_438262 ATTAAATTAAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=18895983;END=18895997;PERIOD=5;NSKIP=0;NFILT=0;DP=33;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:33:0:0:0:16.50|16.50:0|0:.:0:.:0:0|17:0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1455 chr21 18900119 GANGSTR_438263 TTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18900119;END=18900138;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1456 chr21 18917991 GANGSTR_438264 ATAAAATAAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18917991;END=18918005;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1457 chr21 18925231 GANGSTR_438265 TTTAATTTAATTTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=18925231;END=18925245;PERIOD=5;NSKIP=0;NFILT=0;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:36:0:0:0:18.00|18.00:0|0:.:0:.:0:0|17:0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1458 chr21 18936336 GANGSTR_438266 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18936336;END=18936350;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1459 chr21 18937597 GANGSTR_438267 TGTGACACACACACACACACACACACACACACACAC TGTGACACACACACACACACAC,TTTGACACACACACACACACAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=18937601;END=18937632;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-14,-14;DP=59;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-14|-14:1:0.5:59:0:1:1:38.69|20.31:0|0:15.95:-1.94:46:-4.72:-16|1;-14|42;-13|2:-16|1;-14|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1460 chr21 18938981 GANGSTR_438268 TGTTGTTGTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18938981;END=18938992;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|37:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1461 chr21 18952060 GANGSTR_438270 ATGGTGATGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18952060;END=18952071;PERIOD=6;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|32:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1462 chr21 18952298 GANGSTR_438271 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18952298;END=18952309;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1463 chr21 18956255 GANGSTR_438273 TCCTTCCTTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18956255;END=18956266;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1464 chr21 18957145 GANGSTR_438274 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18957145;END=18957160;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1465 chr21 18959061 GANGSTR_438275 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18959061;END=18959072;PERIOD=3;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|29:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1466 chr21 18969945 GANGSTR_438276 ATATACATATACATATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18969945;END=18969962;PERIOD=6;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|26:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1467 chr21 18973843 GANGSTR_438277 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18973843;END=18973857;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1468 chr21 18986169 GANGSTR_438278 TTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18986169;END=18986183;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1469 chr21 18989619 GANGSTR_438279 TTGTTGTTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18989619;END=18989639;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|34:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1470 chr21 18990848 GANGSTR_438280 TTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=18990848;END=18990857;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1471 chr21 18993116 GANGSTR_438281 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18993116;END=18993127;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1472 chr21 18994591 GANGSTR_438282 CCCACCCCAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18994591;END=18994600;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|54:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1473 chr21 18995586 GANGSTR_438283 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=18995586;END=18995597;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1474 chr21 19001882 GANGSTR_438284 AAACAAAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19001882;END=19001901;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1475 chr21 19004490 GANGSTR_438285 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19004490;END=19004501;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1476 chr21 19007053 GANGSTR_438286 TTTAATTTTTAATTTTTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19007053;END=19007073;PERIOD=7;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|26:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1477 chr21 19008026 GANGSTR_438287 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19008026;END=19008037;PERIOD=2;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|34:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1478 chr21 19008686 GANGSTR_438288 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19008686;END=19008697;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1479 chr21 19010333 GANGSTR_438289 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19010333;END=19010344;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1480 chr21 19014811 GANGSTR_438290 TGTTTGTTTGTTTGTTTGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=19014811;END=19014838;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1481 chr21 19021051 GANGSTR_438291 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19021051;END=19021062;PERIOD=2;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|30:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1482 chr21 19023536 GANGSTR_438292 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19023536;END=19023550;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1483 chr21 19024954 GANGSTR_438293 AAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19024954;END=19024968;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1484 chr21 19026664 GANGSTR_438294 ATGATGATGATGATGATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19026664;END=19026681;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1485 chr21 19030681 GANGSTR_438295 TTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=19030681;END=19030690;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:1:36.00|36.00:0|0:.:0:.:0:0|62:0|62:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1486 chr21 19033999 GANGSTR_438296 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19033999;END=19034014;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1487 chr21 19034337 GANGSTR_438297 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19034337;END=19034348;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1488 chr21 19036396 GANGSTR_438298 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19036396;END=19036407;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1489 chr21 19042652 GANGSTR_438299 TCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTC . . INFRAME_PGEOM=0.97;INFRAME_UP=0.04;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19042652;END=19042673;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:56:0:0:0:25.22|30.78:0|0:10.65:-0.49:37:-0.29:-2|21;0|14:-2|20;0|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1490 chr21 19043092 GANGSTR_438300 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19043092;END=19043103;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1491 chr21 19044570 GANGSTR_438301 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19044570;END=19044581;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1492 chr21 19047575 GANGSTR_438302 ACTGACTGACTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19047575;END=19047586;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:1:25.50|25.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1493 chr21 19055759 GANGSTR_438303 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=19055759;END=19055774;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|23:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1494 chr21 19056139 GANGSTR_438304 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATG . . INFRAME_PGEOM=0.92;INFRAME_UP=0.04;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=19056139;END=19056186;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=48;DSNP=0;DSTUTTER=5;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-6:1:0.5:48:0:5:0:27.98|20.02:0|0:62.24:-0.64:34:0:-7|1;-6|8;-2|3;0|11:-6|8;-4|1;-2|3;0|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1495 chr21 19061520 GANGSTR_438306 TGCTGCTGCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19061520;END=19061531;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.00|29.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1496 chr21 19063385 GANGSTR_438307 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19063385;END=19063396;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1497 chr21 19066414 GANGSTR_438308 TTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19066414;END=19066433;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:0|29:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1498 chr21 19068035 GANGSTR_438309 TTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT TTATTTATTTATTTATTTAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=19068035;END=19068074;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-20;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-20:1:0.5:60:0:0:0:25.51|34.49:0|0:69.9:-0.73:37:-0.29:-20|19;0|9:-20|18;0|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1499 chr21 19069553 GANGSTR_438310 GAGGGAGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19069553;END=19069564;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:31.00|23.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1500 chr21 19075366 GANGSTR_438312 ATGTATGTATGTATGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19075366;END=19075381;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1501 chr21 19075532 GANGSTR_438313 AGTGAGTGAGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19075532;END=19075543;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1502 chr21 19076589 GANGSTR_438315 ACTCAGACAGACAGA AGTCAGACAGACAGA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19076592;END=19076603;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:40:0:0:0:20.00|20.00:0|0:60.46:0:34:-0.14:0|25:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1503 chr21 19083049 GANGSTR_438316 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19083049;END=19083060;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:23.50|30.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1504 chr21 19084610 GANGSTR_438317 CTTCCTTCCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19084610;END=19084621;PERIOD=4;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:1:18.00|20.00:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1505 chr21 19094162 GANGSTR_438318 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19094162;END=19094173;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1506 chr21 19095714 GANGSTR_438319 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19095714;END=19095725;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1507 chr21 19097406 GANGSTR_438320 AATAAATAAATAAATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19097406;END=19097429;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1508 chr21 19102471 GANGSTR_438321 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=19102471;END=19102486;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|19:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1509 chr21 19107534 GANGSTR_438324 CTCTCTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19107534;END=19107549;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:1:0:29.50|29.50:0|0:.:0:.:0:-2|1;0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1510 chr21 19109016 GANGSTR_438325 TGTTGTTGTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19109016;END=19109027;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1511 chr21 19111319 GANGSTR_438326 CCCTCCCTCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19111319;END=19111330;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1512 chr21 19116476 GANGSTR_438327 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19116476;END=19116487;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|49:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1513 chr21 19120381 GANGSTR_438328 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19120381;END=19120396;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1514 chr21 19143409 GANGSTR_438330 TCTGTTCTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19143409;END=19143418;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1515 chr21 19150729 GANGSTR_438331 TATATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19150729;END=19150744;PERIOD=2;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:1:0:22.50|22.50:0|0:.:0:.:0:0|34:-2|1;0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1516 chr21 19154230 GANGSTR_438332 AAACCAAACCAAACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19154230;END=19154244;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1517 chr21 19155855 GANGSTR_438333 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19155855;END=19155866;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|54:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1518 chr21 19161570 GANGSTR_438334 TCACACACACACACACACACACACACACACACACA TAACACACACACACACACACACACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=19161571;END=19161604;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-10;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-10|-10:1:1:52:0:0:1:26.00|26.00:0|0:11.42:0:.:0:-21|1;-10|27:-10|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1519 chr21 19162564 GANGSTR_438335 CAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19162564;END=19162578;PERIOD=5;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:1:37.00|37.00:0|0:.:0:.:0:0|51;2|1:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1520 chr21 19177486 GANGSTR_438336 TTTTAATTTTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19177486;END=19177497;PERIOD=6;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|46:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1521 chr21 19177628 GANGSTR_438337 ACTGACTGATTGATTGAT ATTGACTGATTGATTGAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19177634;END=19177645;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:47:0:0:0:23.50|23.50:0|0:11.41:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1522 chr21 19186307 GANGSTR_438338 AAGCTAAGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.98;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=19186307;END=19186316;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:2:33.50|33.50:0|0:.:0:.:0:-1|1;0|49;1|1:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1523 chr21 19193768 GANGSTR_438339 TTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19193768;END=19193782;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1524 chr21 19199828 GANGSTR_438340 AATAATAATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19199828;END=19199848;PERIOD=3;NSKIP=0;NFILT=0;DP=82;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:82:0:0:0:41.00|41.00:0|0:.:0:.:0:0|51:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1525 chr21 19204276 GANGSTR_438341 CATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19204276;END=19204287;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:33.00|32.00:0|0:.:0:.:0:0|50:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1526 chr21 19210563 GANGSTR_438342 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19210563;END=19210574;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|55:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1527 chr21 19216043 GANGSTR_438343 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19216043;END=19216054;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1528 chr21 19216570 GANGSTR_438344 ATTGATTGATTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19216570;END=19216581;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1529 chr21 19221216 GANGSTR_438345 TCTCTCTCTCTC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19221216;END=19221227;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:1:0:29.00|29.00:0|0:.:0:.:0:-2|1;0|43:-2|1;0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1530 chr21 19223066 GANGSTR_438346 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19223066;END=19223077;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1531 chr21 19229738 GANGSTR_438348 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19229738;END=19229749;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1532 chr21 19231496 GANGSTR_438349 AAATTAAATTA AAATTAAATT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.02;START=19231496;END=19231505;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-1|-1:1:1:57:0:0:0:28.50|28.50:0|0:14.75:0:.:0:-1|40;0|1:-1|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1533 chr21 19232524 GANGSTR_438350 TTCATTCATTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19232524;END=19232543;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1534 chr21 19245316 GANGSTR_438352 TTAAATTAAATTAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19245316;END=19245330;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1535 chr21 19247253 GANGSTR_438353 AAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19247253;END=19247267;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1536 chr21 19250745 GANGSTR_438354 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19250745;END=19250754;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1537 chr21 19253315 GANGSTR_438355 AAAATCAAAATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19253315;END=19253326;PERIOD=6;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|46:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1538 chr21 19261241 GANGSTR_438357 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19261241;END=19261252;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1539 chr21 19264398 GANGSTR_438358 GGGGTGGGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19264398;END=19264407;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1540 chr21 19265141 GANGSTR_438359 GAGAGAGAGAGA . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19265141;END=19265152;PERIOD=2;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:1:0:20.50|20.50:0|0:.:0:.:0:-2|1;0|26:-2|1;0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1541 chr21 19265589 GANGSTR_438360 TGTGATGTGATGTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19265589;END=19265603;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1542 chr21 19271347 GANGSTR_438361 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19271347;END=19271358;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1543 chr21 19280230 GANGSTR_438362 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19280230;END=19280241;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1544 chr21 19280375 GANGSTR_438363 TTATTTATTTAT TTATTTATTTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19280375;END=19280386;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:48:0:0:0:24.00|24.00:0|0:12.31:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1545 chr21 19285397 GANGSTR_438364 TGTATGTATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19285397;END=19285408;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1546 chr21 19289073 GANGSTR_438365 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19289073;END=19289084;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1547 chr21 19293392 GANGSTR_438366 GATAGATAGATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19293392;END=19293403;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1548 chr21 19302196 GANGSTR_438367 CGGCTGCTGCTGCT CTGCTGCTGCTGCT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19302198;END=19302209;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:45:0:0:0:21.50|23.50:0|0:64.12:-0.06:38:-0.29:0|30:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1549 chr21 19302387 GANGSTR_438368 CTGCTGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19302387;END=19302395;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1550 chr21 19304420 GANGSTR_438369 ACAACAACAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19304420;END=19304431;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1551 chr21 19319253 GANGSTR_438370 TCCTATCTTCCTATCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19319253;END=19319268;PERIOD=8;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|40:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1552 chr21 19322698 GANGSTR_438371 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19322698;END=19322709;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1553 chr21 19322815 GANGSTR_438372 ACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.93;INFRAME_UP=0.05;INFRAME_DOWN=0.14;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=19322815;END=19322852;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6;DP=53;DSNP=0;DSTUTTER=3;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|6:1:0.5:53:0:3:1:27.60|25.40:0|0:25.86:0:28:-0:-36|1;-4|1;-2|2;0|10;4|1;6|9:-2|2;0|9;4|1;6|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1554 chr21 19323425 GANGSTR_438373 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.84;INFRAME_UP=0.03;INFRAME_DOWN=0.14;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19323425;END=19323456;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,6;DP=68;DSNP=0;DSTUTTER=4;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|6:1:0.5:68:0:4:0:35.73|32.27:0|0:14.89:-0.27:43:-0.12:-24|1;-17|1;-16|1;-6|1;-4|1;-2|16;4|2;6|8:-6|1;-4|1;-2|15;4|1;6|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1555 chr21 19326340 GANGSTR_438374 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19326340;END=19326351;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1556 chr21 19329674 GANGSTR_438375 CTCCCTCCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19329674;END=19329685;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1557 chr21 19330401 GANGSTR_438376 CCCTCCCTCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19330401;END=19330412;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1558 chr21 19335391 GANGSTR_438377 AATAATAATAATAATAATAAT AAAAATAATAATAATAAT . . INFRAME_PGEOM=0.96;INFRAME_UP=0.18;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.88;OUTFRAME_UP=0.08;OUTFRAME_DOWN=0.18;START=19335391;END=19335411;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-3|-3:1:1:54:0:0:5:27.00|27.00:0|0:13.31:0:.:0:-4|8;-3|21;-2|2;-1|2;0|5:-3|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1559 chr21 19336480 GANGSTR_438378 AAATAAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19336480;END=19336489;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1560 chr21 19339535 GANGSTR_438379 ATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19339535;END=19339544;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1561 chr21 19344166 GANGSTR_438380 ACAACAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19344166;END=19344174;PERIOD=3;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1562 chr21 19346588 GANGSTR_438381 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19346588;END=19346603;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|33:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1563 chr21 19347237 GANGSTR_438382 TATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=19347237;END=19347250;PERIOD=2;NSKIP=0;NFILT=0;DP=23;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:23:0:0:0:11.50|11.50:0|0:.:0:.:0:0|14:0|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1564 chr21 19364865 GANGSTR_438384 ATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19364865;END=19364880;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:1:34.00|34.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1565 chr21 19373181 GANGSTR_438385 CTTTTTCTTTTTCTTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19373181;END=19373198;PERIOD=6;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1566 chr21 19375704 GANGSTR_438386 TTATTTTATTTTATT TTATTTTATT . . INFRAME_PGEOM=0.96;INFRAME_UP=0.09;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=19375704;END=19375718;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-5;DP=32;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-5:1:0.5:32:0:0:0:20.36|11.64:0|0:3.15:-0.91:27:-0.66:-5|8;0|12:-5|8;0|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1567 chr21 19380336 GANGSTR_438387 AACAAAACAAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19380336;END=19380350;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1568 chr21 19380630 GANGSTR_438388 TGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19380630;END=19380651;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=62;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:62:0:1:0:31.00|31.00:0|0:13.69:0:.:0:-4|1;-2|46:-4|1;-2|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1569 chr21 19407586 GANGSTR_438390 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19407586;END=19407597;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1570 chr21 19415309 GANGSTR_438391 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19415309;END=19415320;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|61:0|61:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1571 chr21 19420871 GANGSTR_438392 AAAGAAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19420871;END=19420886;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1572 chr21 19426510 GANGSTR_438393 ATATACATATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19426510;END=19426521;PERIOD=6;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|43:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1573 chr21 19431492 GANGSTR_438394 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19431492;END=19431503;PERIOD=2;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|30:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1574 chr21 19432768 GANGSTR_438395 AAATAAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19432768;END=19432791;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1575 chr21 19437106 GANGSTR_438396 TATGTATGTATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19437106;END=19437117;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1576 chr21 19442848 GANGSTR_438397 GCCTGCCTGCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19442848;END=19442859;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1577 chr21 19457239 GANGSTR_438398 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.04;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=19457239;END=19457278;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:2:0:25.50|25.50:0|0:.:0:.:0:-2|2;0|21:-2|2;0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1578 chr21 19466120 GANGSTR_438399 AGGAAGGAAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19466120;END=19466131;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|51:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1579 chr21 19467480 GANGSTR_438400 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19467480;END=19467491;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1580 chr21 19481154 GANGSTR_438401 GTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG GTTGTGTGTGTGTGTGTGTGTGTGTGTGTG,GGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.98;INFRAME_UP=0.05;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19481156;END=19481189;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6,-4;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-6|-4:1:0.5:60:0:0:1:32.01|27.99:0|0:70.7:-0.17:52:-0.79:-6|17;-4|14:-6|15;-4|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1581 chr21 19488294 GANGSTR_438402 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19488294;END=19488305;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1582 chr21 19491169 GANGSTR_438403 TTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19491169;END=19491176;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|56:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1583 chr21 19494306 GANGSTR_438404 TCTATCTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19494306;END=19494313;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:32.00|31.00:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1584 chr21 19497907 GANGSTR_438405 TTAATTAATTAATTAATTAA TTAATTAATTAATTAATTAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=19497907;END=19497926;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:45:0:0:0:23.50|21.50:0|0:56.39:-0.07:32:-0.16:0|21:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1585 chr21 19502634 GANGSTR_438407 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19502634;END=19502645;PERIOD=3;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.50|23.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1586 chr21 19511317 GANGSTR_438408 TATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19511317;END=19511326;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1587 chr21 19512184 GANGSTR_438409 TGGGAATGGGAATGGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19512184;END=19512201;PERIOD=6;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|47:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1588 chr21 19518280 GANGSTR_438410 TTGTTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19518280;END=19518297;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1589 chr21 19520838 GANGSTR_438411 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19520838;END=19520849;PERIOD=2;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|53:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1590 chr21 19529587 GANGSTR_438412 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19529587;END=19529598;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1591 chr21 19532793 GANGSTR_438413 TCCTCCTCCTCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19532793;END=19532807;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:1:26.50|26.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1592 chr21 19533900 GANGSTR_438414 TTACTTTTTACTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19533900;END=19533913;PERIOD=7;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:33.00|25.00:0|0:.:0:.:0:0|33:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1593 chr21 19535259 GANGSTR_438415 CATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19535259;END=19535270;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1594 chr21 19539527 GANGSTR_438416 TCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.71;INFRAME_UP=0.04;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=19539529;END=19539572;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-12,-2;DP=48;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 2|1:-2|-12:1:0.5:48:0:1:0:23.49|24.51:0|0:50.73:-0:45:-0.42:-14|1;-12|13;-4|1;0|10:-12|12;-4|1;-2|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1595 chr21 19552471 GANGSTR_438418 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19552471;END=19552482;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|46:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1596 chr21 19566030 GANGSTR_438419 AAATAAATAAATAAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=19566030;END=19566061;PERIOD=4;NSKIP=0;NFILT=0;DP=33;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:33:0:0:1:16.50|16.50:0|0:.:0:.:0:0|20:0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1597 chr21 19567346 GANGSTR_438420 TTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT TTATTTATTTATTTATTTATTTATTTATTTATTTAT . . INFRAME_PGEOM=0.96;INFRAME_UP=0.1;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=19567346;END=19567385;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:48:0:0:0:24.43|23.57:0|0:2.68:-0:17:0:-4|6;0|6:-4|6;0|5:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1598 chr21 19569791 GANGSTR_438421 GTGGTGGTGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19569791;END=19569802;PERIOD=3;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|30:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1599 chr21 19570149 GANGSTR_438422 GAAGAAGAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19570149;END=19570160;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1600 chr21 19577771 GANGSTR_438423 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19577771;END=19577782;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1601 chr21 19579181 GANGSTR_438424 ATTATTATTATTATTATTATTATTATTATTATT ATTATTATTATTATTATTATTATTATT . . INFRAME_PGEOM=0.89;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=19579181;END=19579213;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=33;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-6:1:0.5:33:0:0:0:13.07|19.93:0|0:7.28:-0.78:19:-0.49:-6|11;0|4:-6|10;0|4:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1602 chr21 19580154 GANGSTR_438425 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19580154;END=19580168;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1603 chr21 19580477 GANGSTR_438426 TTCTTCTTCTTC TTCTTCTTCTTCTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.92;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.03;START=19580477;END=19580488;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=2;DP=53;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:53:0:1:1:30.85|22.15:0|0:33.53:-0.7:39:0:-1|1;0|35;2|9:-1|1;0|29;2|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1604 chr21 19585351 GANGSTR_438427 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19585351;END=19585362;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1605 chr21 19587232 GANGSTR_438428 ACATACATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19587232;END=19587243;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|55:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1606 chr21 19592720 GANGSTR_438429 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19592720;END=19592731;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1607 chr21 19598984 GANGSTR_438430 TATTATATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19598984;END=19598993;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1608 chr21 19599135 GANGSTR_438431 AGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19599135;END=19599146;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:1:24.50|24.50:0|0:.:0:.:0:-2|1;0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1609 chr21 19600476 GANGSTR_438432 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19600476;END=19600487;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1610 chr21 19601017 GANGSTR_438433 GATTGATTGATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19601017;END=19601028;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|38:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1611 chr21 19612257 GANGSTR_438434 GAGGGAGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19612257;END=19612268;PERIOD=4;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|55:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1612 chr21 19617147 GANGSTR_438435 GCTGCTGCTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19617147;END=19617158;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1613 chr21 19622703 GANGSTR_438437 TGCTGCTGCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19622703;END=19622714;PERIOD=3;NSKIP=0;NFILT=0;DP=32;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:32:0:0:0:16.00|16.00:0|0:.:0:.:0:0|28:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1614 chr21 19623597 GANGSTR_438438 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19623597;END=19623608;PERIOD=3;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1615 chr21 19625626 GANGSTR_438440 TGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19625626;END=19625635;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1616 chr21 19631934 GANGSTR_438441 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19631934;END=19631945;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1617 chr21 19636108 GANGSTR_438442 CTTCTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19636108;END=19636116;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1618 chr21 19643903 GANGSTR_438445 TTTTCTTTTCTTTTC TTTTCTTTTCTTTTCTTTTC . . INFRAME_PGEOM=0.97;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19643903;END=19643917;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=5;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|5:1:0.5:72:0:0:0:34.75|37.25:0|0:17.86:-0.05:52:-0.82:-10|2;0|25;1|1;5|20:0|24;5|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1619 chr21 19647135 GANGSTR_438446 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19647135;END=19647150;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1620 chr21 19651041 GANGSTR_438447 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19651041;END=19651052;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1621 chr21 19661830 GANGSTR_438448 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=19661830;END=19661841;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1622 chr21 19671888 GANGSTR_438449 GTTGGTTGGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19671888;END=19671899;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1623 chr21 19676579 GANGSTR_438450 TGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19676579;END=19676592;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1624 chr21 19679975 GANGSTR_438451 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19679975;END=19679986;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1625 chr21 19680694 GANGSTR_438452 ACACACACACACACACACACACACACAC ACACACAGACACACACACACACACACAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=19680694;END=19680721;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=53;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:53:0:2:0:26.50|26.50:0|0:11.41:0:.:0:-2|1;0|23:-2|1;0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1626 chr21 19688342 GANGSTR_438455 ATATATATATATATAT ATATATATATATAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=19688342;END=19688357;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=20;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:20:0:0:0:10.00|10.00:0|0:4.68:0:.:0:-2|16:-2|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1627 chr21 19690727 GANGSTR_438456 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19690727;END=19690742;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1628 chr21 19693015 GANGSTR_438457 ACTGAACTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19693015;END=19693024;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:1:24.00|24.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1629 chr21 19697176 GANGSTR_438458 AATTAAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19697176;END=19697185;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1630 chr21 19697390 GANGSTR_438459 CACACACACACACACACA . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=19697390;END=19697407;PERIOD=2;NSKIP=0;NFILT=0;DP=30;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:30:0:1:0:15.00|15.00:0|0:.:0:.:0:-2|1;0|23:-2|1;0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1631 chr21 19700375 GANGSTR_438460 CAACAGCAACAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19700375;END=19700386;PERIOD=6;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1632 chr21 19705868 GANGSTR_438461 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19705868;END=19705879;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1633 chr21 19708977 GANGSTR_438462 TTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=19708977;END=19708986;PERIOD=5;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:0:39.50|39.50:0|0:.:0:.:0:0|63:0|63:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1634 chr21 19709258 GANGSTR_438463 AGAGAGGTAGAGAGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19709258;END=19709273;PERIOD=8;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|35:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1635 chr21 19713374 GANGSTR_438464 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19713374;END=19713388;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1636 chr21 19726419 GANGSTR_438465 ATTTTTAATTTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19726419;END=19726432;PERIOD=7;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:1:34.50|34.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1637 chr21 19733333 GANGSTR_438466 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19733333;END=19733344;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:25.99|33.01:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1638 chr21 19736032 GANGSTR_438467 TGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19736032;END=19736045;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1639 chr21 19739559 GANGSTR_438468 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19739559;END=19739570;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1640 chr21 19744276 GANGSTR_438469 TTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=19744276;END=19744287;PERIOD=4;NSKIP=0;NFILT=0;DP=24;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:24:0:0:2:12.00|12.00:0|0:.:0:.:0:0|14;33|1:0|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1641 chr21 19744416 GANGSTR_438470 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.99;INFRAME_UP=0.06;INFRAME_DOWN=0.18;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=19744416;END=19744455;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2,6;DP=52;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:2|6:1:0.5:52:0:3:0:22.93|29.07:0|0:8.6:-0.77:26:0:0|3;2|8;4|2;6|11:0|1;2|7;4|2;6|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1642 chr21 19745764 GANGSTR_438471 AATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19745764;END=19745772;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1643 chr21 19745900 GANGSTR_438472 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19745900;END=19745911;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1644 chr21 19751154 GANGSTR_438473 TGAATGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19751154;END=19751169;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1645 chr21 19751573 GANGSTR_438474 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19751573;END=19751584;PERIOD=3;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1646 chr21 19752485 GANGSTR_438475 CACACACACACACACACACACACACACACACACACACA CACACACACACACACACACACACACACACACACACACACA . . INFRAME_PGEOM=0.98;INFRAME_UP=0.04;INFRAME_DOWN=0.2;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=19752485;END=19752522;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=60;DSNP=0;DSTUTTER=4;DFLANKINDEL=4;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:60:0:4:4:30.00|30.00:0|0:3.97:0:.:0:-28|9;0|6;2|8:0|3;2|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1647 chr21 19752574 GANGSTR_438476 ACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19752574;END=19752585;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1648 chr21 19755141 GANGSTR_438477 TTGAATTGAATTGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19755141;END=19755155;PERIOD=5;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:0:19.50|19.50:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1649 chr21 19761576 GANGSTR_438478 AAGGAAGGAAGGAAGGAAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19761576;END=19761595;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1650 chr21 19767641 GANGSTR_438479 AGACAGACAGAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19767641;END=19767652;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:1:34.00|34.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1651 chr21 19770878 GANGSTR_438480 TTTCTTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19770878;END=19770887;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1652 chr21 19776802 GANGSTR_438482 ATAGTTATAGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19776802;END=19776813;PERIOD=6;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|42:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1653 chr21 19785041 GANGSTR_438483 CTGCTGCTGCTGCTGCTGCTGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19785041;END=19785064;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1654 chr21 19797226 GANGSTR_438484 TATATTATATTATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=19797226;END=19797240;PERIOD=5;NSKIP=0;NFILT=0;DP=31;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:31:0:0:0:15.50|15.50:0|0:.:0:.:0:0|18:0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1655 chr21 19813599 GANGSTR_438485 AAACAAAACAAAACAAAACAAAACA AAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19813599;END=19813623;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=15;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|15:1:0.5:70:0:0:0:29.14|40.86:0|0:44.17:-1.09:40:-0.13:-18|1;-7|2;-4|1;0|25;15|9:0|13;15|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1656 chr21 19817468 GANGSTR_438487 TATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19817468;END=19817481;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|43:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1657 chr21 19834327 GANGSTR_438489 TGATGATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19834327;END=19834335;PERIOD=3;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1658 chr21 19834869 GANGSTR_438490 TAAAATAAAATAAAATAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19834869;END=19834888;PERIOD=5;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:41.00|32.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1659 chr21 19839719 GANGSTR_438491 ATAATAATAATAATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=19839719;END=19839742;PERIOD=3;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:26.44|16.56:0|0:.:0:.:0:0|19:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1660 chr21 19840235 GANGSTR_438492 TAGTTTTAGTTTTAGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19840235;END=19840252;PERIOD=6;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|26:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1661 chr21 19843521 GANGSTR_438493 ATAACAACAACAAC ACAACAACAACAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19843523;END=19843534;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:56:0:0:0:25.51|30.49:0|0:88.67:-0.23:53:-0.23:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1662 chr21 19846452 GANGSTR_438494 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19846452;END=19846463;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1663 chr21 19851862 GANGSTR_438495 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19851862;END=19851873;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1664 chr21 19853671 GANGSTR_438496 ATTATTATTATT ATTATTATTACT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19853671;END=19853682;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:50:0:0:0:25.00|25.00:0|0:83.25:0:44:-0.64:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1665 chr21 19854913 GANGSTR_438497 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19854913;END=19854924;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1666 chr21 19856854 GANGSTR_438498 ATTCATTCATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19856854;END=19856873;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.51|28.49:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1667 chr21 19858758 GANGSTR_438499 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19858758;END=19858769;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:1:24.50|24.50:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1668 chr21 19860433 GANGSTR_438500 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19860433;END=19860444;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:1:0:25.50|25.50:0|0:.:0:.:0:-4|1;0|34:-4|1;0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1669 chr21 19878287 GANGSTR_438502 TCATTTCATTTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19878287;END=19878301;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1670 chr21 19885165 GANGSTR_438503 AACAACAACAACAACAACAACAACAACAACAAA AACAACAACAACAACAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19885165;END=19885194;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-15;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-15|-15:1:1:63:0:0:0:31.50|31.50:0|0:16.55:0:.:0:-15|44;-10|1:-15|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1671 chr21 19886171 GANGSTR_438504 ATAAATAAATAAATAAATAAATAAATAA ATAAATAAATAAATAAATAAATAA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.09;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=19886171;END=19886198;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:48:0:0:0:24.36|23.64:0|0:5.67:-0:25:-0.37:-4|9;0|12:-4|9;0|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1672 chr21 19888753 GANGSTR_438505 ACACACACACACAC ACACACACACAC . . INFRAME_PGEOM=0.98;INFRAME_UP=0.04;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19888753;END=19888766;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:61:0:0:0:28.10|32.90:0|0:26.85:-0.24:51:-0.78:-3|1;-2|21;0|20:-2|21;0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1673 chr21 19891482 GANGSTR_438506 AACAACAACAACAACAACAAC AACAACAACAACAACAAA . . INFRAME_PGEOM=0.97;INFRAME_UP=0.08;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19891482;END=19891502;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-3:1:0.5:53:0:0:0:31.98|21.02:0|0:87.85:-0.77:53:-0.23:-3|12;0|18:-3|12;0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1674 chr21 19893519 GANGSTR_438507 TGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19893519;END=19893532;PERIOD=2;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|57:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1675 chr21 19894051 GANGSTR_438508 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19894051;END=19894062;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1676 chr21 19903459 GANGSTR_438509 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19903459;END=19903470;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:23.54|17.46:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1677 chr21 19905161 GANGSTR_438511 CCTTCCTTCCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19905161;END=19905172;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1678 chr21 19905944 GANGSTR_438512 AGATAGATAGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19905944;END=19905955;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|43:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1679 chr21 19910348 GANGSTR_438513 ATGATAATGATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19910348;END=19910359;PERIOD=6;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1680 chr21 19910513 GANGSTR_438514 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19910513;END=19910524;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1681 chr21 19915479 GANGSTR_438515 TAGTATAGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19915479;END=19915488;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1682 chr21 19916881 GANGSTR_438516 AAACTAAACTAAACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19916881;END=19916895;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1683 chr21 19921068 GANGSTR_438517 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19921068;END=19921079;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:1:23.50|23.50:0|0:.:0:.:0:0|30:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1684 chr21 19923412 GANGSTR_438518 AAATAAATAAATAAA AAAAAAATAAATAAAT . . INFRAME_PGEOM=0.98;INFRAME_UP=0.02;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.96;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19923412;END=19923423;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=1;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|1:1:0.5:55:0:0:0:30.41|24.59:0|0:169.12:-0.3:54:-0.23:-3|4;0|25;1|17:0|25;1|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1685 chr21 19937151 GANGSTR_438519 AGGAAGGAAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19937151;END=19937162;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1686 chr21 19943313 GANGSTR_438520 CCTTCCTTCCTTCCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19943313;END=19943328;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1687 chr21 19946058 GANGSTR_438521 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.02;START=19946058;END=19946072;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:1:34.50|34.50:0|0:.:0:.:0:0|43;1|1:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1688 chr21 19949282 GANGSTR_438522 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19949282;END=19949297;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1689 chr21 19950240 GANGSTR_438523 CATGCATGCATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19950240;END=19950251;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1690 chr21 19950400 GANGSTR_438524 TTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19950400;END=19950419;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|33:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1691 chr21 19962357 GANGSTR_438525 TTATACATTATACATTATACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19962357;END=19962377;PERIOD=7;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|36:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1692 chr21 19972188 GANGSTR_438526 CTTCCTTCCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19972188;END=19972199;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1693 chr21 19973557 GANGSTR_438527 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19973557;END=19973568;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1694 chr21 19984208 GANGSTR_438528 TAAAATAAAATAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19984208;END=19984222;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1695 chr21 19985513 GANGSTR_438529 ACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.94;INFRAME_UP=0.08;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=19985513;END=19985552;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,2;DP=63;DSNP=0;DSTUTTER=4;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|2:1:0.5:63:0:4:2:35.67|27.33:0|0:5.09:-0.46:28:0:-4|2;-2|12;0|4;2|5:-4|2;-2|11;0|2;2|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1696 chr21 19988801 GANGSTR_438530 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19988801;END=19988815;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1697 chr21 19989081 GANGSTR_438531 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=19989081;END=19989092;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1698 chr21 19992367 GANGSTR_438532 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=19992367;END=19992378;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1699 chr21 19998193 GANGSTR_438533 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=19998193;END=19998204;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1700 chr21 20000125 GANGSTR_438534 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20000125;END=20000139;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1701 chr21 20002468 GANGSTR_438535 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20002468;END=20002487;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1702 chr21 20003248 GANGSTR_438536 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20003248;END=20003259;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1703 chr21 20004170 GANGSTR_438537 TCATTCATTCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20004170;END=20004181;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1704 chr21 20009965 GANGSTR_438538 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20009965;END=20009976;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1705 chr21 20023155 GANGSTR_438539 TACCCACCCACCC TCCCCACCCCCCC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20023156;END=20023167;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=53;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:53:0:1:0:43.86|9.14:0|0:21:-6.39:52:-2.38:0|36:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1706 chr21 20025231 GANGSTR_438540 TCCCCTCCCCTCCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20025231;END=20025245;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:1:22.00|22.00:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1707 chr21 20026634 GANGSTR_438541 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20026634;END=20026649;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1708 chr21 20031983 GANGSTR_438542 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20031983;END=20031998;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1709 chr21 20033299 GANGSTR_438543 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20033299;END=20033310;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1710 chr21 20033593 GANGSTR_438544 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20033593;END=20033604;PERIOD=2;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|55:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1711 chr21 20034069 GANGSTR_438545 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20034069;END=20034084;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1712 chr21 20034155 GANGSTR_438546 TTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20034155;END=20034174;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1713 chr21 20038770 GANGSTR_438547 ATTGATTGATTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20038770;END=20038781;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|49:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1714 chr21 20042091 GANGSTR_438548 TTATTATTATTATTATTATTATTATTATTATTATTATTATTA TTATTATTATTATTATTATTATTATTATTATTATTATTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=20042091;END=20042132;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=27;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-3|-3:1:1:27:0:0:0:13.50|13.50:0|0:3.5:0:.:0:-3|13:-3|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1715 chr21 20045491 GANGSTR_438549 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20045491;END=20045502;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|46:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1716 chr21 20048529 GANGSTR_438550 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20048529;END=20048540;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|42:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1717 chr21 20049135 GANGSTR_438551 TTCTTTCTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20049135;END=20049146;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1718 chr21 20054685 GANGSTR_438552 CAAGCAAGCAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20054685;END=20054696;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1719 chr21 20067848 GANGSTR_438553 CACACACACACACACACACACACACACACACA CACACACACACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACACACACACACA . . INFRAME_PGEOM=0.76;INFRAME_UP=0.18;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=20067848;END=20067879;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=10,14;DP=45;DSNP=0;DSTUTTER=4;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:10|14:0.8:0.4:45:0:4:1:27.83|17.17:0|0:0.61:-1.36:25:-0.75:-20|1;-14|1;-11|2;8|1;10|15;12|3;14|3:8|2;10|13;12|2;14|3:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1720 chr21 20068484 GANGSTR_438554 TTTAATTTAATTTAATTTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20068484;END=20068503;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1721 chr21 20068880 GANGSTR_438555 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20068880;END=20068891;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:36.50|37.50:0|0:.:0:.:0:0|47:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1722 chr21 20070158 GANGSTR_438556 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20070158;END=20070177;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1723 chr21 20079890 GANGSTR_438557 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20079890;END=20079901;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1724 chr21 20088050 GANGSTR_438559 CTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20088050;END=20088061;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|36:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1725 chr21 20088680 GANGSTR_438560 AGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20088680;END=20088691;PERIOD=2;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:2:23.00|23.00:0|0:.:0:.:0:0|32:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1726 chr21 20092855 GANGSTR_438561 CACACACACACACACACA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20092855;END=20092872;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:1:0:35.50|20.50:0|0:.:0:.:0:-2|1;0|38:-2|1;0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1727 chr21 20098624 GANGSTR_438562 TTTAAATTTAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20098624;END=20098635;PERIOD=6;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1728 chr21 20101462 GANGSTR_438563 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20101462;END=20101473;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|36:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1729 chr21 20108716 GANGSTR_438564 GAAAAGAAAAGAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20108716;END=20108730;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:1:32.00|32.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1730 chr21 20133339 GANGSTR_438565 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20133339;END=20133350;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:-6|1;0|47:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1731 chr21 20134269 GANGSTR_438566 ATAATATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20134269;END=20134278;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1732 chr21 20140091 GANGSTR_438567 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20140091;END=20140102;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:31.50|25.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1733 chr21 20142244 GANGSTR_438568 ATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20142244;END=20142257;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:31.06|24.94:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1734 chr21 20152663 GANGSTR_438569 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20152663;END=20152677;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1735 chr21 20156653 GANGSTR_438570 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20156653;END=20156664;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:23.00|28.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1736 chr21 20158308 GANGSTR_438571 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20158308;END=20158319;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1737 chr21 20161810 GANGSTR_438572 ATAATAATAATAATA ATGATAATAATAATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20161810;END=20161824;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:64:0:0:1:33.96|30.04:0|0:93.38:-0.17:54:-0.54:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1738 chr21 20162731 GANGSTR_438573 CACTAAACACACACACACACACACACACACACACACAC CACTAAACACACACACACACACACACAC,CTCTAAACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20162737;END=20162768;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-10,0;DP=56;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-10|0:1:0.5:56:0:1:1:32.99|23.01:0|0:57.92:-0.81:40:0:-10|22;-2|1;0|10:-10|22;-2|1;0|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1739 chr21 20165858 GANGSTR_438574 TTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.96;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.05;START=20165858;END=20165872;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:5:31.00|31.00:0|0:.:0:.:0:-1|1;0|32;1|2:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1740 chr21 20178745 GANGSTR_438575 TAATAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20178745;END=20178759;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|32:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1741 chr21 20185048 GANGSTR_438576 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20185048;END=20185059;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1742 chr21 20186844 GANGSTR_438577 ATTTCATTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20186844;END=20186853;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1743 chr21 20187160 GANGSTR_438578 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20187160;END=20187171;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1744 chr21 20190828 GANGSTR_438579 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20190828;END=20190839;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:31.50|22.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1745 chr21 20200870 GANGSTR_438580 AATTGAATTGAATTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20200870;END=20200884;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1746 chr21 20201169 GANGSTR_438581 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20201169;END=20201180;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|33:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1747 chr21 20201703 GANGSTR_438582 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20201703;END=20201714;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1748 chr21 20201940 GANGSTR_438583 AAATATATATATATATATAT AAATATATATATATAT,ATATATATATATATATATAT . . INFRAME_PGEOM=0.91;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.99;OUTFRAME_UP=0.2;OUTFRAME_DOWN=0.05;START=20201942;END=20201959;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4,0;DP=27;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|0:1:0.5:27:0:0:2:15.99|11.01:0|0:18.08:-0.42:21:-0.18:-4|9;-3|4;0|4:-4|13;0|3:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1749 chr21 20204121 GANGSTR_438584 TTTATTTATTTATTTATTTA TTTATTTATTTATTTATTTATTTA . . INFRAME_PGEOM=0.97;INFRAME_UP=0.05;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20204121;END=20204140;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:80:0:0:0:33.82|46.18:0|0:10.14:-1.23:48:-0.43:-39|1;-15|2;0|18;4|24:0|15;4|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1750 chr21 20218476 GANGSTR_438585 AATTAATTAATTAATTAATT AATTAATTAATTAATTAATTAATT . . INFRAME_PGEOM=0.98;INFRAME_UP=0.08;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=20218476;END=20218495;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:44:0:0:0:20.44|23.56:0|0:3.49:-0.16:25:-1.05:0|10;3|2;4|7:0|9;4|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1751 chr21 20219668 GANGSTR_438586 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20219668;END=20219679;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:19.50|32.50:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1752 chr21 20227913 GANGSTR_438587 AAATAAAATAAAATATACTC AAATAAAATAAAATATACTCTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.91;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20227913;END=20227927;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=2;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:65:0:0:0:28.49|36.51:0|0:138.78:-0.52:46:-0.13:0|15;2|16:0|13;2|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1753 chr21 20236147 GANGSTR_438588 AATATAATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20236147;END=20236156;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1754 chr21 20241366 GANGSTR_438589 AAATAAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20241366;END=20241389;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1755 chr21 20242241 GANGSTR_438590 ATAATCATAATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=20242241;END=20242252;PERIOD=6;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|22:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1756 chr21 20247887 GANGSTR_438592 AGGCAGGCAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20247887;END=20247898;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:22.00|29.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1757 chr21 20250864 GANGSTR_438593 AATGGAATGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20250864;END=20250873;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:1:32.00|32.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1758 chr21 20251696 GANGSTR_438594 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20251696;END=20251707;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:27.49|24.51:0|0:.:0:.:0:0|40:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1759 chr21 20251853 GANGSTR_438595 TGGTGGTGGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20251853;END=20251864;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1760 chr21 20252006 GANGSTR_438596 AAATAAAATAAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20252006;END=20252020;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1761 chr21 20253844 GANGSTR_438597 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20253844;END=20253855;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1762 chr21 20257591 GANGSTR_438598 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.96;INFRAME_UP=0.06;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20257591;END=20257628;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=70;DSNP=0;DSTUTTER=6;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-6:1:0.5:70:0:6:0:33.89|36.11:0|0:60.44:-0.05:46:-0.26:-10|1;-8|1;-6|21;-2|2;0|10;2|1:-10|1;-8|1;-6|19;-2|2;0|10;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1763 chr21 20260047 GANGSTR_438599 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.02;START=20260047;END=20260061;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|50;1|1:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1764 chr21 20260345 GANGSTR_438600 CAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20260345;END=20260354;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1765 chr21 20264407 GANGSTR_438601 ATTGATTGATTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20264407;END=20264418;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:1:20.00|20.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1766 chr21 20265526 GANGSTR_438602 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20265526;END=20265537;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1767 chr21 20266075 GANGSTR_438603 ATAGATAGATAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20266075;END=20266086;PERIOD=4;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:0:38.50|38.50:0|0:.:0:.:0:0|56:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1768 chr21 20266398 GANGSTR_438604 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20266398;END=20266409;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1769 chr21 20269035 GANGSTR_438605 GAAGGAAGGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20269035;END=20269046;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1770 chr21 20269115 GANGSTR_438606 CAACAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20269115;END=20269129;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1771 chr21 20273027 GANGSTR_438607 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20273027;END=20273038;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.00|21.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1772 chr21 20278557 GANGSTR_438608 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20278557;END=20278568;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1773 chr21 20281035 GANGSTR_438609 GTTTTGTTTTGTTTTGTTTTGTTTTGTTTT . . . INFRAME_PGEOM=0.96;INFRAME_UP=0.24;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=20281035;END=20281064;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=15;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:15:0:30.50|30.50:0|0:.:0:.:0:0|18;5|7:0|18;5|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1774 chr21 20281747 GANGSTR_438610 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20281747;END=20281758;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1775 chr21 20287865 GANGSTR_438611 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20287865;END=20287876;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1776 chr21 20291029 GANGSTR_438612 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20291029;END=20291043;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1777 chr21 20293648 GANGSTR_438613 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20293648;END=20293659;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1778 chr21 20295451 GANGSTR_438614 AGATATAGATATAGATATAGATATAGATATAGATAT AGATATAGATATAGATATCGATATAGATATAGATATAGATATAGATAT . . INFRAME_PGEOM=0.91;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=20295451;END=20295486;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=12;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|12:1:0.5:65:0:0:0:20.35|44.65:0|0:11.85:-3.14:48:-0.3:-4|1;-3|5;0|5;2|2;12|14:0|5;12|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1779 chr21 20299671 GANGSTR_438615 GTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20299671;END=20299692;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:62:0:0:0:31.00|31.00:0|0:11.3:0:.:0:-2|37:-2|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1780 chr21 20303339 GANGSTR_438616 TATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=20303339;END=20303347;PERIOD=3;NSKIP=0;NFILT=0;DP=23;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:23:0:0:0:11.50|11.50:0|0:.:0:.:0:0|15:0|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1781 chr21 20308450 GANGSTR_438617 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20308450;END=20308461;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1782 chr21 20310511 GANGSTR_438618 TTAAAATTAAAAAAAA TTAAAATTAAAAAAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20310511;END=20310522;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=8;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:61:0:0:0:29.50|31.50:0|0:93.76:-0.05:52:-0.24:0|35:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1783 chr21 20314046 GANGSTR_438619 GCAAGCAAGCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20314046;END=20314057;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|42:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1784 chr21 20319104 GANGSTR_438620 TATATATATATA TATATATATATATA . . INFRAME_PGEOM=0.93;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20319104;END=20319115;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:65:0:0:0:38.35|26.65:0|0:14.9:-1.15:52:-0.41:-4|2;0|32;2|17:0|30;2|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1785 chr21 20326055 GANGSTR_438621 ATATACACATATACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20326055;END=20326070;PERIOD=8;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|41:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1786 chr21 20326405 GANGSTR_438622 TATCTATATCTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20326405;END=20326416;PERIOD=6;NSKIP=0;NFILT=0;DP=81;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:81:0:0:0:40.50|40.50:0|0:.:0:.:0:0|59:0|61:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1787 chr21 20336346 GANGSTR_438623 AGGGAAAGGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20336346;END=20336357;PERIOD=6;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1788 chr21 20336975 GANGSTR_438624 CACACACACACACACACACACACACACACACACACACA . . . INFRAME_PGEOM=0.89;INFRAME_UP=0.23;INFRAME_DOWN=0.23;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=20336975;END=20337012;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=9;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:9:2:26.00|26.00:0|0:.:0:.:0:-4|1;-2|3;0|10;2|5:-4|1;-2|3;0|9;2|3:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1789 chr21 20337662 GANGSTR_438625 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20337662;END=20337673;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1790 chr21 20341018 GANGSTR_438626 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20341018;END=20341032;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1791 chr21 20344557 GANGSTR_438627 AACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20344557;END=20344565;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|35:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1792 chr21 20346278 GANGSTR_438628 AAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20346278;END=20346285;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1793 chr21 20353526 GANGSTR_438629 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20353526;END=20353537;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1794 chr21 20356980 GANGSTR_438630 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20356980;END=20356991;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1795 chr21 20361094 GANGSTR_438631 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20361094;END=20361105;PERIOD=3;NSKIP=0;NFILT=0;DP=34;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:34:0:0:0:17.00|17.00:0|0:.:0:.:0:0|26:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1796 chr21 20361228 GANGSTR_438632 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20361228;END=20361239;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1797 chr21 20363457 GANGSTR_438633 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20363457;END=20363468;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1798 chr21 20364290 GANGSTR_438634 TTAAATTAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=20364290;END=20364299;PERIOD=5;NSKIP=0;NFILT=0;DP=35;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:0:0:17.50|17.50:0|0:.:0:.:0:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1799 chr21 20366861 GANGSTR_438636 TTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20366861;END=20366880;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1800 chr21 20368006 GANGSTR_438637 AAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20368006;END=20368020;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1801 chr21 20384597 GANGSTR_438638 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20384597;END=20384608;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1802 chr21 20391957 GANGSTR_438639 AGAAAAGAAAAGAAA AGAAAAGAAAATAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20391957;END=20391971;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:57:0:0:0:28.50|28.50:0|0:15.05:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1803 chr21 20392239 GANGSTR_438640 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20392239;END=20392250;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1804 chr21 20392607 GANGSTR_438641 TTAGTTAGTTAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20392607;END=20392618;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|50:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1805 chr21 20394930 GANGSTR_438642 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.76;INFRAME_UP=0.03;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20394930;END=20394963;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-16,2;DP=77;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-16|2:1:0.5:77:0:1:1:38.91|38.09:0|0:31.08:0:51:0:-16|25;-2|1;0|1;2|20:-16|24;-2|1;2|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1806 chr21 20398536 GANGSTR_438643 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20398536;END=20398547;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1807 chr21 20401322 GANGSTR_438644 TGTGTGTGTGTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20401322;END=20401333;PERIOD=2;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:1:0:24.00|24.00:0|0:.:0:.:0:-2|1;0|32:-2|1;0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1808 chr21 20407791 GANGSTR_438646 AGATTCTTTATTTATTTA AAATTCTTTATTTATTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20407797;END=20407808;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:52:0:0:0:23.55|28.45:0|0:66.84:-0.27:43:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1809 chr21 20411315 GANGSTR_438647 TCCACCCTCCACCCTCCACCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20411315;END=20411335;PERIOD=7;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|27:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1810 chr21 20420222 GANGSTR_438648 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20420222;END=20420233;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1811 chr21 20422469 GANGSTR_438649 GAAGGAAGGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20422469;END=20422480;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1812 chr21 20423583 GANGSTR_438650 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20423583;END=20423598;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1813 chr21 20426790 GANGSTR_438651 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20426790;END=20426801;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|51:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1814 chr21 20427344 GANGSTR_438652 GGAGGGGAGGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20427344;END=20427358;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1815 chr21 20431819 GANGSTR_438653 AGATATTTAGATATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20431819;END=20431834;PERIOD=8;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|33:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1816 chr21 20433503 GANGSTR_438654 TTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20433503;END=20433512;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1817 chr21 20434170 GANGSTR_438655 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20434170;END=20434181;PERIOD=4;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:1:20.97|16.03:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1818 chr21 20436354 GANGSTR_438656 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20436354;END=20436365;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|47:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1819 chr21 20436782 GANGSTR_438657 AGAGATAATAATAATA AAAGATAATAATAATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20436786;END=20436797;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:52:0:0:0:29.00|23.00:0|0:84.23:-0.31:52:-0.11:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1820 chr21 20438284 GANGSTR_438658 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20438284;END=20438295;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1821 chr21 20439407 GANGSTR_438659 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=20439407;END=20439418;PERIOD=4;NSKIP=0;NFILT=0;DP=30;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:30:0:0:0:15.00|15.00:0|0:.:0:.:0:0|19:0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1822 chr21 20452876 GANGSTR_438660 AGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20452876;END=20452887;PERIOD=2;NSKIP=0;NFILT=0;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:36:0:0:0:18.00|18.00:0|0:.:0:.:0:0|27:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1823 chr21 20453279 GANGSTR_438661 AAAAGAAGAAAAGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20453279;END=20453294;PERIOD=8;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|30:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1824 chr21 20454807 GANGSTR_438663 TTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20454807;END=20454816;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1825 chr21 20457346 GANGSTR_438664 TTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20457346;END=20457353;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1826 chr21 20460294 GANGSTR_438665 ACATACATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20460294;END=20460305;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|47:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1827 chr21 20471011 GANGSTR_438666 TTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20471011;END=20471018;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1828 chr21 20472938 GANGSTR_438667 TTTGTTTG TTTGGTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20472938;END=20472945;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:71:0:0:0:29.00|42.00:0|0:86:-0.87:65:-0.21:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1829 chr21 20473840 GANGSTR_438668 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20473840;END=20473851;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1830 chr21 20480476 GANGSTR_438669 TTAAAATTAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20480476;END=20480487;PERIOD=6;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|32:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1831 chr21 20482002 GANGSTR_438670 CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCA CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20482002;END=20482049;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-5;DP=82;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-5:1:0.5:82:0:0:0:39.49|42.51:0|0:133.99:-0.11:51:0:-5|11;0|14:-5|10;0|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1832 chr21 20484549 GANGSTR_438671 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20484549;END=20484560;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|41:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1833 chr21 20488119 GANGSTR_438672 ATTCATTCATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20488119;END=20488138;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1834 chr21 20489301 GANGSTR_438673 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20489301;END=20489312;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1835 chr21 20498251 GANGSTR_438674 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20498251;END=20498262;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1836 chr21 20507969 GANGSTR_438675 ATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20507969;END=20507976;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|60:0|58:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1837 chr21 20511746 GANGSTR_438676 ATTTAATTTAATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20511746;END=20511760;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1838 chr21 20512046 GANGSTR_438677 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20512046;END=20512057;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|40:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1839 chr21 20514549 GANGSTR_438678 ACCCCACCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20514549;END=20514558;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.04|27.96:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1840 chr21 20514629 GANGSTR_438679 GCATGCATGCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20514629;END=20514640;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1841 chr21 20516013 GANGSTR_438680 TTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20516013;END=20516032;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1842 chr21 20518887 GANGSTR_438681 TTGTTTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20518887;END=20518902;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1843 chr21 20525534 GANGSTR_438682 ATATATATATATATAC ATATATATATAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20525534;END=20525547;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:39:0:0:0:19.50|19.50:0|0:9.63:0:.:0:-4|28:-4|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1844 chr21 20528399 GANGSTR_438683 TATTGTATTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20528399;END=20528408;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1845 chr21 20531819 GANGSTR_438684 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20531819;END=20531830;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|55:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1846 chr21 20535388 GANGSTR_438685 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20535388;END=20535399;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1847 chr21 20536955 GANGSTR_438686 TCAAATCAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20536955;END=20536964;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1848 chr21 20537833 GANGSTR_438687 ATTAGATTAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20537833;END=20537842;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:2:26.50|26.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1849 chr21 20538278 GANGSTR_438688 TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC TATCTATCTATCTATCTATCTATCTATC,TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=20538278;END=20538329;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-24,-4;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-24|-4:1:0.5:73:0:0:0:29.54|43.46:0|0:14.85:-1.41:40:-0.52:-24|9;-4|11:-24|12;-4|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1850 chr21 20541115 GANGSTR_438689 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=20541115;END=20541126;PERIOD=2;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:1:37.00|37.00:0|0:.:0:.:0:0|63:0|58:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1851 chr21 20546345 GANGSTR_438690 TTTATTTATTTT TTTATTTATTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20546345;END=20546352;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:54:0:0:0:34.01|19.99:0|0:61.6:-1.19:50:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1852 chr21 20552889 GANGSTR_438692 ACAAACAAACAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20552889;END=20552904;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1853 chr21 20557693 GANGSTR_438693 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20557693;END=20557704;PERIOD=3;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1854 chr21 20559213 GANGSTR_438694 ACACACACACACACACACACACACACACACACACACAT ACACACACACACACACACACACACACACACACACAT,ACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.96;INFRAME_UP=0.03;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20559213;END=20559248;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,2;DP=64;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|2:1:0.5:64:0:3:0:26.47|37.53:0|0:17.85:-0.82:49:-0.11:-4|2;-2|16;0|4;2|16:-4|2;-2|16;0|1;2|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1855 chr21 20567681 GANGSTR_438695 AAATATATATATATATATATAAACA AAATATATATATATATATAAACA,ATATATATATATATATATATATATAAACG . . INFRAME_PGEOM=0.75;INFRAME_UP=0.35;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.12;START=20567683;END=20567700;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,4;DP=26;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|4:1:0.5:26:0:0:2:17.50|8.50:0|0:13.95:-0.97:25:-0.4:-3|1;-2|8;0|5;4|1:-2|10;4|2:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1856 chr21 20572868 GANGSTR_438696 GGTGGTGGTGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=20572868;END=20572879;PERIOD=3;NSKIP=0;NFILT=0;DP=20;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:20:0:0:0:10.00|10.00:0|0:.:0:.:0:0|17:0|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1857 chr21 20577161 GANGSTR_438697 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20577161;END=20577176;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1858 chr21 20602880 GANGSTR_438698 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20602880;END=20602891;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1859 chr21 20603428 GANGSTR_438699 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20603428;END=20603439;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|47:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1860 chr21 20606072 GANGSTR_438700 TTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT TTATTTATTTATTTATTTATTTATTTAT,TTATTTATTTATTTATTTATTTATTTATTTAT . . INFRAME_PGEOM=0.98;INFRAME_UP=0.09;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=20606072;END=20606111;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-12,-8;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-12|-8:1:0.5:62:0:0:0:33.01|28.99:0|0:12.4:-0.18:46:-0.12:-12|13;-8|11:-12|13;-8|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1861 chr21 20608299 GANGSTR_438701 AACAGAACAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20608299;END=20608308;PERIOD=5;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1862 chr21 20610520 GANGSTR_438702 AAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20610520;END=20610527;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1863 chr21 20618021 GANGSTR_438703 TTGTTGTTGTTGTTGTTG TTGCTGTTGTTGTTGTTG . . INFRAME_PGEOM=0.94;INFRAME_UP=0.03;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20618021;END=20618038;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=58;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:58:0:2:0:29.72|28.28:0|0:67.32:-0.05:48:-0.25:-3|2;0|28:-3|2;0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1864 chr21 20619926 GANGSTR_438704 TCCCTCCCTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20619926;END=20619937;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1865 chr21 20621130 GANGSTR_438705 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20621130;END=20621141;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1866 chr21 20621427 GANGSTR_438706 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20621427;END=20621441;PERIOD=5;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:0:39.50|39.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1867 chr21 20624051 GANGSTR_438707 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20624051;END=20624070;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1868 chr21 20624962 GANGSTR_438708 TACCTACCTACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20624962;END=20624973;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1869 chr21 20625768 GANGSTR_438709 TATATATATATATATATATA TATATATATATATATA,TATATATATATATATATATATATATATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=20625768;END=20625787;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4,8;DP=36;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|8:1:0.5:36:0:1:0:24.00|12.00:0|0:25.05:-1.64:24:0:-8|1;-4|16;-2|1;8|3;12|1:-4|16;8|3;12|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1870 chr21 20627090 GANGSTR_438710 TTTATATATATATATATATATA TATATATATATATATATATA,TTTATATATATATATATATATATATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=20627092;END=20627111;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,4;DP=31;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 2|1:4|-2:1:0.5:31:0:1:0:10.00|21.00:0|0:13.81:-1.15:31:-0.76:-2|18;2|1;4|5:-2|18;2|1;4|5:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1871 chr21 20629183 GANGSTR_438711 TTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20629183;END=20629192;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1872 chr21 20632818 GANGSTR_438712 CACACACACACACACACACACACACACACACACACACACACACACACA CACACACACACACACACACACACACACACACACACACACACACACACACA,CAACCACACACACACACACACACACACACACACACACACACACACACACACA . . INFRAME_PGEOM=0.98;INFRAME_UP=0.08;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=20632818;END=20632865;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2,4;DP=49;DSNP=0;DSTUTTER=3;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:2|4:1:0.5:49:0:3:2:26.65|22.35:0|0:10.78:-0.28:39:-0.13:-13|2;0|11;2|10;3|1:0|2;2|9;4|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1873 chr21 20639816 GANGSTR_438713 TGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20639816;END=20639841;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-12,-2;DP=55;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-12|-2:1:0.5:55:0:1:0:25.51|29.49:0|0:18.61:-0.19:42:-0.65:-14|1;-12|16;-2|16:-14|1;-12|16;-2|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1874 chr21 20646413 GANGSTR_438714 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20646413;END=20646424;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:30.00|24.00:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1875 chr21 20649108 GANGSTR_438715 AGCAAGCAAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=20649108;END=20649119;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1876 chr21 20655001 GANGSTR_438716 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=20655001;END=20655012;PERIOD=2;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|22:0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1877 chr21 20660641 GANGSTR_438717 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=20660641;END=20660652;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|23:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1878 chr21 20661225 GANGSTR_438718 ATACATACATACATACATACATACATACATACATACATACATACATAC ATACATACATACATACATACATACATACATACATACATACATAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.08;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=20661225;END=20661272;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=83;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|0:-4|0:1:0.5:83:0:0:0:43.38|39.62:0|0:4.55:-0.34:29:0:-4|11;0|11:-4|11;0|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1879 chr21 20661556 GANGSTR_438719 TTCTTCTTCTTCTTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20661556;END=20661573;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|42:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1880 chr21 20665236 GANGSTR_438720 GTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.07;INFRAME_DOWN=0.18;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20665236;END=20665261;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=42;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:42:0:2:1:21.47|20.53:0|0:4.86:-0:29:-0.15:-2|2;0|12;2|10:-2|2;0|12;2|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1881 chr21 20670616 GANGSTR_438721 TAAAATAAAATAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20670616;END=20670630;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1882 chr21 20671276 GANGSTR_438722 ATTACATTAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20671276;END=20671285;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1883 chr21 20680060 GANGSTR_438723 ATGGATGGATGGATGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20680060;END=20680075;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1884 chr21 20680597 GANGSTR_438724 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20680597;END=20680608;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1885 chr21 20681414 GANGSTR_438725 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20681414;END=20681425;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1886 chr21 20691396 GANGSTR_438727 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20691396;END=20691407;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1887 chr21 20699526 GANGSTR_438728 TATTATTATTATTATTATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20699526;END=20699552;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|32:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1888 chr21 20702045 GANGSTR_438729 TTGTTGTTGTTGTTTA TTGTTGTTGTTGTTTAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20702045;END=20702056;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=1;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:1|1:1:1:44:0:0:1:22.00|22.00:0|0:9.02:0:.:0:0|31:1|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1889 chr21 20704035 GANGSTR_438730 TTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20704035;END=20704054;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1890 chr21 20704548 GANGSTR_438731 TTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20704548;END=20704555;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1891 chr21 20705619 GANGSTR_438732 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20705619;END=20705633;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1892 chr21 20714567 GANGSTR_438733 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20714567;END=20714578;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1893 chr21 20722394 GANGSTR_438734 AATAAATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20722394;END=20722409;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1894 chr21 20725483 GANGSTR_438735 CAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20725483;END=20725497;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1895 chr21 20727522 GANGSTR_438736 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20727522;END=20727533;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1896 chr21 20728698 GANGSTR_438737 ATTTCATTTCATTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20728698;END=20728712;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1897 chr21 20730678 GANGSTR_438738 ATTTTTATTTTTATTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20730678;END=20730695;PERIOD=6;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1898 chr21 20731714 GANGSTR_438739 GTGAGTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20731714;END=20731721;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1899 chr21 20739205 GANGSTR_438740 TAGATAGATAGATAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=20739205;END=20739220;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1900 chr21 20746445 GANGSTR_438742 TTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20746445;END=20746452;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1901 chr21 20755451 GANGSTR_438743 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20755451;END=20755462;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1902 chr21 20760984 GANGSTR_438744 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20760984;END=20760995;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1903 chr21 20761499 GANGSTR_438745 CTCCTCCTCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20761499;END=20761510;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|45:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1904 chr21 20767863 GANGSTR_438746 AAGAAAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20767863;END=20767874;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|54:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1905 chr21 20769528 GANGSTR_438747 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20769528;END=20769539;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1906 chr21 20769798 GANGSTR_438748 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20769798;END=20769809;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|50:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1907 chr21 20772160 GANGSTR_438749 TATAATATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20772160;END=20772169;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1908 chr21 20781274 GANGSTR_438750 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.02;START=20781274;END=20781288;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:1:35.50|35.50:0|0:.:0:.:0:0|39;1|1:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1909 chr21 20782405 GANGSTR_438751 TTGTTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20782405;END=20782414;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1910 chr21 20784675 GANGSTR_438752 TTTCTTTCTTTCTTTCTTTC TTTCTTTCTTTCTTTCTTTCTTT,TTTCTTTCTTTCTTTCTTTCTTTT . . INFRAME_PGEOM=0.96;INFRAME_UP=0.03;INFRAME_DOWN=0.23;OUTFRAME_PGEOM=0.9;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.1;START=20784675;END=20784694;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=3,4;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:3|4:1:0.5:47:0:0:3:22.98|24.02:0|0:25.57:-0:29:-0.56:0|6;2|1;3|8;4|9:3|13;4|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1911 chr21 20794225 GANGSTR_438753 AAACTAAACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20794225;END=20794234;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1912 chr21 20802863 GANGSTR_438754 CTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20802863;END=20802874;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1913 chr21 20819071 GANGSTR_438755 TATTTATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20819071;END=20819090;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1914 chr21 20831672 GANGSTR_438756 TTTTAATTTTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20831672;END=20831683;PERIOD=6;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|37:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1915 chr21 20832599 GANGSTR_438757 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20832599;END=20832610;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1916 chr21 20835772 GANGSTR_438758 ATATATATATATATAT AAATATATATATAT,ATATATATATATAT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.16;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20835772;END=20835787;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,-2;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|-2:1:0.5:59:0:0:0:30.56|28.44:0|0:21.99:0:47:0:-3|1;-2|30;0|5:-2|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1917 chr21 20837433 GANGSTR_438759 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20837433;END=20837444;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1918 chr21 20841953 GANGSTR_438760 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20841953;END=20841964;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1919 chr21 20843408 GANGSTR_438761 TGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20843408;END=20843421;PERIOD=2;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:1:23.50|23.50:0|0:.:0:.:0:0|37:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1920 chr21 20848355 GANGSTR_438762 ATACATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=20848355;END=20848362;PERIOD=4;NSKIP=0;NFILT=0;DP=20;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:20:0:0:0:10.00|10.00:0|0:.:0:.:0:0|15:0|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1921 chr21 20853313 GANGSTR_438763 TTTGTTTGTTTGTTTG TTTGTTTGCTTGTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20853313;END=20853328;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:66:0:0:0:30.99|35.01:0|0:77.49:-0.17:50:-0.11:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1922 chr21 20853987 GANGSTR_438764 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20853987;END=20853998;PERIOD=2;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:25.00|23.00:0|0:.:0:.:0:0|37:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1923 chr21 20857415 GANGSTR_438765 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=20857415;END=20857426;PERIOD=3;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:0:0:40.00|40.00:0|0:.:0:.:0:0|62:0|58:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1924 chr21 20860042 GANGSTR_438766 AACAACAACAAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20860042;END=20860053;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:1:0:30.50|30.50:0|0:.:0:.:0:-3|1;0|43:-3|1;0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1925 chr21 20861195 GANGSTR_438767 TTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.94;INFRAME_UP=0.04;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=20861197;END=20861240;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-7,4;DP=57;DSNP=0;DSTUTTER=5;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-7|4:1:0.5:57:0:5:0:22.00|35.00:0|0:32.49:-1.07:49:-0.86:-9|3;-7|8;-4|1;-1|1;0|3;2|1;4|9:-9|3;-7|8;2|1;4|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1926 chr21 20863509 GANGSTR_438768 TCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20863509;END=20863526;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:43:0:0:0:21.50|21.50:0|0:7.38:0:.:0:-2|26:-2|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1927 chr21 20873808 GANGSTR_438769 ACACACACACACACACAC ACACACACACACACAC,ACACACACACACACACAT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.04;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20873808;END=20873825;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|0:1:0.5:63:0:0:0:34.91|28.09:0|0:31.64:-0.43:45:-0.12:-2|24;0|19:-2|26;0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1928 chr21 20874613 GANGSTR_438770 ATACATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20874613;END=20874620;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1929 chr21 20877162 GANGSTR_438771 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.94;INFRAME_UP=0.05;INFRAME_DOWN=0.16;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=20877162;END=20877207;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-26,-2;DP=66;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 2|1:-2|-26:1:0.5:66:0:2:0:33.41|32.59:0|0:9.3:-0.05:56:-0.11:-26|19;-4|2;-2|10:-26|19;-4|2;-2|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1930 chr21 20878779 GANGSTR_438772 TTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20878779;END=20878787;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|56:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1931 chr21 20879689 GANGSTR_438773 TGTTTTGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20879689;END=20879708;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1932 chr21 20891271 GANGSTR_438774 GAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20891271;END=20891296;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=49;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:49:0:3:0:22.86|26.14:0|0:25.11:-0.06:34:-0.29:-6|1;-4|15;-2|2;0|11:-6|1;-4|15;-2|2;0|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1933 chr21 20893481 GANGSTR_438775 TAGCCTAGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20893481;END=20893490;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1934 chr21 20896163 GANGSTR_438776 CAGACAGACAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20896163;END=20896174;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1935 chr21 20898778 GANGSTR_438777 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20898778;END=20898789;PERIOD=3;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1936 chr21 20899115 GANGSTR_438778 TTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20899115;END=20899124;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1937 chr21 20904511 GANGSTR_438779 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20904511;END=20904522;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|46:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1938 chr21 20905766 GANGSTR_438780 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20905766;END=20905785;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1939 chr21 20906280 GANGSTR_438781 ATGTTATGTTATGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20906280;END=20906294;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1940 chr21 20909507 GANGSTR_438783 TGAGTGAGTGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20909507;END=20909518;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1941 chr21 20914747 GANGSTR_438784 TTTCCTTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20914747;END=20914756;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:1:1:28.50|28.50:0|0:.:0:.:0:-9|1;0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1942 chr21 20918319 GANGSTR_438785 TGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20918319;END=20918332;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:1:0:28.00|28.00:0|0:.:0:.:0:0|45:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1943 chr21 20929435 GANGSTR_438786 ATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20929435;END=20929448;PERIOD=2;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1944 chr21 20930504 GANGSTR_438787 TTATTTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20930504;END=20930523;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1945 chr21 20935757 GANGSTR_438788 CTCCTCCTCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20935757;END=20935768;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1946 chr21 20938278 GANGSTR_438789 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20938278;END=20938289;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1947 chr21 20939394 GANGSTR_438790 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20939394;END=20939405;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|36:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1948 chr21 20942000 GANGSTR_438791 TCTTCTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20942000;END=20942008;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1949 chr21 20955365 GANGSTR_438792 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20955365;END=20955376;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|41:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1950 chr21 20956835 GANGSTR_438793 CAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20956835;END=20956849;PERIOD=5;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1951 chr21 20964675 GANGSTR_438794 TTCTTCTTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20964675;END=20964686;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|48:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1952 chr21 20964844 GANGSTR_438795 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20964844;END=20964859;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1953 chr21 20972767 GANGSTR_438796 TTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20972767;END=20972776;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1954 chr21 20975317 GANGSTR_438797 CAACAACAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20975317;END=20975334;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1955 chr21 20981025 GANGSTR_438798 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20981025;END=20981036;PERIOD=2;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|32:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1956 chr21 20983940 GANGSTR_438799 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20983940;END=20983951;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1957 chr21 20996748 GANGSTR_438800 TAAAAATAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=20996748;END=20996759;PERIOD=6;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|30:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1958 chr21 20997461 GANGSTR_438801 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=20997461;END=20997476;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1959 chr21 21000968 GANGSTR_438802 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21000968;END=21000979;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1960 chr21 21004388 GANGSTR_438803 ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=21004388;END=21004427;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|12:0|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1961 chr21 21010322 GANGSTR_438804 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21010322;END=21010333;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1962 chr21 21016916 GANGSTR_438805 TATCTATATCTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=21016916;END=21016927;PERIOD=6;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|20:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1963 chr21 21019938 GANGSTR_438806 CAGTACTCTCAGTACTCTCAGTACTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=21019938;END=21019964;PERIOD=9;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|18:0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1964 chr21 21022112 GANGSTR_438807 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=21022112;END=21022123;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|24:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1965 chr21 21032870 GANGSTR_438808 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21032870;END=21032885;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1966 chr21 21033387 GANGSTR_438809 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21033387;END=21033398;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1967 chr21 21034731 GANGSTR_438810 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21034731;END=21034742;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1968 chr21 21036955 GANGSTR_438811 TCTTTCTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21036955;END=21036966;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1969 chr21 21043105 GANGSTR_438812 TTTAAATTTAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21043105;END=21043116;PERIOD=6;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1970 chr21 21045303 GANGSTR_438813 TTATTATTATTATTATTATTATTA TTATTATTATTATTATTATTATTT,TTATTATTATTATTATTATTTTTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.98;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.05;START=21045303;END=21045326;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0,1;DP=53;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:0|1:1:0.5:53:0:1:0:29.55|23.45:0|0:75.71:-0.35:44:0:-4|2;0|17;1|11;4|1:0|14;1|12;4|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1971 chr21 21049173 GANGSTR_438814 GTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21049173;END=21049180;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1972 chr21 21049392 GANGSTR_438815 TATGTATGTATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21049392;END=21049403;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1973 chr21 21056757 GANGSTR_438816 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21056757;END=21056768;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1974 chr21 21061538 GANGSTR_438817 TGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.99;INFRAME_UP=0.06;INFRAME_DOWN=0.14;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21061538;END=21061559;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=43;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:43:0:2:0:22.23|20.77:0|0:13.13:-0.06:38:-0.13:-2|2;0|14;2|15:-2|2;0|12;2|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1975 chr21 21061783 GANGSTR_438818 ATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21061783;END=21061796;PERIOD=2;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|26:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1976 chr21 21068652 GANGSTR_438819 ATGATGATGATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21068652;END=21068663;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1977 chr21 21075359 GANGSTR_438820 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21075359;END=21075370;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:27.00|25.00:0|0:.:0:.:0:0|33:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1978 chr21 21081798 GANGSTR_438821 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21081798;END=21081809;PERIOD=2;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1979 chr21 21084839 GANGSTR_438822 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21084839;END=21084850;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1980 chr21 21088776 GANGSTR_438823 GTTGGTTGGTTGGTTGGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21088776;END=21088795;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1981 chr21 21091201 GANGSTR_438824 TTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21091201;END=21091208;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1982 chr21 21095864 GANGSTR_438825 ATAATAATAATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21095864;END=21095884;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1983 chr21 21098884 GANGSTR_438826 TGCTGCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21098884;END=21098892;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1984 chr21 21100398 GANGSTR_438827 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21100398;END=21100409;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1985 chr21 21100944 GANGSTR_438828 TTTCTTTCTTTCTTTTC TTTCTTTCTTTCTTTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21100944;END=21100955;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:57:0:0:0:28.50|28.50:0|0:15.93:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1986 chr21 21101151 GANGSTR_438829 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21101151;END=21101162;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|46:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1987 chr21 21104019 GANGSTR_438830 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21104019;END=21104030;PERIOD=2;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:2:37.50|37.50:0|0:.:0:.:0:0|53:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1988 chr21 21109622 GANGSTR_438831 ATCATCATCATCATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=21109622;END=21109636;PERIOD=3;NSKIP=0;NFILT=0;DP=35;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:0:0:17.50|17.50:0|0:.:0:.:0:0|20:0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1989 chr21 21109692 GANGSTR_438832 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.85;INFRAME_UP=0.06;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21109692;END=21109731;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6,4;DP=75;DSNP=0;DSTUTTER=6;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-6|4:1:0.5:75:0:6:1:43.48|31.52:0|0:18.58:-1.02:44:-1.25:-18|1;-6|25;-1|1;0|2;1|1;2|4;3|1;4|4;6|1:-6|25;2|3;4|5;6|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1990 chr21 21109783 GANGSTR_438833 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21109783;END=21109794;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|52:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1991 chr21 21113564 GANGSTR_438834 ACAACAACAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21113564;END=21113575;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|36:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1992 chr21 21117618 GANGSTR_438835 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21117618;END=21117629;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|44:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1993 chr21 21121842 GANGSTR_438836 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21121842;END=21121853;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1994 chr21 21124128 GANGSTR_438837 ATAAAATAAA ATCAAATAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21124128;END=21124137;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:55:0:0:0:27.50|27.50:0|0:15.35:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1995 chr21 21128105 GANGSTR_438838 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21128105;END=21128120;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|27:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1996 chr21 21136373 GANGSTR_438839 TTATATTATATTATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=21136373;END=21136387;PERIOD=5;NSKIP=0;NFILT=0;DP=29;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:29:0:0:0:14.50|14.50:0|0:.:0:.:0:0|15:0|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1997 chr21 21139837 GANGSTR_438840 TTTTATTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21139837;END=21139856;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1998 chr21 21141514 GANGSTR_438841 TTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=21141514;END=21141528;PERIOD=5;NSKIP=0;NFILT=0;DP=35;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:0:0:17.50|17.50:0|0:.:0:.:0:0|22:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
1999 chr21 21144779 GANGSTR_438842 AAACAAACAAACAAACAAACAAAC AAACAAACAAACAAACAAACAAACAAAC . . INFRAME_PGEOM=0.93;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21144779;END=21144802;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:75:0:0:1:40.93|34.07:0|0:13.57:-0.65:43:-0.12:-24|2;0|28;4|12:0|25;4|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2000 chr21 21146732 GANGSTR_438843 AATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21146732;END=21146740;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2001 chr21 21147414 GANGSTR_438844 CACACACACACACACACACACACACACACACACACACA CACACACACACACACACACACACACACACACACACACACACACATA . . INFRAME_PGEOM=0.94;INFRAME_UP=0.03;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21147414;END=21147451;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=8;DP=72;DSNP=0;DSTUTTER=4;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:8|8:1:1:72:0:4:1:36.00|36.00:0|0:17.17:0:.:0:0|8;2|1;4|2;6|3;8|25:6|2;8|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2002 chr21 21149450 GANGSTR_438845 GTTTTTGTTTTTGTTTTTGTTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21149450;END=21149473;PERIOD=6;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|29:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2003 chr21 21161245 GANGSTR_438846 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21161245;END=21161256;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2004 chr21 21166446 GANGSTR_438847 AATTTAATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21166446;END=21166455;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2005 chr21 21171633 GANGSTR_438848 TTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21171633;END=21171640;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2006 chr21 21175661 GANGSTR_438849 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21175661;END=21175672;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2007 chr21 21175908 GANGSTR_438850 ATAAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21175908;END=21175917;PERIOD=5;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2008 chr21 21180426 GANGSTR_438852 ATAAATAAATAA ATATAGTAATAAATAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=21180426;END=21180437;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=21;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:21:0:0:0:10.50|10.50:0|0:6.02:0:.:0:-15|2;4|17:4|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2009 chr21 21185195 GANGSTR_438854 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21185195;END=21185206;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2010 chr21 21191994 GANGSTR_438855 TATATATATATATATATA . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=21191994;END=21192011;PERIOD=2;NSKIP=0;NFILT=0;DP=34;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:34:0:1:0:17.00|17.00:0|0:.:0:.:0:-2|1;0|22:-2|1;0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2011 chr21 21198135 GANGSTR_438857 AAAACAACAACAACAAC ACAACAACAACAACAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21198137;END=21198151;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:62:0:0:0:31.00|31.00:0|0:15.01:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2012 chr21 21202037 GANGSTR_438858 GAAGAGAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21202037;END=21202046;PERIOD=5;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2013 chr21 21204993 GANGSTR_438859 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21204993;END=21205004;PERIOD=2;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2014 chr21 21211030 GANGSTR_438860 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21211030;END=21211041;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:1:35.00|35.00:0|0:.:0:.:0:0|51:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2015 chr21 21213798 GANGSTR_438861 ATGAATGAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21213798;END=21213809;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:1:25.50|25.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2016 chr21 21222264 GANGSTR_438862 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21222264;END=21222275;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2017 chr21 21225327 GANGSTR_438863 TTGATTGATTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21225327;END=21225338;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2018 chr21 21231651 GANGSTR_438864 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21231651;END=21231662;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|47:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2019 chr21 21233038 GANGSTR_438865 TGTGTGTGTGTGTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21233038;END=21233051;PERIOD=2;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:1:0:36.50|36.50:0|0:.:0:.:0:-2|1;0|58:-2|1;0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2020 chr21 21233733 GANGSTR_438866 CTTCCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21233733;END=21233740;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2021 chr21 21236132 GANGSTR_438867 CTCCTCCTCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21236132;END=21236143;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2022 chr21 21239940 GANGSTR_438868 ATATATATATATAT ATATATATATAT . . INFRAME_PGEOM=0.99;INFRAME_UP=0.09;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21239940;END=21239953;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=57;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:57:0:1:0:28.50|28.50:0|0:13.6:0:.:0:-4|1;-2|40;0|3:-4|1;-2|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2023 chr21 21244746 GANGSTR_438869 CAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21244746;END=21244760;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2024 chr21 21245062 GANGSTR_438870 AATAAATAAATAAATAAATAAATAAATAAATA AATAAATAAATAAATAAATAAATAAATA,AATAAATAAATAAATAAATAAATAAATC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21245062;END=21245093;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4,-4;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|-4:1:0.5:63:0:0:0:36.95|26.05:0|0:28.19:-0.84:47:0:-4|32:-4|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2025 chr21 21248363 GANGSTR_438871 ATAAAATAAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21248363;END=21248377;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2026 chr21 21252890 GANGSTR_438872 CTATCTATCTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21252890;END=21252901;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2027 chr21 21262552 GANGSTR_438873 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=21262552;END=21262563;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:1:1:33.50|33.50:0|0:.:0:.:0:-1|1;0|41:-4|1;0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2028 chr21 21263163 GANGSTR_438874 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21263163;END=21263178;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2029 chr21 21264056 GANGSTR_438875 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21264056;END=21264067;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2030 chr21 21270950 GANGSTR_438876 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21270950;END=21270961;PERIOD=2;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:1:0:20.00|20.00:0|0:.:0:.:0:-2|1;0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2031 chr21 21273600 GANGSTR_438877 TTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21273600;END=21273608;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:2:30.00|30.00:0|0:.:0:.:0:-12|1;0|47;8|1:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2032 chr21 21278172 GANGSTR_438878 TATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21278172;END=21278185;PERIOD=2;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|35:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2033 chr21 21285008 GANGSTR_438879 ACAAACAAACAAACAAACAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21285008;END=21285031;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2034 chr21 21294912 GANGSTR_438880 AAAGGAAAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21294912;END=21294921;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2035 chr21 21303331 GANGSTR_438881 TGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21303331;END=21303348;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2036 chr21 21304927 GANGSTR_438882 AGGGTGAGGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21304927;END=21304938;PERIOD=6;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|33:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2037 chr21 21305377 GANGSTR_438883 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21305377;END=21305388;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2038 chr21 21307160 GANGSTR_438884 ACATACATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21307160;END=21307171;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2039 chr21 21308474 GANGSTR_438885 CATTTCATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21308474;END=21308483;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2040 chr21 21311295 GANGSTR_438886 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21311295;END=21311309;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2041 chr21 21314353 GANGSTR_438887 TCATTCATTCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21314353;END=21314364;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2042 chr21 21319077 GANGSTR_438888 TTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21319077;END=21319096;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2043 chr21 21321240 GANGSTR_438889 TGTGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21321240;END=21321261;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|27:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2044 chr21 21322085 GANGSTR_438890 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21322085;END=21322096;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2045 chr21 21328824 GANGSTR_438891 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21328824;END=21328835;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2046 chr21 21329877 GANGSTR_438892 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21329877;END=21329891;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2047 chr21 21330996 GANGSTR_438893 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21330996;END=21331007;PERIOD=3;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2048 chr21 21334077 GANGSTR_438894 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21334077;END=21334088;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2049 chr21 21336598 GANGSTR_438896 TTCTTTCTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21336598;END=21336609;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2050 chr21 21338773 GANGSTR_438897 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21338773;END=21338784;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2051 chr21 21349268 GANGSTR_438899 TTATTTTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21349268;END=21349282;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2052 chr21 21353996 GANGSTR_438900 TTTATTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21353996;END=21354019;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2053 chr21 21356706 GANGSTR_438901 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21356706;END=21356721;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:1:25.50|25.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2054 chr21 21359416 GANGSTR_438902 TTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21359416;END=21359424;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2055 chr21 21367066 GANGSTR_438903 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.06;START=21367066;END=21367077;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:1:1:24.50|24.50:0|0:.:0:.:0:-1|1;0|30:-8|1;0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2056 chr21 21367739 GANGSTR_438904 CAGAACAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21367739;END=21367748;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2057 chr21 21369147 GANGSTR_438905 ACATGACATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21369147;END=21369156;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2058 chr21 21371534 GANGSTR_438906 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21371534;END=21371545;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:2:24.50|24.50:0|0:.:0:.:0:0|36:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2059 chr21 21371633 GANGSTR_438907 CAAAACCAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21371633;END=21371644;PERIOD=6;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|39:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2060 chr21 21372278 GANGSTR_438908 CAGAACAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21372278;END=21372287;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2061 chr21 21374688 GANGSTR_438909 TTTGTTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21374688;END=21374711;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:2:31.00|31.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2062 chr21 21384565 GANGSTR_438910 ATAATAATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21384565;END=21384582;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|30:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2063 chr21 21389936 GANGSTR_438911 AGATAGATAGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21389936;END=21389947;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:1:0:23.00|23.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2064 chr21 21392892 GANGSTR_438912 TTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21392892;END=21392906;PERIOD=3;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|25:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2065 chr21 21395363 GANGSTR_438913 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21395363;END=21395374;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2066 chr21 21398387 GANGSTR_438914 GAGAGAGAGAGAGA . . . INFRAME_PGEOM=1;INFRAME_UP=0.06;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21398387;END=21398400;PERIOD=2;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:1:0:19.50|19.50:0|0:.:0:.:0:0|30;2|1:0|26;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2067 chr21 21405618 GANGSTR_438915 AATAAAATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21405618;END=21405632;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2068 chr21 21414727 GANGSTR_438916 TTGATTGATTGATTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21414727;END=21414742;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2069 chr21 21420230 GANGSTR_438917 ACAACAACAACAACAACAACA . . . INFRAME_PGEOM=0.73;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21420230;END=21420250;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:1:0:27.00|27.00:0|0:.:0:.:0:-6|1;0|36:-6|1;0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2070 chr21 21427203 GANGSTR_438918 AACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21427203;END=21427217;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:2:26.50|26.50:0|0:.:0:.:0:0|38:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2071 chr21 21428516 GANGSTR_438919 TTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTG TTTGTTTGTTTGTTTGTTTGTTTGTTTG . . INFRAME_PGEOM=1;INFRAME_UP=0.07;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21428516;END=21428547;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=62;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:62:0:1:0:31.00|31.00:0|0:7.08:0:.:0:-4|27;0|1:-4|26;0|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2072 chr21 21431299 GANGSTR_438920 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21431299;END=21431313;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2073 chr21 21442416 GANGSTR_438921 AACAAACAAACAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21442416;END=21442431;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2074 chr21 21447993 GANGSTR_438922 GTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.94;INFRAME_UP=0.03;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21447993;END=21448018;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=54;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:54:0:2:0:27.00|27.00:0|0:7.41:0:.:0:-14|2;-1|1;0|2;2|28:0|2;2|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2075 chr21 21448728 GANGSTR_438923 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21448728;END=21448742;PERIOD=5;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2076 chr21 21455428 GANGSTR_438924 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.99;INFRAME_UP=0.05;INFRAME_DOWN=0.15;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21455428;END=21455459;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=57;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:57:0:1:0:30.43|26.57:0|0:5.8:-0.73:28:0:-2|1;0|17;2|9:-2|1;0|14;2|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2077 chr21 21459320 GANGSTR_438925 TTGTGTTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21459320;END=21459329;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2078 chr21 21463155 GANGSTR_438926 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21463155;END=21463166;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|43:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2079 chr21 21463778 GANGSTR_438927 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21463778;END=21463789;PERIOD=2;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|34:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2080 chr21 21465083 GANGSTR_438928 TGTTGTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21465083;END=21465091;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2081 chr21 21479586 GANGSTR_438929 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21479586;END=21479597;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2082 chr21 21481004 GANGSTR_438930 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21481004;END=21481015;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2083 chr21 21485223 GANGSTR_438931 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21485223;END=21485234;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2084 chr21 21487945 GANGSTR_438932 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21487945;END=21487956;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2085 chr21 21493882 GANGSTR_438933 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21493882;END=21493893;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2086 chr21 21501208 GANGSTR_438934 ATAATAATAATAATAATAATAATAATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=21501208;END=21501243;PERIOD=3;NSKIP=0;NFILT=0;DP=30;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:30:0:0:0:15.00|15.00:0|0:.:0:.:0:0|11:0|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2087 chr21 21501766 GANGSTR_438935 TTCTTCTTCTTC TTCTTCTTC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21501766;END=21501777;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-3|-3:1:1:51:0:0:0:25.50|25.50:0|0:10.67:0:.:0:-3|34:-3|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2088 chr21 21502247 GANGSTR_438936 TTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21502247;END=21502256;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2089 chr21 21504015 GANGSTR_438937 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21504015;END=21504026;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2090 chr21 21513145 GANGSTR_438939 ATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=21513145;END=21513153;PERIOD=3;NSKIP=0;NFILT=0;DP=33;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:33:0:0:0:16.50|16.50:0|0:.:0:.:0:0|18:0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2091 chr21 21514261 GANGSTR_438940 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21514261;END=21514272;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2092 chr21 21514952 GANGSTR_438941 TTATTATTATTATTATTATTATTATTATTATTA TTATTATTATTATTATTATTATTATTATTATTATTA . . INFRAME_PGEOM=1;INFRAME_UP=0.11;INFRAME_DOWN=0.23;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=21514952;END=21514984;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=3;DP=24;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:3|3:1:1:24:0:3:0:15.50|8.50:0|0:6.66:0:.:0:0|3;3|9;6|2:3|9;6|2:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2093 chr21 21517250 GANGSTR_438942 TATATATATATATATA TCTCTATATATATATATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21517250;END=21517265;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:66:0:0:0:33.00|33.00:0|0:17.41:0:.:0:0|49:2|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2094 chr21 21519424 GANGSTR_438943 AATAAATAAATAAATAAATAAATAAATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=21519424;END=21519459;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|16:0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2095 chr21 21527655 GANGSTR_438944 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21527655;END=21527666;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2096 chr21 21528760 GANGSTR_438945 AGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21528760;END=21528767;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|55:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2097 chr21 21531429 GANGSTR_438946 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21531429;END=21531440;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2098 chr21 21534807 GANGSTR_438947 TGTGCATGTGCATGTGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21534807;END=21534824;PERIOD=6;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|37:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2099 chr21 21535090 GANGSTR_438948 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21535090;END=21535101;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|27:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2100 chr21 21538323 GANGSTR_438949 CATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21538323;END=21538334;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:-2|1;0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2101 chr21 21547072 GANGSTR_438950 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21547072;END=21547083;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2102 chr21 21548625 GANGSTR_438951 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21548625;END=21548640;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2103 chr21 21553336 GANGSTR_438952 TTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21553336;END=21553343;PERIOD=4;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2104 chr21 21555408 GANGSTR_438953 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21555408;END=21555419;PERIOD=3;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2105 chr21 21555712 GANGSTR_438954 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21555712;END=21555723;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2106 chr21 21558037 GANGSTR_438955 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21558037;END=21558048;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|47:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2107 chr21 21558425 GANGSTR_438956 GTATGTATGTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21558425;END=21558436;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2108 chr21 21565766 GANGSTR_438957 TTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21565766;END=21565774;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2109 chr21 21570701 GANGSTR_438958 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21570701;END=21570712;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2110 chr21 21582411 GANGSTR_438959 CAAACAAACAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21582411;END=21582434;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=7;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:7:31.00|31.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2111 chr21 21583321 GANGSTR_438960 ACAAACAAACAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21583321;END=21583336;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|35:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2112 chr21 21591422 GANGSTR_438961 AGACTTTAGACTTTAGACTTT AGACTTTAGACTTTAGACTTTAGACTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=21591422;END=21591442;PERIOD=7;NSKIP=0;NFILT=0;BPDIFFS=7;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:7|7:1:1:63:0:0:0:31.50|31.50:0|0:12.27:0:.:0:-23|5;-21|4;-8|1;7|27:7|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2113 chr21 21593510 GANGSTR_438962 CTATCTATCTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21593510;END=21593521;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2114 chr21 21596127 GANGSTR_438963 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21596127;END=21596138;PERIOD=2;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2115 chr21 21602807 GANGSTR_438965 ACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.93;INFRAME_UP=0.14;INFRAME_DOWN=0.15;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=21602807;END=21602850;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,4;DP=70;DSNP=0;DSTUTTER=8;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|4:1:0.5:70:0:8:1:34.62|35.38:0|0:9.47:-0.13:35:-1.44:-14|1;-8|1;-6|1;-4|2;-2|11;0|3;2|3;4|7:-6|1;-4|1;-2|9;0|1;2|3;4|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2116 chr21 21603710 GANGSTR_438966 TTGTTGTTGTTGTTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21603710;END=21603724;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:1:0:29.50|29.50:0|0:.:0:.:0:-3|1;0|33:-3|1;0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2117 chr21 21606507 GANGSTR_438967 TTTATTTATTTATTTA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21606507;END=21606522;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:1:0:34.00|34.00:0|0:.:0:.:0:-4|1;0|46:-4|1;0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2118 chr21 21611886 GANGSTR_438968 AAATAAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21611886;END=21611909;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2119 chr21 21615428 GANGSTR_438969 ATATCATATCATATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21615428;END=21615442;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2120 chr21 21617822 GANGSTR_438970 GTGGTGGTGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=21617822;END=21617833;PERIOD=3;NSKIP=0;NFILT=0;DP=82;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:82:0:0:0:41.00|41.00:0|0:.:0:.:0:0|66:0|63:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2121 chr21 21621094 GANGSTR_438971 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21621094;END=21621105;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2122 chr21 21623153 GANGSTR_438972 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21623153;END=21623164;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2123 chr21 21626985 GANGSTR_438973 ATATATATATAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21626985;END=21626996;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:1:0:22.00|31.00:0|0:.:0:.:0:-2|1;0|41:-2|1;0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2124 chr21 21628384 GANGSTR_438974 ACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.47;INFRAME_UP=0.32;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=21628384;END=21628427;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-8,4;DP=58;DSNP=0;DSTUTTER=4;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-8|4:1:0.5:58:0:4:1:27.89|30.11:0|0:6.68:-0.24:28:-0.4:-8|7;0|6;2|1;4|8:-8|7;0|1;2|2;4|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2125 chr21 21634953 GANGSTR_438975 TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=21634953;END=21634997;PERIOD=3;NSKIP=0;NFILT=0;DP=31;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:31:0:0:0:15.50|15.50:0|0:.:0:.:0:0|10:0|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2126 chr21 21636620 GANGSTR_438976 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21636620;END=21636631;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2127 chr21 21636853 GANGSTR_438977 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21636853;END=21636867;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2128 chr21 21643934 GANGSTR_438978 ATAAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21643934;END=21643943;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2129 chr21 21650183 GANGSTR_438979 AATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21650183;END=21650197;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2130 chr21 21652129 GANGSTR_438980 ATATCTATATCTATATCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21652129;END=21652146;PERIOD=6;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|42:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2131 chr21 21653116 GANGSTR_438981 TATATATATATATATA . . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=21653116;END=21653131;PERIOD=2;NSKIP=0;NFILT=0;DP=28;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:28:0:2:0:14.00|14.00:0|0:.:0:.:0:-2|1;0|17;2|1:-2|1;0|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2132 chr21 21665523 GANGSTR_438985 ACACACACACACACACACACACACC ACACACACACACACACACACACACACACACACA . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=21665523;END=21665546;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=8;DP=49;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|0:8|0:1:0.5:49:0:1:0:22.50|26.50:0|0:152.06:-0.2:40:-0.94:-14|1;0|14;1|1;3|1;6|1;8|10:0|12;6|1;8|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2133 chr21 21682183 GANGSTR_438987 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21682183;END=21682194;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2134 chr21 21701286 GANGSTR_438989 TGTATGTATGTATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21701286;END=21701301;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2135 chr21 21712054 GANGSTR_438991 TATATGTATATGTATATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21712054;END=21712071;PERIOD=6;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2136 chr21 21718099 GANGSTR_438993 ACACACACACACACACACACACACACAC ACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.81;INFRAME_UP=0.09;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=21718099;END=21718126;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,10;DP=55;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 2|1:10|-2:1:0.5:55:0:3:0:27.01|27.99:0|0:11.43:-0:29:-0.58:-4|2;-2|11;0|7;6|1;10|6:-4|1;-2|11;6|1;10|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2137 chr21 21726296 GANGSTR_438994 CAATTCAATTCAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21726296;END=21726310;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2138 chr21 21728176 GANGSTR_438995 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=21728176;END=21728187;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|24:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2139 chr21 21732089 GANGSTR_438996 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=21732089;END=21732100;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:1:1:24.50|24.50:0|0:.:0:.:0:-1|1;0|38:-8|1;0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2140 chr21 21735651 GANGSTR_438997 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21735651;END=21735662;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|44:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2141 chr21 21738849 GANGSTR_438998 CCTTTCCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21738849;END=21738858;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2142 chr21 21742598 GANGSTR_438999 ATACATACATAC ATACATACATAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21742598;END=21742609;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:70:0:0:0:35.00|35.00:0|0:18.96:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2143 chr21 21744236 GANGSTR_439000 AAGGAGAAGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21744236;END=21744247;PERIOD=6;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|39:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2144 chr21 21746364 GANGSTR_439001 TGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.94;INFRAME_UP=0.03;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21746364;END=21746385;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=56;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:56:0:2:0:28.00|28.00:0|0:7.12:0:.:0:0|2;2|29:0|2;2|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2145 chr21 21748657 GANGSTR_439002 AACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21748657;END=21748665;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|54:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2146 chr21 21751250 GANGSTR_439003 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21751250;END=21751261;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2147 chr21 21753450 GANGSTR_439004 AAATAAATAAATAAATAAATAAATAAATAAATAAAT AAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=21753450;END=21753485;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:39:0:0:0:19.50|19.50:0|0:4.53:0:.:0:0|2;4|10:4|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2148 chr21 21755684 GANGSTR_439005 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21755684;END=21755695;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|47:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2149 chr21 21757271 GANGSTR_439006 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21757271;END=21757286;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2150 chr21 21759225 GANGSTR_439007 TATATATATATA . . . INFRAME_PGEOM=1;INFRAME_UP=0.06;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=21759225;END=21759236;PERIOD=2;NSKIP=0;NFILT=0;DP=14;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:14:0:1:0:7.00|7.00:0|0:.:0:.:0:-2|1;0|11:-2|1;0|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2151 chr21 21759534 GANGSTR_439008 ACACACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21759534;END=21759551;PERIOD=2;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:-2|1;0|29:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2152 chr21 21761693 GANGSTR_439009 GTTTTGTTTTGTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21761693;END=21761707;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2153 chr21 21765315 GANGSTR_439010 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21765315;END=21765326;PERIOD=3;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2154 chr21 21766220 GANGSTR_439011 ATTTTCATTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21766220;END=21766231;PERIOD=6;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2155 chr21 21768576 GANGSTR_439012 TAATTTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21768576;END=21768585;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2156 chr21 21770157 GANGSTR_439013 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21770157;END=21770168;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|41:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2157 chr21 21770802 GANGSTR_439014 ATATTAAATATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21770802;END=21770815;PERIOD=7;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|41:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2158 chr21 21770947 GANGSTR_439015 ATATATATATATATATAT ATATATATATATATATATAT . . INFRAME_PGEOM=0.99;INFRAME_UP=0.04;INFRAME_DOWN=0.14;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=21770947;END=21770964;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=37;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:37:0:1:0:18.50|18.50:0|0:6.57:0:.:0:-31|1;0|4;2|21:0|1;2|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2159 chr21 21780363 GANGSTR_439016 TTTTGTTTTGTTTTG TTTTGTTTTGTTTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21780363;END=21780377;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:66:0:0:0:33.00|33.00:0|0:94.23:0:54:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2160 chr21 21780625 GANGSTR_439017 TGTATGTGTATGTGTATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21780625;END=21780642;PERIOD=6;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|35:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2161 chr21 21783948 GANGSTR_439018 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21783948;END=21783959;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2162 chr21 21785988 GANGSTR_439019 TTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21785988;END=21785997;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2163 chr21 21786267 GANGSTR_439020 CTAATGCTAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21786267;END=21786278;PERIOD=6;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:1:0:22.00|22.00:0|0:.:0:.:0:0|35:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2164 chr21 21791032 GANGSTR_439021 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21791032;END=21791043;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2165 chr21 21794092 GANGSTR_439022 TTCATTTCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21794092;END=21794101;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2166 chr21 21795690 GANGSTR_439023 TTCATTTCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21795690;END=21795699;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2167 chr21 21797118 GANGSTR_439024 AATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21797118;END=21797127;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2168 chr21 21803307 GANGSTR_439025 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21803307;END=21803318;PERIOD=2;NSKIP=0;NFILT=0;DP=28;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:28:0:0:0:14.00|14.00:0|0:.:0:.:0:0|26:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2169 chr21 21813925 GANGSTR_439027 TTAGTTAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21813925;END=21813932;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2170 chr21 21814618 GANGSTR_439028 AAGGAAGGAAGG AAGGAAAGAAGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21814618;END=21814629;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:60:0:0:0:33.00|27.00:0|0:80.42:-0.3:54:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2171 chr21 21818066 GANGSTR_439029 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=1;INFRAME_UP=0.15;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21818066;END=21818103;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=60;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:60:0:1:1:31.67|28.33:0|0:5.45:-0.55:31:-0.15:-8|1;-2|12;0|16;2|1:-2|11;0|15;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2172 chr21 21820145 GANGSTR_439030 ATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21820145;END=21820154;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2173 chr21 21821466 GANGSTR_439031 ACATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21821466;END=21821473;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2174 chr21 21821852 GANGSTR_439032 ATATATATATATATATATATAT ATATATATATATATATATAT . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=21821852;END=21821873;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=37;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:37:0:1:0:18.50|18.50:0|0:6.33:0:.:0:-4|1;-2|23:-4|1;-2|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2175 chr21 21829669 GANGSTR_439033 TAGATAGATAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21829669;END=21829680;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|47:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2176 chr21 21830168 GANGSTR_439034 TTCATTTTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21830168;END=21830179;PERIOD=6;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|37:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2177 chr21 21832665 GANGSTR_439035 CCTGCCTGCCTGAG CCTGCCTGCCTGAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21832665;END=21832676;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:49:0:0:0:24.50|24.50:0|0:12.59:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2178 chr21 21833780 GANGSTR_439036 AAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21833780;END=21833794;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2179 chr21 21833959 GANGSTR_439037 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21833959;END=21833970;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2180 chr21 21834883 GANGSTR_439038 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=21834883;END=21834894;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:1:1:22.00|22.00:0|0:.:0:.:0:-17|1;0|21:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2181 chr21 21835210 GANGSTR_439039 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21835210;END=21835221;PERIOD=2;NSKIP=0;NFILT=0;DP=34;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:34:0:0:0:19.00|15.00:0|0:.:0:.:0:0|28:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2182 chr21 21837916 GANGSTR_439040 ATATATATATATATATATATATAT ATATATATATATATATAT . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21837916;END=21837939;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=53;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-6|-6:1:1:53:0:3:0:26.50|26.50:0|0:12.94:0:.:0:-8|1;-6|40;-4|1:-8|1;-6|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2183 chr21 21845949 GANGSTR_439041 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21845949;END=21845960;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2184 chr21 21849068 GANGSTR_439042 TTATTATTATTATTATTA TTATTATTATTATTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21849068;END=21849085;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-3|-3:1:1:53:0:0:0:26.50|26.50:0|0:10.36:0:.:0:-3|33:-3|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2185 chr21 21854343 GANGSTR_439043 TCTGTGTGTGTGTGTGTGTG TCTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.93;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21854345;END=21854362;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6,12;DP=52;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:6|12:1:0.5:52:0:2:0:24.99|27.01:0|0:63.17:-0.05:46:-0.85:-3|1;0|3;6|17;8|1;10|2;12|16:6|16;8|1;10|1;12|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2186 chr21 21857697 GANGSTR_439044 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21857697;END=21857708;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2187 chr21 21861496 GANGSTR_439045 ATATATATATATATAT ATATATATATATAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21861496;END=21861511;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:51:0:0:0:25.50|25.50:0|0:8.55:0:.:0:-2|28:-2|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2188 chr21 21861653 GANGSTR_439046 GTTGTTGTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21861653;END=21861664;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2189 chr21 21863926 GANGSTR_439047 GTGTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21863926;END=21863939;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:27.50|32.50:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2190 chr21 21864425 GANGSTR_439048 TTTGGTTTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21864425;END=21864434;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2191 chr21 21865058 GANGSTR_439049 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21865058;END=21865069;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:22.50|17.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2192 chr21 21869427 GANGSTR_439050 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21869427;END=21869438;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|51:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2193 chr21 21876008 GANGSTR_439051 ACGAATTTATTTATTT ACGAATTTATCTATTT,ATGAATTTATCTATTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21876012;END=21876023;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0,0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:0|0:1:0.5:49:0:0:0:23.00|26.00:0|0:66.67:-0.12:45:-0.27:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2194 chr21 21877547 GANGSTR_439052 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21877547;END=21877558;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:33.50|28.50:0|0:.:0:.:0:0|51:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2195 chr21 21880026 GANGSTR_439053 CAGGCAGGCAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21880026;END=21880037;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2196 chr21 21885311 GANGSTR_439055 ATCCCATCCCATCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21885311;END=21885325;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2197 chr21 21888496 GANGSTR_439056 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21888496;END=21888507;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2198 chr21 21889552 GANGSTR_439057 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21889552;END=21889563;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2199 chr21 21891199 GANGSTR_439058 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21891199;END=21891210;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2200 chr21 21899255 GANGSTR_439059 TTCCTTCCTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21899255;END=21899266;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2201 chr21 21902188 GANGSTR_439060 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21902188;END=21902199;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2202 chr21 21903606 GANGSTR_439061 ACAAACAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21903606;END=21903617;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2203 chr21 21904151 GANGSTR_439062 AAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.05;START=21904151;END=21904160;PERIOD=5;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:2:21.50|21.50:0|0:.:0:.:0:-1|1;0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2204 chr21 21911956 GANGSTR_439063 CACACACACACACACACACACACACA CACACACACACACACACACACACACACA . . INFRAME_PGEOM=0.97;INFRAME_UP=0.05;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21911956;END=21911981;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=66;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:66:0:2:1:28.28|37.72:0|0:7.43:-0.76:44:-0.12:-2|1;0|16;2|24:-2|1;0|13;2|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2205 chr21 21912387 GANGSTR_439064 AACAAAACAAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21912387;END=21912401;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2206 chr21 21917657 GANGSTR_439065 AAAATAAAATAAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21917657;END=21917681;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:29.00|24.00:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2207 chr21 21920970 GANGSTR_439066 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21920970;END=21920981;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2208 chr21 21925407 GANGSTR_439067 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.94;INFRAME_UP=0.12;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21925407;END=21925442;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,2;DP=70;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|2:1:0.5:70:0:2:1:30.46|39.54:0|0:7.28:-1.33:37:-0.31:-4|1;-2|12;0|8;2|12:-2|11;0|2;2|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2209 chr21 21926605 GANGSTR_439068 TATATATATATATATATATATATA TATATATATATATATATATATA,TATATATATATATATATATATATATATA . . INFRAME_PGEOM=0.93;INFRAME_UP=0.05;INFRAME_DOWN=0.15;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=21926605;END=21926628;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,4;DP=32;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|4:1:0.5:32:0:2:0:20.54|11.46:0|0:6.96:-0.94:20:0:-21|1;-4|1;-2|13;2|1;4|3:-4|1;-2|11;2|1;4|3:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2210 chr21 21929026 GANGSTR_439069 TATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21929026;END=21929041;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2211 chr21 21931934 GANGSTR_439070 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21931934;END=21931945;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|34:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2212 chr21 21934006 GANGSTR_439071 AACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21934006;END=21934014;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:31.01|25.99:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2213 chr21 21938951 GANGSTR_439072 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21938951;END=21938962;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2214 chr21 21941316 GANGSTR_439073 TTCTTCTTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21941316;END=21941327;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|47:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2215 chr21 21942273 GANGSTR_439074 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21942273;END=21942282;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2216 chr21 21947677 GANGSTR_439075 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21947677;END=21947692;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2217 chr21 21950171 GANGSTR_439076 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21950171;END=21950182;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2218 chr21 21952245 GANGSTR_439077 ACACACACACACACAC ACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=21952245;END=21952260;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=18;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|18:1:0.5:49:0:0:0:28.19|20.81:0|0:125.11:-0.53:33:0:0|19;18|12:0|17;18|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2219 chr21 21957087 GANGSTR_439078 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=21957087;END=21957106;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2220 chr21 21959768 GANGSTR_439079 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21959768;END=21959779;PERIOD=2;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:1:18.50|18.50:0|0:.:0:.:0:-8|1;0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2221 chr21 21963597 GANGSTR_439081 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21963597;END=21963611;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2222 chr21 21965967 GANGSTR_439082 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21965967;END=21965978;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|27:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2223 chr21 21968199 GANGSTR_439083 TGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21968199;END=21968213;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2224 chr21 21970085 GANGSTR_439084 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21970085;END=21970094;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2225 chr21 21978495 GANGSTR_439085 CAATACAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21978495;END=21978504;PERIOD=5;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2226 chr21 21978821 GANGSTR_439086 GAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGA . . INFRAME_PGEOM=0.97;INFRAME_UP=0.07;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=21978821;END=21978842;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=47;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|0:2|0:1:0.5:47:0:1:0:20.86|26.14:0|0:9.15:-0.41:34:0:-2|1;0|14;2|9:-2|1;0|13;2|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2227 chr21 21980046 GANGSTR_439087 TATTGAAAGAAAGAAA TGTTGAAAGAAAGAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21980050;END=21980061;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:49:0:0:1:24.50|24.50:0|0:8.35:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2228 chr21 21984240 GANGSTR_439088 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21984240;END=21984251;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|45:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2229 chr21 21988124 GANGSTR_439089 ATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=21988124;END=21988137;PERIOD=2;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|34:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2230 chr21 21993614 GANGSTR_439090 AGAAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21993614;END=21993623;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2231 chr21 21994237 GANGSTR_439091 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=21994237;END=21994248;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2232 chr21 22000717 GANGSTR_439092 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22000717;END=22000731;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2233 chr21 22000941 GANGSTR_439093 TACTTACTTACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22000941;END=22000952;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2234 chr21 22012089 GANGSTR_439095 TAGAATAGAATAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=22012089;END=22012103;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|20:0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2235 chr21 22019543 GANGSTR_439096 AAATTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22019543;END=22019552;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2236 chr21 22027814 GANGSTR_439097 AATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22027814;END=22027823;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2237 chr21 22029336 GANGSTR_439098 ATAAAATAAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22029336;END=22029350;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2238 chr21 22034578 GANGSTR_439100 AAGGGAAAGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22034578;END=22034589;PERIOD=6;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|25:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2239 chr21 22040822 GANGSTR_439101 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22040822;END=22040836;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2240 chr21 22045319 GANGSTR_439102 GGTGGGGTGGGGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22045319;END=22045333;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2241 chr21 22051759 GANGSTR_439103 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22051759;END=22051770;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2242 chr21 22053296 GANGSTR_439104 TGTGTGTGTGTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22053296;END=22053307;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:1:0:25.50|25.50:0|0:.:0:.:0:-2|1;0|36:-2|1;0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2243 chr21 22053663 GANGSTR_439105 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22053663;END=22053677;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2244 chr21 22058642 GANGSTR_439106 ATAAAATAAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=22058642;END=22058656;PERIOD=5;NSKIP=0;NFILT=0;DP=25;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:25:0:0:0:12.50|12.50:0|0:.:0:.:0:0|13:0|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2245 chr21 22067419 GANGSTR_439108 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22067419;END=22067430;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2246 chr21 22067496 GANGSTR_439109 TAATTAATTAATTAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22067496;END=22067511;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2247 chr21 22073062 GANGSTR_439110 TATATATATATATATATATA TATATATATATATATATA . . INFRAME_PGEOM=0.98;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22073062;END=22073081;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=63;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:63:0:3:0:31.50|31.50:0|0:12.46:0:.:0:-4|3;-2|37;0|1:-4|1;-2|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2248 chr21 22073683 GANGSTR_439111 CACCACCACCACCACCACCACCAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=22073683;END=22073706;PERIOD=3;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:1:22.00|22.00:0|0:.:0:.:0:0|21:0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2249 chr21 22074421 GANGSTR_439113 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22074421;END=22074432;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2250 chr21 22079899 GANGSTR_439114 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22079899;END=22079910;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2251 chr21 22087272 GANGSTR_439115 TCTCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22087272;END=22087287;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:0|42:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2252 chr21 22087728 GANGSTR_439116 AAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22087728;END=22087735;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2253 chr21 22088533 GANGSTR_439117 AATGGAATGGAATGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22088533;END=22088547;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2254 chr21 22091857 GANGSTR_439119 ATATATATATATATATAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=22091857;END=22091874;PERIOD=2;NSKIP=0;NFILT=0;DP=32;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:32:0:1:0:16.00|16.00:0|0:.:0:.:0:-2|1;0|21:-2|1;0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2255 chr21 22094590 GANGSTR_439120 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22094590;END=22094601;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2256 chr21 22096208 GANGSTR_439121 TTCTTTCTTTCTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22096208;END=22096223;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2257 chr21 22105250 GANGSTR_439122 AATAATAATAATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22105250;END=22105273;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|33:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2258 chr21 22113687 GANGSTR_439123 GTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTT GTTTGTTTGTTTGTTTGTTTGTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22113687;END=22113718;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-8;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-8|-8:1:1:71:0:0:0:35.50|35.50:0|0:14.41:0:.:0:-8|45:-8|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2259 chr21 22114328 GANGSTR_439124 GTTTGTTTGTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22114328;END=22114347;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2260 chr21 22127945 GANGSTR_439125 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22127945;END=22127956;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|40:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2261 chr21 22128529 GANGSTR_439126 ATATCAATATCAATATCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22128529;END=22128546;PERIOD=6;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:1:33.50|33.50:0|0:.:0:.:0:0|40:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2262 chr21 22129126 GANGSTR_439127 AACAAACAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22129126;END=22129137;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2263 chr21 22129887 GANGSTR_439128 TGATGATGATGA TGATGCTGATGA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22129887;END=22129898;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:41:0:0:0:20.50|20.50:0|0:10.96:0:.:0:0|26:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2264 chr21 22133264 GANGSTR_439129 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22133264;END=22133275;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2265 chr21 22134042 GANGSTR_439130 ACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22134042;END=22134055;PERIOD=2;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2266 chr21 22142829 GANGSTR_439132 TGTTTGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22142829;END=22142844;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2267 chr21 22149357 GANGSTR_439133 TTCTTTCTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22149357;END=22149368;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2268 chr21 22158663 GANGSTR_439134 GTAGTAGTAGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22158663;END=22158674;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|52:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2269 chr21 22163232 GANGSTR_439135 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22163232;END=22163241;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2270 chr21 22164209 GANGSTR_439136 TAGGCTAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22164209;END=22164218;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2271 chr21 22167980 GANGSTR_439137 TTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22167980;END=22167994;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|49:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2272 chr21 22175333 GANGSTR_439138 TTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22175333;END=22175342;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2273 chr21 22178146 GANGSTR_439139 ATTAATTAATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=22178146;END=22178161;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:2:37.50|37.50:0|0:.:0:.:0:-1|1;0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2274 chr21 22201592 GANGSTR_439141 TTAAATTAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22201592;END=22201601;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2275 chr21 22202149 GANGSTR_439142 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22202149;END=22202160;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|49:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2276 chr21 22202453 GANGSTR_439143 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22202453;END=22202464;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2277 chr21 22205417 GANGSTR_439144 AACAACAACAACAACAACAACAACAACAACAACAACAAC AACAACAACAACAACAACAACAACAACAACAACAAC . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22205417;END=22205455;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=60;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-3|-3:1:1:60:0:2:1:30.00|30.00:0|0:8.06:0:.:0:-6|2;-3|28:-6|1;-3|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2278 chr21 22206612 GANGSTR_439145 TTTAGTTTTAGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22206612;END=22206623;PERIOD=6;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|26:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2279 chr21 22207210 GANGSTR_439146 ACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22207210;END=22207223;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2280 chr21 22208653 GANGSTR_439147 TTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22208653;END=22208662;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2281 chr21 22211502 GANGSTR_439148 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22211502;END=22211513;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2282 chr21 22220907 GANGSTR_439149 TTGTTTGTTTGTTTGTTTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22220907;END=22220934;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.50|32.50:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2283 chr21 22236230 GANGSTR_439152 TATGTATATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22236230;END=22236241;PERIOD=6;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2284 chr21 22238740 GANGSTR_439153 ACAAACAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22238740;END=22238751;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2285 chr21 22244696 GANGSTR_439154 CACATACACATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22244696;END=22244707;PERIOD=6;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2286 chr21 22247063 GANGSTR_439156 ATGTCATACATACATA AAGTCATACATACATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22247067;END=22247078;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:45:0:0:0:22.50|22.50:0|0:12.64:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2287 chr21 22247130 GANGSTR_439157 TGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22247130;END=22247149;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|32:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2288 chr21 22253866 GANGSTR_439158 CTCTCTCTCTCTCTCTCTCTCTCT . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22253866;END=22253889;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:1:2:25.00|25.00:0|0:.:0:.:0:-2|1;0|29:-2|1;0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2289 chr21 22254581 GANGSTR_439159 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22254581;END=22254592;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2290 chr21 22255252 GANGSTR_439160 TTGTTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22255252;END=22255261;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2291 chr21 22257559 GANGSTR_439161 TAGTAGTAGTAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22257559;END=22257570;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2292 chr21 22257769 GANGSTR_439162 TACTTACTTACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22257769;END=22257780;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:1:33.00|33.00:0|0:.:0:.:0:-24|1;0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2293 chr21 22260747 GANGSTR_439163 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22260747;END=22260758;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|52:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2294 chr21 22271209 GANGSTR_439164 AATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22271209;END=22271217;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2295 chr21 22280537 GANGSTR_439167 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22280537;END=22280548;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2296 chr21 22287007 GANGSTR_439169 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22287007;END=22287018;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|25:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2297 chr21 22291142 GANGSTR_439170 AAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAG AAAAGAAAAGAAAAGAAAAGAAAAG,AAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.11;START=22291142;END=22291176;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-10,14;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=0;AC=1,1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-10|14:1:0.5:49:0:0:3:20.70|28.30:0|0:37.7:-0.57:40:-0.69:-13|1;-11|1;-10|10;1|1;11|1;14|5:-10|12;14|5:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2298 chr21 22298867 GANGSTR_439171 TGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.99;INFRAME_UP=0.05;INFRAME_DOWN=0.15;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22298867;END=22298894;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=57;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:57:0:1:1:29.45|27.55:0|0:6.78:-0.13:35:-0.13:-10|1;-2|1;0|17;2|10:-2|1;0|16;2|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2299 chr21 22311264 GANGSTR_439173 TAGCCTAGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22311264;END=22311273;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2300 chr21 22311599 GANGSTR_439174 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22311599;END=22311610;PERIOD=2;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2301 chr21 22317684 GANGSTR_439175 TAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22317684;END=22317692;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|47:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2302 chr21 22320244 GANGSTR_439176 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22320244;END=22320255;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2303 chr21 22320779 GANGSTR_439177 ACACACACACACACACACACACACACACACACACACACAC . . . INFRAME_PGEOM=0.97;INFRAME_UP=0.03;INFRAME_DOWN=0.19;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22320779;END=22320818;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=6;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:6:1:29.50|29.50:0|0:.:0:.:0:-2|5;0|21:-2|5;0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2304 chr21 22325189 GANGSTR_439178 AAAAATTAAAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22325189;END=22325202;PERIOD=7;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|34:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2305 chr21 22333976 GANGSTR_439179 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22333976;END=22333987;PERIOD=2;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2306 chr21 22335462 GANGSTR_439180 TTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22335462;END=22335476;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2307 chr21 22337282 GANGSTR_439181 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22337282;END=22337293;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2308 chr21 22339464 GANGSTR_439182 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22339464;END=22339475;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2309 chr21 22341861 GANGSTR_439183 TTTTGGTTTTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22341861;END=22341872;PERIOD=6;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|46:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2310 chr21 22342224 GANGSTR_439184 ATCTATCTATCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22342224;END=22342235;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2311 chr21 22342558 GANGSTR_439185 TTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22342558;END=22342572;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2312 chr21 22345636 GANGSTR_439186 TATTTATTTATTTATTTATTTATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=22345636;END=22345671;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|15:0|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2313 chr21 22352366 GANGSTR_439187 TTCTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22352366;END=22352373;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2314 chr21 22353978 GANGSTR_439188 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22353978;END=22354009;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6,-2;DP=57;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-6|-2:1:0.5:57:0:1:0:29.99|27.01:0|0:17.99:-0.13:39:0:-8|1;-6|19;-2|16:-8|1;-6|18;-2|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2315 chr21 22354377 GANGSTR_439189 TTTTATTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=22354377;END=22354396;PERIOD=5;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|22:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2316 chr21 22357339 GANGSTR_439191 TGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22357339;END=22357356;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2317 chr21 22370777 GANGSTR_439193 GCGGCGGCGGCG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22370777;END=22370788;PERIOD=3;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2318 chr21 22371192 GANGSTR_439194 CTTCTTCTTCTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22371192;END=22371206;PERIOD=3;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:1:17.00|27.00:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2319 chr21 22382201 GANGSTR_439195 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.94;INFRAME_UP=0.04;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=22382201;END=22382234;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6,6;DP=66;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-6|6:1:0.5:66:0:2:0:31.93|34.07:0|0:49.45:-0.22:34:0:-11|1;-8|2;-6|13;-5|1;0|5;6|9:-8|2;-6|13;6|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2320 chr21 22385154 GANGSTR_439196 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22385154;END=22385165;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:2:29.50|29.50:0|0:.:0:.:0:-37|1;0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2321 chr21 22388007 GANGSTR_439197 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22388007;END=22388022;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|30:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2322 chr21 22389050 GANGSTR_439198 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22389050;END=22389061;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:35.00|20.00:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2323 chr21 22392352 GANGSTR_439199 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22392352;END=22392363;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2324 chr21 22397242 GANGSTR_439201 GTTTTGTTTTGTTTTGTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22397242;END=22397261;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:2:27.42|27.58:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2325 chr21 22399532 GANGSTR_439202 TATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22399532;END=22399539;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2326 chr21 22399609 GANGSTR_439203 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22399609;END=22399620;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2327 chr21 22401926 GANGSTR_439204 TATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=22401926;END=22401933;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:-1|1;0|43:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2328 chr21 22413944 GANGSTR_439205 GTGGTGGTGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22413944;END=22413955;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|33:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2329 chr21 22415230 GANGSTR_439206 GAAAAGAAAAGAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22415230;END=22415244;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2330 chr21 22417245 GANGSTR_439207 TGTATGTGTATG TGTATGTGTACG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22417245;END=22417256;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:62:0:0:0:31.00|31.00:0|0:17.66:0:.:0:0|44:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2331 chr21 22417587 GANGSTR_439208 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22417587;END=22417602;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2332 chr21 22417968 GANGSTR_439209 AGAAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22417968;END=22417977;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2333 chr21 22419053 GANGSTR_439210 TTTGTTTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22419053;END=22419072;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2334 chr21 22425251 GANGSTR_439212 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22425251;END=22425262;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2335 chr21 22427519 GANGSTR_439213 ATAATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22427519;END=22427533;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2336 chr21 22435991 GANGSTR_439214 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22435991;END=22436000;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2337 chr21 22438736 GANGSTR_439215 ACACACACACACAC ACACACACACACACAC . . INFRAME_PGEOM=0.97;INFRAME_UP=0.04;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22438736;END=22438749;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:49:0:0:0:26.34|22.66:0|0:20.26:-0.19:42:-0.27:0|22;2|15:0|20;2|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2338 chr21 22442586 GANGSTR_439216 TATATATATATATATATATA TATATATATATATATATA,TATATATATATATATATATATA . . INFRAME_PGEOM=0.73;INFRAME_UP=0.08;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=22442586;END=22442605;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,2;DP=35;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|2:1:0.5:35:0:2:0:21.32|13.68:0|0:7.7:-0.73:28:-0.44:-6|1;-2|15;2|8;4|1:-6|1;-2|14;2|6;4|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2339 chr21 22451521 GANGSTR_439218 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22451521;END=22451532;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2340 chr21 22454180 GANGSTR_439220 AAACAAACAAAC AAACAAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22454180;END=22454191;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:65:0:0:0:32.50|32.50:0|0:18.02:0:.:0:-4|61:-4|60:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2341 chr21 22455428 GANGSTR_439221 AGTAGTAGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22455428;END=22455436;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2342 chr21 22455552 GANGSTR_439222 ATGAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22455552;END=22455559;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:-23|1;0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2343 chr21 22459148 GANGSTR_439223 GTGTGTGTGTGTGTGT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22459148;END=22459163;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:1:1:32.50|32.50:0|0:.:0:.:0:-2|1;0|46:-2|1;0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2344 chr21 22463464 GANGSTR_439224 ATGAATGAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22463464;END=22463475;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2345 chr21 22465120 GANGSTR_439225 ATATAATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22465120;END=22465129;PERIOD=5;NSKIP=0;NFILT=0;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:36:0:0:0:18.00|18.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2346 chr21 22469067 GANGSTR_439226 TGTGTGTGTGTGTG TTTTTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22469067;END=22469080;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:63:0:0:0:31.50|31.50:0|0:16.55:0:.:0:-3|2;0|45:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2347 chr21 22472840 GANGSTR_439227 AATAGAATAGAATAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22472840;END=22472854;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2348 chr21 22475116 GANGSTR_439228 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22475116;END=22475127;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2349 chr21 22476540 GANGSTR_439229 CCTCCTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22476540;END=22476548;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2350 chr21 22477520 GANGSTR_439230 GAAATGAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22477520;END=22477529;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2351 chr21 22483475 GANGSTR_439231 TATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22483475;END=22483484;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2352 chr21 22487094 GANGSTR_439233 AAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22487094;END=22487108;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2353 chr21 22499630 GANGSTR_439234 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22499630;END=22499641;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2354 chr21 22499756 GANGSTR_439235 TTATTTATTTAT TTATTTATTGAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22499756;END=22499767;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:62:0:0:1:28.48|33.52:0|0:82.47:-0.23:53:-0.23:-5|1;0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2355 chr21 22511161 GANGSTR_439236 AGGTAAGGTAAGGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22511161;END=22511175;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:2:30.50|30.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2356 chr21 22515169 GANGSTR_439237 TCATTCATTCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22515169;END=22515180;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:1:23.50|23.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2357 chr21 22518096 GANGSTR_439238 CGATAAATAAATAA CAATAAATAAATAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22518098;END=22518109;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:49:0:0:0:28.02|20.98:0|0:68.03:-0.43:45:-0.12:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2358 chr21 22518611 GANGSTR_439239 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22518611;END=22518625;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2359 chr21 22523296 GANGSTR_439240 ATATATATATAT ATATAATATAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.97;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22523296;END=22523307;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:60:0:0:0:25.49|34.51:0|0:245.22:-0.53:59:0:-1|28;0|22:-1|23;0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2360 chr21 22528898 GANGSTR_439241 ATAGATAGATAGATAGATAGATAGATAGATAGATAG . . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22528898;END=22528933;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:1:0:34.50|34.50:0|0:.:0:.:0:0|35;4|1:0|34;4|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2361 chr21 22530132 GANGSTR_439242 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22530132;END=22530143;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2362 chr21 22532544 GANGSTR_439243 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22532544;END=22532555;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2363 chr21 22532785 GANGSTR_439244 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22532785;END=22532796;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2364 chr21 22538522 GANGSTR_439245 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22538522;END=22538533;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2365 chr21 22539529 GANGSTR_439246 TCTCTCTCTCTCTCTCACC TCTCTCTCTCTCTCTCACT . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22539529;END=22539544;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:54:0:1:0:27.00|27.00:0|0:13.84:0:.:0:-2|1;0|38:-2|1;0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2366 chr21 22542278 GANGSTR_439247 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22542278;END=22542292;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2367 chr21 22542454 GANGSTR_439248 CATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22542454;END=22542465;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2368 chr21 22544302 GANGSTR_439249 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22544302;END=22544313;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2369 chr21 22547060 GANGSTR_439250 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22547060;END=22547071;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2370 chr21 22549990 GANGSTR_439251 CCTTTCCCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22549990;END=22550001;PERIOD=6;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|40:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2371 chr21 22551497 GANGSTR_439252 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22551497;END=22551508;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2372 chr21 22552190 GANGSTR_439253 AACAAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=22552190;END=22552199;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:1:33.00|33.00:0|0:.:0:.:0:-1|1;0|48:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2373 chr21 22559544 GANGSTR_439255 AAACAAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22559544;END=22559567;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:23.50|27.50:0|0:.:0:.:0:0|25:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2374 chr21 22559760 GANGSTR_439256 CAACAACAACAACAACAACAACAA CAACAACAACAACAACAACAAAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22559760;END=22559783;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:58:0:0:1:29.00|29.00:0|0:13.81:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2375 chr21 22563853 GANGSTR_439257 TACATACATACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22563853;END=22563864;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2376 chr21 22570504 GANGSTR_439258 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.92;INFRAME_UP=0.08;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=22570504;END=22570547;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-14,-10;DP=55;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-14|-10:1:0.5:55:0:1:0:29.86|25.14:0|0:16.08:-0.33:31:-0.83:-14|17;-12|1;-10|6:-14|15;-12|1;-10|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2377 chr21 22577351 GANGSTR_439259 ATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22577351;END=22577364;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2378 chr21 22581537 GANGSTR_439260 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22581537;END=22581548;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2379 chr21 22581701 GANGSTR_439261 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22581701;END=22581712;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2380 chr21 22583287 GANGSTR_439262 ACACACACACACACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.92;INFRAME_UP=0.1;INFRAME_DOWN=0.16;OUTFRAME_PGEOM=0.99;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.12;START=22583287;END=22583342;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-16,-14;DP=52;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-16|-14:1:0.5:52:0:2:1:26.33|25.67:0|0:3.27:-0.07:26:0:-18|2;-17|1;-16|10;-14|10:-18|2;-16|10;-14|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2381 chr21 22583932 GANGSTR_439263 ACAACAACAACAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22583932;END=22583946;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2382 chr21 22601981 GANGSTR_439264 TTATCTCATTATCTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22601981;END=22601996;PERIOD=8;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|34:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2383 chr21 22605494 GANGSTR_439265 TTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22605494;END=22605503;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2384 chr21 22608483 GANGSTR_439266 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22608483;END=22608498;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2385 chr21 22609077 GANGSTR_439267 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=22609077;END=22609106;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-8;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-8|-8:1:1:41:0:0:0:20.50|20.50:0|0:7.83:0:.:0:-8|24:-8|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2386 chr21 22616582 GANGSTR_439268 AAGAAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22616582;END=22616591;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2387 chr21 22618069 GANGSTR_439269 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22618069;END=22618080;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|55:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2388 chr21 22619640 GANGSTR_439271 AACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22619640;END=22619654;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2389 chr21 22620374 GANGSTR_439272 TTCAATTCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22620374;END=22620383;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2390 chr21 22621410 GANGSTR_439273 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22621410;END=22621421;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|45:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2391 chr21 22623471 GANGSTR_439275 TTATTTTATTTTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22623471;END=22623490;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2392 chr21 22625133 GANGSTR_439276 TTCCTTCCTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22625133;END=22625144;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2393 chr21 22632240 GANGSTR_439277 ACACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=22632240;END=22632285;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-10;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=3;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-10|-10:1:1:54:0:1:3:27.00|27.00:0|0:5.63:0:.:0:-12|2;-10|17;-2|1:-10|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2394 chr21 22634715 GANGSTR_439278 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22634715;END=22634726;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:1:0:29.50|29.50:0|0:.:0:.:0:-2|1;0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2395 chr21 22635585 GANGSTR_439279 AAAATAAAATAAAATAAAAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22635585;END=22635604;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:1:1:31.00|31.00:0|0:.:0:.:0:-5|1;0|30:-5|1;0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2396 chr21 22639195 GANGSTR_439282 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22639195;END=22639206;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2397 chr21 22640845 GANGSTR_439283 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22640845;END=22640856;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2398 chr21 22649248 GANGSTR_439284 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22649248;END=22649259;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2399 chr21 22651109 GANGSTR_439285 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22651109;END=22651120;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2400 chr21 22652490 GANGSTR_439286 GTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22652490;END=22652509;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:64:0:0:0:32.00|32.00:0|0:14:0:.:0:-2|45:-2|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2401 chr21 22657995 GANGSTR_439287 TTCATTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22657995;END=22658010;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2402 chr21 22658062 GANGSTR_439288 AGACAGACAGAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22658062;END=22658073;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2403 chr21 22658545 GANGSTR_439289 TTTGTGATTTGTGATTTGTGA TTTGTGATTTGTGA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22658545;END=22658565;PERIOD=7;NSKIP=0;NFILT=0;BPDIFFS=-7;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-7|-7:1:1:59:0:0:0:29.50|29.50:0|0:12.18:0:.:0:-7|38:-7|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2404 chr21 22660836 GANGSTR_439290 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22660836;END=22660850;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2405 chr21 22662632 GANGSTR_439291 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22662632;END=22662643;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|36:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2406 chr21 22663800 GANGSTR_439292 CACACACACACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22663800;END=22663819;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2407 chr21 22670909 GANGSTR_439293 AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT AGATAGATAGATAGATAGATAGATAGATAGAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=22670909;END=22670952;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-12;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-12|-12:1:1:61:0:0:1:30.50|30.50:0|0:7.46:0:.:0:-12|21:-12|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2408 chr21 22681337 GANGSTR_439294 TGAAAATGAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22681337;END=22681348;PERIOD=6;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|34:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2409 chr21 22682528 GANGSTR_439295 ATTAATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22682528;END=22682539;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2410 chr21 22683548 GANGSTR_439296 TTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22683548;END=22683562;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2411 chr21 22684791 GANGSTR_439297 AATTAAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22684791;END=22684800;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2412 chr21 22685546 GANGSTR_439298 TTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22685546;END=22685555;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2413 chr21 22689858 GANGSTR_439300 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22689858;END=22689869;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|49:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2414 chr21 22690596 GANGSTR_439301 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22690596;END=22690607;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2415 chr21 22690846 GANGSTR_439302 ATTTTTATTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22690846;END=22690857;PERIOD=6;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2416 chr21 22694448 GANGSTR_439303 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22694448;END=22694463;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2417 chr21 22700344 GANGSTR_439304 AATTTAATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22700344;END=22700353;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:1:24.00|24.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2418 chr21 22702486 GANGSTR_439305 TTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22702486;END=22702494;PERIOD=3;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|53:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2419 chr21 22704221 GANGSTR_439306 TTTATTTATTTATTTA TTTATTTATTTATTTATTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=22704221;END=22704236;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:47:0:0:0:23.50|23.50:0|0:9.08:0:.:0:4|25:4|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2420 chr21 22706076 GANGSTR_439307 TATTATTATTATTAT . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22706076;END=22706090;PERIOD=3;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:2:1:35.50|35.50:0|0:.:0:.:0:-3|2;0|47:-3|2;0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2421 chr21 22708686 GANGSTR_439308 AAGGAAGGAAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22708686;END=22708697;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2422 chr21 22713830 GANGSTR_439309 AAACTAAACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22713830;END=22713839;PERIOD=5;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2423 chr21 22722540 GANGSTR_439310 AAAAATTAAAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22722540;END=22722553;PERIOD=7;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|36:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2424 chr21 22724239 GANGSTR_439311 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22724239;END=22724250;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|42:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2425 chr21 22724599 GANGSTR_439312 TGGTGGTGGTGGTGGTGG TGTTGGTGGTGGTGGTGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22724599;END=22724616;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:62:0:0:0:31.00|31.00:0|0:16.81:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2426 chr21 22729308 GANGSTR_439313 AATAAATAAATAAATAAATAAATAAATAAATAAATA AATAAATAAATAAATAAATAAATAAATAAATAAATAAATA . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=22729308;END=22729343;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:55:0:0:0:27.50|27.50:0|0:4.93:0:.:0:-23|1;0|2;4|14:4|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2427 chr21 22732476 GANGSTR_439314 TAATTAATTAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22732476;END=22732487;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2428 chr21 22736942 GANGSTR_439315 ATGTATATGTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22736942;END=22736953;PERIOD=6;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|29:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2429 chr21 22737482 GANGSTR_439316 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22737482;END=22737493;PERIOD=2;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2430 chr21 22737559 GANGSTR_439317 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.98;INFRAME_UP=0.09;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=22737559;END=22737592;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-8,-6;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-8|-6:1:0.5:48:0:0:0:23.27|24.73:0|0:3.72:-0.08:20:0:-8|8;-6|11:-8|8;-6|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2431 chr21 22744186 GANGSTR_439318 CACACACACACACACACACACACACA . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22744186;END=22744211;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:1:0:29.50|29.50:0|0:.:0:.:0:-2|1;0|30:-2|1;0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2432 chr21 22747479 GANGSTR_439319 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22747479;END=22747490;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2433 chr21 22750149 GANGSTR_439320 TTCCTTCCTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22750149;END=22750160;PERIOD=4;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:0:0:40.00|40.00:0|0:.:0:.:0:0|55:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2434 chr21 22755003 GANGSTR_439321 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22755003;END=22755017;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2435 chr21 22756592 GANGSTR_439322 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22756592;END=22756606;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2436 chr21 22762174 GANGSTR_439323 TATTATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22762174;END=22762188;PERIOD=3;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|29:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2437 chr21 22777418 GANGSTR_439324 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22777418;END=22777429;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2438 chr21 22777484 GANGSTR_439325 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22777484;END=22777495;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2439 chr21 22782867 GANGSTR_439326 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22782867;END=22782878;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2440 chr21 22783540 GANGSTR_439327 ATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22783540;END=22783553;PERIOD=2;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:0:19.50|19.50:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2441 chr21 22800500 GANGSTR_439328 ATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22800500;END=22800507;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2442 chr21 22802351 GANGSTR_439329 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22802351;END=22802362;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2443 chr21 22805373 GANGSTR_439330 AGAAAGAAAGAA AGAAAGAAAGAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22805373;END=22805384;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:61:0:0:0:30.50|30.50:0|0:15.95:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2444 chr21 22809795 GANGSTR_439332 TGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.35;INFRAME_UP=0.05;INFRAME_DOWN=0.16;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=22809795;END=22809820;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=8,18;DP=58;DSNP=0;DSTUTTER=2;DFLANKINDEL=4;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:8|18:1:0.5:58:0:2:4:30.21|27.79:0|0:18.7:-0.07:30:-0.55:-46|1;-39|1;0|8;8|15;16|2;17|1;18|8:6|1;8|14;18|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2445 chr21 22810233 GANGSTR_439333 TATATATATATATA TATATATATATATATATA . . INFRAME_PGEOM=0.91;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.05;START=22810233;END=22810246;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:49:0:0:0:28.48|20.52:0|0:29.56:-0.57:40:-0.13:-8|2;-4|1;-1|2;0|24;4|11:0|24;4|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2446 chr21 22820828 GANGSTR_439335 AAATAAATAAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=22820828;END=22820855;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|21:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2447 chr21 22823279 GANGSTR_439336 ATATATATATATAT ATATATATATAT . . INFRAME_PGEOM=0.98;INFRAME_UP=0.03;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22823279;END=22823292;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=69;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:69:0:1:0:30.57|38.43:0|0:15.49:-1.01:53:0:-4|1;-2|33;0|18:-4|1;-2|30;0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2448 chr21 22824489 GANGSTR_439337 CACACACACACACACACACACACACACA CACACACACACACACACAGACACA . . INFRAME_PGEOM=0.73;INFRAME_UP=0.08;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=22824489;END=22824516;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=40;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:40:0:3:0:19.82|20.18:0|0:75.6:-0:33:-0.14:-6|2;-4|11;0|11;4|1:-6|2;-4|9;0|9;4|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2449 chr21 22831738 GANGSTR_439339 ACACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=22831738;END=22831753;PERIOD=2;NSKIP=0;NFILT=0;DP=26;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:26:0:0:0:13.00|13.00:0|0:.:0:.:0:0|20:0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2450 chr21 22832465 GANGSTR_439340 ATTTTTATTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22832465;END=22832476;PERIOD=6;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:27.50|34.50:0|0:.:0:.:0:0|39:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2451 chr21 22843455 GANGSTR_439341 ATCTCATCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22843455;END=22843464;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2452 chr21 22847363 GANGSTR_439342 ATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=22847363;END=22847376;PERIOD=2;NSKIP=0;NFILT=0;DP=32;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:32:0:0:0:16.00|16.00:0|0:.:0:.:0:0|24:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2453 chr21 22852052 GANGSTR_439343 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22852052;END=22852063;PERIOD=2;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2454 chr21 22861303 GANGSTR_439344 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22861303;END=22861314;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2455 chr21 22870207 GANGSTR_439345 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22870207;END=22870218;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2456 chr21 22871577 GANGSTR_439346 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22871577;END=22871588;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|33:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2457 chr21 22872433 GANGSTR_439347 GAAGGAAGGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22872433;END=22872444;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2458 chr21 22879437 GANGSTR_439348 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22879437;END=22879446;PERIOD=5;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:0:38.50|38.50:0|0:.:0:.:0:0|55:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2459 chr21 22883662 GANGSTR_439349 GTTGTTGTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22883662;END=22883673;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2460 chr21 22892872 GANGSTR_439350 ACAAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22892872;END=22892881;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2461 chr21 22894046 GANGSTR_439351 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22894046;END=22894057;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2462 chr21 22896360 GANGSTR_439352 CACACACACACACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22896360;END=22896381;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2463 chr21 22902069 GANGSTR_439353 CTCTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22902069;END=22902082;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2464 chr21 22902811 GANGSTR_439354 TTCCTTCCTTCC TTCTTTCCTTCC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=22902811;END=22902822;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=30;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:30:0:0:0:14.52|15.48:0|0:39.85:-0:23:-0.23:0|17:0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2465 chr21 22904510 GANGSTR_439355 TACATACATACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22904510;END=22904521;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.44|27.56:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2466 chr21 22904722 GANGSTR_439356 AATTAAAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22904722;END=22904733;PERIOD=6;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|29:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2467 chr21 22912239 GANGSTR_439357 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22912239;END=22912253;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2468 chr21 22914239 GANGSTR_439358 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22914239;END=22914250;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2469 chr21 22919087 GANGSTR_439359 TAGATAGATAGATAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22919087;END=22919102;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2470 chr21 22927887 GANGSTR_439360 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22927887;END=22927898;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2471 chr21 22934353 GANGSTR_439361 AAATAAATAAATAAATAAATAAATAAATAAATAAAT AAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT . . INFRAME_PGEOM=0.98;INFRAME_UP=0.1;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=22934353;END=22934388;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=39;DSNP=0;DSTUTTER=5;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:0.43:0.43:39:0:5:0:19.50|19.50:0|0:-0.12:0:.:0:-22|1;0|5;4|8:0|4;4|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2472 chr21 22937852 GANGSTR_439362 TAAAATAAAATAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22937852;END=22937866;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2473 chr21 22967489 GANGSTR_439364 ATTCCATTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22967489;END=22967498;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2474 chr21 22972091 GANGSTR_439365 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22972091;END=22972100;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2475 chr21 22974115 GANGSTR_439366 TTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22974115;END=22974126;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2476 chr21 22977035 GANGSTR_439367 TTCATTCATTCATTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=22977035;END=22977058;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2477 chr21 22989265 GANGSTR_439368 ATGAATGAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22989265;END=22989276;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:35.50|20.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2478 chr21 22998507 GANGSTR_439369 GGGTGGGTGGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=22998507;END=22998518;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2479 chr21 23008975 GANGSTR_439370 ATTTATTTATTTATTT ATTTATTTATTTATTTATTT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.03;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23008975;END=23008990;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=84;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:84:0:0:0:42.55|41.45:0|0:23.28:-0.05:58:-0.4:-9|2;-3|1;0|29;4|22:0|26;4|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2480 chr21 23011024 GANGSTR_439371 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23011024;END=23011035;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2481 chr21 23011441 GANGSTR_439372 CTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23011441;END=23011452;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2482 chr21 23014038 GANGSTR_439373 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23014038;END=23014052;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2483 chr21 23018621 GANGSTR_439374 TTCTTTCTTTCTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23018621;END=23018636;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2484 chr21 23019741 GANGSTR_439375 TTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23019741;END=23019748;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2485 chr21 23020690 GANGSTR_439376 GAGAGAGAGAGAGAGA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23020690;END=23020705;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:1:1:29.50|29.50:0|0:.:0:.:0:-2|1;0|37:-2|1;0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2486 chr21 23024300 GANGSTR_439377 TTCTCTTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23024300;END=23024309;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2487 chr21 23026338 GANGSTR_439378 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23026338;END=23026349;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|36:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2488 chr21 23035764 GANGSTR_439380 TAGAGAAACAAACAAAC TTGAGAAACAAACAAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23035769;END=23035780;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:48:0:0:0:24.00|24.00:0|0:11.44:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2489 chr21 23035957 GANGSTR_439381 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23035957;END=23035971;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2490 chr21 23038115 GANGSTR_439382 ATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23038115;END=23038124;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2491 chr21 23038629 GANGSTR_439383 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23038629;END=23038640;PERIOD=3;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2492 chr21 23039297 GANGSTR_439384 AACAAGAACAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23039297;END=23039308;PERIOD=6;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2493 chr21 23051274 GANGSTR_439385 AAGGAAGGAAGGAAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23051274;END=23051289;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:31.50|32.50:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2494 chr21 23060597 GANGSTR_439386 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23060597;END=23060608;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2495 chr21 23061864 GANGSTR_439387 CCGATCAAACAAACAAA CTGATCAAACAAACAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23061869;END=23061880;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:51:0:0:0:26.50|24.50:0|0:78.95:-0.05:46:-0.42:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2496 chr21 23066291 GANGSTR_439388 TCATTCATTCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23066291;END=23066302;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2497 chr21 23068613 GANGSTR_439389 TTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23068613;END=23068628;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2498 chr21 23075341 GANGSTR_439391 ATCATCATCATCATCATCAGT ATCATCATCATCATCAGC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=23075341;END=23075358;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-3|-3:1:1:38:0:0:0:19.00|19.00:0|0:9.33:0:.:0:-3|27:-3|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2499 chr21 23075507 GANGSTR_439392 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23075507;END=23075518;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2500 chr21 23080696 GANGSTR_439393 TAAAATAAAATAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23080696;END=23080710;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:29.00|18.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2501 chr21 23081978 GANGSTR_439394 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23081978;END=23081989;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2502 chr21 23088257 GANGSTR_439395 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23088257;END=23088268;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2503 chr21 23089622 GANGSTR_439396 TATACTATACTT TATACTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23089622;END=23089631;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-5;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-5:1:0.5:43:0:0:0:28.59|14.41:0|0:16.34:-1.41:40:-0.5:-5|12;0|24:-5|12;0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2504 chr21 23094702 GANGSTR_439397 TTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTG TTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.08;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=23094702;END=23094751;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-5;DP=81;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-5:1:0.5:81:0:0:0:40.24|40.76:0|0:7.09:-0:33:-0.14:-5|12;0|11:-5|12;0|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2505 chr21 23095805 GANGSTR_439398 ACACACACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23095805;END=23095822;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:1:0:29.50|29.50:0|0:.:0:.:0:-2|1;0|37:-2|1;0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2506 chr21 23096308 GANGSTR_439399 TGTATGTATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23096308;END=23096319;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2507 chr21 23096956 GANGSTR_439400 TCCTCCTCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23096956;END=23096967;PERIOD=3;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|27:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2508 chr21 23098412 GANGSTR_439401 GAGAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23098412;END=23098425;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2509 chr21 23103556 GANGSTR_439402 TTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23103556;END=23103570;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2510 chr21 23103753 GANGSTR_439403 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23103753;END=23103764;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|51:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2511 chr21 23108906 GANGSTR_439404 ACACACACACAC AAACACACACAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23108906;END=23108917;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:59:0:0:0:29.50|29.50:0|0:15.95:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2512 chr21 23109398 GANGSTR_439405 ACAAACAAACAAACAAACAA ACAAACAAACAAACAAACAAACAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23109398;END=23109417;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:70:0:0:2:35.00|35.00:0|0:13.04:0:.:0:-4|3;-3|1;-2|1;4|36:4|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2513 chr21 23110563 GANGSTR_439406 AGAGAGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23110563;END=23110578;PERIOD=2;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|44:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2514 chr21 23113525 GANGSTR_439407 TAATTTTAATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23113525;END=23113536;PERIOD=6;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:23.95|27.05:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2515 chr21 23119815 GANGSTR_439408 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23119815;END=23119834;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2516 chr21 23120003 GANGSTR_439409 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23120003;END=23120022;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:1:0:23.00|23.00:0|0:.:0:.:0:-4|1;0|25:-4|1;0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2517 chr21 23121835 GANGSTR_439410 CTTCCCTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23121835;END=23121844;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2518 chr21 23133329 GANGSTR_439411 ATTCAATTCAATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23133329;END=23133343;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.50|27.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2519 chr21 23133435 GANGSTR_439412 TATAGTATAGTATAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23133435;END=23133449;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:28.00|25.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2520 chr21 23134766 GANGSTR_439413 TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC TATCTATCTATCTATCTATCTATC,TATCTATCTATCTATCTATCTATCTATCTATCTATCTATC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=23134766;END=23134809;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-20,-4;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-20|-4:1:0.5:63:0:0:0:30.50|32.50:0|0:20.08:-0.07:32:-0.13:-20|15;-4|15:-20|14;-4|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2521 chr21 23135751 GANGSTR_439414 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23135751;END=23135762;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2522 chr21 23137049 GANGSTR_439415 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23137049;END=23137060;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2523 chr21 23142142 GANGSTR_439416 CTTTCCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23142142;END=23142151;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2524 chr21 23147098 GANGSTR_439417 ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=23147098;END=23147141;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:1:0:33.00|33.00:0|0:.:0:.:0:0|16:0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2525 chr21 23148885 GANGSTR_439418 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23148885;END=23148900;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2526 chr21 23153498 GANGSTR_439419 CTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23153498;END=23153509;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2527 chr21 23155966 GANGSTR_439420 GCTGCTGCTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23155966;END=23155977;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|39:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2528 chr21 23158869 GANGSTR_439421 TTTTCTTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23158869;END=23158883;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2529 chr21 23160880 GANGSTR_439422 AATGAAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=23160880;END=23160889;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2530 chr21 23162670 GANGSTR_439423 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23162670;END=23162679;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:1:2:24.01|22.99:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2531 chr21 23165332 GANGSTR_439424 ATCTAATCTAATCTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23165332;END=23165346;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2532 chr21 23167717 GANGSTR_439425 ACAAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23167717;END=23167726;PERIOD=5;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2533 chr21 23167803 GANGSTR_439426 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23167803;END=23167814;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2534 chr21 23175197 GANGSTR_439427 ACAAAACAAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23175197;END=23175211;PERIOD=5;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2535 chr21 23180922 GANGSTR_439428 GCTTGCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23180922;END=23180929;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2536 chr21 23188369 GANGSTR_439429 GTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.93;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=23188369;END=23188396;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:54:0:1:0:27.11|26.89:0|0:20.71:0:30:-0.33:-32|1;-30|1;-11|2;0|16;2|1;4|8:0|14;2|1;4|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2537 chr21 23188870 GANGSTR_439430 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23188870;END=23188881;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|39:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2538 chr21 23193798 GANGSTR_439431 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23193798;END=23193809;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|50:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2539 chr21 23204104 GANGSTR_439432 CTATACCTATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23204104;END=23204115;PERIOD=6;NSKIP=0;NFILT=0;DP=33;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:33:0:0:1:16.50|16.50:0|0:.:0:.:0:0|26:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2540 chr21 23205350 GANGSTR_439433 CTCTCTCTCTCTCTCTCT . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23205350;END=23205367;PERIOD=2;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:2:0:35.00|35.00:0|0:.:0:.:0:-2|1;0|50;2|1:-2|1;0|48;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2541 chr21 23211040 GANGSTR_439434 AAACAAACAAAC AAACAAACAACC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23211040;END=23211051;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:58:0:0:1:34.50|23.50:0|0:71.69:-0.79:51:-0.46:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2542 chr21 23212283 GANGSTR_439435 TATGTTATATGTTATATGTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23212283;END=23212303;PERIOD=7;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|34:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2543 chr21 23215725 GANGSTR_439436 TTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23215725;END=23215740;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2544 chr21 23226464 GANGSTR_439437 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23226464;END=23226478;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2545 chr21 23233571 GANGSTR_439438 ACACACACACACACACAC ACACACACACACACACACAC . . INFRAME_PGEOM=0.96;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23233571;END=23233588;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:60:0:0:1:32.80|27.20:0|0:14.92:-0.43:45:-0.43:-19|1;0|25;2|18:0|22;2|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2546 chr21 23236193 GANGSTR_439439 ACAACAACAACAACAACAACAACAACAACAACAACAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=23236193;END=23236231;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:1:26.50|26.50:0|0:.:0:.:0:0|23:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2547 chr21 23243638 GANGSTR_439440 ATTATTATTATTATTATTATTATTATTATT ATTATTATTATTATTATTATTATTATTATTATTATT . . INFRAME_PGEOM=0.86;INFRAME_UP=0.08;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=23243638;END=23243667;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=6;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|6:1:0.5:41:0:0:0:23.54|17.46:0|0:5.42:-0.51:24:-0.39:-6|1;-4|1;-3|1;0|8;6|2:0|7;6|2:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2548 chr21 23244079 GANGSTR_439441 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23244079;END=23244090;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2549 chr21 23247793 GANGSTR_439442 TCAAATCAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23247793;END=23247802;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2550 chr21 23256947 GANGSTR_439443 ATACATACATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23256947;END=23256958;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2551 chr21 23258835 GANGSTR_439444 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23258835;END=23258846;PERIOD=3;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|34:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2552 chr21 23265432 GANGSTR_439446 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23265432;END=23265443;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:1:36.39|29.61:0|0:.:0:.:0:-7|1;0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2553 chr21 23278216 GANGSTR_439447 GTTTATGTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23278216;END=23278227;PERIOD=6;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2554 chr21 23282206 GANGSTR_439448 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23282206;END=23282217;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2555 chr21 23284821 GANGSTR_439450 CACACACACACACACACACACACACACACACACACACACACACA . . . INFRAME_PGEOM=0.99;INFRAME_UP=0.04;INFRAME_DOWN=0.16;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=23284821;END=23284864;PERIOD=2;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=2;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:2:2:20.50|20.50:0|0:.:0:.:0:-2|2;0|18:-2|2;0|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2556 chr21 23287621 GANGSTR_439451 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23287621;END=23287632;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:1:22.00|22.00:0|0:.:0:.:0:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2557 chr21 23293605 GANGSTR_439452 ATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23293605;END=23293612;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2558 chr21 23297556 GANGSTR_439453 TATATATATATATA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23297556;END=23297569;PERIOD=2;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:1:1:23.00|23.00:0|0:.:0:.:0:-2|1;0|35:-2|1;0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2559 chr21 23303161 GANGSTR_439454 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23303161;END=23303192;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=50;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:50:0:1:1:25.00|25.00:0|0:9.78:0:.:0:0|2;2|1;4|31:2|1;4|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2560 chr21 23303456 GANGSTR_439455 TGTGTGTGTGTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23303456;END=23303467;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:1:0:25.00|25.00:0|0:.:0:.:0:-2|1;0|37:-2|1;0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2561 chr21 23304301 GANGSTR_439456 TAAAATAAAATAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23304301;END=23304315;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2562 chr21 23314165 GANGSTR_439458 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23314165;END=23314176;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2563 chr21 23319170 GANGSTR_439459 TGAATTGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23319170;END=23319179;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2564 chr21 23319682 GANGSTR_439460 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23319682;END=23319693;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:1:23.50|23.50:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2565 chr21 23323023 GANGSTR_439461 TTTGTTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23323023;END=23323046;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2566 chr21 23325244 GANGSTR_439462 CTCTCTCTCTCT CTATCTCTCTCT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23325244;END=23325255;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:58:0:0:0:29.00|29.00:0|0:14.71:0:.:0:0|44:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2567 chr21 23328392 GANGSTR_439463 AACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23328392;END=23328406;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2568 chr21 23329421 GANGSTR_439464 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23329421;END=23329430;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:1:24.50|24.50:0|0:.:0:.:0:-1|1;0|39:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2569 chr21 23330854 GANGSTR_439465 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23330854;END=23330865;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2570 chr21 23332016 GANGSTR_439466 AATTAATTAATTAATT AATTAATTAATTAATTAATT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23332016;END=23332031;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:67:0:0:0:33.50|33.50:0|0:13.69:0:.:0:-24|1;-16|1;4|42:4|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2571 chr21 23336838 GANGSTR_439467 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=23336838;END=23336849;PERIOD=3;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:0:19.50|19.50:0|0:.:0:.:0:0|24:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2572 chr21 23338053 GANGSTR_439468 GTTTTTGTTTTTGTTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23338053;END=23338070;PERIOD=6;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2573 chr21 23346729 GANGSTR_439469 AACAACAAC AACAACGAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23346729;END=23346737;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:53:0:0:0:26.50|26.50:0|0:14.44:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2574 chr21 23347188 GANGSTR_439470 ACATACATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23347188;END=23347199;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2575 chr21 23349601 GANGSTR_439471 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23349601;END=23349612;PERIOD=3;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|52:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2576 chr21 23350692 GANGSTR_439472 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23350692;END=23350703;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2577 chr21 23352980 GANGSTR_439473 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23352980;END=23352991;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.00|31.00:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2578 chr21 23367124 GANGSTR_439475 TATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.96;INFRAME_UP=0.08;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=23367126;END=23367163;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,0;DP=63;DSNP=0;DSTUTTER=4;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|0:1:0.5:63:0:4:1:32.34|30.66:0|0:5.03:-0.07:28:-0.35:-4|2;-2|11;0|10:-4|3;-2|7;0|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2579 chr21 23370599 GANGSTR_439476 TGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23370599;END=23370612;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|47:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2580 chr21 23381125 GANGSTR_439477 AATAAATAAATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23381125;END=23381144;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2581 chr21 23394448 GANGSTR_439478 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23394448;END=23394459;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2582 chr21 23395279 GANGSTR_439479 ACAAACAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23395279;END=23395290;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|56:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2583 chr21 23397613 GANGSTR_439480 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23397613;END=23397628;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2584 chr21 23405795 GANGSTR_439481 ATTAAATTAAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23405795;END=23405809;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2585 chr21 23409541 GANGSTR_439482 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23409541;END=23409552;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2586 chr21 23411024 GANGSTR_439483 TTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=23411024;END=23411031;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|24:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2587 chr21 23414094 GANGSTR_439484 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23414094;END=23414105;PERIOD=4;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:0:1:40.00|40.00:0|0:.:0:.:0:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2588 chr21 23420806 GANGSTR_439485 ACATACATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23420806;END=23420817;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2589 chr21 23424074 GANGSTR_439487 CTTTTCTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23424074;END=23424083;PERIOD=5;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2590 chr21 23424730 GANGSTR_439488 TTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23424730;END=23424737;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:1:0:24.50|24.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2591 chr21 23431450 GANGSTR_439489 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23431450;END=23431461;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2592 chr21 23433315 GANGSTR_439490 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23433315;END=23433326;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2593 chr21 23441330 GANGSTR_439491 ATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23441330;END=23441345;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2594 chr21 23441601 GANGSTR_439492 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23441601;END=23441610;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:19.00|40.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2595 chr21 23447965 GANGSTR_439493 TTCTTTCTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23447965;END=23447976;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2596 chr21 23449453 GANGSTR_439494 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23449453;END=23449464;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|56:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2597 chr21 23454637 GANGSTR_439496 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23454637;END=23454648;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2598 chr21 23456607 GANGSTR_439497 CTCCTCCTCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23456607;END=23456618;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|48:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2599 chr21 23458437 GANGSTR_439498 TAGATAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23458437;END=23458444;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2600 chr21 23460311 GANGSTR_439499 CTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23460311;END=23460322;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2601 chr21 23462162 GANGSTR_439500 TTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23462162;END=23462181;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|36:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2602 chr21 23467890 GANGSTR_439501 TTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23467890;END=23467909;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|27:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2603 chr21 23475195 GANGSTR_439502 TCCACATCCACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23475195;END=23475206;PERIOD=6;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2604 chr21 23489113 GANGSTR_439503 TATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23489113;END=23489126;PERIOD=2;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|31:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2605 chr21 23490109 GANGSTR_439504 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23490109;END=23490120;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:25.50|18.50:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2606 chr21 23493144 GANGSTR_439505 TGGCTGGCTGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23493144;END=23493155;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2607 chr21 23496360 GANGSTR_439506 ATTAAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23496360;END=23496369;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2608 chr21 23504085 GANGSTR_439507 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23504085;END=23504100;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2609 chr21 23511076 GANGSTR_439508 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23511076;END=23511087;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:-21|1;0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2610 chr21 23511685 GANGSTR_439509 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23511685;END=23511696;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2611 chr21 23513906 GANGSTR_439510 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23513906;END=23513917;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|34:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2612 chr21 23527820 GANGSTR_439511 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23527820;END=23527831;PERIOD=4;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:0:38.50|38.50:0|0:.:0:.:0:0|54:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2613 chr21 23532311 GANGSTR_439512 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23532311;END=23532325;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2614 chr21 23533451 GANGSTR_439513 GCAAGCAAGCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23533451;END=23533462;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2615 chr21 23534334 GANGSTR_439514 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23534334;END=23534345;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2616 chr21 23534501 GANGSTR_439515 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23534501;END=23534512;PERIOD=2;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|49:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2617 chr21 23545107 GANGSTR_439516 TTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23545107;END=23545118;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2618 chr21 23545801 GANGSTR_439517 ATATATATATATATATATAT ATATATATATATATATAT . . INFRAME_PGEOM=0.99;INFRAME_UP=0.11;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23545801;END=23545820;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=60;DSNP=0;DSTUTTER=3;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:60:0:3:1:30.00|30.00:0|0:10.12:0:.:0:-4|1;-2|37;0|4:-4|1;-2|39;0|2:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2619 chr21 23550690 GANGSTR_439518 TTTACTTTAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23550690;END=23550699;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2620 chr21 23552906 GANGSTR_439519 TTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23552906;END=23552915;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2621 chr21 23554852 GANGSTR_439520 CAGACAGACAGACAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23554852;END=23554867;PERIOD=4;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2622 chr21 23563766 GANGSTR_439521 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23563766;END=23563777;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2623 chr21 23570058 GANGSTR_439522 CTGTTCTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23570058;END=23570067;PERIOD=5;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2624 chr21 23578688 GANGSTR_439523 AATCAAATCAAATCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23578688;END=23578702;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2625 chr21 23583535 GANGSTR_439524 TTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=23583535;END=23583544;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:-1|1;0|50:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2626 chr21 23584749 GANGSTR_439525 TGTATGTATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23584749;END=23584760;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2627 chr21 23586416 GANGSTR_439526 AGAAGAAGAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23586416;END=23586427;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2628 chr21 23592073 GANGSTR_439527 ATAAAATAAA ATAAATTAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.03;START=23592073;END=23592082;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:53:0:0:1:25.07|27.93:0|0:75.93:-0.11:51:-0.24:0|29;1|1:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2629 chr21 23593358 GANGSTR_439528 AAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23593358;END=23593367;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2630 chr21 23596381 GANGSTR_439529 TGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23596381;END=23596394;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:37.06|24.94:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2631 chr21 23596520 GANGSTR_439530 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23596520;END=23596531;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2632 chr21 23597931 GANGSTR_439531 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23597931;END=23597942;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2633 chr21 23601345 GANGSTR_439532 AGATAGATAGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23601345;END=23601356;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2634 chr21 23605962 GANGSTR_439533 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23605962;END=23605973;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2635 chr21 23615176 GANGSTR_439534 AATATAATATAATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23615176;END=23615190;PERIOD=5;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2636 chr21 23615573 GANGSTR_439535 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23615573;END=23615584;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2637 chr21 23619190 GANGSTR_439536 CAATTCAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23619190;END=23619199;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2638 chr21 23629020 GANGSTR_439537 ATCATCATCATCATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23629020;END=23629034;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|51:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2639 chr21 23631475 GANGSTR_439538 AATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23631475;END=23631484;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2640 chr21 23635026 GANGSTR_439539 TATATATATATATA TATATATATATATT,TATATATATATATATA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23635026;END=23635039;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0,2;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:0|2:1:0.5:65:0:0:0:33.50|31.50:0|0:34.4:-0.05:54:0:0|26;1|1;2|18:0|17;2|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2641 chr21 23635877 GANGSTR_439540 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23635877;END=23635888;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2642 chr21 23636302 GANGSTR_439541 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23636302;END=23636317;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2643 chr21 23654205 GANGSTR_439544 TTCTTCTTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23654205;END=23654216;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|47:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2644 chr21 23654781 GANGSTR_439545 ATTCTCTCTCTCTCTCTCTCTCTCTCTC ACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23654783;END=23654808;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=8;DP=76;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|8:1:0.5:76:0:2:1:35.64|40.36:0|0:262.56:-0.22:61:-0.1:0|17;4|2;6|3;8|18:0|16;6|2;8|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2645 chr21 23658593 GANGSTR_439546 CAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=23658593;END=23658607;PERIOD=5;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|20:0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2646 chr21 23663507 GANGSTR_439547 CATACATACATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23663507;END=23663518;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2647 chr21 23664868 GANGSTR_439548 TTTATTTATTTATTTATTTAT TTTATTTATTTATTTATTTAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23664868;END=23664887;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:78:0:0:1:40.00|38.00:0|0:113.84:-0.04:78:-0.92:-14|1;0|50:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2648 chr21 23665355 GANGSTR_439549 AAAGAAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23665355;END=23665370;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2649 chr21 23677838 GANGSTR_439551 TTATTTTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23677838;END=23677852;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2650 chr21 23678758 GANGSTR_439552 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23678758;END=23678769;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2651 chr21 23680481 GANGSTR_439553 GAGGAGGAGGAGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23680481;END=23680495;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2652 chr21 23690924 GANGSTR_439554 AATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23690924;END=23690932;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|48:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2653 chr21 23691470 GANGSTR_439555 AACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23691470;END=23691478;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2654 chr21 23693044 GANGSTR_439556 TATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.91;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=23693046;END=23693103;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-20,-16;DP=68;DSNP=0;DSTUTTER=3;DFLANKINDEL=3;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 2|1:-16|-20:1:0.5:68:0:3:3:30.83|37.17:0|0:15.94:-0.53:33:-0.53:-20|15;-18|4;-16|12;-14|1:-22|1;-20|15;-18|1;-16|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2655 chr21 23698136 GANGSTR_439557 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23698136;END=23698147;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2656 chr21 23700370 GANGSTR_439558 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23700370;END=23700381;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2657 chr21 23700602 GANGSTR_439559 TCTTTTCTTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23700602;END=23700616;PERIOD=5;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2658 chr21 23701965 GANGSTR_439560 TTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=23701965;END=23701980;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2659 chr21 23704218 GANGSTR_439561 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23704218;END=23704229;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|35:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2660 chr21 23704461 GANGSTR_439562 TTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23704461;END=23704475;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2661 chr21 23710993 GANGSTR_439563 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23710993;END=23711004;PERIOD=2;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:2:20.50|20.50:0|0:.:0:.:0:-2|1;0|33;3|1:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2662 chr21 23712374 GANGSTR_439564 ACTCACTCACTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23712374;END=23712385;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2663 chr21 23715480 GANGSTR_439565 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23715480;END=23715491;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2664 chr21 23722891 GANGSTR_439566 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23722891;END=23722902;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:21.01|36.99:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2665 chr21 23728306 GANGSTR_439567 GGAGGAGGAGGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23728306;END=23728320;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2666 chr21 23729302 GANGSTR_439568 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23729302;END=23729316;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2667 chr21 23738442 GANGSTR_439569 TATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23738442;END=23738451;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:27.47|32.53:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2668 chr21 23744265 GANGSTR_439570 ATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23744265;END=23744274;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2669 chr21 23745094 GANGSTR_439571 TATAATATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23745094;END=23745103;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2670 chr21 23751756 GANGSTR_439572 AAGAAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23751756;END=23751765;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2671 chr21 23755609 GANGSTR_439573 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23755609;END=23755620;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2672 chr21 23758378 GANGSTR_439574 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.94;INFRAME_UP=0.09;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=23758378;END=23758419;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,2;DP=65;DSNP=0;DSTUTTER=2;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|2:1:0.5:65:0:2:2:29.38|35.62:0|0:9.04:-0.67:32:-0.56:-4|1;-2|10;0|3;2|14:-4|1;-2|7;0|1;2|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2673 chr21 23759898 GANGSTR_439575 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23759898;END=23759909;PERIOD=3;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2674 chr21 23761457 GANGSTR_439576 ATTTATTTATTTATTTATTT ATTGATTTATTTATTTATTTATTT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.04;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23761457;END=23761476;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:61:0:0:0:29.24|31.76:0|0:31.95:-0.05:50:-0.41:-11|1;0|21;4|17:0|21;4|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2675 chr21 23764644 GANGSTR_439577 TAAATGTAAATGTAAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23764644;END=23764661;PERIOD=6;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|40:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2676 chr21 23766520 GANGSTR_439578 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23766520;END=23766531;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2677 chr21 23770406 GANGSTR_439580 TGTGTGTGTGTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23770406;END=23770417;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:2:0:31.00|31.00:0|0:.:0:.:0:0|39;2|1:0|33;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2678 chr21 23772386 GANGSTR_439581 TTGTTTAATAATAATAA TGGTTTAATAATAATAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23772391;END=23772402;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:60:0:0:1:30.00|30.00:0|0:15.95:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2679 chr21 23775068 GANGSTR_439582 CAAACCAAACCAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23775068;END=23775082;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2680 chr21 23776601 GANGSTR_439583 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23776601;END=23776612;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2681 chr21 23779492 GANGSTR_439584 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23779492;END=23779503;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2682 chr21 23782101 GANGSTR_439585 CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT CCTTCCTTCCTTCCTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=23782101;END=23782152;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:71:0:0:0:35.50|35.50:0|0:14.11:0:.:0:0|5;2|1;4|13:4|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2683 chr21 23782423 GANGSTR_439586 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=23782423;END=23782434;PERIOD=2;NSKIP=0;NFILT=0;DP=21;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:21:0:0:0:10.50|10.50:0|0:.:0:.:0:0|18:0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2684 chr21 23784748 GANGSTR_439587 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23784748;END=23784759;PERIOD=2;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|54:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2685 chr21 23785348 GANGSTR_439588 ATAAAATAAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23785348;END=23785362;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2686 chr21 23786585 GANGSTR_439589 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23786585;END=23786596;PERIOD=2;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2687 chr21 23787492 GANGSTR_439590 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23787492;END=23787503;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2688 chr21 23789683 GANGSTR_439591 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23789683;END=23789694;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|53:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2689 chr21 23791299 GANGSTR_439592 TTAATTTTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23791299;END=23791310;PERIOD=6;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|36:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2690 chr21 23792639 GANGSTR_439593 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23792639;END=23792650;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|27:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2691 chr21 23793066 GANGSTR_439594 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23793066;END=23793080;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2692 chr21 23800681 GANGSTR_439595 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23800681;END=23800692;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2693 chr21 23803406 GANGSTR_439596 TTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23803406;END=23803415;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2694 chr21 23803883 GANGSTR_439597 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23803883;END=23803894;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:1:25.50|25.50:0|0:.:0:.:0:0|40:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2695 chr21 23804173 GANGSTR_439598 ATTTTATTTTATTTTATTTT ATTTTATTTTATTTTATTTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23804173;END=23804192;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=1;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:1|1:1:1:66:0:0:0:33.00|33.00:0|0:13.85:0:.:0:-12|1;1|33:1|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2696 chr21 23811768 GANGSTR_439599 TTAATTAATTAA TTAATTAATTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23811768;END=23811779;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:68:0:0:0:34.01|33.99:0|0:100.4:0:62:-0.22:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2697 chr21 23815443 GANGSTR_439600 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23815443;END=23815457;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2698 chr21 23817779 GANGSTR_439601 TCTCTCTCTCTCTCTCTT TCTCTCTCTCTCTC . . INFRAME_PGEOM=0.87;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23817779;END=23817794;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=59;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:59:0:2:0:33.97|25.03:0|0:46.56:-0.58:51:-0.39:-6|1;-4|15;-2|1;0|22:-6|1;-4|18;-2|1;0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2699 chr21 23822591 GANGSTR_439602 AAGAGAAAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23822591;END=23822602;PERIOD=6;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|35:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2700 chr21 23824205 GANGSTR_439603 CTTCTTCTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23824205;END=23824216;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:1:26.50|26.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2701 chr21 23827485 GANGSTR_439604 AGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23827485;END=23827493;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2702 chr21 23832435 GANGSTR_439605 GTAAGTAAGTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23832435;END=23832446;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2703 chr21 23833450 GANGSTR_439606 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23833450;END=23833461;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:2:26.50|26.50:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2704 chr21 23835013 GANGSTR_439608 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23835013;END=23835028;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2705 chr21 23836237 GANGSTR_439609 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23836237;END=23836248;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2706 chr21 23837207 GANGSTR_439610 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23837207;END=23837218;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:1:33.00|33.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2707 chr21 23838937 GANGSTR_439611 GATAGATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23838937;END=23838944;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:1:36.00|36.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2708 chr21 23839694 GANGSTR_439612 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23839694;END=23839705;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2709 chr21 23839995 GANGSTR_439613 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23839995;END=23840006;PERIOD=3;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|34:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2710 chr21 23840408 GANGSTR_439614 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23840408;END=23840419;PERIOD=2;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2711 chr21 23840714 GANGSTR_439615 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23840714;END=23840729;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2712 chr21 23846475 GANGSTR_439616 ATACATACATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23846475;END=23846486;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2713 chr21 23849079 GANGSTR_439617 AAATTAAATTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23849079;END=23849093;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2714 chr21 23856057 GANGSTR_439618 TTTAATTTAATTTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23856057;END=23856071;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2715 chr21 23862852 GANGSTR_439619 ATATATATATAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23862852;END=23862863;PERIOD=2;NSKIP=0;NFILT=0;DP=35;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:1:0:17.50|17.50:0|0:.:0:.:0:-2|1;0|26:-2|1;0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2716 chr21 23863433 GANGSTR_439620 ACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23863433;END=23863444;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:1:0:27.00|27.00:0|0:.:0:.:0:-2|1;0|41:-2|1;0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2717 chr21 23864317 GANGSTR_439621 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23864317;END=23864336;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2718 chr21 23864470 GANGSTR_439622 CACACACACACACACACACACACACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23864470;END=23864503;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:1:1:29.00|29.00:0|0:.:0:.:0:-4|1;0|24:-2|1;0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2719 chr21 23865324 GANGSTR_439623 TGTATGTATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23865324;END=23865335;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2720 chr21 23868722 GANGSTR_439624 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23868722;END=23868733;PERIOD=4;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2721 chr21 23872573 GANGSTR_439625 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23872573;END=23872587;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2722 chr21 23874887 GANGSTR_439626 AATAAAATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23874887;END=23874901;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2723 chr21 23882630 GANGSTR_439627 ATTTTTATTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23882630;END=23882641;PERIOD=6;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|35:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2724 chr21 23886816 GANGSTR_439628 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23886816;END=23886827;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2725 chr21 23893063 GANGSTR_439629 GTTGTTGTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=23893063;END=23893074;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:3:29.50|29.50:0|0:.:0:.:0:-1|1;0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2726 chr21 23895305 GANGSTR_439630 CAAAAACAAAAACAAAAACAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.07;START=23895305;END=23895328;PERIOD=6;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:-1|1;0|23:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2727 chr21 23898656 GANGSTR_439631 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23898656;END=23898665;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2728 chr21 23902197 GANGSTR_439632 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23902197;END=23902208;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:2:31.50|31.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2729 chr21 23905319 GANGSTR_439633 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23905319;END=23905334;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|26:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2730 chr21 23914297 GANGSTR_439634 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23914297;END=23914308;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2731 chr21 23916057 GANGSTR_439635 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.06;START=23916057;END=23916072;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:1:1:28.50|28.50:0|0:.:0:.:0:-1|1;0|28:-4|1;0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2732 chr21 23917235 GANGSTR_439636 CAACAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23917235;END=23917249;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2733 chr21 23918781 GANGSTR_439637 TTGTTTTGTTTTGTTTTGTTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23918781;END=23918805;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2734 chr21 23932605 GANGSTR_439639 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23932605;END=23932616;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2735 chr21 23942747 GANGSTR_439640 GTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23942747;END=23942762;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:6|6:1:1:58:0:0:0:29.00|29.00:0|0:12.93:0:.:0:-3|1;0|2;4|1;6|39:6|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2736 chr21 23946044 GANGSTR_439641 GTTTTGTTTTGTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23946044;END=23946058;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2737 chr21 23948241 GANGSTR_439643 AGAAAAGAAAAGAAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23948241;END=23948260;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2738 chr21 23950205 GANGSTR_439644 CTTTCTCTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23950205;END=23950216;PERIOD=6;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|34:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2739 chr21 23957245 GANGSTR_439645 GGGAGGGAGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23957245;END=23957256;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2740 chr21 23964784 GANGSTR_439646 CCTCACCTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23964784;END=23964793;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2741 chr21 23964958 GANGSTR_439647 CATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23964958;END=23964969;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2742 chr21 23973377 GANGSTR_439648 TAGTTTATAGTTTATAGTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=23973377;END=23973397;PERIOD=7;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|29:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2743 chr21 23977599 GANGSTR_439650 AAATTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23977599;END=23977608;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2744 chr21 23982181 GANGSTR_439651 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23982181;END=23982196;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2745 chr21 23986389 GANGSTR_439652 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23986389;END=23986400;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|56:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2746 chr21 23990235 GANGSTR_439653 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23990235;END=23990246;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2747 chr21 23993714 GANGSTR_439654 AAACAAAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23993714;END=23993733;PERIOD=5;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:1:38.00|38.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2748 chr21 23999196 GANGSTR_439656 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=23999196;END=23999210;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2749 chr21 24008649 GANGSTR_439657 GGCAAAACAAAACAAAACAAAA GCAAAACAAAACAAAACAAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.02;START=24008651;END=24008670;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-1|-1:1:1:64:0:0:0:32.00|32.00:0|0:15.65:0:.:0:-1|37;0|1:-1|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2750 chr21 24011635 GANGSTR_439659 CACACACACACACACACACACACACACACACACACACACACA CACACACACACACACACACACACACACACACACACACACACACACACA . . INFRAME_PGEOM=0.92;INFRAME_UP=0.06;INFRAME_DOWN=0.17;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=24011635;END=24011676;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6;DP=58;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|6:1:0.5:58:0:2:1:30.28|27.72:0|0:19.32:-0:23:-0.17:-4|5;-2|3;0|9;6|4:-2|2;0|8;6|3:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2751 chr21 24013657 GANGSTR_439660 TGAATGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24013657;END=24013672;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:32.00|26.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2752 chr21 24021294 GANGSTR_439662 TATGTATGTATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24021294;END=24021305;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2753 chr21 24023384 GANGSTR_439663 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.94;INFRAME_UP=0.12;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=24023384;END=24023429;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-8,-6;DP=55;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-8|-6:0.99:0.5:55:0:1:1:29.03|25.97:0|0:2.15:-0.27:24:-0.17:-10|1;-8|13;-6|6;-4|1:-8|12;-6|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2754 chr21 24032528 GANGSTR_439665 CAACAACAACAA CAACAACAGCAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24032528;END=24032539;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:47:0:0:0:26.45|20.55:0|0:69.43:-0.35:44:-1.45:0|33:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2755 chr21 24038183 GANGSTR_439666 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24038183;END=24038194;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2756 chr21 24039075 GANGSTR_439667 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24039075;END=24039086;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2757 chr21 24065778 GANGSTR_439669 TCTTTCTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24065778;END=24065789;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2758 chr21 24074007 GANGSTR_439670 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24074007;END=24074018;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2759 chr21 24077607 GANGSTR_439671 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=24077607;END=24077621;PERIOD=5;NSKIP=0;NFILT=0;DP=27;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:27:0:0:0:13.50|13.50:0|0:.:0:.:0:0|13:0|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2760 chr21 24079316 GANGSTR_439672 AAAACAAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24079316;END=24079340;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2761 chr21 24082337 GANGSTR_439673 CACACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24082337;END=24082350;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2762 chr21 24085778 GANGSTR_439674 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24085778;END=24085792;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2763 chr21 24092615 GANGSTR_439675 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24092615;END=24092626;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2764 chr21 24093432 GANGSTR_439676 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=24093432;END=24093443;PERIOD=4;NSKIP=0;NFILT=0;DP=26;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:26:0:0:1:13.00|13.00:0|0:.:0:.:0:0|14:0|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2765 chr21 24093888 GANGSTR_439677 ATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24093888;END=24093902;PERIOD=3;NSKIP=0;NFILT=0;DP=35;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:0:0:17.50|17.50:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2766 chr21 24094037 GANGSTR_439678 TTATTATTATTATTATTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=24094037;END=24094066;PERIOD=3;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|18:0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2767 chr21 24096051 GANGSTR_439679 ATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24096051;END=24096065;PERIOD=3;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|51:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2768 chr21 24104018 GANGSTR_439680 CAAACAAACAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24104018;END=24104041;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2769 chr21 24108030 GANGSTR_439681 CAACAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24108030;END=24108044;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2770 chr21 24118032 GANGSTR_439684 ATATATATATATATAT ATATATATATATATCT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=24118032;END=24118047;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=22;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:22:0:0:0:11.00|11.00:0|0:6.3:0:.:0:0|15:0|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2771 chr21 24118912 GANGSTR_439685 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24118912;END=24118923;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2772 chr21 24119566 GANGSTR_439686 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24119566;END=24119581;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2773 chr21 24126218 GANGSTR_439687 AATAAATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=24126218;END=24126233;PERIOD=4;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|21:0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2774 chr21 24127431 GANGSTR_439688 TCAATTCAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24127431;END=24127440;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2775 chr21 24132203 GANGSTR_439689 AGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=24132203;END=24132242;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:1:0:30.00|30.00:0|0:.:0:.:0:0|13:0|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2776 chr21 24133524 GANGSTR_439690 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24133524;END=24133538;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2777 chr21 24147079 GANGSTR_439691 ATAAATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24147079;END=24147094;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2778 chr21 24150694 GANGSTR_439692 TATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=24150694;END=24150703;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:1:1:32.50|32.50:0|0:.:0:.:0:-1|1;0|45:-5|1;0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2779 chr21 24152589 GANGSTR_439693 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24152589;END=24152600;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|46:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2780 chr21 24155848 GANGSTR_439694 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24155848;END=24155859;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2781 chr21 24157571 GANGSTR_439695 TGTTTGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24157571;END=24157586;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2782 chr21 24165912 GANGSTR_439696 AAAATTCAAAATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24165912;END=24165925;PERIOD=7;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|44:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2783 chr21 24170828 GANGSTR_439698 TGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24170828;END=24170843;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2784 chr21 24172660 GANGSTR_439699 TTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24172660;END=24172669;PERIOD=5;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2785 chr21 24180313 GANGSTR_439700 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGC . . INFRAME_PGEOM=0.98;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24180313;END=24180346;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=56;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:56:0:2:0:29.99|26.01:0|0:59.22:-0.16:56:-0.36:-2|1;0|23;2|1:-2|1;0|20;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2786 chr21 24184266 GANGSTR_439701 TAAAATAAAA TAAAA . . INFRAME_PGEOM=0.97;INFRAME_UP=0.04;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24184266;END=24184275;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-5;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-5:1:0.5:55:0:0:0:26.59|28.41:0|0:24.83:-0.11:49:0:-5|24;0|17:-5|25;0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2787 chr21 24188562 GANGSTR_439702 CAAACAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24188562;END=24188581;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2788 chr21 24190280 GANGSTR_439703 AGAGAGAGAGAGA AGAGAGAGAGAGAGAG . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.96;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.02;START=24190280;END=24190291;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=3;DP=64;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|3:1:0.5:64:0:1:1:26.82|37.18:0|0:116.92:-0.75:55:-0.11:-19|1;0|18;1|2;3|29:0|18;1|1;3|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2789 chr21 24197512 GANGSTR_439704 TATATATATATATATATATATATATATATA TATATATATATATATA . . INFRAME_PGEOM=0.94;INFRAME_UP=0.05;INFRAME_DOWN=0.13;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=24197512;END=24197541;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-14;DP=39;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-14:1:0.5:39:0:2:0:14.53|24.47:0|0:56.05:-0.83:31:-0.56:-16|1;-14|18;-2|1;0|5:-16|1;-14|14;-2|1;0|4:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2790 chr21 24197683 GANGSTR_439705 ACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACATACAC . . INFRAME_PGEOM=0.94;INFRAME_UP=0.04;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=24197683;END=24197712;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=8;DP=42;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|8:1:0.5:42:0:2:1:20.99|21.01:0|0:64.86:0:30:-1.6:-13|1;-11|1;-2|1;0|12;3|1;6|1;8|10:-2|1;0|11;6|1;8|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2791 chr21 24198945 GANGSTR_439706 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24198945;END=24198959;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:36.50|30.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2792 chr21 24199462 GANGSTR_439707 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24199462;END=24199473;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2793 chr21 24204391 GANGSTR_439708 GAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24204391;END=24204398;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2794 chr21 24209351 GANGSTR_439709 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24209351;END=24209362;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:33.00|30.00:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2795 chr21 24213226 GANGSTR_439710 ATACATACATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24213226;END=24213237;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2796 chr21 24217945 GANGSTR_439711 ATATATATATATATATAT ATATATATATATATATATAT . . INFRAME_PGEOM=0.93;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24217945;END=24217962;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=64;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:64:0:1:1:37.20|26.80:0|0:12.83:-1.1:47:0:0|32;2|13:0|27;2|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2797 chr21 24222420 GANGSTR_439712 GTATGTATGTATGTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24222420;END=24222435;PERIOD=4;NSKIP=0;NFILT=0;DP=88;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:88:0:0:0:44.00|44.00:0|0:.:0:.:0:0|60:0|58:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2798 chr21 24228359 GANGSTR_439713 ATTAATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24228359;END=24228370;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|53:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2799 chr21 24228630 GANGSTR_439714 TTCTTTCTTTCTTTCTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24228630;END=24228649;PERIOD=4;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:0:38.50|38.50:0|0:.:0:.:0:0|45:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2800 chr21 24228834 GANGSTR_439715 AAATTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24228834;END=24228843;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2801 chr21 24231819 GANGSTR_439716 TGTTGTTGTTGTTGT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24231819;END=24231833;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:1:0:27.00|27.00:0|0:.:0:.:0:-3|1;0|43:-3|1;0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2802 chr21 24236416 GANGSTR_439717 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24236416;END=24236427;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.50|32.50:0|0:.:0:.:0:0|41:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2803 chr21 24245781 GANGSTR_439719 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24245781;END=24245792;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2804 chr21 24246126 GANGSTR_439720 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24246126;END=24246137;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2805 chr21 24251510 GANGSTR_439721 TAGATAGATAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=24251510;END=24251521;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:3:35.50|35.50:0|0:.:0:.:0:-1|1;0|50;14|1:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2806 chr21 24253718 GANGSTR_439722 TTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24253718;END=24253725;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2807 chr21 24254753 GANGSTR_439723 TAAATAAATAAA TAAATAAATGAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24254753;END=24254764;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:55:0:0:0:29.97|25.03:0|0:87.2:-0.23:53:-0.39:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2808 chr21 24255166 GANGSTR_439724 TGTTTGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24255166;END=24255181;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2809 chr21 24257440 GANGSTR_439725 ATACATACATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24257440;END=24257451;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2810 chr21 24257519 GANGSTR_439726 ACCAAACCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24257519;END=24257528;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2811 chr21 24257727 GANGSTR_439727 GTTGTTGTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24257727;END=24257738;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2812 chr21 24259918 GANGSTR_439729 AGAAAGAAAGAAGGGT AGAAAGAAAGAAGGGC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24259918;END=24259929;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:54:0:0:0:20.99|33.01:0|0:51.46:-0.98:46:-0.12:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2813 chr21 24261031 GANGSTR_439730 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24261031;END=24261042;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:1:35.00|35.00:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2814 chr21 24266298 GANGSTR_439731 ATATATATATATAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24266298;END=24266311;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:1:0:31.50|31.50:0|0:.:0:.:0:0|44;2|1:0|41;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2815 chr21 24266543 GANGSTR_439732 TTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24266543;END=24266554;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2816 chr21 24266920 GANGSTR_439733 ATTATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24266920;END=24266937;PERIOD=3;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|25:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2817 chr21 24268255 GANGSTR_439734 TCTGTTCTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24268255;END=24268264;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2818 chr21 24270784 GANGSTR_439735 TGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.96;INFRAME_UP=0.08;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24270784;END=24270807;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=50;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:50:0:1:0:24.03|25.97:0|0:6.34:-0.07:30:-0.56:-4|1;-2|13;0|15:-2|13;0|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2819 chr21 24275678 GANGSTR_439737 CACTCACTCACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24275678;END=24275689;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:25.00|31.00:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2820 chr21 24278424 GANGSTR_439738 ATATATATATATATATATATATT ATATATATATATATATATATT,ATATATATATATATATATATATA . . INFRAME_PGEOM=0.99;INFRAME_UP=0.08;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.68;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.08;START=24278424;END=24278445;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,0;DP=29;DSNP=0;DSTUTTER=3;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|0:1:0.5:29:0:3:1:11.04|17.96:0|0:7.29:-0.64:25:-0.17:-5|1;-4|1;-2|9;0|11:-4|1;-2|9;0|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2821 chr21 24280233 GANGSTR_439739 TATTCTATTCTATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24280233;END=24280247;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2822 chr21 24283674 GANGSTR_439740 ACAAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24283674;END=24283683;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2823 chr21 24284392 GANGSTR_439741 TACATACATACA TACATACATATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24284392;END=24284403;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:52:0:0:0:26.00|26.00:0|0:13.24:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2824 chr21 24285585 GANGSTR_439742 TATATATATATATA . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24285585;END=24285598;PERIOD=2;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:1:0:36.00|36.00:0|0:.:0:.:0:0|48;2|1:0|44;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2825 chr21 24291913 GANGSTR_439743 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24291913;END=24291924;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:1:34.50|34.50:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2826 chr21 24292334 GANGSTR_439744 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.02;START=24292334;END=24292343;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|43;1|1:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2827 chr21 24305734 GANGSTR_439745 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24305734;END=24305745;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2828 chr21 24307779 GANGSTR_439746 TATATATATATA . . . INFRAME_PGEOM=1;INFRAME_UP=0.07;INFRAME_DOWN=0.13;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=24307779;END=24307790;PERIOD=2;NSKIP=0;NFILT=0;DP=11;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:11:0:0:0:5.50|5.50:0|0:.:0:.:0:-2|1;0|9:0|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2829 chr21 24308230 GANGSTR_439748 TGTTTGTGTGTTTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=24308230;END=24308245;PERIOD=8;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:1:19.00|19.00:0|0:.:0:.:0:0|21:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2830 chr21 24308767 GANGSTR_439749 TTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24308767;END=24308776;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2831 chr21 24320336 GANGSTR_439750 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24320336;END=24320351;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2832 chr21 24324303 GANGSTR_439751 GTTGTTGTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24324303;END=24324314;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|46:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2833 chr21 24325143 GANGSTR_439752 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC . . INFRAME_PGEOM=0.71;INFRAME_UP=0.03;INFRAME_DOWN=0.23;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24325143;END=24325178;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=67;DSNP=0;DSTUTTER=5;DFLANKINDEL=3;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:67:0:5:3:33.50|33.50:0|0:6.39:0:.:0:-2|3;0|6;2|23:-2|2;0|2;2|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2834 chr21 24325808 GANGSTR_439753 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24325808;END=24325819;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2835 chr21 24327709 GANGSTR_439754 ACACACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24327709;END=24327724;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:1:0:30.00|30.00:0|0:.:0:.:0:-2|1;0|41:-2|1;0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2836 chr21 24332421 GANGSTR_439755 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24332421;END=24332432;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2837 chr21 24335967 GANGSTR_439756 AAACAAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24335967;END=24335990;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|28:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2838 chr21 24338111 GANGSTR_439757 AATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24338111;END=24338119;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2839 chr21 24338918 GANGSTR_439758 CAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24338918;END=24338932;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2840 chr21 24345544 GANGSTR_439759 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24345544;END=24345555;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2841 chr21 24347199 GANGSTR_439760 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24347199;END=24347210;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:1:0:33.50|33.50:0|0:.:0:.:0:0|48;3|1:0|45;3|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2842 chr21 24350073 GANGSTR_439762 ACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.96;INFRAME_UP=0.07;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24350073;END=24350110;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:43:0:0:0:23.44|19.56:0|0:4.98:-0.46:28:-0.16:0|17;2|9:0|15;2|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2843 chr21 24350693 GANGSTR_439763 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24350693;END=24350704;PERIOD=3;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2844 chr21 24358900 GANGSTR_439764 ATCAATCAATCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24358900;END=24358911;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2845 chr21 24358964 GANGSTR_439765 AATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24358964;END=24358971;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2846 chr21 24362174 GANGSTR_439766 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=24362174;END=24362188;PERIOD=5;NSKIP=0;NFILT=0;DP=34;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:34:0:0:0:17.00|17.00:0|0:.:0:.:0:0|19:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2847 chr21 24368522 GANGSTR_439767 CAACAACAACAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=24368522;END=24368542;PERIOD=3;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:1:1:24.00|24.00:0|0:.:0:.:0:-5|1;0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2848 chr21 24373220 GANGSTR_439768 AAATTAAATTAAATTAAATT AATTTAAATTAAATTAAATT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24373220;END=24373239;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:80:0:0:0:42.96|37.04:0|0:112.9:-0.26:70:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2849 chr21 24376610 GANGSTR_439769 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24376610;END=24376621;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:23.98|30.02:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2850 chr21 24378582 GANGSTR_439770 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24378582;END=24378593;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2851 chr21 24392836 GANGSTR_439771 AAATAAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.96;INFRAME_UP=0.23;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24392836;END=24392859;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=9;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:9:0:31.50|31.50:0|0:.:0:.:0:-2|1;0|20;4|6:0|19;4|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2852 chr21 24395107 GANGSTR_439772 ATTTTTTATTTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24395107;END=24395120;PERIOD=7;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=6;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|33:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2853 chr21 24396152 GANGSTR_439773 AATAGAATAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24396152;END=24396161;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2854 chr21 24399439 GANGSTR_439774 TCAAATCAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24399439;END=24399448;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:2:24.00|24.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2855 chr21 24400395 GANGSTR_439775 ACACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.97;INFRAME_UP=0.09;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=24400395;END=24400440;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4,-2;DP=50;DSNP=0;DSTUTTER=3;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|-2:1:0.5:50:0:3:1:27.81|22.19:0|0:2.45:-0.61:27:-0.16:-6|3;-4|13;-2|10:-6|2;-4|12;-2|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2856 chr21 24400972 GANGSTR_439776 AATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24400972;END=24400981;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2857 chr21 24402770 GANGSTR_439777 TTTATTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=24402770;END=24402793;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|21:0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2858 chr21 24407698 GANGSTR_439778 TATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24407698;END=24407705;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:29.50|30.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2859 chr21 24412657 GANGSTR_439779 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24412657;END=24412668;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2860 chr21 24413100 GANGSTR_439780 AACAAAACAAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24413100;END=24413114;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2861 chr21 24419873 GANGSTR_439781 TTTTCTTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24419873;END=24419887;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:-13|1;0|37:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2862 chr21 24421306 GANGSTR_439782 TTCTTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24421306;END=24421315;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2863 chr21 24421811 GANGSTR_439783 TCTTTTCTTT TATTTTCTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24421811;END=24421820;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:48:0:0:0:24.00|24.00:0|0:13.19:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2864 chr21 24422313 GANGSTR_439784 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24422313;END=24422324;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2865 chr21 24422892 GANGSTR_439785 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24422892;END=24422903;PERIOD=2;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|56:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2866 chr21 24423889 GANGSTR_439786 TTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24423889;END=24423904;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2867 chr21 24428647 GANGSTR_439788 ATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24428647;END=24428654;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2868 chr21 24431281 GANGSTR_439789 AAACCAAACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24431281;END=24431290;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2869 chr21 24447026 GANGSTR_439791 ATAAAATAAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24447026;END=24447040;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2870 chr21 24453833 GANGSTR_439792 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24453833;END=24453844;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2871 chr21 24454196 GANGSTR_439793 TTTCTTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24454196;END=24454211;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2872 chr21 24458152 GANGSTR_439794 AGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24458152;END=24458163;PERIOD=2;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:1:0:23.00|23.00:0|0:.:0:.:0:0|28:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2873 chr21 24467761 GANGSTR_439795 TTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=24467761;END=24467775;PERIOD=5;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|22:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2874 chr21 24472811 GANGSTR_439796 ATATATATATATAT . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24472811;END=24472824;PERIOD=2;NSKIP=0;NFILT=0;DP=84;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:84:0:1:1:42.00|42.00:0|0:.:0:.:0:-2|2;0|60:-2|1;0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2875 chr21 24480259 GANGSTR_439797 AAATTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24480259;END=24480268;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2876 chr21 24484069 GANGSTR_439798 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24484069;END=24484080;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2877 chr21 24484301 GANGSTR_439799 CTCTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24484301;END=24484314;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2878 chr21 24487620 GANGSTR_439800 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.98;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24487620;END=24487659;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-10;DP=55;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-10|-10:1:1:55:0:2:0:27.50|27.50:0|0:9.03:0:.:0:-12|1;-10|26;-8|1:-12|1;-10|26;-8|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2879 chr21 24488986 GANGSTR_439801 ATACATACATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24488986;END=24488997;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:1:32.00|32.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2880 chr21 24489158 GANGSTR_439802 ATACATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24489158;END=24489165;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2881 chr21 24489224 GANGSTR_439803 ATAGATAGATAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24489224;END=24489235;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2882 chr21 24490091 GANGSTR_439804 AAACCAAACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=24490091;END=24490100;PERIOD=5;NSKIP=0;NFILT=0;DP=90;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:90:0:0:0:45.00|45.00:0|0:.:0:.:0:0|65:0|65:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2883 chr21 24490523 GANGSTR_439805 AGCAAGCAAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24490523;END=24490534;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2884 chr21 24491155 GANGSTR_439806 TTGTTTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24491155;END=24491170;PERIOD=4;NSKIP=0;NFILT=0;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:78:0:0:0:39.00|39.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2885 chr21 24493463 GANGSTR_439807 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24493463;END=24493474;PERIOD=2;NSKIP=0;NFILT=0;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:36:0:0:1:18.00|18.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2886 chr21 24494538 GANGSTR_439808 ATTAAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24494538;END=24494547;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2887 chr21 24496001 GANGSTR_439809 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24496001;END=24496012;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|44:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2888 chr21 24497522 GANGSTR_439810 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24497522;END=24497533;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2889 chr21 24497701 GANGSTR_439811 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24497701;END=24497715;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2890 chr21 24501234 GANGSTR_439812 TATTTTGTTTTGTTTTGTTTTG TGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTG . . INFRAME_PGEOM=1;INFRAME_UP=0.06;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.94;OUTFRAME_UP=0.09;OUTFRAME_DOWN=0.03;START=24501236;END=24501255;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=10;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:10|10:1:1:63:0:0:0:31.50|31.50:0|0:16.23:0:.:0:-1|10;0|2;4|5;10|24:10|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2891 chr21 24507053 GANGSTR_439813 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24507053;END=24507064;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2892 chr21 24509979 GANGSTR_439814 GTGTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24509979;END=24509992;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2893 chr21 24517598 GANGSTR_439815 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24517598;END=24517609;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2894 chr21 24518985 GANGSTR_439816 TTATTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24518985;END=24519002;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:1:25.50|25.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2895 chr21 24521106 GANGSTR_439817 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24521106;END=24521117;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2896 chr21 24522241 GANGSTR_439818 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24522241;END=24522252;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|47:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2897 chr21 24524880 GANGSTR_439819 TGCTTGCTTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24524880;END=24524891;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2898 chr21 24525950 GANGSTR_439820 ATACATACATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24525950;END=24525961;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2899 chr21 24529000 GANGSTR_439821 TAAATTAAATTAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24529000;END=24529014;PERIOD=5;NSKIP=0;NFILT=0;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:78:0:0:1:39.00|39.00:0|0:.:0:.:0:0|55:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2900 chr21 24541380 GANGSTR_439822 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24541380;END=24541391;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2901 chr21 24543279 GANGSTR_439823 TATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24543279;END=24543292;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|42:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2902 chr21 24551889 GANGSTR_439826 TTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24551889;END=24551898;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2903 chr21 24556508 GANGSTR_439827 GAATTGAATTGAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24556508;END=24556522;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2904 chr21 24559937 GANGSTR_439828 TTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24559937;END=24559948;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2905 chr21 24567378 GANGSTR_439829 ATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24567378;END=24567386;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|49:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2906 chr21 24567573 GANGSTR_439830 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24567573;END=24567584;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|42:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2907 chr21 24571011 GANGSTR_439831 TAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT TTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.99;INFRAME_UP=0.03;INFRAME_DOWN=0.13;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24571013;END=24571046;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-10;DP=66;DSNP=0;DSTUTTER=5;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-10|-10:1:1:66:0:5:1:33.00|33.00:0|0:16.8:0:.:0:-16|1;-12|4;-10|31;0|1:-16|1;-12|4;-10|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2908 chr21 24571247 GANGSTR_439832 AACAACAACAAC AACAACAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24571247;END=24571258;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-3|-3:1:1:51:0:0:0:25.50|25.50:0|0:11.55:0:.:0:-3|36:-3|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2909 chr21 24573389 GANGSTR_439833 AATAAATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24573389;END=24573404;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2910 chr21 24577236 GANGSTR_439835 TTATTTTATTTTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=24577236;END=24577255;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2911 chr21 24581367 GANGSTR_439836 ATAATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24581367;END=24581381;PERIOD=3;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|26:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2912 chr21 24593583 GANGSTR_439837 TTGATTGATTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24593583;END=24593594;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2913 chr21 24595927 GANGSTR_439838 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24595927;END=24595938;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2914 chr21 24597866 GANGSTR_439839 TATATATATATA TATATATATATATATATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=24597866;END=24597877;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6;DP=33;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:6|6:1:1:33:0:0:0:16.50|16.50:0|0:6.62:0:.:0:-35|1;-7|2;-1|2;6|17:6|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2915 chr21 24613680 GANGSTR_439841 GTTTTTCTAGTTTTTCTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24613680;END=24613697;PERIOD=9;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|29:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2916 chr21 24614279 GANGSTR_439842 TGTGTGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.99;INFRAME_UP=0.03;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24614279;END=24614302;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=3;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:3:1:28.50|28.50:0|0:.:0:.:0:-2|3;0|31:-2|2;0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2917 chr21 24616298 GANGSTR_439843 ACTTACTTACTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24616298;END=24616309;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2918 chr21 24621706 GANGSTR_439844 ACTTACTTACTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24621706;END=24621717;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2919 chr21 24625265 GANGSTR_439845 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24625265;END=24625276;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:1:34.00|34.00:0|0:.:0:.:0:0|52:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2920 chr21 24636179 GANGSTR_439846 AGAGAGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24636179;END=24636194;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|38:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2921 chr21 24637001 GANGSTR_439847 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24637001;END=24637012;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2922 chr21 24638545 GANGSTR_439848 ACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.99;INFRAME_UP=0.03;INFRAME_DOWN=0.13;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24638545;END=24638578;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=58;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:58:0:1:2:29.00|29.00:0|0:7.92:0:.:0:-9|3;-2|1;0|4;1|1;2|24:0|1;2|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2923 chr21 24640312 GANGSTR_439849 CATCCCCATCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24640312;END=24640323;PERIOD=6;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2924 chr21 24641283 GANGSTR_439850 ACAACAACAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24641283;END=24641294;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2925 chr21 24645005 GANGSTR_439851 GTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24645005;END=24645010;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2926 chr21 24645397 GANGSTR_439852 ATATATATATATATAT ATATATATATATATATAT . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24645397;END=24645412;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=74;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:74:0:3:0:37.00|37.00:0|0:13.74:0:.:0:-4|1;0|3;2|50;4|1:0|2;2|45;4|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2927 chr21 24652315 GANGSTR_439853 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24652315;END=24652326;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2928 chr21 24654256 GANGSTR_439854 TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=24654256;END=24654299;PERIOD=4;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:1:0:38.00|38.00:0|0:.:0:.:0:-4|1;0|21:-4|1;0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2929 chr21 24655031 GANGSTR_439855 ATATAAATATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=24655031;END=24655042;PERIOD=6;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|22:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2930 chr21 24655156 GANGSTR_439856 TTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=24655156;END=24655165;PERIOD=5;NSKIP=0;NFILT=0;DP=33;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:33:0:0:0:16.50|16.50:0|0:.:0:.:0:0|19:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2931 chr21 24655758 GANGSTR_439857 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24655758;END=24655769;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2932 chr21 24665522 GANGSTR_439858 TTTATTTATTTA TTTATTTATTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24665522;END=24665533;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:66:0:0:0:33.00|33.00:0|0:16.85:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2933 chr21 24668999 GANGSTR_439859 GTGTGTGTGTGTGTGTGTGTGTGT . . . INFRAME_PGEOM=0.99;INFRAME_UP=0.03;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24668999;END=24669022;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:3:0:29.50|29.50:0|0:.:0:.:0:-2|3;0|28:-2|3;0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2934 chr21 24682199 GANGSTR_439861 ACAACAACAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24682199;END=24682210;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2935 chr21 24689646 GANGSTR_439862 ACACACACACACACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24689646;END=24689669;PERIOD=2;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:2:0:19.00|19.00:0|0:.:0:.:0:-2|1;0|24:-2|2;0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2936 chr21 24692614 GANGSTR_439863 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=24692614;END=24692623;PERIOD=5;NSKIP=0;NFILT=0;DP=85;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:85:0:0:0:42.50|42.50:0|0:.:0:.:0:0|63:0|63:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2937 chr21 24692845 GANGSTR_439864 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24692845;END=24692856;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2938 chr21 24702947 GANGSTR_439865 AGCAGCAGCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24702947;END=24702958;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|50:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2939 chr21 24704376 GANGSTR_439866 TATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24704376;END=24704385;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2940 chr21 24705659 GANGSTR_439867 GAAAGAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24705659;END=24705670;PERIOD=6;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|39:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2941 chr21 24707380 GANGSTR_439868 CTCTCTCTCTCT . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24707380;END=24707391;PERIOD=2;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:1:0:23.50|23.50:0|0:.:0:.:0:-2|1;0|34:-2|1;0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2942 chr21 24711274 GANGSTR_439869 CAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24711274;END=24711288;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2943 chr21 24711569 GANGSTR_439870 TATTATTATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24711569;END=24711586;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2944 chr21 24712992 GANGSTR_439871 CACACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24712992;END=24713005;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|40:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2945 chr21 24720250 GANGSTR_439872 ATATATATATATATATATATATAT ACATATATATATATATATAT,ATATATATATATATATATATATATAT . . INFRAME_PGEOM=0.96;INFRAME_UP=0.08;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=24720250;END=24720273;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4,2;DP=35;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|2:1:0.5:35:0:3:0:24.95|10.05:0|0:4.33:-2.59:23:-0.22:-6|1;-4|16;0|1;2|2;4|1:-6|1;-4|15;2|2;4|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2946 chr21 24720408 GANGSTR_439873 GTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.94;INFRAME_UP=0.04;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=24720408;END=24720431;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=10;DP=43;DSNP=0;DSTUTTER=5;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|10:1:0.5:43:0:5:1:20.48|22.52:0|0:72.84:-0.06:36:-0.49:-6|1;0|15;8|4;10|10:0|12;8|5;10|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2947 chr21 24729050 GANGSTR_439874 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24729050;END=24729064;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:33.50|27.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2948 chr21 24739977 GANGSTR_439875 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.08;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=24739977;END=24740012;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6,-4;DP=62;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-6|-4:1:0.5:62:0:1:2:31.19|30.81:0|0:6.85:-0:33:0:-6|12;-4|15:-6|12;-4|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2949 chr21 24743288 GANGSTR_439876 AAATAAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=24743288;END=24743311;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|19:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2950 chr21 24744783 GANGSTR_439877 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24744783;END=24744802;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2951 chr21 24749885 GANGSTR_439878 AATAATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24749885;END=24749902;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2952 chr21 24752673 GANGSTR_439879 ACACACACACAC . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24752673;END=24752684;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:2:1:24.06|31.94:0|0:.:0:.:0:-2|2;0|37:-2|2;0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2953 chr21 24756913 GANGSTR_439880 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.02;START=24756913;END=24756924;PERIOD=2;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:37.46|30.54:0|0:.:0:.:0:0|55:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2954 chr21 24758521 GANGSTR_439881 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24758521;END=24758532;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2955 chr21 24768544 GANGSTR_439882 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24768544;END=24768559;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2956 chr21 24775999 GANGSTR_439883 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.03;START=24775999;END=24776010;PERIOD=4;NSKIP=0;NFILT=0;DP=83;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:83:0:1:1:41.50|41.50:0|0:.:0:.:0:-1|1;0|60:-4|1;0|58:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2957 chr21 24778918 GANGSTR_439884 TGTATGTATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24778918;END=24778929;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2958 chr21 24779046 GANGSTR_439885 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24779046;END=24779057;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2959 chr21 24779777 GANGSTR_439886 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24779777;END=24779788;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2960 chr21 24781320 GANGSTR_439887 TTGTCTTGTCTTGTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24781320;END=24781334;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2961 chr21 24785922 GANGSTR_439888 ATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24785922;END=24785929;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2962 chr21 24792148 GANGSTR_439889 AATAAATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24792148;END=24792163;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2963 chr21 24794321 GANGSTR_439890 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24794321;END=24794332;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2964 chr21 24798118 GANGSTR_439892 TGGTGGTGGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24798118;END=24798129;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:25.00|28.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2965 chr21 24801448 GANGSTR_439894 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24801448;END=24801462;PERIOD=5;NSKIP=0;NFILT=0;DP=34;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:34:0:0:0:17.00|17.00:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2966 chr21 24803398 GANGSTR_439895 ACGTTTGTTTGTTTGTTT ATGTTTGTTTGTTTGTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24803400;END=24803415;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:62:0:0:0:33.01|28.99:0|0:79.4:-0.17:52:-1.84:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2967 chr21 24809530 GANGSTR_439896 AGAGAGAGAGAGAGAG . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.03;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24809530;END=24809545;PERIOD=2;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:2:0:25.50|20.50:0|0:.:0:.:0:-2|2;0|31:-2|2;0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2968 chr21 24811944 GANGSTR_439897 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24811944;END=24811955;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2969 chr21 24813855 GANGSTR_439898 TTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24813855;END=24813869;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:1:36.00|36.00:0|0:.:0:.:0:0|54:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2970 chr21 24814250 GANGSTR_439900 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24814250;END=24814261;PERIOD=2;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:1:0:22.00|22.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2971 chr21 24816159 GANGSTR_439901 AAATTAAATTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24816159;END=24816173;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2972 chr21 24817590 GANGSTR_439902 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24817590;END=24817601;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2973 chr21 24820920 GANGSTR_439903 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24820920;END=24820931;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2974 chr21 24821656 GANGSTR_439904 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24821656;END=24821667;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:1:26.50|26.50:0|0:.:0:.:0:0|35:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2975 chr21 24835472 GANGSTR_439905 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24835472;END=24835483;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2976 chr21 24837316 GANGSTR_439906 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.94;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=24837316;END=24837327;PERIOD=3;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:2:35.00|35.00:0|0:.:0:.:0:-1|2;0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2977 chr21 24838595 GANGSTR_439907 AAATAAAATAAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.05;START=24838595;END=24838609;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:-1|1;0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2978 chr21 24840711 GANGSTR_439908 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24840711;END=24840722;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2979 chr21 24841317 GANGSTR_439909 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24841317;END=24841328;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2980 chr21 24841732 GANGSTR_439910 ATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24841732;END=24841739;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2981 chr21 24843684 GANGSTR_439911 ATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24843684;END=24843697;PERIOD=2;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|28:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2982 chr21 24847205 GANGSTR_439912 TTAAATTAAATTAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24847205;END=24847219;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2983 chr21 24852797 GANGSTR_439914 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24852797;END=24852811;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2984 chr21 24856355 GANGSTR_439915 TTTAAATTTAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24856355;END=24856366;PERIOD=6;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2985 chr21 24856749 GANGSTR_439916 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24856749;END=24856760;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2986 chr21 24858117 GANGSTR_439917 ATAAATATAAATATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24858117;END=24858134;PERIOD=6;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2987 chr21 24865762 GANGSTR_439918 TATGTATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24865762;END=24865769;PERIOD=4;NSKIP=0;NFILT=0;DP=35;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:0:0:17.50|17.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2988 chr21 24865820 GANGSTR_439919 AGATAGATAGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=24865820;END=24865831;PERIOD=4;NSKIP=0;NFILT=0;DP=33;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:33:0:0:0:16.50|16.50:0|0:.:0:.:0:0|23:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2989 chr21 24873709 GANGSTR_439920 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24873709;END=24873728;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2990 chr21 24881195 GANGSTR_439921 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24881195;END=24881214;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:1:0:30.50|30.50:0|0:.:0:.:0:-4|1;0|27:-4|1;0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2991 chr21 24881873 GANGSTR_439922 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.99;INFRAME_UP=0.06;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=24881873;END=24881912;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6;DP=52;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|6:1:0.5:52:0:1:1:25.57|26.43:0|0:37.84:0:21:0:-5|2;-2|1;-1|1;0|7;3|1;6|6:-2|1;0|5;6|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2992 chr21 24885604 GANGSTR_439923 ATTAATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24885604;END=24885615;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2993 chr21 24885845 GANGSTR_439924 ATACATACATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24885845;END=24885856;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2994 chr21 24886968 GANGSTR_439925 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=24886968;END=24886979;PERIOD=4;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:0:19.50|19.50:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2995 chr21 24888501 GANGSTR_439926 TTTCATTTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24888501;END=24888510;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:1:0:26.50|26.50:0|0:.:0:.:0:-6|1;0|34:-5|1;0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2996 chr21 24890184 GANGSTR_439927 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24890184;END=24890198;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2997 chr21 24894419 GANGSTR_439929 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24894419;END=24894430;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2998 chr21 24896899 GANGSTR_439930 AAAAGAAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24896899;END=24896918;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
2999 chr21 24899357 GANGSTR_439931 TATACATATACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24899357;END=24899368;PERIOD=6;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|49:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3000 chr21 24907412 GANGSTR_439932 AAACCAAACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24907412;END=24907421;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3001 chr21 24908294 GANGSTR_439933 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24908294;END=24908305;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|45:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3002 chr21 24908511 GANGSTR_439934 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24908511;END=24908522;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3003 chr21 24910840 GANGSTR_439935 AAATAAATAAATT AAATAAATAAATG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24910840;END=24910851;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:56:0:0:1:28.00|28.00:0|0:15.35:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3004 chr21 24912510 GANGSTR_439936 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24912510;END=24912525;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3005 chr21 24913747 GANGSTR_439937 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24913747;END=24913758;PERIOD=3;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3006 chr21 24914404 GANGSTR_439938 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=24914404;END=24914415;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:-1|1;0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3007 chr21 24917945 GANGSTR_439939 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24917945;END=24917956;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3008 chr21 24920144 GANGSTR_439940 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24920144;END=24920155;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3009 chr21 24923621 GANGSTR_439941 CTCCTCTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24923621;END=24923630;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3010 chr21 24924297 GANGSTR_439942 CATCATCATCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24924297;END=24924308;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|41:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3011 chr21 24924943 GANGSTR_439943 AATATAAATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24924943;END=24924954;PERIOD=6;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|45:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3012 chr21 24931724 GANGSTR_439944 AAACAAACAAACAAACAAACAAACAAAC AAACAAACAAACAAACAAACAAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24931724;END=24931751;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:56:0:0:0:28.00|28.00:0|0:9.47:0:.:0:-4|32:-4|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3013 chr21 24935718 GANGSTR_439946 AAAATTAAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24935718;END=24935729;PERIOD=6;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|38:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3014 chr21 24936885 GANGSTR_439947 CTATTCTATTCTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24936885;END=24936899;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:1:34.00|34.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3015 chr21 24938708 GANGSTR_439948 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24938708;END=24938719;PERIOD=2;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3016 chr21 24946652 GANGSTR_439949 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24946652;END=24946667;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3017 chr21 24950342 GANGSTR_439950 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24950342;END=24950353;PERIOD=2;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|29:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3018 chr21 24954299 GANGSTR_439951 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24954299;END=24954308;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3019 chr21 24958818 GANGSTR_439952 AATGAAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24958818;END=24958827;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3020 chr21 24966536 GANGSTR_439953 GAAGGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24966536;END=24966543;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3021 chr21 24973379 GANGSTR_439954 AAACAAACAAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=24973379;END=24973406;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3022 chr21 24975141 GANGSTR_439955 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24975141;END=24975152;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3023 chr21 24992044 GANGSTR_439956 TTTATTTTATTTTATTTTATTTTATTTTT TTTATTTTATTTTATTTTATTTT,TTTATTTTATTTTATTTTATTTTATTTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=24992044;END=24992068;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-6,0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=5;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-6|0:1:0.5:62:0:0:1:34.97|27.03:0|0:46.14:-0.57:40:-0.13:-6|6;0|11:-6|16;0|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3024 chr21 24993616 GANGSTR_439957 ACAACAACAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24993616;END=24993627;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3025 chr21 24999261 GANGSTR_439958 TTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=24999261;END=24999268;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3026 chr21 25011626 GANGSTR_439960 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25011626;END=25011641;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3027 chr21 25012564 GANGSTR_439961 AGAAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25012564;END=25012573;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3028 chr21 25015647 GANGSTR_439962 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25015647;END=25015658;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:1:1:37.50|37.50:0|0:.:0:.:0:0|61;2|1:-12|1;0|60:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3029 chr21 25018441 GANGSTR_439963 TCTTCTCTTCTTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=25018441;END=25018456;PERIOD=8;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|23:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3030 chr21 25025403 GANGSTR_439964 AAATTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=25025403;END=25025412;PERIOD=5;NSKIP=0;NFILT=0;DP=30;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:30:0:0:0:15.00|15.00:0|0:.:0:.:0:0|20:0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3031 chr21 25027874 GANGSTR_439965 CAAACAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25027874;END=25027893;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|26:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3032 chr21 25028100 GANGSTR_439966 ATAAAAATAAATAAAT AAAAAAAAAAAAAAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25028104;END=25028115;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=5;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:48:0:0:0:42.73|5.27:0|0:4.38:-7.86:48:-1.81:0|30:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3033 chr21 25029295 GANGSTR_439967 ACCTACCTACCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25029295;END=25029306;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3034 chr21 25032002 GANGSTR_439968 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25032002;END=25032013;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3035 chr21 25035570 GANGSTR_439969 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25035570;END=25035584;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3036 chr21 25049338 GANGSTR_439970 ATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25049338;END=25049347;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3037 chr21 25052162 GANGSTR_439971 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25052162;END=25052173;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3038 chr21 25052343 GANGSTR_439972 TCCTTCCTTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25052343;END=25052354;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3039 chr21 25054206 GANGSTR_439973 ATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25054206;END=25054214;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.50|32.50:0|0:.:0:.:0:0|53:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3040 chr21 25054613 GANGSTR_439974 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25054613;END=25054624;PERIOD=2;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|30:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3041 chr21 25055233 GANGSTR_439975 CAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25055233;END=25055242;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3042 chr21 25058158 GANGSTR_439976 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTATGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25058158;END=25058187;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6,-4;DP=62;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-6|-4:1:0.5:62:0:3:0:34.50|27.50:0|0:48.05:-0.38:55:-0.38:-6|31;-4|16:-6|30;-4|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3043 chr21 25063241 GANGSTR_439977 TATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25063241;END=25063254;PERIOD=2;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|52:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3044 chr21 25075299 GANGSTR_439978 GAGGAGGAGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25075299;END=25075310;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3045 chr21 25078656 GANGSTR_439979 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25078656;END=25078667;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3046 chr21 25081635 GANGSTR_439980 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25081635;END=25081649;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3047 chr21 25089588 GANGSTR_439981 AATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25089588;END=25089595;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3048 chr21 25090431 GANGSTR_439982 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25090431;END=25090442;PERIOD=2;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3049 chr21 25099147 GANGSTR_439983 TTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25099147;END=25099154;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3050 chr21 25099846 GANGSTR_439984 AAATTAAATTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25099846;END=25099860;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3051 chr21 25102203 GANGSTR_439985 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25102203;END=25102214;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3052 chr21 25103227 GANGSTR_439986 TTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25103227;END=25103246;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3053 chr21 25105712 GANGSTR_439987 ATTCATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25105712;END=25105727;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:2:25.50|25.50:0|0:.:0:.:0:-3|1;0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3054 chr21 25106203 GANGSTR_439988 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=25106203;END=25106214;PERIOD=4;NSKIP=0;NFILT=0;DP=32;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:32:0:0:0:16.00|16.00:0|0:.:0:.:0:0|20:0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3055 chr21 25107218 GANGSTR_439989 AGGCAGATAGATAGAT AAGCAGATAGATAGAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25107222;END=25107233;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:64:0:0:0:32.00|32.00:0|0:16.84:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3056 chr21 25111022 GANGSTR_439990 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25111022;END=25111033;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3057 chr21 25116965 GANGSTR_439991 AAATTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25116965;END=25116974;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3058 chr21 25121907 GANGSTR_439992 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25121907;END=25121918;PERIOD=2;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:1:0:34.00|34.00:0|0:.:0:.:0:-2|1;0|49:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3059 chr21 25123666 GANGSTR_439993 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25123666;END=25123677;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|40:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3060 chr21 25126721 GANGSTR_439994 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25126721;END=25126732;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3061 chr21 25132510 GANGSTR_439995 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25132510;END=25132521;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3062 chr21 25134929 GANGSTR_439996 TTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25134929;END=25134948;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3063 chr21 25137105 GANGSTR_439997 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25137105;END=25137116;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|51:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3064 chr21 25137461 GANGSTR_439998 GAGTGAGTGAGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25137461;END=25137472;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3065 chr21 25138756 GANGSTR_439999 AGTAGTAGTAGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25138756;END=25138767;PERIOD=3;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3066 chr21 25139143 GANGSTR_440000 TCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25139143;END=25139156;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|44:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3067 chr21 25139480 GANGSTR_440001 ACACACACACACACACACACACACACACACAC ACACACACACACACACACACACAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=25139480;END=25139511;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-8;DP=49;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-8|-8:1:1:49:0:2:0:24.50|24.50:0|0:10.23:0:.:0:-12|2;-8|29:-12|2;-8|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3068 chr21 25141028 GANGSTR_440002 ATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=25141028;END=25141041;PERIOD=2;NSKIP=0;NFILT=0;DP=29;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:29:0:1:0:14.50|14.50:0|0:.:0:.:0:0|22:0|20;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3069 chr21 25151174 GANGSTR_440004 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25151174;END=25151185;PERIOD=3;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|54:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3070 chr21 25152439 GANGSTR_440005 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25152439;END=25152450;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3071 chr21 25155584 GANGSTR_440006 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25155584;END=25155598;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3072 chr21 25158172 GANGSTR_440011 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25158172;END=25158183;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3073 chr21 25164672 GANGSTR_440013 ACACACACACACACACACACACACACACAC . . . INFRAME_PGEOM=0.98;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25164672;END=25164701;PERIOD=2;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:2:1:34.00|34.00:0|0:.:0:.:0:-2|2;0|33;2|1:-2|1;0|28;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3074 chr21 25166998 GANGSTR_440014 TTTTAATTTTTTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25166998;END=25167013;PERIOD=8;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=6;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|30:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3075 chr21 25170228 GANGSTR_440016 AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT AAATAAATAAATAAATAAATAAATAAATAAATAAAT,AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=25170228;END=25170271;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-8,4;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-8|4:1:0.5:46:0:0:0:26.08|19.92:0|0:5.58:-0.58:20:-0.19:-8|12;4|5:-8|10;4|5:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3076 chr21 25186172 GANGSTR_440018 TCTGTCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25186172;END=25186179;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3077 chr21 25190976 GANGSTR_440020 GCACTCCAGCACTCCAGCACTCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25190976;END=25190999;PERIOD=8;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|31:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3078 chr21 25191952 GANGSTR_440021 AACAACAACAACAA AACAACAACAACAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.97;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.04;START=25191952;END=25191963;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=1;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|1:1:0.5:53:0:0:0:30.51|22.49:0|0:44.2:-0.54:44:0:0|28;1|13:0|25;1|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3079 chr21 25195342 GANGSTR_440022 TGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25195342;END=25195361;PERIOD=2;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:1:0:33.00|33.00:0|0:.:0:.:0:-2|1;0|40:-2|1;0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3080 chr21 25199899 GANGSTR_440023 TATATATATATATATATATA TATATATATATATATATATATA . . INFRAME_PGEOM=0.97;INFRAME_UP=0.1;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=25199899;END=25199918;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=23;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:0.98:0.49:23:0:0:0:10.36|12.64:0|0:1.68:-0.22:15:0:-1|1;0|6;2|8:0|6;2|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3081 chr21 25206388 GANGSTR_440024 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25206388;END=25206399;PERIOD=3;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3082 chr21 25218760 GANGSTR_440025 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25218760;END=25218771;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3083 chr21 25221556 GANGSTR_440026 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25221556;END=25221571;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3084 chr21 25223203 GANGSTR_440027 TTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25223203;END=25223211;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|61:0|58:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3085 chr21 25223573 GANGSTR_440028 AATAAAATAAAATAAAATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25223573;END=25223597;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3086 chr21 25224319 GANGSTR_440029 GCAAAAAACAAAAC GAAAAAAACAAAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25224323;END=25224332;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=6;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:59:0:0:0:32.00|27.00:0|0:82.25:-0.25:49:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3087 chr21 25228706 GANGSTR_440030 TAATAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25228706;END=25228720;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3088 chr21 25232978 GANGSTR_440031 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25232978;END=25233011;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,2;DP=63;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|2:1:0.5:63:0:1:0:31.85|31.15:0|0:17.97:0:40:-0.12:-2|18;0|2;2|15:-2|16;0|1;2|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3089 chr21 25234075 GANGSTR_440032 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25234075;END=25234089;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:1:35.00|35.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3090 chr21 25235618 GANGSTR_440033 GAAGGAAGGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25235618;END=25235629;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3091 chr21 25239136 GANGSTR_440034 TATAATATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25239136;END=25239145;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3092 chr21 25239482 GANGSTR_440035 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25239482;END=25239493;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3093 chr21 25240277 GANGSTR_440036 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25240277;END=25240288;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3094 chr21 25240585 GANGSTR_440037 ATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25240585;END=25240598;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|45:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3095 chr21 25244120 GANGSTR_440038 TTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25244120;END=25244131;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3096 chr21 25254528 GANGSTR_440040 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=25254528;END=25254539;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|24:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3097 chr21 25264800 GANGSTR_440043 ATATATATATATAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25264800;END=25264813;PERIOD=2;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:1:0:33.00|33.00:0|0:.:0:.:0:-2|1;0|46:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3098 chr21 25266738 GANGSTR_440045 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25266738;END=25266749;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.50|32.50:0|0:.:0:.:0:-6|1;0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3099 chr21 25266998 GANGSTR_440046 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25266998;END=25267009;PERIOD=3;NSKIP=0;NFILT=0;DP=83;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:83:0:0:0:41.50|41.50:0|0:.:0:.:0:0|59:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3100 chr21 25268135 GANGSTR_440047 GATTCAGATTCAGATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25268135;END=25268152;PERIOD=6;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|29:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3101 chr21 25268879 GANGSTR_440048 ACATACATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25268879;END=25268890;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3102 chr21 25276024 GANGSTR_440049 TATTAGGTAGGTAGG TTTTAGGTAGGTAGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25276027;END=25276038;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:53:0:0:0:26.50|26.50:0|0:14.15:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3103 chr21 25278676 GANGSTR_440050 TTATTTTATTTTATTTTATTTTATT TTATTTTATTTTATTTTATTTTATTTTATT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=25278676;END=25278700;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=5;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:5|5:1:1:61:0:0:1:30.50|30.50:0|0:10.28:0:.:0:-2|1;0|1;5|24:5|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3104 chr21 25280193 GANGSTR_440051 ATTATATTATATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25280193;END=25280207;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3105 chr21 25280274 GANGSTR_440052 ATACATACATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25280274;END=25280285;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3106 chr21 25281416 GANGSTR_440053 TAATAATAATAATAA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25281416;END=25281430;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:1:0:30.50|30.50:0|0:.:0:.:0:-3|1;0|39:-3|1;0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3107 chr21 25285768 GANGSTR_440054 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25285768;END=25285779;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3108 chr21 25287771 GANGSTR_440055 ATCAATCAATCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25287771;END=25287782;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3109 chr21 25288342 GANGSTR_440056 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25288342;END=25288353;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3110 chr21 25293715 GANGSTR_440057 AGAGAAGAGAAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25293715;END=25293729;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3111 chr21 25296606 GANGSTR_440058 TTTATTTATTTATTTA TTTATTTATTTATTTATTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25296606;END=25296621;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:63:0:0:0:31.50|31.50:0|0:12.72:0:.:0:-12|7;2|1;3|2;4|33:4|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3112 chr21 25306367 GANGSTR_440060 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25306367;END=25306386;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3113 chr21 25307310 GANGSTR_440061 AAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25307310;END=25307324;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3114 chr21 25309345 GANGSTR_440062 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25309345;END=25309356;PERIOD=2;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3115 chr21 25310706 GANGSTR_440063 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25310706;END=25310725;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3116 chr21 25318024 GANGSTR_440064 TCTTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25318024;END=25318033;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3117 chr21 25318196 GANGSTR_440065 TTGTTGTTGTTGTTGTTGTTGTTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25318196;END=25318219;PERIOD=3;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:1:0:38.50|38.50:0|0:.:0:.:0:0|34;3|1:0|31;3|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3118 chr21 25327069 GANGSTR_440066 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25327069;END=25327080;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3119 chr21 25327810 GANGSTR_440067 AAAACAAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25327810;END=25327834;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3120 chr21 25334487 GANGSTR_440068 TAAAATAAAATAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.03;START=25334487;END=25334501;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:2:27.50|27.50:0|0:.:0:.:0:0|32;1|1:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3121 chr21 25346272 GANGSTR_440069 CAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25346272;END=25346279;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3122 chr21 25347619 GANGSTR_440070 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25347619;END=25347630;PERIOD=3;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|31:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3123 chr21 25347967 GANGSTR_440071 TTGTTTTGTTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25347967;END=25347981;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3124 chr21 25351642 GANGSTR_440072 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25351642;END=25351657;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3125 chr21 25352158 GANGSTR_440073 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25352158;END=25352169;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3126 chr21 25357660 GANGSTR_440074 AAAGAAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25357660;END=25357669;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3127 chr21 25359400 GANGSTR_440075 TTGGAATTGGAATTGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25359400;END=25359417;PERIOD=6;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|38:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3128 chr21 25367079 GANGSTR_440076 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25367079;END=25367108;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:2:1:30.00|30.00:0|0:.:0:.:0:-2|1;-1|1;0|28:-6|1;0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3129 chr21 25370491 GANGSTR_440077 ATGAATGAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25370491;END=25370502;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3130 chr21 25373209 GANGSTR_440078 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25373209;END=25373228;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3131 chr21 25374736 GANGSTR_440079 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25374736;END=25374747;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3132 chr21 25378630 GANGSTR_440080 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=1;INFRAME_UP=0.07;INFRAME_DOWN=0.14;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=25378630;END=25378671;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-12,-2;DP=55;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-12|-2:1:0.5:55:0:1:1:26.84|28.16:0|0:8.79:-0.31:33:-0.14:-12|14;-4|2;-2|7:-12|14;-4|1;-2|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3133 chr21 25379311 GANGSTR_440081 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25379311;END=25379322;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3134 chr21 25381703 GANGSTR_440082 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25381703;END=25381712;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3135 chr21 25383749 GANGSTR_440083 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25383749;END=25383760;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:27.55|29.45:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3136 chr21 25384243 GANGSTR_440084 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25384243;END=25384254;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:36.00|38.00:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3137 chr21 25387032 GANGSTR_440086 GTTGTTGTTGTTGTTGTT GTTGTTGTTGTTGTT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.04;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25387032;END=25387049;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-3:1:0.5:69:0:0:1:34.29|34.71:0|0:17.68:0:47:-0.25:-3|24;0|20:-3|23;0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3138 chr21 25394745 GANGSTR_440087 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25394745;END=25394756;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3139 chr21 25395206 GANGSTR_440088 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25395206;END=25395217;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3140 chr21 25399764 GANGSTR_440089 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25399764;END=25399775;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:1:35.50|35.50:0|0:.:0:.:0:0|54:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3141 chr21 25405402 GANGSTR_440090 GAGAGAGAGAGAGAGA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25405402;END=25405417;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:1:0:28.58|36.42:0|0:.:0:.:0:-2|1;0|40:-2|1;0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3142 chr21 25407171 GANGSTR_440091 AATAAATAAATAAATAAATA AATAAATAAATAAATA . . INFRAME_PGEOM=0.98;INFRAME_UP=0.04;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25407171;END=25407190;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:54:0:0:0:27.64|26.36:0|0:13.74:0:43:0:-4|19;0|16:-4|19;0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3143 chr21 25408268 GANGSTR_440092 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25408268;END=25408279;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:21.50|27.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3144 chr21 25408466 GANGSTR_440093 AGACAAAGACAA AGACAA . . INFRAME_PGEOM=0.98;INFRAME_UP=0.05;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25408466;END=25408477;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-6:1:0.5:54:0:0:0:30.70|23.30:0|0:15.36:-0.44:43:-0.65:-6|17;0|19:-6|17;0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3145 chr21 25415281 GANGSTR_440094 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25415281;END=25415292;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:31.00|29.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3146 chr21 25421715 GANGSTR_440095 TATTTATTTATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25421715;END=25421738;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3147 chr21 25421889 GANGSTR_440096 AGAAGAAGAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25421889;END=25421900;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3148 chr21 25423420 GANGSTR_440097 GAAAGAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25423420;END=25423435;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3149 chr21 25426430 GANGSTR_440098 CTGTGCTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25426430;END=25426439;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3150 chr21 25427095 GANGSTR_440099 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25427095;END=25427106;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3151 chr21 25433111 GANGSTR_440100 ATGTATGTATGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25433111;END=25433122;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:1:34.50|34.50:0|0:.:0:.:0:0|49:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3152 chr21 25435546 GANGSTR_440101 GCTTGTTTGTTTGTTTG GTTTGTTTGTTTGTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25435551;END=25435562;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:61:0:0:0:30.50|30.50:0|0:15.94:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3153 chr21 25437160 GANGSTR_440102 TTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25437160;END=25437169;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3154 chr21 25439163 GANGSTR_440103 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25439163;END=25439174;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3155 chr21 25440330 GANGSTR_440104 AGGGAGGGAGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=25440330;END=25440345;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|24:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3156 chr21 25441983 GANGSTR_440105 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=25441983;END=25441994;PERIOD=4;NSKIP=0;NFILT=0;DP=81;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:81:0:0:0:40.50|40.50:0|0:.:0:.:0:0|63:0|61:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3157 chr21 25459242 GANGSTR_440106 ACAAAGACAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25459242;END=25459253;PERIOD=6;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3158 chr21 25460929 GANGSTR_440107 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25460929;END=25460940;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3159 chr21 25461920 GANGSTR_440108 AAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25461920;END=25461927;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3160 chr21 25463089 GANGSTR_440109 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25463089;END=25463108;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3161 chr21 25466178 GANGSTR_440110 AAATTAAATTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25466178;END=25466192;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3162 chr21 25469220 GANGSTR_440111 TCTCTCTCTCTCTCTCTCTCTCTCTCC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT,TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT . . INFRAME_PGEOM=0.92;INFRAME_UP=0.1;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=25469220;END=25469245;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=10,14;DP=72;DSNP=0;DSTUTTER=4;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:10|14:1:0.5:72:0:4:1:36.39|35.61:0|0:23.7:0:35:-0.13:-40|5;-33|1;-4|1;-3|5;0|2;2|1;8|1;9|3;10|14;12|2;14|12;16|1:10|12;12|2;14|11;16|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3163 chr21 25473716 GANGSTR_440112 CATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25473716;END=25473727;PERIOD=4;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|51:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3164 chr21 25476371 GANGSTR_440113 TATATATATATATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=25476371;END=25476394;PERIOD=2;NSKIP=0;NFILT=0;DP=21;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:21:0:0:0:10.50|10.50:0|0:.:0:.:0:0|10:0|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3165 chr21 25479140 GANGSTR_440114 TTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.73;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.03;START=25479140;END=25479148;PERIOD=3;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:1:1:38.50|38.50:0|0:.:0:.:0:-2|1;0|61:-3|1;0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3166 chr21 25491142 GANGSTR_440115 ATGCATGCATGCATGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25491142;END=25491157;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3167 chr21 25498062 GANGSTR_440116 TATTTATTTATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=25498062;END=25498085;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|17:0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3168 chr21 25501731 GANGSTR_440117 ACACACACACACACACACACACACACACACACACACACAC . . . INFRAME_PGEOM=0.99;INFRAME_UP=0.04;INFRAME_DOWN=0.15;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=25501731;END=25501770;PERIOD=2;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=3;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:3:1:33.00|33.00:0|0:.:0:.:0:-2|3;0|19:-2|3;0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3169 chr21 25506686 GANGSTR_440119 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25506686;END=25506697;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3170 chr21 25507317 GANGSTR_440120 TAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25507317;END=25507324;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:1:36.50|36.50:0|0:.:0:.:0:0|54:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3171 chr21 25521357 GANGSTR_440121 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25521357;END=25521368;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|52:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3172 chr21 25521884 GANGSTR_440122 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=25521884;END=25521919;PERIOD=2;NSKIP=0;NFILT=0;DP=34;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:34:0:1:1:17.00|17.00:0|0:.:0:.:0:0|18:0|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3173 chr21 25526541 GANGSTR_440123 CATTTCATTTCATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=25526541;END=25526555;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3174 chr21 25526715 GANGSTR_440124 ACTACTACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25526715;END=25526723;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3175 chr21 25532570 GANGSTR_440125 TATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25532570;END=25532585;PERIOD=4;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:1:39.50|39.50:0|0:.:0:.:0:0|53:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3176 chr21 25533759 GANGSTR_440126 TATGGTATGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25533759;END=25533768;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3177 chr21 25536727 GANGSTR_440127 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25536727;END=25536738;PERIOD=2;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|34:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3178 chr21 25538042 GANGSTR_440128 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25538042;END=25538053;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3179 chr21 25553106 GANGSTR_440130 TATTATATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25553106;END=25553115;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3180 chr21 25570904 GANGSTR_440131 TTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25570904;END=25570918;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3181 chr21 25575463 GANGSTR_440132 AACCAACCAACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25575463;END=25575474;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3182 chr21 25579099 GANGSTR_440133 CTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.87;INFRAME_UP=0.09;INFRAME_DOWN=0.28;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=25579102;END=25579139;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4,6;DP=48;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:4|6:0.92:0.46:48:0:3:0:23.13|24.87:0|0:1.08:0:20:0:0|6;2|2;4|4;6|6;8|1:2|2;4|4;6|6;8|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3183 chr21 25582811 GANGSTR_440134 AAAACAAAACAAAAC AAAAACAAAACAAAACAAAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25582811;END=25582825;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=6;DP=83;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|6:1:0.5:83:0:0:0:39.54|43.46:0|0:330.21:-0.14:68:-0.33:-23|2;-6|2;0|22;6|21:0|22;6|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3184 chr21 25587068 GANGSTR_440135 GGGAGGGAGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25587068;END=25587079;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:25.00|23.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3185 chr21 25588904 GANGSTR_440136 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25588904;END=25588915;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3186 chr21 25590043 GANGSTR_440137 GAGAGAGAGAGAGAGAT GAGAGAGAGAGAGAGAA,GAGAGAGAGAGAGAGAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25590043;END=25590058;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0,0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:0|0:1:0.5:65:0:0:2:24.56|40.44:0|0:73.2:-1.32:58:-0.24:0|49:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3187 chr21 25590125 GANGSTR_440138 ATCATTATCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25590125;END=25590136;PERIOD=6;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3188 chr21 25591558 GANGSTR_440139 CGACAACAACAACA CAACAACAACAACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25591560;END=25591571;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=61;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:61:0:1:0:33.49|27.51:0|0:82.55:-0.3:54:-0.78:-3|1;0|43:-3|1;0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3189 chr21 25598594 GANGSTR_440140 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25598594;END=25598605;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3190 chr21 25599564 GANGSTR_440141 TTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25599564;END=25599573;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3191 chr21 25601698 GANGSTR_440142 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25601698;END=25601709;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3192 chr21 25602644 GANGSTR_440143 TTCAATTCAATTCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25602644;END=25602658;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:1:33.50|33.50:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3193 chr21 25613377 GANGSTR_440144 TAAATTAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25613377;END=25613386;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3194 chr21 25617170 GANGSTR_440145 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25617170;END=25617185;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3195 chr21 25620766 GANGSTR_440146 TAATAGTAATAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25620766;END=25620777;PERIOD=6;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|42:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3196 chr21 25628376 GANGSTR_440147 TAAATAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25628376;END=25628391;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3197 chr21 25628590 GANGSTR_440148 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25628590;END=25628601;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3198 chr21 25630292 GANGSTR_440149 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.72;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25630292;END=25630321;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,2;DP=71;DSNP=0;DSTUTTER=4;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|2:1:0.5:71:0:4:0:29.76|41.24:0|0:18.67:-0.92:50:-0.41:-6|2;-4|1;-2|16;0|1;2|24;4|1:-6|1;-4|1;-2|14;0|1;2|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3199 chr21 25631278 GANGSTR_440150 TAATTAATTAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25631278;END=25631289;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3200 chr21 25634678 GANGSTR_440151 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25634678;END=25634697;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3201 chr21 25640626 GANGSTR_440152 TATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25640626;END=25640633;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:36.45|33.55:0|0:.:0:.:0:0|53:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3202 chr21 25642103 GANGSTR_440153 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25642103;END=25642114;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3203 chr21 25644755 GANGSTR_440154 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25644755;END=25644766;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3204 chr21 25645346 GANGSTR_440155 CTTTCTTT CTTTCTTC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25645346;END=25645353;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:48:0:0:0:23.00|25.00:0|0:78.4:-0.05:48:-0.11:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3205 chr21 25646934 GANGSTR_440156 TCTCTCTCTCTCTCTCTCTCTG TCTCTCTCTCTCTCTCTCTGT . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.06;START=25646934;END=25646953;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:56:0:0:2:28.50|27.50:0|0:67.76:0:55:-0.1:-4|1;-3|1;-2|2;-1|13;0|21:-1|16;0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3206 chr21 25650476 GANGSTR_440157 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25650476;END=25650487;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3207 chr21 25651694 GANGSTR_440158 TATATATATATA . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25651694;END=25651705;PERIOD=2;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:1:1:32.00|32.00:0|0:.:0:.:0:0|43;2|1:0|42;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3208 chr21 25659399 GANGSTR_440159 ATTTTTAAATTTTTAAATTTTTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=25659399;END=25659422;PERIOD=8;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|20:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3209 chr21 25661199 GANGSTR_440160 ATCATCATCATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25661199;END=25661210;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3210 chr21 25666086 GANGSTR_440162 TAATTAATTAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25666086;END=25666097;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3211 chr21 25666594 GANGSTR_440163 CTCTCTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25666594;END=25666609;PERIOD=2;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|47:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3212 chr21 25672391 GANGSTR_440164 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25672391;END=25672402;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3213 chr21 25675864 GANGSTR_440165 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25675864;END=25675875;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3214 chr21 25676593 GANGSTR_440166 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=25676593;END=25676604;PERIOD=4;NSKIP=0;NFILT=0;DP=27;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:27:0:0:0:13.50|13.50:0|0:.:0:.:0:0|16:0|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3215 chr21 25676775 GANGSTR_440167 ACACAAACACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25676775;END=25676786;PERIOD=6;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3216 chr21 25686481 GANGSTR_440168 AAATAAATAAATAAATAAATAAATAAATAAATAAAT AAATAAATAAATAAATAAATAAATAAATAAAT,AAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT . . INFRAME_PGEOM=0.91;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=25686481;END=25686516;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4,4;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|4:1:0.5:54:0:0:0:26.91|27.09:0|0:8.59:0:16:-0.5:-31|1;-4|7;4|7:-4|7;4|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3217 chr21 25688621 GANGSTR_440169 AAACAAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25688621;END=25688644;PERIOD=4;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:0:39.50|39.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3218 chr21 25692737 GANGSTR_440170 AATAAATAAATAAATA AATAAATAAATA . . INFRAME_PGEOM=0.97;INFRAME_UP=0.05;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25692737;END=25692752;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:72:0:0:0:34.86|37.14:0|0:16.73:-0.05:50:-0.11:-4|20;0|23:-4|18;0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3219 chr21 25704171 GANGSTR_440172 ACACACACACACACACAA ACACACACACACACACAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25704171;END=25704186;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:53:0:0:1:30.99|22.01:0|0:58.57:-0.65:43:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3220 chr21 25706793 GANGSTR_440173 GAAGAGGAAGAGGAAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25706793;END=25706810;PERIOD=6;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|44:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3221 chr21 25722456 GANGSTR_440174 ATACATACATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25722456;END=25722467;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:1:35.00|35.00:0|0:.:0:.:0:0|49:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3222 chr21 25724636 GANGSTR_440175 ATATAAAATATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=25724636;END=25724649;PERIOD=7;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|21:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3223 chr21 25726203 GANGSTR_440176 AACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25726203;END=25726217;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|44:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3224 chr21 25735838 GANGSTR_440177 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25735838;END=25735849;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3225 chr21 25736967 GANGSTR_440178 TGTATGCATGTATGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25736967;END=25736982;PERIOD=8;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|41:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3226 chr21 25740155 GANGSTR_440179 TGCTTTGCTTTGCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25740155;END=25740169;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3227 chr21 25741393 GANGSTR_440180 GAATGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25741393;END=25741400;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3228 chr21 25744904 GANGSTR_440181 ATATATATATATAT . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25744904;END=25744917;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:3:0:27.50|27.50:0|0:.:0:.:0:-2|2;0|40:-2|3;0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3229 chr21 25746006 GANGSTR_440182 GTTTTGTTTTGTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25746006;END=25746020;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:1:34.00|34.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3230 chr21 25751974 GANGSTR_440183 TTATTATTATTATTATTATTA TTATTATTATTATTATTATTATTA . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=25751974;END=25751994;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=3;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:3|3:1:1:46:0:0:0:23.00|23.00:0|0:7.3:0:.:0:-9|1;-6|1;0|1;3|21:3|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3231 chr21 25759768 GANGSTR_440184 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.96;INFRAME_UP=0.06;INFRAME_DOWN=0.19;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=25759768;END=25759805;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2,6;DP=50;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:2|6:1:0.5:50:0:2:1:27.77|22.23:0|0:12.77:-0.35:27:0:-23|1;-2|3;0|5;2|11;4|1;6|5:2|10;4|2;6|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3232 chr21 25777265 GANGSTR_440185 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25777265;END=25777276;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:2:36.00|36.00:0|0:.:0:.:0:0|56:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3233 chr21 25780165 GANGSTR_440186 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25780165;END=25780176;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3234 chr21 25782945 GANGSTR_440187 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25782945;END=25782956;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:1:0:26.50|26.50:0|0:.:0:.:0:-2|1;0|41:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3235 chr21 25793487 GANGSTR_440188 AGCAGGGAAAGAAAGAAA ACCAGGGAAAGAAAGAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25793493;END=25793504;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:56:0:0:1:28.05|27.95:0|0:81.96:0:48:-0.41:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3236 chr21 25795068 GANGSTR_440189 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25795068;END=25795079;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:25.00|31.00:0|0:.:0:.:0:0|44:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3237 chr21 25795772 GANGSTR_440190 TTTATATTTATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25795772;END=25795783;PERIOD=6;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|45:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3238 chr21 25802902 GANGSTR_440191 TTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25802902;END=25802909;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|53:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3239 chr21 25804569 GANGSTR_440192 TAATAAAATAATAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25804569;END=25804584;PERIOD=8;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3240 chr21 25806085 GANGSTR_440193 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25806085;END=25806104;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3241 chr21 25807525 GANGSTR_440194 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25807525;END=25807540;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:1:36.50|36.50:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3242 chr21 25809177 GANGSTR_440195 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25809177;END=25809188;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3243 chr21 25810016 GANGSTR_440196 CAACAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=25810016;END=25810030;PERIOD=3;NSKIP=0;NFILT=0;DP=84;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:84:0:0:0:42.00|42.00:0|0:.:0:.:0:0|62:0|59:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3244 chr21 25813210 GANGSTR_440197 GTTTGTTTGTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25813210;END=25813229;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3245 chr21 25814864 GANGSTR_440198 TAATTTAATTTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25814864;END=25814878;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3246 chr21 25815112 GANGSTR_440199 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25815112;END=25815126;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3247 chr21 25818705 GANGSTR_440200 TGTGTTTGTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25818705;END=25818716;PERIOD=6;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3248 chr21 25823308 GANGSTR_440201 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25823308;END=25823319;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3249 chr21 25824125 GANGSTR_440202 TAATAATAATAATAATAA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25824125;END=25824142;PERIOD=3;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:1:0:36.50|36.50:0|0:.:0:.:0:-3|1;0|41:-3|1;0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3250 chr21 25825780 GANGSTR_440203 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25825780;END=25825791;PERIOD=3;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3251 chr21 25832382 GANGSTR_440204 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25832382;END=25832396;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3252 chr21 25834202 GANGSTR_440205 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25834202;END=25834211;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3253 chr21 25837696 GANGSTR_440206 GAGGGAGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25837696;END=25837707;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3254 chr21 25838964 GANGSTR_440207 ACCACCACCACCACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25838964;END=25838978;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:35.50|25.50:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3255 chr21 25840236 GANGSTR_440208 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25840236;END=25840251;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:1:1:37.00|37.00:0|0:.:0:.:0:-17|1;0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3256 chr21 25845663 GANGSTR_440209 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25845663;END=25845674;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3257 chr21 25857212 GANGSTR_440210 AATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=25857212;END=25857226;PERIOD=3;NSKIP=0;NFILT=0;DP=35;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:0:0:17.50|17.50:0|0:.:0:.:0:0|23:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3258 chr21 25857359 GANGSTR_440211 ATCTCTATCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25857359;END=25857370;PERIOD=6;NSKIP=0;NFILT=0;DP=28;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:28:0:0:0:14.00|14.00:0|0:.:0:.:0:0|26:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3259 chr21 25858103 GANGSTR_440212 ATATCTATATCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25858103;END=25858114;PERIOD=6;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|41:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3260 chr21 25858537 GANGSTR_440213 ATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25858537;END=25858550;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|41:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3261 chr21 25859363 GANGSTR_440214 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25859363;END=25859374;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3262 chr21 25867060 GANGSTR_440215 ATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=25867060;END=25867069;PERIOD=5;NSKIP=0;NFILT=0;DP=91;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:91:0:0:0:45.50|45.50:0|0:.:0:.:0:0|63:0|63:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3263 chr21 25872578 GANGSTR_440216 AGGAGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25872578;END=25872589;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3264 chr21 25873337 GANGSTR_440217 ACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAA ACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.08;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=25873337;END=25873376;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=5;DP=74;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|5:1:0.5:74:0:1:0:34.80|39.20:0|0:2.44:-0.67:32:-0.86:-13|1;-5|1;0|10;5|10:-5|1;0|10;5|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3265 chr21 25875439 GANGSTR_440218 GTATGTATGTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25875439;END=25875450;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3266 chr21 25877385 GANGSTR_440219 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25877385;END=25877400;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3267 chr21 25880589 GANGSTR_440220 TAATTTAATTTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25880589;END=25880603;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3268 chr21 25882033 GANGSTR_440221 GCAGCAGCAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25882033;END=25882044;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3269 chr21 25882466 GANGSTR_440222 TTCTTCTTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25882466;END=25882477;PERIOD=3;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:0:1:35.50|44.50:0|0:.:0:.:0:0|54:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3270 chr21 25895127 GANGSTR_440223 TATGGTATGGTATGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25895127;END=25895141;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3271 chr21 25895495 GANGSTR_440224 TTTAATTTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25895495;END=25895504;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3272 chr21 25896463 GANGSTR_440225 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25896463;END=25896474;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:28.50|29.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3273 chr21 25902796 GANGSTR_440226 GAGAGAGAGAGA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25902796;END=25902807;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:1:0:26.50|26.50:0|0:.:0:.:0:-2|1;0|38:-2|1;0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3274 chr21 25903814 GANGSTR_440227 GTTTTTGTTTTTGTTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25903814;END=25903831;PERIOD=6;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|30:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3275 chr21 25905705 GANGSTR_440228 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.99;INFRAME_UP=0.04;INFRAME_DOWN=0.17;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=25905705;END=25905738;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2,6;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:2|6:1:0.5:59:0:0:2:29.47|29.53:0|0:16.06:0:27:-0.6:-33|1;-11|2;0|7;2|10;6|8:2|12;6|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3276 chr21 25909936 GANGSTR_440229 AAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25909936;END=25909943;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3277 chr21 25911758 GANGSTR_440230 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25911758;END=25911769;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3278 chr21 25911930 GANGSTR_440231 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25911930;END=25911945;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3279 chr21 25914979 GANGSTR_440232 AAAGAAAGAAAGAATG AAAGAAAGAAAGAATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25914979;END=25914990;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:63:0:0:0:26.96|36.04:0|0:87.25:-0.53:59:-0.37:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3280 chr21 25915528 GANGSTR_440233 TATGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.94;INFRAME_UP=0.04;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=25915530;END=25915551;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2,10;DP=48;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:2|10:1:0.5:48:0:2:1:24.96|23.04:0|0:56.54:-0:33:-0.14:-24|1;-1|2;0|1;2|17;8|2;10|11:2|15;8|2;10|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3281 chr21 25920395 GANGSTR_440234 AATATAATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25920395;END=25920404;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3282 chr21 25921576 GANGSTR_440235 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25921576;END=25921587;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3283 chr21 25923065 GANGSTR_440236 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25923065;END=25923076;PERIOD=4;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:0:0:40.00|40.00:0|0:.:0:.:0:0|53:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3284 chr21 25923129 GANGSTR_440237 TATCTATCTATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25923129;END=25923140;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3285 chr21 25936943 GANGSTR_440239 ACAACAACAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25936943;END=25936954;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|47:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3286 chr21 25940453 GANGSTR_440240 ATCTATCTATCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25940453;END=25940464;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3287 chr21 25951424 GANGSTR_440241 TTTGTTTGTTTG TTTGTTTGCTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25951424;END=25951435;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:79:0:0:0:41.48|37.52:0|0:116.47:-0.14:68:-0.34:0|54:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3288 chr21 25953078 GANGSTR_440242 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25953078;END=25953089;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3289 chr21 25954271 GANGSTR_440243 CAACAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25954271;END=25954285;PERIOD=3;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|44:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3290 chr21 25963475 GANGSTR_440244 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25963475;END=25963489;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:1:34.50|34.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3291 chr21 25964386 GANGSTR_440245 TAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25964386;END=25964393;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3292 chr21 25971234 GANGSTR_440247 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25971234;END=25971245;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3293 chr21 25983689 GANGSTR_440248 ACATACATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25983689;END=25983700;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3294 chr21 25983755 GANGSTR_440249 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25983755;END=25983766;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3295 chr21 25985497 GANGSTR_440250 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25985497;END=25985508;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|40:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3296 chr21 25988670 GANGSTR_440251 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGCGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=25988670;END=25988703;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=82;DSNP=0;DSTUTTER=5;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-6|-6:1:1:82:0:5:0:41.00|41.00:0|0:20.27:0:.:0:-8|5;-6|53:-8|4;-6|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3297 chr21 25991691 GANGSTR_440252 TTATTATTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25991691;END=25991711;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3298 chr21 25999982 GANGSTR_440253 GAGTGTGTGTGTGTGTGTGTGTGT GGGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=25999984;END=26000005;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:56:0:0:0:28.00|28.00:0|0:14.14:0:.:0:-5|2;-4|38:-4|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3299 chr21 26013399 GANGSTR_440255 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26013399;END=26013410;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3300 chr21 26018811 GANGSTR_440256 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26018811;END=26018830;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|34:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3301 chr21 26019634 GANGSTR_440257 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26019634;END=26019645;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:0|45:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3302 chr21 26024496 GANGSTR_440258 TTTAATTTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26024496;END=26024505;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3303 chr21 26037586 GANGSTR_440259 AAAGAAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26037586;END=26037595;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3304 chr21 26040974 GANGSTR_440260 TTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26040974;END=26040988;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3305 chr21 26041855 GANGSTR_440261 CTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCT . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26041855;END=26041876;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=61;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:61:0:1:0:30.50|30.50:0|0:10.86:0:.:0:-2|41;0|1:-2|39;0|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3306 chr21 26043306 GANGSTR_440262 ATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26043306;END=26043319;PERIOD=2;NSKIP=0;NFILT=0;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:36:0:0:1:18.00|18.00:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3307 chr21 26049150 GANGSTR_440263 TTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26049150;END=26049161;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:1:34.50|34.50:0|0:.:0:.:0:0|53:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3308 chr21 26050828 GANGSTR_440264 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.94;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=26050828;END=26050839;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:2:34.00|34.00:0|0:.:0:.:0:-1|2;0|51:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3309 chr21 26063623 GANGSTR_440265 AATACAATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26063623;END=26063632;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|57:0|57:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3310 chr21 26068040 GANGSTR_440266 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26068040;END=26068051;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|45:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3311 chr21 26078925 GANGSTR_440267 ATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26078925;END=26078932;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3312 chr21 26079446 GANGSTR_440268 TAAAATAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26079446;END=26079455;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3313 chr21 26079800 GANGSTR_440269 ATTTATTTATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26079800;END=26079823;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3314 chr21 26089565 GANGSTR_440270 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26089565;END=26089576;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3315 chr21 26089868 GANGSTR_440271 AAACAAACAAACAAG AAACAAACAAACAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=26089868;END=26089879;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:42:0:0:0:21.00|21.00:0|0:12.01:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3316 chr21 26094115 GANGSTR_440272 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26094115;END=26094129;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3317 chr21 26098206 GANGSTR_440273 ACAAAACAAAACAAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26098206;END=26098225;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3318 chr21 26099910 GANGSTR_440274 TATGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26099912;END=26099935;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=50;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:50:0:2:0:24.07|25.93:0|0:68.7:-0.05:46:-1.5:-2|1;0|35:-2|2;0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3319 chr21 26118721 GANGSTR_440275 AAATATAAATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26118721;END=26118732;PERIOD=6;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3320 chr21 26120844 GANGSTR_440276 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26120844;END=26120859;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3321 chr21 26135862 GANGSTR_440278 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26135862;END=26135873;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:1:23.00|23.00:0|0:.:0:.:0:0|30:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3322 chr21 26136861 GANGSTR_440279 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26136861;END=26136872;PERIOD=2;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:1:35.50|35.50:0|0:.:0:.:0:-2|1;0|47:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3323 chr21 26138259 GANGSTR_440280 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26138259;END=26138270;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3324 chr21 26141277 GANGSTR_440281 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26141277;END=26141288;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3325 chr21 26144177 GANGSTR_440282 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26144177;END=26144191;PERIOD=5;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3326 chr21 26148169 GANGSTR_440283 ATAATAATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26148169;END=26148186;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|30:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3327 chr21 26155099 GANGSTR_440285 TGTGTATGTGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26155099;END=26155110;PERIOD=6;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|42:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3328 chr21 26155625 GANGSTR_440286 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26155625;END=26155636;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3329 chr21 26156268 GANGSTR_440287 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26156268;END=26156279;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|36:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3330 chr21 26156664 GANGSTR_440288 ATATATATATATATATATAT ATATATATATATATATAT . . INFRAME_PGEOM=0.7;INFRAME_UP=0.03;INFRAME_DOWN=0.13;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26156664;END=26156683;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=58;DSNP=0;DSTUTTER=3;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:58:0:3:2:29.27|28.73:0|0:8.98:-0.2:40:-0.47:-6|2;-4|1;-2|18;0|18:-6|2;-4|1;-2|16;0|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3331 chr21 26161099 GANGSTR_440289 CCTGCCTGCCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26161099;END=26161110;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3332 chr21 26162237 GANGSTR_440290 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26162237;END=26162248;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3333 chr21 26163067 GANGSTR_440291 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26163067;END=26163078;PERIOD=2;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|54:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3334 chr21 26164417 GANGSTR_440292 AGTCAGTCAGTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26164417;END=26164428;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3335 chr21 26168924 GANGSTR_440293 TTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26168924;END=26168938;PERIOD=5;NSKIP=0;NFILT=0;DP=81;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:81:0:0:0:40.50|40.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3336 chr21 26170233 GANGSTR_440294 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26170233;END=26170244;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.50|32.50:0|0:.:0:.:0:0|52:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3337 chr21 26181292 GANGSTR_440295 AACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26181292;END=26181306;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:32.00|29.00:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3338 chr21 26188562 GANGSTR_440296 TACATACATACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26188562;END=26188573;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3339 chr21 26190562 GANGSTR_440297 ATAATAATAATAATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=26190562;END=26190585;PERIOD=3;NSKIP=0;NFILT=0;DP=35;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:0:0:17.50|17.50:0|0:.:0:.:0:0|16:0|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3340 chr21 26191297 GANGSTR_440298 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26191297;END=26191308;PERIOD=2;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:1:33.00|33.00:0|0:.:0:.:0:0|49:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3341 chr21 26192328 GANGSTR_440299 TAACTAACTAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26192328;END=26192339;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3342 chr21 26194560 GANGSTR_440300 TTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26194560;END=26194567;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|42:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3343 chr21 26198501 GANGSTR_440301 ATCTATCTATCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26198501;END=26198512;PERIOD=4;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:0:38.50|38.50:0|0:.:0:.:0:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3344 chr21 26198565 GANGSTR_440302 ACACACACACAC . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.01;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=26198565;END=26198576;PERIOD=2;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:2:0:40.00|40.00:0|0:.:0:.:0:-2|2;0|61:-2|2;0|57:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3345 chr21 26204944 GANGSTR_440303 ACACACACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26204944;END=26204961;PERIOD=2;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:1:0:34.00|34.00:0|0:.:0:.:0:-2|1;0|44:-2|1;0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3346 chr21 26206257 GANGSTR_440304 TATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26206257;END=26206266;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3347 chr21 26207809 GANGSTR_440305 GAAATGAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26207809;END=26207818;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3348 chr21 26208941 GANGSTR_440306 TATTTATTTATT TATTTATTTAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.08;START=26208941;END=26208952;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=34;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:0.96:0.48:34:0:0:1:27.99|6.01:0|0:1.4:-5.53:24:0:-1|1;0|20:-1|1;0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3349 chr21 26209793 GANGSTR_440307 TTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26209793;END=26209802;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3350 chr21 26210580 GANGSTR_440308 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.99;INFRAME_UP=0.04;INFRAME_DOWN=0.14;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=26210580;END=26210617;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6,2;DP=55;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 2|1:2|-6:1:0.5:55:0:3:0:27.45|27.55:0|0:21.29:0:52:-0.84:-8|2;-6|13;-2|1;0|1;2|12:-8|2;-6|13;2|11;4|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3351 chr21 26211608 GANGSTR_440309 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26211608;END=26211619;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3352 chr21 26215891 GANGSTR_440310 AAGAAAAGAAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26215891;END=26215905;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3353 chr21 26220711 GANGSTR_440312 ATTTAATTTAATTTAATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26220711;END=26220730;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3354 chr21 26221461 GANGSTR_440313 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26221461;END=26221475;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3355 chr21 26231006 GANGSTR_440315 AAAGAAAAGAAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26231006;END=26231020;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3356 chr21 26235770 GANGSTR_440316 TGTTTGTTTGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26235770;END=26235789;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3357 chr21 26251670 GANGSTR_440317 AAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26251670;END=26251677;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3358 chr21 26255277 GANGSTR_440318 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26255277;END=26255288;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3359 chr21 26255745 GANGSTR_440319 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26255745;END=26255756;PERIOD=3;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3360 chr21 26258890 GANGSTR_440320 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26258890;END=26258901;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3361 chr21 26259864 GANGSTR_440321 ATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26259864;END=26259879;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3362 chr21 26261314 GANGSTR_440322 ATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26261314;END=26261322;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3363 chr21 26263375 GANGSTR_440323 AAGAAGAAGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26263375;END=26263386;PERIOD=3;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|51:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3364 chr21 26265151 GANGSTR_440324 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26265151;END=26265165;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3365 chr21 26271635 GANGSTR_440325 ACTCACTCACTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26271635;END=26271646;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3366 chr21 26275471 GANGSTR_440326 GGTGGTGGTGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=26275471;END=26275482;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:1:1:28.00|28.00:0|0:.:0:.:0:-1|1;0|43:-3|1;0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3367 chr21 26283252 GANGSTR_440327 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26283252;END=26283263;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3368 chr21 26286529 GANGSTR_440328 TGTATGTATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26286529;END=26286540;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3369 chr21 26290738 GANGSTR_440329 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26290738;END=26290749;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3370 chr21 26292649 GANGSTR_440330 ATATCATATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26292649;END=26292658;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3371 chr21 26294021 GANGSTR_440331 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26294021;END=26294032;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3372 chr21 26297190 GANGSTR_440332 TTGATTGATTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26297190;END=26297201;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3373 chr21 26304972 GANGSTR_440333 TTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26304972;END=26304979;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|54:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3374 chr21 26310750 GANGSTR_440334 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26310750;END=26310761;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3375 chr21 26318308 GANGSTR_440335 TTAAAATTAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26318308;END=26318319;PERIOD=6;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3376 chr21 26319895 GANGSTR_440336 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26319895;END=26319909;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3377 chr21 26320708 GANGSTR_440337 CAGCCAGCCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26320708;END=26320719;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3378 chr21 26322745 GANGSTR_440338 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26322745;END=26322756;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3379 chr21 26323565 GANGSTR_440339 ACTCACTCACTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26323565;END=26323576;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3380 chr21 26333186 GANGSTR_440341 GAAATGAAATGAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26333186;END=26333200;PERIOD=5;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3381 chr21 26334561 GANGSTR_440342 ACTCACTCACTCACTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26334561;END=26334576;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3382 chr21 26335432 GANGSTR_440343 AGTGAGTGAGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26335432;END=26335443;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3383 chr21 26335682 GANGSTR_440344 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26335682;END=26335696;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3384 chr21 26339665 GANGSTR_440345 TGCTGCTGCTGC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26339665;END=26339676;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:1:0:33.00|33.00:0|0:.:0:.:0:-3|1;0|53:-3|1;0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3385 chr21 26340915 GANGSTR_440346 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26340915;END=26340926;PERIOD=4;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:0:39.50|39.50:0|0:.:0:.:0:0|53:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3386 chr21 26346411 GANGSTR_440347 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26346411;END=26346426;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3387 chr21 26351548 GANGSTR_440348 TTTCTTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26351548;END=26351557;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3388 chr21 26352053 GANGSTR_440349 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26352053;END=26352064;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|51:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3389 chr21 26354915 GANGSTR_440350 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26354915;END=26354926;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3390 chr21 26356147 GANGSTR_440351 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26356147;END=26356161;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3391 chr21 26360019 GANGSTR_440352 ACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.01;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=26360019;END=26360030;PERIOD=2;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:1:0:40.00|40.00:0|0:.:0:.:0:-2|1;0|64:-2|1;0|60:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3392 chr21 26367876 GANGSTR_440353 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26367876;END=26367895;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|28:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3393 chr21 26368562 GANGSTR_440354 TTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26368562;END=26368571;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3394 chr21 26373746 GANGSTR_440356 AAGAAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26373746;END=26373755;PERIOD=5;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:1:0:36.50|36.50:0|0:.:0:.:0:0|54:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3395 chr21 26379576 GANGSTR_440358 AAAGGAAAGGAAAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=26379576;END=26379590;PERIOD=5;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|22:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3396 chr21 26382257 GANGSTR_440359 AGAAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26382257;END=26382266;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3397 chr21 26390130 GANGSTR_440360 CAAGCAAGCAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26390130;END=26390141;PERIOD=4;NSKIP=0;NFILT=0;DP=83;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:83:0:0:0:41.50|41.50:0|0:.:0:.:0:0|49:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3398 chr21 26394010 GANGSTR_440362 GTTTGTTTGTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26394010;END=26394029;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3399 chr21 26395896 GANGSTR_440363 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26395896;END=26395907;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3400 chr21 26397401 GANGSTR_440364 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26397401;END=26397412;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3401 chr21 26399387 GANGSTR_440365 ACAAGACAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26399387;END=26399396;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3402 chr21 26401263 GANGSTR_440366 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=26401263;END=26401274;PERIOD=2;NSKIP=0;NFILT=0;DP=31;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:31:0:0:0:15.50|15.50:0|0:.:0:.:0:0|21:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3403 chr21 26409122 GANGSTR_440368 AGTTAGTTAGTTAGTT AGTTAATTAGTTAGTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26409122;END=26409137;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:59:0:0:0:21.48|37.52:0|0:52.93:-1.48:50:-0.11:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3404 chr21 26418933 GANGSTR_440369 TTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.02;START=26418933;END=26418940;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:1:34.00|34.00:0|0:.:0:.:0:0|54;1|1:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3405 chr21 26425428 GANGSTR_440370 AGAATAGAATAGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26425428;END=26425442;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3406 chr21 26425638 GANGSTR_440371 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26425638;END=26425649;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3407 chr21 26428988 GANGSTR_440372 TTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=26428988;END=26429002;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:2:36.00|36.00:0|0:.:0:.:0:-1|1;0|41:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3408 chr21 26429407 GANGSTR_440373 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26429407;END=26429422;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3409 chr21 26431698 GANGSTR_440374 AATAAAATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26431698;END=26431712;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3410 chr21 26435288 GANGSTR_440376 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26435288;END=26435299;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3411 chr21 26440650 GANGSTR_440377 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26440650;END=26440665;PERIOD=4;NSKIP=0;NFILT=0;DP=82;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:82:0:0:0:43.00|39.00:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3412 chr21 26443213 GANGSTR_440378 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26443213;END=26443224;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3413 chr21 26451236 GANGSTR_440379 TCATTCATTCATTCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26451236;END=26451251;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3414 chr21 26455034 GANGSTR_440380 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26455034;END=26455045;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3415 chr21 26456525 GANGSTR_440381 CCCCTCCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26456525;END=26456534;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:2:25.50|25.50:0|0:.:0:.:0:0|36;2|1:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3416 chr21 26458495 GANGSTR_440382 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26458495;END=26458506;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3417 chr21 26463932 GANGSTR_440383 AAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26463932;END=26463939;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3418 chr21 26464179 GANGSTR_440384 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26464179;END=26464190;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|49:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3419 chr21 26467155 GANGSTR_440385 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26467155;END=26467166;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3420 chr21 26471983 GANGSTR_440386 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26471983;END=26471994;PERIOD=2;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|30:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3421 chr21 26475690 GANGSTR_440387 GACTGACTGACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26475690;END=26475701;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3422 chr21 26479825 GANGSTR_440388 TTGTTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26479825;END=26479842;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3423 chr21 26484745 GANGSTR_440389 TCTTTCTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26484745;END=26484756;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3424 chr21 26484894 GANGSTR_440390 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26484894;END=26484908;PERIOD=5;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3425 chr21 26492171 GANGSTR_440391 GAAAAGAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26492171;END=26492180;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3426 chr21 26493075 GANGSTR_440392 TTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26493075;END=26493090;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3427 chr21 26500053 GANGSTR_440393 GTGTGTGTGTGT . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26500053;END=26500064;PERIOD=2;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:1:0:23.50|23.50:0|0:.:0:.:0:-2|1;0|33:-2|1;0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3428 chr21 26503297 GANGSTR_440394 AAATTATAAATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26503297;END=26503310;PERIOD=7;NSKIP=0;NFILT=0;DP=87;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:87:0:0:0:43.50|43.50:0|0:.:0:.:0:0|56:0|58:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3429 chr21 26506519 GANGSTR_440396 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26506519;END=26506530;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|52:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3430 chr21 26520346 GANGSTR_440397 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26520346;END=26520357;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|43:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3431 chr21 26523561 GANGSTR_440398 CAACAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26523561;END=26523575;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3432 chr21 26535733 GANGSTR_440400 CTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26535733;END=26535744;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3433 chr21 26544662 GANGSTR_440402 TTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=26544662;END=26544669;PERIOD=4;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:0:39.50|39.50:0|0:.:0:.:0:0|62:0|61:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3434 chr21 26549654 GANGSTR_440404 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26549654;END=26549665;PERIOD=3;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|53:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3435 chr21 26550994 GANGSTR_440405 ATTTTATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=26550994;END=26551013;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3436 chr21 26555324 GANGSTR_440407 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.92;INFRAME_UP=0.09;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=26555324;END=26555357;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=8,12;DP=55;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:8|12:1:0.5:55:0:1:0:27.98|27.02:0|0:11.89:0:19:-0.19:-52|2;-50|1;-48|1;-38|1;-11|2;0|1;8|10;10|1;12|8:8|10;10|1;12|5:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3437 chr21 26564110 GANGSTR_440408 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26564110;END=26564121;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3438 chr21 26575722 GANGSTR_440409 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26575722;END=26575733;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3439 chr21 26577076 GANGSTR_440410 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26577076;END=26577087;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3440 chr21 26578965 GANGSTR_440411 AAGCAAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26578965;END=26578972;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3441 chr21 26581400 GANGSTR_440412 ATCAATCAATCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26581400;END=26581411;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3442 chr21 26595546 GANGSTR_440413 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26595546;END=26595557;PERIOD=4;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:1:0:38.00|38.00:0|0:.:0:.:0:-32|1;0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3443 chr21 26597653 GANGSTR_440414 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26597653;END=26597664;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3444 chr21 26610415 GANGSTR_440415 AAGAAGAAGAAG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26610415;END=26610426;PERIOD=3;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:1:0:35.50|35.50:0|0:.:0:.:0:-3|1;0|53:-3|1;0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3445 chr21 26614669 GANGSTR_440416 TTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26614669;END=26614678;PERIOD=5;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:0:38.50|38.50:0|0:.:0:.:0:0|54:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3446 chr21 26616727 GANGSTR_440417 GTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26616727;END=26616744;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:66:0:0:0:33.00|33.00:0|0:12.75:0:.:0:-2|43:-2|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3447 chr21 26620184 GANGSTR_440418 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.06;INFRAME_DOWN=0.13;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26620184;END=26620217;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=5;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:5:2:31.00|31.00:0|0:.:0:.:0:-4|1;-2|4;0|23;2|1:-2|4;0|23;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3448 chr21 26623253 GANGSTR_440419 GATTTGATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26623253;END=26623262;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3449 chr21 26623666 GANGSTR_440420 TTCTTCTTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26623666;END=26623677;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3450 chr21 26626363 GANGSTR_440421 AGGAGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26626363;END=26626374;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|46:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3451 chr21 26631439 GANGSTR_440422 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26631439;END=26631450;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3452 chr21 26634035 GANGSTR_440423 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26634035;END=26634046;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3453 chr21 26634509 GANGSTR_440424 ATACATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26634509;END=26634516;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3454 chr21 26639980 GANGSTR_440425 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26639980;END=26639991;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|41;1|1:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3455 chr21 26643143 GANGSTR_440426 ATACATACATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26643143;END=26643154;PERIOD=4;NSKIP=0;NFILT=0;DP=81;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:81:0:0:0:40.50|40.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3456 chr21 26643919 GANGSTR_440427 GTGTGTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26643919;END=26643934;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3457 chr21 26644779 GANGSTR_440428 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26644779;END=26644790;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3458 chr21 26653194 GANGSTR_440429 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.93;INFRAME_UP=0.04;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26653194;END=26653227;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6,-2;DP=65;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-6|-2:1:0.5:65:0:1:1:40.52|24.48:0|0:11.74:-1.78:40:0:-6|26;-4|1;-2|7:-6|25;-4|1;-2|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3459 chr21 26659018 GANGSTR_440430 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26659018;END=26659029;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:-4|1;0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3460 chr21 26660414 GANGSTR_440431 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26660414;END=26660425;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3461 chr21 26660615 GANGSTR_440432 CATTCATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26660615;END=26660630;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3462 chr21 26662311 GANGSTR_440433 ATTAATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26662311;END=26662322;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3463 chr21 26662781 GANGSTR_440434 AATAAATAAATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26662781;END=26662800;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3464 chr21 26664599 GANGSTR_440435 TTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26664599;END=26664618;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3465 chr21 26665292 GANGSTR_440436 AAAGATAGATAGAT ATAGATAGATAGAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26665294;END=26665305;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:43:0:0:0:21.50|21.50:0|0:11.72:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3466 chr21 26670403 GANGSTR_440437 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26670403;END=26670412;PERIOD=5;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|56:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3467 chr21 26678896 GANGSTR_440438 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26678896;END=26678907;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3468 chr21 26679357 GANGSTR_440439 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26679357;END=26679368;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3469 chr21 26681700 GANGSTR_440440 ACAACAACAACAACAACA ACAACAACAACAACAACAAATT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26681700;END=26681717;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=4;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:61:0:0:0:30.50|30.50:0|0:14.45:0:.:0:-24|2;-10|2;4|30:4|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3470 chr21 26685234 GANGSTR_440441 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26685234;END=26685245;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|54:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3471 chr21 26695608 GANGSTR_440442 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26695608;END=26695619;PERIOD=4;NSKIP=0;NFILT=0;DP=85;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:85:0:0:0:42.50|42.50:0|0:.:0:.:0:0|51:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3472 chr21 26702977 GANGSTR_440444 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26702977;END=26702988;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3473 chr21 26704605 GANGSTR_440445 ATATATATATATATATATAGT ATATATATATATATATATATAGT,ATATATATATATATATATATATATATAGA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=26704605;END=26704622;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2,8;DP=19;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:2|8:1:0.5:19:0:0:0:14.00|5.00:0|0:4:-1.2:19:-0.2:2|11;8|2:2|9;8|2:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3474 chr21 26707705 GANGSTR_440446 GCCTGCCTGCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26707705;END=26707716;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3475 chr21 26712069 GANGSTR_440447 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26712069;END=26712080;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3476 chr21 26718024 GANGSTR_440448 TTCTGTTCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26718024;END=26718033;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:23.50|29.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3477 chr21 26721191 GANGSTR_440449 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26721191;END=26721202;PERIOD=4;NSKIP=0;NFILT=0;DP=85;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:85:0:0:0:42.50|42.50:0|0:.:0:.:0:0|53:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3478 chr21 26723030 GANGSTR_440450 AAACAAACAAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26723030;END=26723057;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|28:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3479 chr21 26728872 GANGSTR_440451 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26728872;END=26728883;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3480 chr21 26737554 GANGSTR_440452 AATCAATCAATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26737554;END=26737565;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3481 chr21 26744236 GANGSTR_440453 TGCTTTGCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26744236;END=26744245;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3482 chr21 26747268 GANGSTR_440455 TCAATCAATCAATCAATCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26747268;END=26747287;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|48:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3483 chr21 26748646 GANGSTR_440456 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26748646;END=26748657;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3484 chr21 26759076 GANGSTR_440457 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26759076;END=26759087;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3485 chr21 26764580 GANGSTR_440459 TTGTTTTGTTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26764580;END=26764594;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3486 chr21 26764891 GANGSTR_440460 ATTTATTTATTTATTTATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=26764891;END=26764922;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3487 chr21 26766414 GANGSTR_440461 GAAGGGAAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26766414;END=26766423;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3488 chr21 26767917 GANGSTR_440462 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.98;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=26767917;END=26767928;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:2:31.00|31.00:0|0:.:0:.:0:-1|1;0|41;1|1:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3489 chr21 26769267 GANGSTR_440463 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26769267;END=26769278;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|55:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3490 chr21 26770193 GANGSTR_440464 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.52;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=26770193;END=26770204;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:1:1:33.50|33.50:0|0:.:0:.:0:-5|1;0|49:-4|1;0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3491 chr21 26773847 GANGSTR_440465 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26773847;END=26773858;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3492 chr21 26777278 GANGSTR_440466 AAATAAAATAAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26777278;END=26777292;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3493 chr21 26778049 GANGSTR_440467 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26778049;END=26778060;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3494 chr21 26788749 GANGSTR_440468 TTGATTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26788749;END=26788756;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3495 chr21 26798213 GANGSTR_440469 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26798213;END=26798227;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3496 chr21 26800553 GANGSTR_440470 AAATGAAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26800553;END=26800562;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3497 chr21 26808098 GANGSTR_440471 AAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26808098;END=26808117;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3498 chr21 26810599 GANGSTR_440472 AACAGAACAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26810599;END=26810608;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3499 chr21 26815692 GANGSTR_440473 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26815692;END=26815703;PERIOD=2;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3500 chr21 26826943 GANGSTR_440474 ACAAACAAACAA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26826943;END=26826954;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:1:0:34.00|34.00:0|0:.:0:.:0:-4|1;0|52:-4|1;0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3501 chr21 26829509 GANGSTR_440475 AATAAATAAATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26829509;END=26829528;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3502 chr21 26835137 GANGSTR_440476 AGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26835137;END=26835148;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3503 chr21 26837242 GANGSTR_440477 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26837242;END=26837253;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3504 chr21 26849311 GANGSTR_440478 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26849311;END=26849322;PERIOD=3;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|30:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3505 chr21 26854220 GANGSTR_440479 AAGAAAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26854220;END=26854231;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3506 chr21 26858168 GANGSTR_440480 AAGAAGAAGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26858168;END=26858179;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|50:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3507 chr21 26858426 GANGSTR_440481 GGAGGGAGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26858426;END=26858437;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3508 chr21 26866409 GANGSTR_440482 GGGAGGGAGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26866409;END=26866420;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3509 chr21 26867043 GANGSTR_440483 GAATGAATGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26867043;END=26867054;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3510 chr21 26877575 GANGSTR_440484 AACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26877575;END=26877583;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3511 chr21 26878578 GANGSTR_440485 AACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26878578;END=26878586;PERIOD=3;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|58:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3512 chr21 26882926 GANGSTR_440486 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26882926;END=26882937;PERIOD=4;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:1:38.00|38.00:0|0:.:0:.:0:0|45:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3513 chr21 26887083 GANGSTR_440488 ATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGG ATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26887083;END=26887130;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:80:0:0:0:40.00|40.00:0|0:9.76:0:.:0:-4|32:-4|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3514 chr21 26888424 GANGSTR_440489 GCTGCTGCTGCTGCTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26888424;END=26888441;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:-17|1;0|36:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3515 chr21 26888991 GANGSTR_440490 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26888991;END=26889002;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3516 chr21 26889575 GANGSTR_440491 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26889575;END=26889586;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|47:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3517 chr21 26896294 GANGSTR_440492 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26896294;END=26896305;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|45:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3518 chr21 26897350 GANGSTR_440493 AAGCAAAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26897350;END=26897359;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:1:1:29.50|29.50:0|0:.:0:.:0:-41|1;0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3519 chr21 26910423 GANGSTR_440494 TCATCATCATCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26910423;END=26910434;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:30.50|36.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3520 chr21 26912434 GANGSTR_440495 AATAATAATAATAATAAT AATAATAATAATAAT . . INFRAME_PGEOM=0.98;INFRAME_UP=0.05;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26912434;END=26912451;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-3:1:0.5:49:0:0:1:25.25|23.75:0|0:13.43:-0.06:40:-0:-3|13;0|18:-3|14;0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3521 chr21 26913176 GANGSTR_440496 AATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26913176;END=26913183;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:30.54|31.46:0|0:.:0:.:0:0|51:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3522 chr21 26914274 GANGSTR_440497 GAAGAAGAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26914274;END=26914285;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|51:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3523 chr21 26921303 GANGSTR_440498 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26921303;END=26921317;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3524 chr21 26921788 GANGSTR_440499 AGATAGATAGATAGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26921788;END=26921803;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3525 chr21 26929796 GANGSTR_440500 TGATGATGATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26929796;END=26929807;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.98|32.02:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3526 chr21 26939258 GANGSTR_440501 TCTCTCTCTCTCTC TCTCTCTCTCTC . . INFRAME_PGEOM=0.99;INFRAME_UP=0.03;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26939258;END=26939271;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=61;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:61:0:1:0:26.93|34.07:0|0:11.61:-0.98:46:-0.26:-4|1;-2|26;0|16:-4|1;-2|25;0|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3527 chr21 26944358 GANGSTR_440502 ATGAATGAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=26944358;END=26944369;PERIOD=4;NSKIP=0;NFILT=0;DP=29;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:29:0:0:0:14.50|14.50:0|0:.:0:.:0:0|21:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3528 chr21 26944421 GANGSTR_440503 ATATATATATATATATATATAT ATATATATATATATATATATTT,ATATATATATATATATATATATT . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.99;OUTFRAME_UP=0.22;OUTFRAME_DOWN=0.09;START=26944421;END=26944442;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0,1;DP=27;DSNP=0;DSTUTTER=3;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:0|1:1:0.5:27:0:3:1:13.43|13.57:0|0:14.64:-0:23:-1:-2|1;-1|2;0|10;1|4;3|1:-2|1;-1|2;0|7;1|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3529 chr21 26948798 GANGSTR_440504 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCG . . INFRAME_PGEOM=0.94;INFRAME_UP=0.03;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26948798;END=26948835;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-16,-4;DP=72;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-16|-4:1:0.5:72:0:2:0:29.96|42.04:0|0:130.3:-0.79:62:0:-16|15;-6|4;-4|22:-16|15;-6|2;-4|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3530 chr21 26962947 GANGSTR_440506 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26962947;END=26962958;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|46:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3531 chr21 26970067 GANGSTR_440507 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26970067;END=26970078;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3532 chr21 26973420 GANGSTR_440509 AAATAAATAAATAAACG AAATAAATAAATAAACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26973420;END=26973431;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:53:0:0:0:24.95|28.05:0|0:74.73:-0.12:45:-0.44:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3533 chr21 26974780 GANGSTR_440510 ATACATACATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26974780;END=26974791;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3534 chr21 26976573 GANGSTR_440511 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26976573;END=26976588;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:33.49|31.51:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3535 chr21 26978193 GANGSTR_440512 AAATTAAATTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26978193;END=26978207;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:2:28.50|38.50:0|0:.:0:.:0:-13|1;0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3536 chr21 26980541 GANGSTR_440513 TGAATGAATGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26980541;END=26980560;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.50|32.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3537 chr21 26985864 GANGSTR_440514 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.96;INFRAME_UP=0.05;INFRAME_DOWN=0.14;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=26985864;END=26985893;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=55;DSNP=0;DSTUTTER=3;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:55:0:3:1:26.58|28.42:0|0:17.2:-0.16:25:-0.36:-2|2;0|12;2|1;4|11:-2|1;0|8;2|1;4|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3538 chr21 26987282 GANGSTR_440515 CCTCCCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=26987282;END=26987291;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:27.46|19.54:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3539 chr21 26995504 GANGSTR_440516 GGCTGGCTGGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26995504;END=26995515;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3540 chr21 26998127 GANGSTR_440517 AATAATAATAATAAT AATAATAATAATTAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=26998127;END=26998141;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:72:0:0:0:36.00|36.00:0|0:17.13:0:.:0:0|39:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3541 chr21 27004313 GANGSTR_440518 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27004313;END=27004324;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3542 chr21 27009714 GANGSTR_440519 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27009714;END=27009723;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3543 chr21 27009895 GANGSTR_440520 ACCACCACCACCACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27009895;END=27009909;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3544 chr21 27012164 GANGSTR_440521 CTGCTGCTGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27012164;END=27012175;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3545 chr21 27014908 GANGSTR_440522 TTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27014908;END=27014916;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3546 chr21 27016583 GANGSTR_440523 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27016583;END=27016592;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3547 chr21 27017179 GANGSTR_440524 TTTGTTTGTTTGTTTGTTTGTTTG TTTGTTTGTTTGTTTGTTTG,TTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27017179;END=27017202;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4,12;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|12:1:0.5:54:0:0:0:26.06|27.94:0|0:28.42:-0.06:42:-0.28:-4|19;-2|1;-1|1;2|1;3|2;12|14:-4|19;12|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3548 chr21 27029491 GANGSTR_440526 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27029491;END=27029502;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3549 chr21 27030634 GANGSTR_440527 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27030634;END=27030645;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:32.50|30.50:0|0:.:0:.:0:0|45:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3550 chr21 27031740 GANGSTR_440528 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27031740;END=27031751;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3551 chr21 27032233 GANGSTR_440529 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27032233;END=27032244;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3552 chr21 27034456 GANGSTR_440531 TTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27034456;END=27034465;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3553 chr21 27038355 GANGSTR_440532 AATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27038355;END=27038369;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|43:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3554 chr21 27042563 GANGSTR_440534 AGGTAGGTAGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.6;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.02;START=27042563;END=27042574;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:2:29.00|29.00:0|0:.:0:.:0:0|41;3|1:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3555 chr21 27046709 GANGSTR_440535 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27046709;END=27046723;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3556 chr21 27047291 GANGSTR_440536 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27047291;END=27047302;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3557 chr21 27055717 GANGSTR_440537 TATATATATATA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27055717;END=27055728;PERIOD=2;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:1:0:34.50|34.50:0|0:.:0:.:0:-2|1;0|55:-2|1;0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3558 chr21 27056895 GANGSTR_440538 TTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27056895;END=27056909;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3559 chr21 27057676 GANGSTR_440539 ACAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27057676;END=27057683;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3560 chr21 27062050 GANGSTR_440540 ATGAATGAATGAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=27062050;END=27062065;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:1:1:32.50|32.50:0|0:.:0:.:0:-1|1;0|43:-12|1;0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3561 chr21 27063140 GANGSTR_440541 TTTCTTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27063140;END=27063149;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3562 chr21 27073136 GANGSTR_440542 TCAGCAGTCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27073136;END=27073149;PERIOD=7;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|44:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3563 chr21 27078489 GANGSTR_440543 TTGTTTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27078489;END=27078504;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3564 chr21 27080878 GANGSTR_440544 CAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27080878;END=27080893;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|27:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3565 chr21 27084293 GANGSTR_440545 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27084293;END=27084304;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|55:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3566 chr21 27085872 GANGSTR_440546 GGGGTGGGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27085872;END=27085881;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3567 chr21 27086483 GANGSTR_440547 AGTTAGTTAGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27086483;END=27086494;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|50:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3568 chr21 27086818 GANGSTR_440548 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27086818;END=27086837;PERIOD=4;NSKIP=0;NFILT=0;DP=84;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:84:0:0:0:42.00|42.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3569 chr21 27109810 GANGSTR_440550 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27109810;END=27109824;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:1:36.00|36.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3570 chr21 27110523 GANGSTR_440551 GCCGCCGCCGCCGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27110523;END=27110537;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|36:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3571 chr21 27120227 GANGSTR_440552 GTTTTGTTTTGTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27120227;END=27120241;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3572 chr21 27129808 GANGSTR_440553 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27129808;END=27129819;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|32:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3573 chr21 27137779 GANGSTR_440554 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27137779;END=27137790;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3574 chr21 27153993 GANGSTR_440555 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27153993;END=27154004;PERIOD=2;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:2:33.00|33.00:0|0:.:0:.:0:0|50:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3575 chr21 27160137 GANGSTR_440556 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27160137;END=27160152;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|37:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3576 chr21 27164773 GANGSTR_440557 ATTTATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27164773;END=27164792;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|26:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3577 chr21 27169948 GANGSTR_440559 TCATCATCATCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27169948;END=27169959;PERIOD=3;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3578 chr21 27173188 GANGSTR_440560 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27173188;END=27173199;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3579 chr21 27174126 GANGSTR_440561 AAAGCAAAAAGCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27174126;END=27174139;PERIOD=7;NSKIP=0;NFILT=0;DP=81;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:81:0:0:0:37.58|43.42:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3580 chr21 27177961 GANGSTR_440562 TGTTTTGTTTTGTTTTGTTT TGTTTTGTTTTGTTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27177961;END=27177980;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-3:1:0.5:66:0:0:2:28.25|37.75:0|0:68.32:-0.67:52:-0.23:-3|22;0|19:-3|25;0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3581 chr21 27178143 GANGSTR_440563 TAAATTTAAATTTAAATTTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.94;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.08;START=27178143;END=27178166;PERIOD=6;NSKIP=0;NFILT=0;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:78:0:0:3:39.00|39.00:0|0:.:0:.:0:-1|2;0|29:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3582 chr21 27188632 GANGSTR_440564 AGCAAGCAAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27188632;END=27188643;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|45:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3583 chr21 27190291 GANGSTR_440565 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27190291;END=27190302;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|34:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3584 chr21 27191936 GANGSTR_440566 ACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.93;INFRAME_UP=0.07;INFRAME_DOWN=0.15;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=27191936;END=27191979;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-12,2;DP=59;DSNP=0;DSTUTTER=2;DFLANKINDEL=4;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 2|1:2|-12:1:0.5:59:0:2:4:31.05|27.95:0|0:5.38:-0.12:43:-0.12:-14|1;-12|14;0|4;1|1;2|4:-12|13;0|1;2|4:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3585 chr21 27196127 GANGSTR_440567 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27196127;END=27196138;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3586 chr21 27202449 GANGSTR_440568 AAATAAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27202449;END=27202472;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:29.00|40.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3587 chr21 27219949 GANGSTR_440569 CTCTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27219949;END=27219962;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|44:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3588 chr21 27222226 GANGSTR_440570 TGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27222226;END=27222233;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3589 chr21 27224694 GANGSTR_440571 GATTGATTGATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27224694;END=27224705;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3590 chr21 27233976 GANGSTR_440572 TATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27233976;END=27233983;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|54:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3591 chr21 27235913 GANGSTR_440573 ATACATACATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27235913;END=27235924;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3592 chr21 27239019 GANGSTR_440574 TTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=27239019;END=27239033;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:1:23.00|23.00:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3593 chr21 27240202 GANGSTR_440575 TTTCCTTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27240202;END=27240211;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3594 chr21 27240271 GANGSTR_440576 ATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27240271;END=27240285;PERIOD=3;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|54:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3595 chr21 27240684 GANGSTR_440577 CATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27240684;END=27240695;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:1:29.99|23.01:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3596 chr21 27246843 GANGSTR_440578 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27246843;END=27246854;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3597 chr21 27249919 GANGSTR_440579 TAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA TAAATAAATAAATAAATAAATAAATAAATAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=27249919;END=27249958;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-8;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-8|-8:1:1:69:0:0:1:34.50|34.50:0|0:7.13:0:.:0:-8|18:-8|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3598 chr21 27253117 GANGSTR_440582 TTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27253117;END=27253126;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3599 chr21 27256012 GANGSTR_440583 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27256012;END=27256023;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3600 chr21 27262171 GANGSTR_440584 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27262171;END=27262182;PERIOD=3;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|54:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3601 chr21 27272875 GANGSTR_440585 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27272875;END=27272890;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3602 chr21 27277788 GANGSTR_440587 ATCTTATCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27277788;END=27277797;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3603 chr21 27279450 GANGSTR_440588 TCTTCTTCTTCTTCTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=27279450;END=27279467;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:1:34.00|34.00:0|0:.:0:.:0:-1|1;0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3604 chr21 27282436 GANGSTR_440589 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27282436;END=27282447;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3605 chr21 27284321 GANGSTR_440590 CAGCAGCAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27284321;END=27284338;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|31:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3606 chr21 27300655 GANGSTR_440591 AAACAAACAAACAAACAAACAAACAAAC AAACAAACAAACAAACAAACAAACAAACAAAC . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27300655;END=27300682;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=66;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:66:0:1:0:33.00|33.00:0|0:8.64:0:.:0:-9|1;0|2;4|27:0|1;4|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3607 chr21 27303356 GANGSTR_440593 CCCTCCCTCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27303356;END=27303367;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3608 chr21 27308868 GANGSTR_440595 AAGAAGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27308868;END=27308876;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3609 chr21 27309171 GANGSTR_440596 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27309171;END=27309182;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3610 chr21 27313793 GANGSTR_440597 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27313793;END=27313804;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3611 chr21 27314600 GANGSTR_440598 AGTAAGTAAGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27314600;END=27314611;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:-1|1;0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3612 chr21 27325058 GANGSTR_440599 AAACAAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27325058;END=27325081;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3613 chr21 27328887 GANGSTR_440600 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27328887;END=27328898;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3614 chr21 27330587 GANGSTR_440601 ATTATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27330587;END=27330604;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3615 chr21 27331749 GANGSTR_440602 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27331749;END=27331760;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3616 chr21 27333847 GANGSTR_440603 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27333847;END=27333858;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3617 chr21 27345218 GANGSTR_440604 AGAGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27345218;END=27345231;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|35:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3618 chr21 27348619 GANGSTR_440605 ATTTGATTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27348619;END=27348628;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3619 chr21 27348783 GANGSTR_440606 TGTGTGTGTGTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27348783;END=27348794;PERIOD=2;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:1:0:35.00|35.00:0|0:.:0:.:0:-2|1;0|51:-2|1;0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3620 chr21 27353818 GANGSTR_440607 TGAATGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27353818;END=27353833;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|25:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3621 chr21 27356168 GANGSTR_440609 GGAAGGAAGGAAGGAAGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27356168;END=27356187;PERIOD=4;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:0:1:40.00|40.00:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3622 chr21 27358841 GANGSTR_440610 TAAAATAAAATAAAATAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27358841;END=27358860;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3623 chr21 27359374 GANGSTR_440611 TTGTTTTGTTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27359374;END=27359388;PERIOD=5;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3624 chr21 27383387 GANGSTR_440614 TATTTTTATTTATTTA TTTTTTTATTTATTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.06;START=27383391;END=27383402;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=5;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:48:0:0:1:26.00|22.00:0|0:58.5:-0.2:38:-0.49:-1|1;0|29:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3625 chr21 27384719 GANGSTR_440615 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27384719;END=27384730;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3626 chr21 27385633 GANGSTR_440616 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27385633;END=27385647;PERIOD=5;NSKIP=0;NFILT=0;DP=87;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:87:0:0:0:43.50|43.50:0|0:.:0:.:0:0|56:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3627 chr21 27387660 GANGSTR_440617 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27387660;END=27387671;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3628 chr21 27391705 GANGSTR_440618 CCACCCACCCAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27391705;END=27391716;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3629 chr21 27394182 GANGSTR_440619 GTGGTGGTGGTGGTGGTGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27394182;END=27394202;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|33:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3630 chr21 27394297 GANGSTR_440620 CTTCTTCTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27394297;END=27394308;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3631 chr21 27408531 GANGSTR_440623 CAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=27408531;END=27408545;PERIOD=5;NSKIP=0;NFILT=0;DP=34;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:34:0:0:0:17.00|17.00:0|0:.:0:.:0:0|21:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3632 chr21 27411069 GANGSTR_440624 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27411069;END=27411084;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3633 chr21 27413077 GANGSTR_440625 AAACAAACAAACAAACAAACAAACAAAC AAACAAACAAACAAACAAACAAACAAACAAAC . . INFRAME_PGEOM=0.98;INFRAME_UP=0.04;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27413077;END=27413104;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:73:0:0:0:35.83|37.17:0|0:13.65:0:43:-0.64:-16|1;-1|2;0|18;4|19:0|16;4|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3634 chr21 27415061 GANGSTR_440626 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27415061;END=27415072;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3635 chr21 27415540 GANGSTR_440627 TTTTCTTTTCTTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27415540;END=27415559;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3636 chr21 27416847 GANGSTR_440628 TTTCTTTCTTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27416847;END=27416866;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3637 chr21 27419262 GANGSTR_440629 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27419262;END=27419273;PERIOD=3;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|52:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3638 chr21 27420187 GANGSTR_440630 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27420187;END=27420198;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3639 chr21 27426174 GANGSTR_440631 AGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27426174;END=27426185;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3640 chr21 27426702 GANGSTR_440632 ATGGATGGATGGATGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27426702;END=27426717;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3641 chr21 27427730 GANGSTR_440633 AAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27427730;END=27427749;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3642 chr21 27428355 GANGSTR_440634 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27428355;END=27428366;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3643 chr21 27429787 GANGSTR_440635 CACCACACACACACACACACACACACACA CCACACACACACACACACACACACACACACA . . INFRAME_PGEOM=0.98;INFRAME_UP=0.03;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.08;OUTFRAME_DOWN=0.07;START=27429790;END=27429815;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=65;DSNP=0;DSTUTTER=7;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:65:0:7:2:32.51|32.49:0|0:139.25:0:53:-0.56:-2|3;-1|2;0|22;1|16;2|2:-2|3;0|19;2|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3644 chr21 27432941 GANGSTR_440636 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27432941;END=27432952;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3645 chr21 27434978 GANGSTR_440637 AAATAAATAAATAAATAAATAAATAAATAAAT AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=27434978;END=27435009;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=12;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|12:1:0.5:51:0:0:0:27.08|23.92:0|0:29.12:-0.16:25:0:-27|1;-25|1;0|11;12|6:0|11;12|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3646 chr21 27435998 GANGSTR_440638 AATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27435998;END=27436005;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|53:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3647 chr21 27437170 GANGSTR_440639 TTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27437170;END=27437178;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3648 chr21 27448197 GANGSTR_440640 TATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27448197;END=27448212;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:1:37.00|37.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3649 chr21 27452444 GANGSTR_440641 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27452444;END=27452459;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3650 chr21 27454547 GANGSTR_440642 AAATAAATAAATAAATAAAT AAATAAATAAATAAATAAATAAAT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.06;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27454547;END=27454566;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:61:0:0:0:32.47|28.53:0|0:6.37:-0.42:32:-0.33:0|19;4|10:0|19;4|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3651 chr21 27459001 GANGSTR_440643 CTACTACTACTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27459001;END=27459012;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3652 chr21 27462243 GANGSTR_440644 CGGCCGGCCGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27462243;END=27462254;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:1:23.50|23.50:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3653 chr21 27466735 GANGSTR_440645 AACAAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27466735;END=27466744;PERIOD=5;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3654 chr21 27467154 GANGSTR_440646 TTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27467154;END=27467161;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:1:20.50|20.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3655 chr21 27470516 GANGSTR_440647 ATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=27470516;END=27470524;PERIOD=3;NSKIP=0;NFILT=0;DP=23;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:23:0:0:0:11.50|11.50:0|0:.:0:.:0:0|15:0|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3656 chr21 27481388 GANGSTR_440648 GTGGGTGGGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27481388;END=27481399;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3657 chr21 27482765 GANGSTR_440649 AAAAAACAAAACAAAACAAAA ACAAAACAAAACAAAACAAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27482771;END=27482785;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=6;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:62:0:0:1:23.08|38.92:0|0:57.2:-1.48:50:-0.12:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3658 chr21 27482987 GANGSTR_440650 TAATAATAATAA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27482987;END=27482998;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:1:0:34.00|34.00:0|0:.:0:.:0:-3|1;0|50:-3|1;0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3659 chr21 27489991 GANGSTR_440651 TGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27489991;END=27490004;PERIOD=2;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:2:0:34.50|34.50:0|0:.:0:.:0:-2|2;0|56:-2|2;0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3660 chr21 27490867 GANGSTR_440652 TTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27490867;END=27490876;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3661 chr21 27500191 GANGSTR_440653 GAAAAGAAAAGAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27500191;END=27500205;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:40.00|32.00:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3662 chr21 27503122 GANGSTR_440654 CCTTCCTTCCTTCCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27503122;END=27503137;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3663 chr21 27503550 GANGSTR_440655 AAATAAATAAATAAATAAATAAAT AAATAAATAAATAAATAAATGAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27503550;END=27503573;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:75:0:0:1:37.50|37.50:0|0:17.41:0:.:0:0|33:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3664 chr21 27505557 GANGSTR_440656 ACAAAACAAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27505557;END=27505571;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3665 chr21 27506091 GANGSTR_440657 AAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27506091;END=27506105;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3666 chr21 27510069 GANGSTR_440658 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27510069;END=27510084;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3667 chr21 27511013 GANGSTR_440659 AAAACAAAACAAAACAAAACAAAACAAAACAAAAC AAAACAAAACAAAACAAAACAAAACAAAAC . . INFRAME_PGEOM=0.98;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27511013;END=27511047;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-5;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-5:1:0.5:80:0:0:0:41.80|38.20:0|0:11.31:-0.2:40:-0.28:-5|17;0|16:-5|17;0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3668 chr21 27512198 GANGSTR_440660 AAACAAACAAACAAACAAACAAACAAACAAACAAACAAAC AAACAAACAAACAAACAAACAAACAAACAAAC,AAACAAACAAACAAACAAACAAACAAACAAACAAAC . . INFRAME_PGEOM=0.97;INFRAME_UP=0.06;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27512198;END=27512237;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-8,-4;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-8|-4:1:0.5:74:0:0:0:36.11|37.89:0|0:8.15:0:35:0:-8|15;-4|14:-8|14;-4|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3669 chr21 27525774 GANGSTR_440662 TTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27525774;END=27525788;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3670 chr21 27536564 GANGSTR_440663 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27536564;END=27536578;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3671 chr21 27540415 GANGSTR_440664 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27540415;END=27540434;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3672 chr21 27542417 GANGSTR_440665 CTCCTCCTCCTCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27542417;END=27542431;PERIOD=3;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:0:19.50|19.50:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3673 chr21 27543803 GANGSTR_440666 TTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27543803;END=27543812;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3674 chr21 27558037 GANGSTR_440667 AGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=27558037;END=27558048;PERIOD=2;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|24:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3675 chr21 27559372 GANGSTR_440668 TTGTTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27559372;END=27559389;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3676 chr21 27570070 GANGSTR_440669 ATTTATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27570070;END=27570089;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3677 chr21 27572936 GANGSTR_440670 ATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27572936;END=27572951;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3678 chr21 27576921 GANGSTR_440671 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27576921;END=27576932;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:25.10|31.90:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3679 chr21 27581534 GANGSTR_440672 TTTGTTTGTTTGTTTGTTTGTTTG TTTGTTTGTTTGTTTGTTTGTTTGTTTG . . INFRAME_PGEOM=0.97;INFRAME_UP=0.08;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=27581534;END=27581557;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:46:0:0:0:20.66|25.34:0|0:3.27:-0.49:26:0:-26|1;-7|3;0|10;4|12:0|10;4|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3680 chr21 27584086 GANGSTR_440673 TAAATAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27584086;END=27584101;PERIOD=4;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:0:0:40.00|40.00:0|0:.:0:.:0:0|53:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3681 chr21 27587993 GANGSTR_440674 TCTTTTCTTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.97;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.12;START=27587993;END=27588007;PERIOD=5;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=8;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:8:37.50|35.50:0|0:.:0:.:0:-1|4;0|40;1|1:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3682 chr21 27597634 GANGSTR_440675 ATGTATGTATGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27597634;END=27597645;PERIOD=4;NSKIP=0;NFILT=0;DP=83;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:83:0:0:0:41.50|41.50:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3683 chr21 27617627 GANGSTR_440676 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27617627;END=27617638;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3684 chr21 27629179 GANGSTR_440677 AGCAGCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27629179;END=27629187;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|42:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3685 chr21 27630681 GANGSTR_440678 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27630681;END=27630692;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3686 chr21 27633864 GANGSTR_440679 TTTATTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27633864;END=27633887;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:1:26.50|26.50:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3687 chr21 27642242 GANGSTR_440680 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27642242;END=27642253;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3688 chr21 27642661 GANGSTR_440681 TTTAATTTAATTTAATTTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27642661;END=27642680;PERIOD=5;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:0:39.50|39.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3689 chr21 27643263 GANGSTR_440682 TGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27643263;END=27643282;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:63:0:0:0:31.50|31.50:0|0:13.7:0:.:0:-2|47:-2|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3690 chr21 27643356 GANGSTR_440683 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27643356;END=27643367;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3691 chr21 27647412 GANGSTR_440684 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27647412;END=27647427;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|54:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3692 chr21 27649930 GANGSTR_440685 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27649930;END=27649941;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3693 chr21 27665841 GANGSTR_440688 TACTTACTTACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27665841;END=27665852;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|36:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3694 chr21 27666535 GANGSTR_440689 GTGTGGTGTGGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27666535;END=27666549;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3695 chr21 27670987 GANGSTR_440691 TATGTATGTATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27670987;END=27670998;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3696 chr21 27673785 GANGSTR_440693 TCTCTTCTCTTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27673785;END=27673799;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:1:32.00|32.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3697 chr21 27679785 GANGSTR_440694 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27679785;END=27679796;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3698 chr21 27682273 GANGSTR_440695 AACAAACAAACAAACAAACAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27682273;END=27682296;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3699 chr21 27694064 GANGSTR_440696 ATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=27694064;END=27694079;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:1:36.50|36.50:0|0:.:0:.:0:-1|1;0|51:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3700 chr21 27698871 GANGSTR_440697 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27698871;END=27698886;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3701 chr21 27702481 GANGSTR_440698 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27702481;END=27702492;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3702 chr21 27702772 GANGSTR_440699 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27702772;END=27702783;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3703 chr21 27707030 GANGSTR_440700 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.02;START=27707030;END=27707044;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:2:35.50|35.50:0|0:.:0:.:0:0|42;1|1:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3704 chr21 27707264 GANGSTR_440701 TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTA TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTA . . INFRAME_PGEOM=0.97;INFRAME_UP=0.1;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=27707264;END=27707307;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:0.99:0.5:50:0:0:0:25.39|24.61:0|0:2.15:-0:13:-0.23:-4|6;0|7:-4|6;0|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3705 chr21 27708547 GANGSTR_440702 AAAAGAAAGAAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.76;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.1;START=27708547;END=27708564;PERIOD=9;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:3:28.50|28.50:0|0:.:0:.:0:-2|1;-1|1;0|22:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3706 chr21 27712876 GANGSTR_440703 TGTTGTTGTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27712876;END=27712887;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3707 chr21 27715757 GANGSTR_440704 AAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27715757;END=27715776;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3708 chr21 27724818 GANGSTR_440705 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27724818;END=27724833;PERIOD=4;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|46:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3709 chr21 27728400 GANGSTR_440706 TTTTGTTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27728400;END=27728424;PERIOD=5;NSKIP=0;NFILT=0;DP=81;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:81:0:0:0:40.50|40.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3710 chr21 27729517 GANGSTR_440707 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27729517;END=27729528;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3711 chr21 27732141 GANGSTR_440708 AAATAAATAAATAAAT AAATAAATAAATTAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=27732141;END=27732156;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:43:0:0:1:21.50|21.50:0|0:10.44:0:.:0:-9|1;0|21:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3712 chr21 27735149 GANGSTR_440709 TAGTTAGTTAGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27735149;END=27735160;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3713 chr21 27736592 GANGSTR_440710 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27736592;END=27736611;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3714 chr21 27748417 GANGSTR_440711 ATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27748417;END=27748424;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3715 chr21 27753327 GANGSTR_440712 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27753327;END=27753338;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3716 chr21 27757848 GANGSTR_440713 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27757848;END=27757859;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|35:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3717 chr21 27760126 GANGSTR_440714 TTATTTTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27760126;END=27760140;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3718 chr21 27760713 GANGSTR_440715 CTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=27760713;END=27760724;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:2:27.00|27.00:0|0:.:0:.:0:-1|1;0|39:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3719 chr21 27762000 GANGSTR_440716 CACACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27762000;END=27762013;PERIOD=2;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|48:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3720 chr21 27762469 GANGSTR_440717 CCCACCCCACCCCAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27762469;END=27762483;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3721 chr21 27763934 GANGSTR_440718 ATGGATGGATGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27763934;END=27763945;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3722 chr21 27775272 GANGSTR_440719 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27775272;END=27775286;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3723 chr21 27775940 GANGSTR_440720 CTCCTCCTCCTCCTCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27775940;END=27775957;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3724 chr21 27779486 GANGSTR_440721 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27779486;END=27779497;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|52:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3725 chr21 27780466 GANGSTR_440722 CAAAAACAAAAACAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27780466;END=27780483;PERIOD=6;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3726 chr21 27781934 GANGSTR_440723 ACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.99;INFRAME_UP=0.1;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27781934;END=27781963;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=62;DSNP=0;DSTUTTER=4;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:62:0:4:0:27.76|34.24:0|0:6.42:-0.7:39:0:-2|2;0|16;2|19;4|1:-2|1;0|13;2|16;4|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3727 chr21 27784146 GANGSTR_440724 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27784146;END=27784157;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3728 chr21 27785044 GANGSTR_440725 ACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.97;INFRAME_UP=0.08;INFRAME_DOWN=0.22;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.09;START=27785044;END=27785083;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2,4;DP=66;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:2|4:1:0.5:66:0:2:1:33.18|32.82:0|0:3.2:-0.39:23:0:0|3;1|1;2|12;4|8:0|1;2|11;4|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3729 chr21 27787128 GANGSTR_440726 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27787128;END=27787139;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:1:35.50|35.50:0|0:.:0:.:0:0|54:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3730 chr21 27790447 GANGSTR_440727 TTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27790447;END=27790456;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3731 chr21 27790842 GANGSTR_440728 TGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.93;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27790842;END=27790861;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=70;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:70:0:2:1:34.49|35.51:0|0:46.02:0:49:-0.61:-23|1;0|26;2|2;4|20:0|23;2|2;4|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3732 chr21 27793634 GANGSTR_440729 AACAACAACAAC AACAACAACAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27793634;END=27793645;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:54:0:0:0:26.00|28.00:0|0:87.98:-0.05:50:-0.11:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3733 chr21 27796153 GANGSTR_440730 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27796153;END=27796164;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3734 chr21 27798193 GANGSTR_440731 TCTCTCTCTCTC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27798193;END=27798204;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:1:0:24.50|24.50:0|0:.:0:.:0:-2|1;0|37:-2|1;0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3735 chr21 27798982 GANGSTR_440732 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG,AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.07;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=27798982;END=27799025;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-10,-4;DP=58;DSNP=0;DSTUTTER=3;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-10|-4:1:0.5:58:0:3:2:28.67|29.33:0|0:14.94:-0:25:-0.16:-10|9;-8|1;-6|3;-4|6:-10|8;-8|1;-6|1;-4|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3736 chr21 27804305 GANGSTR_440733 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27804305;END=27804316;PERIOD=2;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3737 chr21 27806394 GANGSTR_440734 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27806394;END=27806405;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|31:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3738 chr21 27808739 GANGSTR_440735 TTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27808739;END=27808754;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3739 chr21 27820345 GANGSTR_440736 CACACACACACACACA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27820345;END=27820360;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:2:0:30.50|30.50:0|0:.:0:.:0:-2|1;0|43:-2|1;0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3740 chr21 27824191 GANGSTR_440737 CACACACACACACACACACACACACACACACA CACACACACACACACACACACACACACACACACA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.08;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=27824191;END=27824222;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=50;DSNP=0;DSTUTTER=4;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:50:0:4:0:25.00|25.00:0|0:4.1:0:.:0:-2|1;0|3;2|17;4|1:0|2;2|17;4|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3741 chr21 27827866 GANGSTR_440739 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27827866;END=27827877;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3742 chr21 27833394 GANGSTR_440740 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27833394;END=27833405;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3743 chr21 27838127 GANGSTR_440741 TTTCATTTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27838127;END=27838136;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3744 chr21 27843977 GANGSTR_440742 TCTTTCTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27843977;END=27843988;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3745 chr21 27847923 GANGSTR_440743 AACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27847923;END=27847937;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3746 chr21 27852661 GANGSTR_440744 CATGCACATGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27852661;END=27852672;PERIOD=6;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3747 chr21 27855138 GANGSTR_440745 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27855138;END=27855149;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3748 chr21 27860560 GANGSTR_440746 CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC CTTACTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC,CTTACTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC . . INFRAME_PGEOM=0.98;INFRAME_UP=0.05;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27860560;END=27860603;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4,8;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:4|8:1:0.5:77:0:0:1:39.60|37.40:0|0:11.56:-0.13:37:-0.55:-8|2;-5|2;2|1;4|16;8|15:4|14;8|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3749 chr21 27860905 GANGSTR_440747 TGTTTTGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27860905;END=27860924;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3750 chr21 27862635 GANGSTR_440748 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27862635;END=27862646;PERIOD=2;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|42:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3751 chr21 27866507 GANGSTR_440749 AAAGCAAAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27866507;END=27866516;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3752 chr21 27873653 GANGSTR_440750 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27873653;END=27873664;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3753 chr21 27877186 GANGSTR_440751 TGATTTGATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27877186;END=27877195;PERIOD=5;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3754 chr21 27887672 GANGSTR_440752 TTTTCTTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.98;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=27887672;END=27887686;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:2:36.85|33.15:0|0:.:0:.:0:-1|1;0|41;1|1:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3755 chr21 27892433 GANGSTR_440753 ATATATATATATATATATATATATATAT ATATATATATATATATAT . . INFRAME_PGEOM=1;INFRAME_UP=0.12;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=27892433;END=27892460;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-10;DP=34;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-10:1:0.5:34:0:1:0:8.90|25.10:0|0:4.62:-3.4:20:0:-10|14;-8|1:-10|12;-8|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3756 chr21 27893359 GANGSTR_440754 GGAGGGAGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27893359;END=27893370;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3757 chr21 27893511 GANGSTR_440755 TAAAATAAAATAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27893511;END=27893525;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3758 chr21 27898774 GANGSTR_440756 CAACAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27898774;END=27898788;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|42:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3759 chr21 27902368 GANGSTR_440757 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27902368;END=27902379;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3760 chr21 27904319 GANGSTR_440758 TGATGATGATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27904319;END=27904330;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3761 chr21 27905442 GANGSTR_440759 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=27905442;END=27905453;PERIOD=4;NSKIP=0;NFILT=0;DP=24;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:24:0:0:0:12.00|12.00:0|0:.:0:.:0:-1|1;0|17:0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3762 chr21 27907323 GANGSTR_440760 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27907323;END=27907334;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3763 chr21 27935893 GANGSTR_440761 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=27935893;END=27935908;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|29:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3764 chr21 27941932 GANGSTR_440762 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27941932;END=27941943;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3765 chr21 27943837 GANGSTR_440763 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27943837;END=27943856;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|52:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3766 chr21 27946977 GANGSTR_440764 ATAAATATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27946977;END=27946988;PERIOD=6;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|41:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3767 chr21 27952243 GANGSTR_440765 CTTCTTCTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27952243;END=27952254;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3768 chr21 27953287 GANGSTR_440766 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27953287;END=27953298;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3769 chr21 27954320 GANGSTR_440767 TTTATTTATTTATTTATTTATTTATTTATTTATTTA TTTATTTATTTATTTATTTATTTATTTA,TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.07;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=27954320;END=27954355;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-8,4;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-8|4:1:0.5:54:0:0:0:27.19|26.81:0|0:8.22:-0:39:-0.12:-14|1;-8|11;0|2;4|4:-8|11;4|5:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3770 chr21 27954799 GANGSTR_440768 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27954799;END=27954814;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3771 chr21 27955458 GANGSTR_440769 ATTGATTGATTGATTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27955458;END=27955473;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3772 chr21 27955759 GANGSTR_440770 ATAATAATAATA ATAATAATAATAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.92;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.03;START=27955759;END=27955770;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=1;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|1:1:0.5:59:0:0:1:31.28|27.72:0|0:49.55:-0.11:47:-2.11:0|24;1|17;2|1:0|22;1|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3773 chr21 27969150 GANGSTR_440771 AAATAAATAAAT AAATAAATAAATAATAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27969150;END=27969161;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=5;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|5:1:0.5:60:0:0:2:24.98|35.02:0|0:97.64:-0.74:46:-0.44:-9|1;0|19;5|18:0|16;5|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3774 chr21 27971977 GANGSTR_440772 ACCACCACCACCACCACCACCACCACCACC . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=27971977;END=27972006;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:1:0:22.50|22.50:0|0:.:0:.:0:-3|1;0|22:-3|1;0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3775 chr21 27979299 GANGSTR_440773 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27979299;END=27979310;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3776 chr21 27979786 GANGSTR_440774 AAAATTCAAAATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=27979786;END=27979799;PERIOD=7;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|43:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3777 chr21 28001240 GANGSTR_440775 ACACACACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACAAAAACAC,ACACACACACACACACACACACACACACACACACACACACAAACAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=28001240;END=28001289;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4,-4;DP=42;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|-4:1:0.5:42:0:1:0:19.28|22.72:0|0:38.33:-0.22:32:-0.51:-4|17:-4|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3778 chr21 28003789 GANGSTR_440776 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28003789;END=28003800;PERIOD=4;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|51:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3779 chr21 28010071 GANGSTR_440777 ATTTTTATTTTT ATTTTTATTTATTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.93;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=28010071;END=28010082;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=2;DP=60;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=5;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:60:0:1:1:31.41|28.59:0|0:136.09:-0.05:52:0:-32|1;0|19;1|1;2|14:0|21;2|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3780 chr21 28012232 GANGSTR_440778 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28012232;END=28012247;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|30:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3781 chr21 28015905 GANGSTR_440780 AACAAACAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28015905;END=28015916;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:1:43.05|27.95:0|0:.:0:.:0:-8|1;0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3782 chr21 28018417 GANGSTR_440781 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28018417;END=28018428;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:24.50|19.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3783 chr21 28020757 GANGSTR_440782 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28020757;END=28020768;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3784 chr21 28024696 GANGSTR_440783 CTCCCAAACAAA CCCCCAAACAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28024700;END=28024707;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:64:0:0:0:32.00|32.00:0|0:16.56:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3785 chr21 28037863 GANGSTR_440785 CTTTCTTTCTTTCTTT CTTTCTTTCTTT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.22;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28037863;END=28037878;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:0.98:0.49:51:0:0:0:16.24|34.76:0|0:1.61:-2.02:44:-0.28:-4|28;0|7:-4|27;0|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3786 chr21 28038802 GANGSTR_440786 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28038802;END=28038816;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:1:24.00|24.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3787 chr21 28039707 GANGSTR_440787 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28039707;END=28039718;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.56|29.44:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3788 chr21 28042452 GANGSTR_440788 ATACACATACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28042452;END=28042463;PERIOD=6;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3789 chr21 28050003 GANGSTR_440789 TCTCTCTCTCTCTCTC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28050003;END=28050018;PERIOD=2;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:2:0:35.00|35.00:0|0:.:0:.:0:-11|1;-6|1;-2|1;0|46:-2|1;0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3790 chr21 28050533 GANGSTR_440790 GAAAGAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28050533;END=28050548;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3791 chr21 28057648 GANGSTR_440791 CTCACTCACTCACG CTCACTCACTCACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28057648;END=28057659;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:68:0:0:0:34.00|34.00:0|0:17.76:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3792 chr21 28059830 GANGSTR_440792 TTAATTAATTAA TTAATTAATTTA,TTAATTTATTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28059830;END=28059841;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0,0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:0|0:1:0.5:56:0:0:0:32.99|23.01:0|0:70.01:-0.69:50:-0.6:-8|1;0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3793 chr21 28065475 GANGSTR_440793 TCATTCATTCATTCAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28065475;END=28065490;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:1:0:27.00|27.00:0|0:.:0:.:0:-4|1;0|38:-4|1;0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3794 chr21 28079546 GANGSTR_440794 TCCCTCCCTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28079546;END=28079557;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3795 chr21 28080461 GANGSTR_440795 AGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28080461;END=28080472;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3796 chr21 28081838 GANGSTR_440796 TTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28081838;END=28081857;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3797 chr21 28083076 GANGSTR_440797 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28083076;END=28083087;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3798 chr21 28083588 GANGSTR_440798 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28083588;END=28083603;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:2:33.50|33.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3799 chr21 28086573 GANGSTR_440799 TGAAGTTTTTGTTTTGTTTTGTTTTG TCTAGTTTTTGTTTTGTTTTGTTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28086579;END=28086598;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=5;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:58:0:0:0:26.49|31.51:0|0:158.96:-0.25:47:-0.61:-2|1;0|34:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3800 chr21 28089770 GANGSTR_440800 CTGCTGCTGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28089770;END=28089781;PERIOD=3;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|54:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3801 chr21 28090728 GANGSTR_440801 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28090728;END=28090739;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3802 chr21 28092617 GANGSTR_440802 ACATACATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28092617;END=28092628;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:30.50|27.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3803 chr21 28094002 GANGSTR_440803 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.72;INFRAME_UP=0.19;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=28094002;END=28094045;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-8,-4;DP=47;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-8|-4:1:0.5:47:0:2:1:22.61|24.39:0|0:7.94:0:35:-0.78:-10|1;-8|7;-6|1;-4|7;-2|1;0|1;2|1:-10|1;-8|7;-6|1;-4|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3804 chr21 28094515 GANGSTR_440804 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28094515;END=28094526;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|44:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3805 chr21 28107089 GANGSTR_440805 TCCTTCCTTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28107089;END=28107100;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:2:34.00|34.00:0|0:.:0:.:0:-2|1;0|53:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3806 chr21 28107752 GANGSTR_440806 TTGTTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28107752;END=28107769;PERIOD=3;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3807 chr21 28110192 GANGSTR_440807 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28110192;END=28110203;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3808 chr21 28120027 GANGSTR_440808 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28120027;END=28120042;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:24.50|37.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3809 chr21 28128446 GANGSTR_440809 AACAACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28128446;END=28128463;PERIOD=3;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|54:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3810 chr21 28136705 GANGSTR_440810 CTCACACACACACACACACACACACACACACACACACA CACACACACACACACACACACACACACACA,CTCACACACACACACACACACACACACACACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.07;INFRAME_DOWN=0.15;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=28136707;END=28136742;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-8,-6;DP=51;DSNP=0;DSTUTTER=6;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-8|-6:1:0.5:51:0:6:2:26.38|24.62:0|0:28.69:-0.06:42:-0.44:-28|1;-10|1;-8|13;-6|10:-10|2;-8|15;-6|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3811 chr21 28141076 GANGSTR_440812 ATATATATATAT ATATATATATATAT . . INFRAME_PGEOM=0.96;INFRAME_UP=0.08;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=28141076;END=28141087;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=32;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:32:0:0:0:16.22|15.78:0|0:5.44:-0:23:0:0|12;2|9:0|10;2|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3812 chr21 28148231 GANGSTR_440813 CCCTCCCTCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28148231;END=28148242;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:1:25.50|25.50:0|0:.:0:.:0:-17|1;0|35:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3813 chr21 28156058 GANGSTR_440814 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28156058;END=28156069;PERIOD=2;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|55:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3814 chr21 28162026 GANGSTR_440815 TTCTTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28162026;END=28162035;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3815 chr21 28162837 GANGSTR_440816 TAAAATAAAATAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28162837;END=28162851;PERIOD=5;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:0:39.50|39.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3816 chr21 28166183 GANGSTR_440817 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28166183;END=28166197;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3817 chr21 28166923 GANGSTR_440818 TCCCTCCCTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28166923;END=28166934;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3818 chr21 28171370 GANGSTR_440819 CATGCATGCATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28171370;END=28171381;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:-34|1;0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3819 chr21 28172308 GANGSTR_440820 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28172308;END=28172319;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3820 chr21 28177090 GANGSTR_440821 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28177090;END=28177101;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3821 chr21 28177889 GANGSTR_440822 TCTTTCTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28177889;END=28177900;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3822 chr21 28184255 GANGSTR_440823 AAACCAAACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28184255;END=28184264;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3823 chr21 28196060 GANGSTR_440825 CTTCCTTCCTTCCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28196060;END=28196075;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:36.50|32.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3824 chr21 28197995 GANGSTR_440826 TTTGAATTTGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28197995;END=28198006;PERIOD=6;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3825 chr21 28201721 GANGSTR_440827 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=28201721;END=28201732;PERIOD=4;NSKIP=0;NFILT=0;DP=82;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:82:0:0:0:41.00|41.00:0|0:.:0:.:0:0|65:0|63:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3826 chr21 28209632 GANGSTR_440828 AATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28209632;END=28209646;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3827 chr21 28210264 GANGSTR_440829 CTTCTTCTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28210264;END=28210275;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3828 chr21 28217158 GANGSTR_440830 AGCAGCAGCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28217158;END=28217169;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3829 chr21 28217781 GANGSTR_440831 CCCCACCCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28217781;END=28217790;PERIOD=5;NSKIP=0;NFILT=0;DP=33;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:33:0:0:0:16.50|16.50:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3830 chr21 28217852 GANGSTR_440832 CCGCGCTCCGCGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=28217852;END=28217865;PERIOD=7;NSKIP=0;NFILT=0;DP=34;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:34:0:0:0:17.00|17.00:0|0:.:0:.:0:0|22:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3831 chr21 28225249 GANGSTR_440834 CTCTCTCTCTCT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28225249;END=28225260;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:1:1:31.50|31.50:0|0:.:0:.:0:-2|1;0|48:-2|1;0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3832 chr21 28225701 GANGSTR_440835 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28225701;END=28225712;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|53:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3833 chr21 28236079 GANGSTR_440836 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28236079;END=28236090;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:36.50|31.50:0|0:.:0:.:0:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3834 chr21 28244511 GANGSTR_440837 GGGCGGGCGGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=28244511;END=28244522;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:5:22.50|22.50:0|0:.:0:.:0:0|28:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3835 chr21 28245701 GANGSTR_440838 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28245701;END=28245712;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3836 chr21 28246646 GANGSTR_440839 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28246646;END=28246660;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3837 chr21 28248235 GANGSTR_440840 AGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.06;START=28248235;END=28248246;PERIOD=2;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:1:21.50|21.50:0|0:.:0:.:0:-1|1;0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3838 chr21 28256404 GANGSTR_440841 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28256404;END=28256415;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3839 chr21 28261894 GANGSTR_440842 TCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=28261894;END=28261907;PERIOD=2;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|62:0|60:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3840 chr21 28275307 GANGSTR_440843 TCATTCATTCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28275307;END=28275318;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3841 chr21 28276422 GANGSTR_440844 AAGAAAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28276422;END=28276433;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3842 chr21 28277902 GANGSTR_440845 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28277902;END=28277917;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3843 chr21 28295570 GANGSTR_440847 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28295570;END=28295581;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3844 chr21 28300222 GANGSTR_440848 GATGGATGGATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28300222;END=28300233;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3845 chr21 28301852 GANGSTR_440849 AACCAACCAACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28301852;END=28301863;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3846 chr21 28307427 GANGSTR_440850 TAATAATAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28307427;END=28307444;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3847 chr21 28310848 GANGSTR_440851 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28310848;END=28310862;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3848 chr21 28327200 GANGSTR_440852 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28327200;END=28327211;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3849 chr21 28336994 GANGSTR_440853 TTCCTTCCTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28336994;END=28337005;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3850 chr21 28337932 GANGSTR_440854 CGCCGCCGCCGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28337932;END=28337943;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3851 chr21 28338799 GANGSTR_440855 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=28338799;END=28338810;PERIOD=2;NSKIP=0;NFILT=0;DP=32;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:32:0:0:0:16.00|16.00:0|0:.:0:.:0:0|23:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3852 chr21 28349471 GANGSTR_440857 TTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28349471;END=28349478;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:30.46|27.54:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3853 chr21 28358694 GANGSTR_440858 AAAACAAAACAAAAC AAAACAAAACAAAACAAAAC . . INFRAME_PGEOM=0.96;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28358694;END=28358708;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=5;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|5:1:0.5:54:0:0:1:25.70|28.30:0|0:8.39:-0.13:37:-0.48:-6|1;0|14;5|18:0|14;5|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3854 chr21 28358856 GANGSTR_440859 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28358856;END=28358867;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3855 chr21 28361980 GANGSTR_440860 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28361980;END=28361991;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3856 chr21 28373639 GANGSTR_440861 TAATAATAATAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28373639;END=28373659;PERIOD=3;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3857 chr21 28386941 GANGSTR_440862 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28386941;END=28386952;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3858 chr21 28387635 GANGSTR_440863 TTTATTTATTTATTTATTTATTTA TTTATTTATTTATTTATTTATTTATTTA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.07;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28387635;END=28387658;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:70:0:0:0:31.38|38.62:0|0:5.75:-0.57:40:-0.48:-9|1;0|16;4|17:0|15;4|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3859 chr21 28391444 GANGSTR_440864 CATCTGCATCTGCATCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28391444;END=28391461;PERIOD=6;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|36:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3860 chr21 28393342 GANGSTR_440865 ACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.91;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28393342;END=28393379;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=69;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:69:0:1:0:38.86|30.14:0|0:23.65:-0.73:37:-0.13:-4|12;0|19:-4|11;0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3861 chr21 28395294 GANGSTR_440866 TTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28395294;END=28395308;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3862 chr21 28399270 GANGSTR_440867 CTATCTATCTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=28399270;END=28399281;PERIOD=4;NSKIP=0;NFILT=0;DP=82;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:82:0:0:0:41.00|41.00:0|0:.:0:.:0:0|62:0|62:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3863 chr21 28403359 GANGSTR_440868 CATTCATTCATTCATT CATTCATTCATTCATTCATTCATTCATTCATT,CATGCATTCATTCATTCATTCATTCATTCATTCATT . . INFRAME_PGEOM=0.98;INFRAME_UP=0.08;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=28403359;END=28403374;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=16,20;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:16|20:1:0.5:71:0:0:0:32.73|38.27:0|0:30.58:-0.23:53:0:-56|1;-23|1;-16|1;-12|4;-6|5;-3|1;-2|4;0|3;1|2;16|12;20|14:16|15;20|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3864 chr21 28404178 GANGSTR_440869 TGTTGTTGTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28404178;END=28404189;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|43:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3865 chr21 28406307 GANGSTR_440870 AATACAATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.02;START=28406307;END=28406316;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:1:35.00|35.00:0|0:.:0:.:0:0|51;1|1:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3866 chr21 28410772 GANGSTR_440871 ATATACATATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28410772;END=28410783;PERIOD=6;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|35:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3867 chr21 28414713 GANGSTR_440872 ATGAATGAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28414713;END=28414724;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|53:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3868 chr21 28417020 GANGSTR_440873 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28417020;END=28417031;PERIOD=4;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:0:0:40.00|40.00:0|0:.:0:.:0:0|60:0|59:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3869 chr21 28423784 GANGSTR_440874 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28423784;END=28423795;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:30.44|28.56:0|0:.:0:.:0:0|45:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3870 chr21 28431806 GANGSTR_440875 TTTCTCTCTCTCTCTC TCTCTCTCTCTCTCTC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28431808;END=28431821;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=69;DSNP=0;DSTUTTER=1;DFLANKINDEL=9;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:69:0:1:9:40.41|28.59:0|0:41.65:-0.81:60:-1.43:0|40:0|35;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3871 chr21 28434024 GANGSTR_440876 AAATAAATAAATAAATAAATAAATAAAT AAATAAATAAATAAATAAATAAATAAATAAAT,AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=28434024;END=28434051;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4,16;DP=53;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:4|16:1:0.5:53:0:1:0:28.53|24.47:0|0:14.92:-0.2:38:0:-12|1;-3|1;-1|1;0|1;1|2;2|1;4|10;12|1;16|4:4|10;12|1;16|4:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3872 chr21 28438149 GANGSTR_440877 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28438149;END=28438160;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3873 chr21 28442241 GANGSTR_440878 AAGAGAAAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28442241;END=28442252;PERIOD=6;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3874 chr21 28444370 GANGSTR_440879 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28444370;END=28444381;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|44:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3875 chr21 28446058 GANGSTR_440880 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28446058;END=28446069;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:24.00|33.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3876 chr21 28459102 GANGSTR_440881 AAACAAACAAACAAACAAACAAAAA AAACAAACAAACAAACAAAC,AAACAAACAAACAAACAAACAAAA . . INFRAME_PGEOM=0.97;INFRAME_UP=0.06;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.98;OUTFRAME_UP=0.13;OUTFRAME_DOWN=0.03;START=28459102;END=28459121;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-5,-1;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=5;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-5|-1:1:0.5:58:0:0:0:22.15|35.85:0|0:24.2:-1.14:45:0:-5|11;-1|20;0|3:-5|16;-1|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3877 chr21 28468937 GANGSTR_440882 TCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.02;START=28468937;END=28468950;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:2:27.50|27.50:0|0:.:0:.:0:0|39;1|1:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3878 chr21 28478127 GANGSTR_440883 AGAGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28478127;END=28478140;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3879 chr21 28479718 GANGSTR_440884 TAGGCTAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28479718;END=28479727;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3880 chr21 28483595 GANGSTR_440885 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28483595;END=28483606;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:1:1:27.00|27.00:0|0:.:0:.:0:0|39;2|1:0|38;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3881 chr21 28485737 GANGSTR_440886 TATATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=28485737;END=28485752;PERIOD=2;NSKIP=0;NFILT=0;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:36:0:0:1:18.00|18.00:0|0:.:0:.:0:-2|1;0|20:0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3882 chr21 28487468 GANGSTR_440887 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28487468;END=28487479;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3883 chr21 28488470 GANGSTR_440888 TCAAGTCAAGTCAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28488470;END=28488484;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3884 chr21 28490792 GANGSTR_440889 TCTTTCTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28490792;END=28490803;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3885 chr21 28491979 GANGSTR_440890 ATTTATTTATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=28491979;END=28492002;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3886 chr21 28500331 GANGSTR_440891 TTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28500331;END=28500342;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3887 chr21 28503871 GANGSTR_440892 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28503871;END=28503882;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3888 chr21 28506443 GANGSTR_440893 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.03;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28506443;END=28506472;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=75;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:75:0:2:1:38.24|36.76:0|0:40.26:-0.06:44:-1.38:-2|2;0|22;4|20:-2|2;0|19;4|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3889 chr21 28507378 GANGSTR_440894 ATTGGAATTGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28507378;END=28507389;PERIOD=6;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3890 chr21 28510052 GANGSTR_440895 TAAATTAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28510052;END=28510061;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3891 chr21 28511519 GANGSTR_440897 TATATATATATA TATATATATATATATA . . INFRAME_PGEOM=0.91;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28511519;END=28511530;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:43:0:0:0:25.48|17.52:0|0:17.67:-0.7:30:-0.97:-34|1;-15|1;0|20;4|8:0|19;4|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3892 chr21 28512810 GANGSTR_440898 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28512810;END=28512821;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3893 chr21 28520353 GANGSTR_440900 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTC,TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTC . . INFRAME_PGEOM=0.84;INFRAME_UP=0.03;INFRAME_DOWN=0.13;OUTFRAME_PGEOM=0.59;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.06;START=28520353;END=28520388;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-8,7;DP=69;DSNP=0;DSTUTTER=4;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-8|7:1:0.5:69:0:4:0:38.85|30.15:0|0:72:-0.47:69:-0.48:-8|22;-1|1;1|1;2|1;3|1;5|2;7|10:-8|20;2|1;3|1;5|2;7|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3894 chr21 28538745 GANGSTR_440902 TTTTAATTTTTAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28538745;END=28538758;PERIOD=7;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|36:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3895 chr21 28539594 GANGSTR_440903 CAACAACAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=28539594;END=28539611;PERIOD=3;NSKIP=0;NFILT=0;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:36:0:0:0:14.92|21.08:0|0:.:0:.:0:0|24:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3896 chr21 28539991 GANGSTR_440904 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28539991;END=28540002;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3897 chr21 28543468 GANGSTR_440905 TTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28543468;END=28543475;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3898 chr21 28544442 GANGSTR_440907 ATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28544442;END=28544451;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3899 chr21 28550001 GANGSTR_440908 TTACTTACTTAC TTACTTAC . . INFRAME_PGEOM=0.97;INFRAME_UP=0.03;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28550001;END=28550012;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:69:0:0:0:36.01|32.99:0|0:41.76:-0.1:61:-0.1:-4|28;0|22:-4|28;0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3900 chr21 28550864 GANGSTR_440909 CTGTCTGTCTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28550864;END=28550875;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3901 chr21 28552166 GANGSTR_440910 CAACAACAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28552166;END=28552183;PERIOD=3;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:2:39.50|39.50:0|0:.:0:.:0:0|53:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3902 chr21 28553376 GANGSTR_440911 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28553376;END=28553387;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3903 chr21 28554292 GANGSTR_440912 CTACCTACCTACCTAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=28554292;END=28554307;PERIOD=4;NSKIP=0;NFILT=0;DP=26;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:26:0:1:0:15.50|10.50:0|0:.:0:.:0:-4|1;0|18:-4|1;0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3904 chr21 28556946 GANGSTR_440913 TTATTATTA TTATCATTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28556946;END=28556954;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:58:0:0:0:26.47|31.53:0|0:82.76:-0.23:53:-0.24:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3905 chr21 28557883 GANGSTR_440914 TATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28557883;END=28557892;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3906 chr21 28560053 GANGSTR_440915 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28560053;END=28560064;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3907 chr21 28563248 GANGSTR_440916 AAGGTAAGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28563248;END=28563257;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3908 chr21 28565912 GANGSTR_440917 GAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGA . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28565912;END=28565933;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=50;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:50:0:1:0:25.00|25.00:0|0:9.29:0:.:0:-6|1;-4|30:-6|1;-4|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3909 chr21 28575035 GANGSTR_440919 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28575035;END=28575046;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3910 chr21 28582585 GANGSTR_440920 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28582585;END=28582596;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:1:34.00|34.00:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3911 chr21 28582722 GANGSTR_440921 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28582722;END=28582736;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3912 chr21 28583958 GANGSTR_440922 CTCTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28583958;END=28583971;PERIOD=2;NSKIP=0;NFILT=0;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:36:0:0:0:18.00|18.00:0|0:.:0:.:0:0|26:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3913 chr21 28585544 GANGSTR_440923 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28585544;END=28585555;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3914 chr21 28590524 GANGSTR_440924 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28590524;END=28590539;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3915 chr21 28593043 GANGSTR_440925 TTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28593043;END=28593054;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3916 chr21 28600712 GANGSTR_440926 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28600712;END=28600723;PERIOD=3;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|38:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3917 chr21 28602387 GANGSTR_440927 TAGTAGTAGTAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28602387;END=28602398;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3918 chr21 28602850 GANGSTR_440928 TTTAATTTAATTTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28602850;END=28602864;PERIOD=5;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3919 chr21 28608827 GANGSTR_440929 TCTCTTCTCTTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28608827;END=28608841;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3920 chr21 28610524 GANGSTR_440930 TATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28610524;END=28610537;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|48:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3921 chr21 28615617 GANGSTR_440931 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28615617;END=28615628;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:1:36.50|36.50:0|0:.:0:.:0:0|50:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3922 chr21 28620526 GANGSTR_440932 CTCCTCCTCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28620526;END=28620537;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3923 chr21 28627474 GANGSTR_440933 CTTTCTTTCTTT CTTTCTTTCTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28627474;END=28627485;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:52:0:0:0:20.50|31.50:0|0:67.42:-0.82:49:-0.83:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3924 chr21 28629286 GANGSTR_440934 AAGAAGAAGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28629286;END=28629297;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:-46|1;0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3925 chr21 28637100 GANGSTR_440936 GTTGTTGTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28637100;END=28637111;PERIOD=3;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3926 chr21 28644430 GANGSTR_440937 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28644430;END=28644441;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3927 chr21 28645283 GANGSTR_440938 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28645283;END=28645297;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3928 chr21 28646043 GANGSTR_440939 TTTCATTTTCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28646043;END=28646054;PERIOD=6;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|43:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3929 chr21 28649979 GANGSTR_440940 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.84;INFRAME_UP=0.04;INFRAME_DOWN=0.15;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=28649979;END=28650008;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6;DP=48;DSNP=0;DSTUTTER=4;DFLANKINDEL=2;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:6|6:1:1:48:0:4:2:24.00|24.00:0|0:9.16:0:.:0:-9|1;-3|2;2|1;4|3;5|1;6|24:2|1;4|2;6|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3930 chr21 28650513 GANGSTR_440941 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28650513;END=28650524;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|46:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3931 chr21 28651017 GANGSTR_440942 TTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28651017;END=28651026;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3932 chr21 28652317 GANGSTR_440943 TTATTATTATTATTATTATTATTATTATTATTATTATTATTA TTATTATTATTATTATTATTATTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=28652317;END=28652358;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-18;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-18|-18:1:1:41:0:0:0:20.50|20.50:0|0:5.67:0:.:0:-18|15:-18|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3933 chr21 28654906 GANGSTR_440944 AAACAAAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28654906;END=28654925;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3934 chr21 28661682 GANGSTR_440945 ATATATATATATATAT ATATATATATATAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28661682;END=28661697;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:65:0:0:1:32.50|32.50:0|0:13.67:0:.:0:-3|1;-2|43:-2|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3935 chr21 28663733 GANGSTR_440946 TGTATGTATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28663733;END=28663744;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3936 chr21 28664059 GANGSTR_440947 ATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28664059;END=28664073;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3937 chr21 28668967 GANGSTR_440948 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28668967;END=28668978;PERIOD=4;NSKIP=0;NFILT=0;DP=84;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:84:0:0:0:42.00|42.00:0|0:.:0:.:0:0|57:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3938 chr21 28670451 GANGSTR_440949 GAAGGAAGGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28670451;END=28670462;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3939 chr21 28673227 GANGSTR_440950 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28673227;END=28673238;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3940 chr21 28673540 GANGSTR_440951 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28673540;END=28673551;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|54:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3941 chr21 28684138 GANGSTR_440952 GTTGTTGTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28684138;END=28684149;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3942 chr21 28685043 GANGSTR_440953 TGTTGTTGTTGTTGTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28685043;END=28685060;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3943 chr21 28693080 GANGSTR_440954 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28693080;END=28693091;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3944 chr21 28694597 GANGSTR_440955 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28694597;END=28694608;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3945 chr21 28699366 GANGSTR_440956 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28699366;END=28699377;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|45:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3946 chr21 28702426 GANGSTR_440957 AAACTACACACACACAC AGACTACACACACACAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28702431;END=28702442;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:51:0:0:0:25.50|25.50:0|0:12.94:0:.:0:0|38:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3947 chr21 28708395 GANGSTR_440958 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28708395;END=28708409;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:1:33.50|33.50:0|0:.:0:.:0:-11|1;0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3948 chr21 28709291 GANGSTR_440959 AATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28709291;END=28709305;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3949 chr21 28709784 GANGSTR_440960 TGTATATATATATATATATATATATA TATATATATATATATATATA . . INFRAME_PGEOM=0.99;INFRAME_UP=0.04;INFRAME_DOWN=0.15;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=28709786;END=28709809;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=52;DSNP=0;DSTUTTER=4;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-6|-6:1:1:52:0:4:1:26.00|26.00:0|0:11.73:0:.:0:-8|5;-6|21:-8|4;-6|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3950 chr21 28711812 GANGSTR_440961 ACCTACCTACCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28711812;END=28711823;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3951 chr21 28716024 GANGSTR_440962 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28716024;END=28716035;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3952 chr21 28720939 GANGSTR_440963 TTTAATTTTAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=28720939;END=28720950;PERIOD=6;NSKIP=0;NFILT=0;DP=28;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:28:0:0:0:14.00|14.00:0|0:.:0:.:0:0|21:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3953 chr21 28723989 GANGSTR_440964 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28723989;END=28724000;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3954 chr21 28729251 GANGSTR_440965 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28729251;END=28729262;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3955 chr21 28736918 GANGSTR_440966 TATATATATATA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28736918;END=28736929;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:1:0:28.50|28.50:0|0:.:0:.:0:-2|1;0|47:-2|1;0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3956 chr21 28743329 GANGSTR_440967 CCAAACCAAACCAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28743329;END=28743343;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3957 chr21 28745005 GANGSTR_440968 AAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28745005;END=28745012;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3958 chr21 28746719 GANGSTR_440969 TAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28746719;END=28746727;PERIOD=3;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|51:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3959 chr21 28749782 GANGSTR_440970 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28749782;END=28749793;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3960 chr21 28752504 GANGSTR_440971 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28752504;END=28752515;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|52:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3961 chr21 28757339 GANGSTR_440972 TATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28757339;END=28757354;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:1:0:31.00|31.00:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3962 chr21 28757616 GANGSTR_440973 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28757616;END=28757627;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3963 chr21 28763203 GANGSTR_440974 TTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28763203;END=28763212;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3964 chr21 28777337 GANGSTR_440975 ACACACACACACACACACACACACACAC ACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.85;INFRAME_UP=0.05;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28777337;END=28777364;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,8;DP=71;DSNP=0;DSTUTTER=4;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|8:1:0.5:71:0:4:0:33.11|37.89:0|0:20.58:-0.25:47:-0.62:-2|20;0|8;4|1;6|1;8|14:-2|19;4|1;6|1;8|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3965 chr21 28787635 GANGSTR_440976 ATATATATATAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28787635;END=28787646;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:1:0:26.50|26.50:0|0:.:0:.:0:-2|1;0|46:-2|1;0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3966 chr21 28791831 GANGSTR_440977 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28791831;END=28791842;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:27.00|21.00:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3967 chr21 28792169 GANGSTR_440978 AAATAAATAAATAAATAAATAAATAAAT AAATAAATAAATAAATAAATAAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28792169;END=28792196;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:73:0:0:0:36.50|36.50:0|0:10.96:0:.:0:-4|36:-4|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3968 chr21 28792608 GANGSTR_440979 TATTTATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28792608;END=28792627;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.50|32.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3969 chr21 28796067 GANGSTR_440980 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28796067;END=28796078;PERIOD=4;NSKIP=0;NFILT=0;DP=91;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:91:0:0:0:45.50|45.50:0|0:.:0:.:0:0|61:0|59:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3970 chr21 28799094 GANGSTR_440982 AGTGTGTGTGTGTGTGTGTGTGT ACTGTGTGTGTGTGTGTGTGTGT,AGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28799095;END=28799116;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0,6;DP=78;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:0|6:1:0.5:78:0:2:0:40.48|37.52:0|0:121.57:-0.09:71:-0.09:-12|1;-11|1;-9|1;-2|2;0|26;6|26:-2|2;0|24;6|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3971 chr21 28801031 GANGSTR_440983 TGAGTTGAGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28801031;END=28801040;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3972 chr21 28801250 GANGSTR_440984 CATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28801250;END=28801261;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|60:0|59:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3973 chr21 28802657 GANGSTR_440985 AAATAAAATAAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28802657;END=28802671;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3974 chr21 28803680 GANGSTR_440986 TTTGGTTTTGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28803680;END=28803691;PERIOD=6;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|42:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3975 chr21 28804236 GANGSTR_440987 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28804236;END=28804247;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3976 chr21 28810558 GANGSTR_440988 GATGGATGGATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28810558;END=28810569;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3977 chr21 28818196 GANGSTR_440989 GGTAGGTAGGTAGGTAGGTAGGTAGGTAGGTAGGTAGGTA GGTAGGTAGGTAGGTAGGTAGGTAGGTAGGTAGGTAGGTAGGTA . . INFRAME_PGEOM=0.97;INFRAME_UP=0.06;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28818196;END=28818235;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|0:4|0:1:0.5:77:0:0:1:39.01|37.99:0|0:9.27:0:38:-0.72:0|20;4|16:0|18;4|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3978 chr21 28819759 GANGSTR_440990 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28819759;END=28819770;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:1:22.00|22.00:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3979 chr21 28828920 GANGSTR_440992 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28828920;END=28828931;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:32.58|27.42:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3980 chr21 28834563 GANGSTR_440993 ACACACACACACACACACACAC ACACACACACACACACACACACAC . . INFRAME_PGEOM=0.97;INFRAME_UP=0.04;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28834563;END=28834584;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:48:0:0:0:26.55|21.45:0|0:7.38:-0.55:31:-1.19:0|19;2|11:0|17;2|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3981 chr21 28835818 GANGSTR_440994 ACACACACACACACACACAC ACACACACACACACACACACACAC . . INFRAME_PGEOM=0.91;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28835818;END=28835837;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:56:0:0:0:24.56|31.44:0|0:35.05:-0.44:43:0:0|19;4|23:0|18;4|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3982 chr21 28838657 GANGSTR_440995 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28838657;END=28838668;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3983 chr21 28840341 GANGSTR_440996 AGAAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28840341;END=28840350;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3984 chr21 28852994 GANGSTR_440997 CACACACACACACACACACACACACACA CACACACACACACACACACACAGACACACA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.08;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28852994;END=28853021;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=58;DSNP=0;DSTUTTER=3;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:58:0:3:1:23.66|34.34:0|0:20.06:-0.76:44:0:0|11;2|17:0|10;2|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3985 chr21 28859562 GANGSTR_440998 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28859562;END=28859573;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3986 chr21 28865288 GANGSTR_440999 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28865288;END=28865317;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|33:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3987 chr21 28867129 GANGSTR_441000 ACATACATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28867129;END=28867140;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3988 chr21 28875011 GANGSTR_441001 ACAAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28875011;END=28875020;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3989 chr21 28876290 GANGSTR_441002 ACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.86;INFRAME_UP=0.08;INFRAME_DOWN=0.19;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=28876290;END=28876331;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2,6;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:2|6:1:0.5:63:0:0:2:30.05|32.95:0|0:7.35:-0.39:23:-0.17:-31|2;-6|2;0|3;2|7;6|8:2|8;6|5:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3990 chr21 28880830 GANGSTR_441003 GTAGTAGTAGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28880830;END=28880841;PERIOD=3;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|57:0|57:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3991 chr21 28881735 GANGSTR_441004 ACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.71;INFRAME_UP=0.2;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28881735;END=28881772;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=64;DSNP=0;DSTUTTER=10;DFLANKINDEL=2;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:64:0:10:2:32.00|32.00:0|0:2.45:0:.:0:-8|2;-4|2;-2|21;0|2;2|3;4|1:-4|1;-2|20;0|1;2|3;4|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3992 chr21 28883903 GANGSTR_441005 TGCTTGCTTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28883903;END=28883914;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3993 chr21 28887013 GANGSTR_441006 TGACATTGACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28887013;END=28887024;PERIOD=6;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3994 chr21 28887580 GANGSTR_441007 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28887580;END=28887594;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3995 chr21 28895341 GANGSTR_441009 AATAATAATAATAATAATAAT AATAATAATAATAATAATAATAAT . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.14;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28895341;END=28895361;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=3;DP=52;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|3:1:0.5:52:0:1:0:26.75|25.25:0|0:7.67:-0.06:38:0:-3|1;0|17;3|12:-3|1;0|17;3|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3996 chr21 28897200 GANGSTR_441011 CGATCAATCAATC CAATCAATCAATC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28897205;END=28897212;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:56:0:0:0:28.00|28.00:0|0:15.06:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3997 chr21 28900581 GANGSTR_441012 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28900581;END=28900592;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3998 chr21 28905241 GANGSTR_441013 TTAATTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28905241;END=28905256;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
3999 chr21 28905711 GANGSTR_441014 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28905711;END=28905720;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4000 chr21 28905787 GANGSTR_441015 GTGTGTGTGTGTGTGTGTGTGTGTGT . . . INFRAME_PGEOM=0.99;INFRAME_UP=0.03;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28905787;END=28905812;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=4;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:4:0:29.50|29.50:0|0:.:0:.:0:-2|3;0|28:-2|4;0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4001 chr21 28908835 GANGSTR_441016 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28908835;END=28908846;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4002 chr21 28909500 GANGSTR_441017 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28909500;END=28909511;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|50:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4003 chr21 28911115 GANGSTR_441018 ACAACAACAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28911115;END=28911126;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|47:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4004 chr21 28913190 GANGSTR_441019 TGTATGTATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28913190;END=28913201;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|56:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4005 chr21 28917324 GANGSTR_441020 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28917324;END=28917335;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:2:30.00|30.00:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4006 chr21 28928127 GANGSTR_441021 ATGTATGTATGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28928127;END=28928138;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4007 chr21 28930605 GANGSTR_441022 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28930605;END=28930616;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4008 chr21 28931443 GANGSTR_441023 TTTTATTTTATTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28931443;END=28931467;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4009 chr21 28936156 GANGSTR_441024 TGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28936156;END=28936171;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:1:0:27.00|27.00:0|0:.:0:.:0:-2|1;0|35:-2|1;0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4010 chr21 28938246 GANGSTR_441025 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28938246;END=28938257;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4011 chr21 28939357 GANGSTR_441026 ATATATATATATATAT ATATATATATATATATAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.08;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=28939357;END=28939372;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:38:0:0:0:20.48|17.52:0|0:4.92:-0.25:26:-0.38:0|14;2|10:0|12;2|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4012 chr21 28946178 GANGSTR_441027 TAGAGATAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=28946178;END=28946189;PERIOD=6;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|19:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4013 chr21 28956499 GANGSTR_441028 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28956499;END=28956510;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4014 chr21 28966708 GANGSTR_441029 TGGTTGGTTGGTTGGT TGGTTGGTTGGTTGGTTGGT . . INFRAME_PGEOM=0.99;INFRAME_UP=0.02;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28966708;END=28966723;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=82;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:82:0:0:0:41.00|41.00:0|0:17.59:0:.:0:-6|1;0|4;1|1;4|47:4|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4015 chr21 28967135 GANGSTR_441030 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28967135;END=28967146;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4016 chr21 28969769 GANGSTR_441031 TTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28969769;END=28969788;PERIOD=5;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4017 chr21 28970366 GANGSTR_441032 ACTTGACTTGACTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28970366;END=28970380;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4018 chr21 28975192 GANGSTR_441033 GTTGTTGTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28975192;END=28975203;PERIOD=3;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:5:37.00|37.00:0|0:.:0:.:0:0|53:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4019 chr21 28979310 GANGSTR_441034 CAACCTCAACCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=28979310;END=28979321;PERIOD=6;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|32:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4020 chr21 28981117 GANGSTR_441035 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGT . . INFRAME_PGEOM=1;INFRAME_UP=0.08;INFRAME_DOWN=0.17;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=28981117;END=28981146;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=9,11;DP=54;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:9|11:1:0.5:54:0:3:0:27.72|26.28:0|0:5.82:-0.23:30:-0.15:-4|1;0|4;7|2;9|12;11|11:7|1;9|10;11|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4021 chr21 28985786 GANGSTR_441036 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28985786;END=28985797;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|53:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4022 chr21 28993801 GANGSTR_441037 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28993801;END=28993812;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|47:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4023 chr21 28994183 GANGSTR_441038 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=28994183;END=28994194;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4024 chr21 29001926 GANGSTR_441039 AAATAAATAAATAAATAAAT AAATAAATAAATAAATAAATAAAT . . INFRAME_PGEOM=0.98;INFRAME_UP=0.08;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=29001926;END=29001945;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:43:0:0:0:20.07|22.93:0|0:3.85:-0.17:23:-1.34:-8|2;0|10;4|10:0|10;4|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4025 chr21 29003318 GANGSTR_441040 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29003318;END=29003329;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4026 chr21 29006357 GANGSTR_441041 ATATATATATATAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29006357;END=29006370;PERIOD=2;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:1:0:20.50|20.50:0|0:.:0:.:0:-2|1;0|31:-2|1;0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4027 chr21 29020304 GANGSTR_441043 TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC TATCTATCTATCTATCTATCTATC,TATCTATCTATCTATCTATCTATCTATCTATC . . INFRAME_PGEOM=0.91;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=29020304;END=29020351;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-24,-16;DP=60;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-24|-16:1:0.5:60:0:1:0:29.98|30.02:0|0:28.42:0:36:-0.5:-28|1;-24|14;-16|17:-28|1;-24|14;-16|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4028 chr21 29029674 GANGSTR_441044 TAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29029674;END=29029682;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|53:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4029 chr21 29030273 GANGSTR_441046 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29030273;END=29030284;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.50|32.50:0|0:.:0:.:0:0|49:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4030 chr21 29035906 GANGSTR_441047 AAACAAACAAAC AAACACAAACAAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.9;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29035906;END=29035917;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=2;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:65:0:0:0:28.48|36.52:0|0:140.61:-0.44:60:-0.1:0|22;2|31:0|22;2|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4031 chr21 29036657 GANGSTR_441048 AATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29036657;END=29036671;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4032 chr21 29048439 GANGSTR_441049 AAAATAAAATAAAATAAAAT AAAAAAAAATAAAATAAAAT,AATAAATAAATAAAATAAAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.78;OUTFRAME_UP=0.12;OUTFRAME_DOWN=0.07;START=29048439;END=29048458;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0,1;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=0;AC=1,1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:0|1:1:0.5:52:0:0:3:23.00|29.00:0|0:65.76:-0.35:44:-0.26:-1|1;0|12;1|16;3|2:0|12;1|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4033 chr21 29053863 GANGSTR_441050 ACAAACAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29053863;END=29053874;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4034 chr21 29056719 GANGSTR_441051 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29056719;END=29056730;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|44:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4035 chr21 29060623 GANGSTR_441052 TTGTTGTTGTTGTTGTT TTGTTGTTGTTGTTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29060623;END=29060637;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:67:0:0:0:34.49|32.51:0|0:156.73:-0.05:60:-0.52:-10|1;0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4036 chr21 29061794 GANGSTR_441053 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29061794;END=29061813;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4037 chr21 29068660 GANGSTR_441054 TTTTAATTTTAATTTTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29068660;END=29068677;PERIOD=6;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4038 chr21 29073958 GANGSTR_441055 AAATTAAAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29073958;END=29073969;PERIOD=6;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|27:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4039 chr21 29074541 GANGSTR_441056 CACCACCACCAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.06;START=29074541;END=29074552;PERIOD=3;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:1:21.00|21.00:0|0:.:0:.:0:-1|1;0|30:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4040 chr21 29074622 GANGSTR_441057 ATGTATGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=29074622;END=29074629;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:1:35.50|35.50:0|0:.:0:.:0:0|62:0|61:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4041 chr21 29075786 GANGSTR_441058 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29075786;END=29075797;PERIOD=2;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|51:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4042 chr21 29076132 GANGSTR_441059 TTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29076132;END=29076139;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4043 chr21 29076237 GANGSTR_441060 TTCTTCTTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29076237;END=29076248;PERIOD=3;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|56:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4044 chr21 29077505 GANGSTR_441061 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29077505;END=29077516;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4045 chr21 29078485 GANGSTR_441062 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29078485;END=29078496;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4046 chr21 29082490 GANGSTR_441063 CTTCCTTCCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29082490;END=29082501;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|36:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4047 chr21 29083395 GANGSTR_441064 ATTTATTTATTATTATTA AGTTAGTTTTTTTTTATTTATTATTATTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29083401;END=29083412;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=11;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|11:1:0.5:41:0:0:4:33.49|7.51:0|0:14.1:-5.21:34:-0.98:0|27:0|23;11|4:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4048 chr21 29086681 GANGSTR_441065 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29086681;END=29086692;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4049 chr21 29090412 GANGSTR_441066 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29090412;END=29090427;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:25.54|44.46:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4050 chr21 29099546 GANGSTR_441067 ATGCATGCATGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29099546;END=29099557;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4051 chr21 29102308 GANGSTR_441068 GAAGAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29102308;END=29102316;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4052 chr21 29104949 GANGSTR_441069 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29104949;END=29104960;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4053 chr21 29105617 GANGSTR_441070 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29105617;END=29105628;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4054 chr21 29111137 GANGSTR_441071 TTGTTTTGTTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29111137;END=29111151;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4055 chr21 29112998 GANGSTR_441073 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29112998;END=29113009;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4056 chr21 29120247 GANGSTR_441074 TTAAATTAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29120247;END=29120256;PERIOD=5;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4057 chr21 29120957 GANGSTR_441075 TTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=29120957;END=29120971;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:1:1:26.50|26.50:0|0:.:0:.:0:-1|1;0|35:-5|1;0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4058 chr21 29121122 GANGSTR_441076 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29121122;END=29121133;PERIOD=2;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|34:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4059 chr21 29121658 GANGSTR_441077 TTCCTTCCTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29121658;END=29121669;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4060 chr21 29144397 GANGSTR_441078 TGTGTGTGTGTGTGTGTGTGTGTGTGTT TGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.14;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29144397;END=29144422;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=56;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:56:0:2:0:28.00|28.00:0|0:12.89:0:.:0:-4|2;-2|34;0|2:-4|1;-2|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4061 chr21 29154311 GANGSTR_441079 AGAGAGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29154311;END=29154326;PERIOD=2;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:1:38.00|38.00:0|0:.:0:.:0:-18|1;0|52:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4062 chr21 29157482 GANGSTR_441080 TCTTCTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29157482;END=29157491;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4063 chr21 29160033 GANGSTR_441081 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29160033;END=29160044;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4064 chr21 29162956 GANGSTR_441082 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29162956;END=29162971;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4065 chr21 29165113 GANGSTR_441083 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29165113;END=29165124;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4066 chr21 29169641 GANGSTR_441085 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.96;INFRAME_UP=0.07;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=29169641;END=29169692;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-16,-10;DP=51;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 2|1:-10|-16:1:0.5:51:0:2:1:25.88|25.12:0|0:27.92:-0.08:24:0:-16|10;-12|1;-10|8;-5|1:-16|9;-12|1;-10|8;-8|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4067 chr21 29176646 GANGSTR_441086 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29176646;END=29176657;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4068 chr21 29180852 GANGSTR_441087 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29180852;END=29180863;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:1:33.00|33.00:0|0:.:0:.:0:-5|1;0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4069 chr21 29182848 GANGSTR_441088 ACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=29182848;END=29182885;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=47;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:47:0:1:1:22.52|24.48:0|0:39.56:-0.08:24:-0.17:-6|1;-4|12;0|10:-6|1;-4|11;0|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4070 chr21 29187398 GANGSTR_441089 ATATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29187398;END=29187413;PERIOD=2;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4071 chr21 29187912 GANGSTR_441090 TGTGTATGTGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29187912;END=29187923;PERIOD=6;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4072 chr21 29190856 GANGSTR_441091 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29190856;END=29190867;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|33:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4073 chr21 29191964 GANGSTR_441092 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29191964;END=29191975;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:32.50|25.50:0|0:.:0:.:0:0|44:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4074 chr21 29192263 GANGSTR_441093 TGTTGTTGTTGT . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=29192263;END=29192274;PERIOD=3;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:1:0:19.00|19.00:0|0:.:0:.:0:-3|1;0|23:-3|1;0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4075 chr21 29192351 GANGSTR_441094 TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAC TTTATTTATTTATTTATTTATTTATTTATTTATTTAT . . INFRAME_PGEOM=0.96;INFRAME_UP=0.13;INFRAME_DOWN=0.18;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=29192351;END=29192390;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=60;DSNP=0;DSTUTTER=7;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:60:0:7:0:30.00|30.00:0|0:9.85:0:.:0:-12|1;-8|2;-4|10;0|1:-12|1;-8|3;-4|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4076 chr21 29196012 GANGSTR_441095 ATAGATAGATAGATAGATAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29196012;END=29196031;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:-4|1;0|38:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4077 chr21 29197456 GANGSTR_441096 GGGAGGGAGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29197456;END=29197467;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:2:28.00|28.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4078 chr21 29197965 GANGSTR_441097 TATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29197965;END=29197974;PERIOD=5;NSKIP=0;NFILT=0;DP=85;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:85:0:0:0:42.50|42.50:0|0:.:0:.:0:0|58:0|58:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4079 chr21 29198634 GANGSTR_441098 TTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29198634;END=29198648;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4080 chr21 29199435 GANGSTR_441099 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.98;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=29199435;END=29199464;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=4;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:4:0:25.00|25.00:0|0:.:0:.:0:-2|1;0|21;2|1:-2|1;0|18;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4081 chr21 29199698 GANGSTR_441100 CTTTTTCTTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29199698;END=29199709;PERIOD=6;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|35:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4082 chr21 29201914 GANGSTR_441101 GAGAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29201914;END=29201927;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4083 chr21 29207326 GANGSTR_441102 TATTATTATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29207326;END=29207343;PERIOD=3;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4084 chr21 29208436 GANGSTR_441103 AAATTAAATTAAATTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29208436;END=29208455;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4085 chr21 29215603 GANGSTR_441104 TTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29215603;END=29215617;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.50|32.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4086 chr21 29216116 GANGSTR_441105 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29216116;END=29216127;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|45:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4087 chr21 29217887 GANGSTR_441106 TATATATATATATA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29217887;END=29217900;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=1;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:1:3:30.50|30.50:0|0:.:0:.:0:-2|1;0|38:-2|1;0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4088 chr21 29218300 GANGSTR_441107 CACACACACACA . . . INFRAME_PGEOM=0.98;INFRAME_UP=0.13;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=29218300;END=29218311;PERIOD=2;NSKIP=0;NFILT=0;DP=115;DSNP=0;DSTUTTER=13;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:115:0:13:0:56.49|58.51:0|0:.:0:.:0:0|90;2|13:0|85;2|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4089 chr21 29218740 GANGSTR_441108 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29218740;END=29218751;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4090 chr21 29219037 GANGSTR_441109 ATTTTAATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29219037;END=29219048;PERIOD=6;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|51:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4091 chr21 29221587 GANGSTR_441110 GAGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29221587;END=29221594;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4092 chr21 29233847 GANGSTR_441111 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29233847;END=29233858;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4093 chr21 29234829 GANGSTR_441112 GTTGGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29234829;END=29234836;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4094 chr21 29238500 GANGSTR_441113 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29238500;END=29238511;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4095 chr21 29255750 GANGSTR_441114 TCTATCTATCTATCTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29255750;END=29255765;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:1:35.00|35.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4096 chr21 29258383 GANGSTR_441115 AAAAGAAAAGAATTG AAAAGAAAAGAATTC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29258383;END=29258392;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:65:0:0:1:33.01|31.99:0|0:102.86:-0:59:-1.19:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4097 chr21 29267254 GANGSTR_441116 AAGAAGAAGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29267254;END=29267265;PERIOD=3;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:1:19.95|21.05:0|0:.:0:.:0:0|31:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4098 chr21 29267324 GANGSTR_441117 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29267324;END=29267335;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:27.99|31.01:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4099 chr21 29272195 GANGSTR_441118 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29272195;END=29272214;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4100 chr21 29272575 GANGSTR_441119 CAAAAGCAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29272575;END=29272586;PERIOD=6;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4101 chr21 29274905 GANGSTR_441120 AAATTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29274905;END=29274914;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4102 chr21 29276084 GANGSTR_441121 ATATATATATATATATAT ATATATATATATATAT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.04;INFRAME_DOWN=0.14;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29276084;END=29276101;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:58:0:0:2:22.95|35.05:0|0:16.77:-1.01:53:-0.24:-4|2;-2|23;0|14:-2|22;0|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4103 chr21 29278803 GANGSTR_441123 TTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29278803;END=29278810;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4104 chr21 29282406 GANGSTR_441124 TAGTAGTAGTAGTAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29282406;END=29282420;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|40:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4105 chr21 29284316 GANGSTR_441125 GAATGAATGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29284316;END=29284327;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4106 chr21 29289659 GANGSTR_441126 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29289659;END=29289670;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|54:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4107 chr21 29291617 GANGSTR_441127 TGTTTTGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29291617;END=29291636;PERIOD=5;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4108 chr21 29292783 GANGSTR_441128 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29292783;END=29292794;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4109 chr21 29294206 GANGSTR_441129 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29294206;END=29294217;PERIOD=3;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4110 chr21 29295899 GANGSTR_441130 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29295899;END=29295910;PERIOD=4;NSKIP=0;NFILT=0;DP=81;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:81:0:1:1:40.50|40.50:0|0:.:0:.:0:0|55;3|1:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4111 chr21 29299515 GANGSTR_441131 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29299515;END=29299526;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:1:35.00|35.00:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4112 chr21 29305136 GANGSTR_441132 AACAAACAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29305136;END=29305147;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:5:27.00|27.00:0|0:.:0:.:0:0|47:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4113 chr21 29310376 GANGSTR_441133 CAAAACAAAACAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29310376;END=29310400;PERIOD=5;NSKIP=0;NFILT=0;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:78:0:0:1:39.00|39.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4114 chr21 29311686 GANGSTR_441134 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29311686;END=29311695;PERIOD=5;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:1:38.50|38.50:0|0:.:0:.:0:0|61:0|61:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4115 chr21 29316358 GANGSTR_441135 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29316358;END=29316369;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4116 chr21 29316696 GANGSTR_441136 CATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29316696;END=29316707;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|40:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4117 chr21 29318609 GANGSTR_441137 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29318609;END=29318620;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4118 chr21 29322900 GANGSTR_441138 TTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29322900;END=29322909;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4119 chr21 29324035 GANGSTR_441139 AATAAAATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29324035;END=29324049;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4120 chr21 29330515 GANGSTR_441140 ACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.72;INFRAME_UP=0.04;INFRAME_DOWN=0.21;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=29330515;END=29330550;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=12;DP=62;DSNP=0;DSTUTTER=6;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|12:1:0.5:62:0:6:1:33.79|28.21:0|0:45.19:-0.13:35:0:-14|3;-12|1;-6|1;-4|1;-2|3;0|14;2|1;8|1;12|6;14|1:-4|1;-2|3;0|12;8|1;12|6;14|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4121 chr21 29334028 GANGSTR_441141 TGAATTGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29334028;END=29334037;PERIOD=5;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:24.50|16.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4122 chr21 29336740 GANGSTR_441142 TCTTTCTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29336740;END=29336751;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:25.50|21.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4123 chr21 29342532 GANGSTR_441144 ATAAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29342532;END=29342541;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:2:29.50|29.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4124 chr21 29347118 GANGSTR_441145 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29347118;END=29347129;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|54:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4125 chr21 29349646 GANGSTR_441146 ACACACACACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29349646;END=29349667;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|33:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4126 chr21 29350870 GANGSTR_441147 TTTGGTTTGGTTTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29350870;END=29350884;PERIOD=5;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4127 chr21 29351037 GANGSTR_441148 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29351037;END=29351048;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4128 chr21 29352755 GANGSTR_441149 ATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29352755;END=29352762;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:35.50|26.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4129 chr21 29357575 GANGSTR_441150 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29357575;END=29357586;PERIOD=2;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4130 chr21 29361528 GANGSTR_441151 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29361528;END=29361537;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4131 chr21 29362729 GANGSTR_441152 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29362729;END=29362740;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|53:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4132 chr21 29363777 GANGSTR_441153 ATGAATGAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29363777;END=29363788;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4133 chr21 29364959 GANGSTR_441154 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29364959;END=29364970;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4134 chr21 29371965 GANGSTR_441155 TATTATTATTATATT TATTATTATTATATG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29371965;END=29371976;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:66:0:0:0:30.50|35.50:0|0:101.02:-0.22:59:-1.42:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4135 chr21 29377334 GANGSTR_441156 ATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29377334;END=29377349;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:35.37|38.63:0|0:.:0:.:0:0|42:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4136 chr21 29380527 GANGSTR_441157 CTTTTCTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29380527;END=29380536;PERIOD=5;NSKIP=0;NFILT=0;DP=82;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:82:0:0:5:41.00|41.00:0|0:.:0:.:0:0|59:0|58:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4137 chr21 29381465 GANGSTR_441158 TTAGTTTAGTTTAGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29381465;END=29381479;PERIOD=5;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:0:0:40.00|40.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4138 chr21 29384954 GANGSTR_441159 GTATTAGTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29384954;END=29384965;PERIOD=6;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|39:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4139 chr21 29391256 GANGSTR_441161 CTCTGCTCTGCTCTGCTCTGG CTCTGCTCTGCTCTGCTCTGC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29391256;END=29391275;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:56:0:0:0:20.38|35.62:0|0:48.18:-1.4:47:-0.45:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4140 chr21 29395514 GANGSTR_441162 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29395514;END=29395525;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4141 chr21 29399240 GANGSTR_441163 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29399240;END=29399251;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|47:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4142 chr21 29402228 GANGSTR_441164 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29402228;END=29402239;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4143 chr21 29409051 GANGSTR_441165 CAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29409051;END=29409058;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:1:0:24.50|24.50:0|0:.:0:.:0:0|37:-8|1;0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4144 chr21 29412474 GANGSTR_441166 CAACCAACCAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29412474;END=29412485;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4145 chr21 29415017 GANGSTR_441167 CAGCACAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29415017;END=29415026;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4146 chr21 29422243 GANGSTR_441168 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=29422243;END=29422254;PERIOD=4;NSKIP=0;NFILT=0;DP=34;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:34:0:0:4:17.00|17.00:0|0:.:0:.:0:0|23:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4147 chr21 29422544 GANGSTR_441169 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29422544;END=29422555;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4148 chr21 29422866 GANGSTR_441170 TGTATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29422866;END=29422873;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|54:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4149 chr21 29425918 GANGSTR_441172 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.88;INFRAME_UP=0.06;INFRAME_DOWN=0.18;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=29425918;END=29425955;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6,10;DP=65;DSNP=0;DSTUTTER=6;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:6|10:1:0.5:65:0:6:2:33.09|31.91:0|0:12.16:-0.22:32:-0.31:-14|2;-10|1;-4|2;-3|7;-2|2;0|2;4|3;6|10;8|1;9|1;10|6:4|2;6|10;8|2;10|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4150 chr21 29441546 GANGSTR_441174 TGTATGTATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29441546;END=29441557;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|35:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4151 chr21 29443588 GANGSTR_441175 AAATAAATAAATAAATAAATAAATAAAT AAATAAATAAATAAATAAATAAATAAATAAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=29443588;END=29443615;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:57:0:0:0:28.50|28.50:0|0:7.32:0:.:0:-9|1;4|21:4|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4152 chr21 29446129 GANGSTR_441176 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29446129;END=29446140;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|27:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4153 chr21 29450697 GANGSTR_441177 ATTAAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29450697;END=29450706;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4154 chr21 29451055 GANGSTR_441178 ATTAATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29451055;END=29451066;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.50|30.50:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4155 chr21 29459201 GANGSTR_441179 TTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29459201;END=29459210;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4156 chr21 29470185 GANGSTR_441180 GAAAGAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29470185;END=29470200;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4157 chr21 29476840 GANGSTR_441181 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29476840;END=29476851;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4158 chr21 29483182 GANGSTR_441182 TTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29483182;END=29483189;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4159 chr21 29487088 GANGSTR_441183 TGTGTATATATATATATATATATATATA TATATATATATATATATATATATATACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29487092;END=29487115;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=54;DSNP=0;DSTUTTER=4;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:54:0:4:0:32.48|21.52:0|0:118.5:-0.77:53:-0.24:0|30:-2|2;0|25;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4160 chr21 29487704 GANGSTR_441184 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29487704;END=29487715;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|54:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4161 chr21 29488087 GANGSTR_441185 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29488087;END=29488098;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4162 chr21 29488418 GANGSTR_441186 TTTAATTTTTAATTTTT TTTAATTTTTAATTTTC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29488418;END=29488431;PERIOD=7;NSKIP=0;NFILT=0;BPDIFFS=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=5;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:65:0:0:0:39.01|25.99:0|0:90.67:-0.87:65:-0.51:0|39:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4163 chr21 29490288 GANGSTR_441187 AAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29490288;END=29490295;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:27.50|24.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4164 chr21 29490623 GANGSTR_441188 TAGGCTAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29490623;END=29490632;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|56:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4165 chr21 29491807 GANGSTR_441189 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29491807;END=29491818;PERIOD=2;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:22.50|17.50:0|0:.:0:.:0:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4166 chr21 29499738 GANGSTR_441190 CAAAACAAAACAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29499738;END=29499762;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4167 chr21 29501308 GANGSTR_441191 ATTATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29501308;END=29501325;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:2:21.50|23.50:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4168 chr21 29506776 GANGSTR_441192 GAATGAATGAATGAATGAATGAATGAATGAAT GAATGAATGAATGAATGAATGAATGAAT . . INFRAME_PGEOM=0.96;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29506776;END=29506807;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:53:0:0:0:24.86|28.14:0|0:7.04:-0.22:34:0:-4|18;0|15:-4|18;0|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4169 chr21 29509090 GANGSTR_441194 CACAGCACAGCACAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29509090;END=29509104;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4170 chr21 29510568 GANGSTR_441195 TCATCATCATCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29510568;END=29510579;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.50|32.50:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4171 chr21 29513068 GANGSTR_441196 TACATACATACATACA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29513068;END=29513083;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:1:0:27.50|27.50:0|0:.:0:.:0:-4|1;0|37:-4|1;0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4172 chr21 29514057 GANGSTR_441197 ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT ATTTATTTATTTATTTATTTATTTATTTATTT . . INFRAME_PGEOM=0.9;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=29514057;END=29514096;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-8;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-8:1:0.5:43:0:0:0:18.01|24.99:0|0:14.68:-0.55:31:0:-8|9;0|4:-8|9;0|4:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4173 chr21 29519124 GANGSTR_441198 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29519124;END=29519135;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4174 chr21 29526886 GANGSTR_441199 GAAGAGAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29526886;END=29526895;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4175 chr21 29528789 GANGSTR_441200 TCCTCCTCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29528789;END=29528800;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4176 chr21 29541964 GANGSTR_441201 AATTAATTAATTAATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29541964;END=29541987;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4177 chr21 29544294 GANGSTR_441202 AAATAAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29544294;END=29544303;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4178 chr21 29545356 GANGSTR_441203 TATATATATATATATATATATATA TATATATATATATATTTTTTTTTTTTT . . INFRAME_PGEOM=0.99;INFRAME_UP=0.12;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.93;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=29545356;END=29545379;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=3;DP=28;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|3:1:0.5:28:0:2:1:10.50|17.50:0|0:82.2:-0.78:19:-0.5:-23|1;-22|1;-21|2;-19|2;0|5;2|1;3|6:0|5;1|1;3|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4179 chr21 29547289 GANGSTR_441204 AAAAAATAAAATAAAAT ATAAAATAAAATAAAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29547291;END=29547305;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=6;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:64:0:0:1:37.50|26.50:0|0:72.91:-0.73:57:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4180 chr21 29556368 GANGSTR_441205 AGCCTAGCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29556368;END=29556377;PERIOD=5;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:1:17.00|22.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4181 chr21 29567842 GANGSTR_441206 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29567842;END=29567853;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|56:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4182 chr21 29577824 GANGSTR_441207 GAATGAATGAATGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29577824;END=29577839;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4183 chr21 29578018 GANGSTR_441208 TAAAAATAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29578018;END=29578029;PERIOD=6;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|30:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4184 chr21 29579496 GANGSTR_441209 AACAACAACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29579496;END=29579516;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4185 chr21 29590023 GANGSTR_441210 ATATAATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29590023;END=29590032;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4186 chr21 29590634 GANGSTR_441211 ATAAAATAAAATAAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29590634;END=29590653;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4187 chr21 29600062 GANGSTR_441213 GGAAGGAAGGAAGGAAGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=29600062;END=29600081;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4188 chr21 29601012 GANGSTR_441214 GAGGGAGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29601012;END=29601023;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4189 chr21 29605493 GANGSTR_441215 TTTTCTTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29605493;END=29605507;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4190 chr21 29605977 GANGSTR_441216 ATGAATGAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29605977;END=29605988;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4191 chr21 29610310 GANGSTR_441217 CACACACACACACACACACACACACACACA CTCACACACACACACACACACACACACACACACACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29610310;END=29610339;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|6:1:0.5:46:0:0:0:32.99|13.01:0|0:43.15:-2.65:40:0:0|25;2|1;6|4:0|21;6|4:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4192 chr21 29615726 GANGSTR_441218 AAAATAAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29615726;END=29615745;PERIOD=5;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4193 chr21 29617037 GANGSTR_441219 ATATATATATATAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29617037;END=29617050;PERIOD=2;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:1:0:32.00|32.00:0|0:.:0:.:0:0|49;2|1:0|49;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4194 chr21 29619852 GANGSTR_441220 AGAAGAAGAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29619852;END=29619863;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4195 chr21 29620764 GANGSTR_441221 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29620764;END=29620775;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4196 chr21 29626888 GANGSTR_441222 TTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29626888;END=29626907;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4197 chr21 29627590 GANGSTR_441223 ACACACACACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29627590;END=29627611;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4198 chr21 29629995 GANGSTR_441225 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29629995;END=29630006;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4199 chr21 29631122 GANGSTR_441226 TCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29631122;END=29631135;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.50|32.50:0|0:.:0:.:0:0|51:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4200 chr21 29634896 GANGSTR_441227 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29634896;END=29634907;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4201 chr21 29636089 GANGSTR_441228 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29636089;END=29636104;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|33:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4202 chr21 29638025 GANGSTR_441229 ACAAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29638025;END=29638034;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4203 chr21 29638891 GANGSTR_441230 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29638891;END=29638902;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4204 chr21 29639323 GANGSTR_441231 ACATACATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29639323;END=29639334;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4205 chr21 29650597 GANGSTR_441232 TAAAATAAAATAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29650597;END=29650611;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4206 chr21 29652238 GANGSTR_441233 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29652238;END=29652249;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:2:24.50|24.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4207 chr21 29652581 GANGSTR_441234 AAGAAAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29652581;END=29652592;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:1:33.50|33.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4208 chr21 29658810 GANGSTR_441235 AGAATAGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29658810;END=29658819;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4209 chr21 29664685 GANGSTR_441236 GAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGA . . INFRAME_PGEOM=0.98;INFRAME_UP=0.02;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29664685;END=29664706;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6;DP=86;DSNP=0;DSTUTTER=5;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:6|6:1:1:86:0:5:1:43.00|43.00:0|0:18.11:0:.:0:-33|3;-16|1;0|5;4|4;6|45:4|4;6|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4210 chr21 29670399 GANGSTR_441237 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29670399;END=29670410;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4211 chr21 29674255 GANGSTR_441238 GTTGGTTGGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29674255;END=29674266;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4212 chr21 29683621 GANGSTR_441239 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29683621;END=29683632;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|53:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4213 chr21 29684922 GANGSTR_441240 AAAGAGAAAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29684922;END=29684933;PERIOD=6;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|34:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4214 chr21 29696826 GANGSTR_441241 CACACACACACACACACACACACACACACA CACACACACACACACACACACACACACACACACACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.22;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=29696826;END=29696855;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6;DP=67;DSNP=0;DSTUTTER=15;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:6|6:1:1:67:0:15:0:33.50|33.50:0|0:10.52:0:.:0:-15|2;-13|2;-5|1;0|1;4|1;6|15;8|9:4|1;6|16;8|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4215 chr21 29720348 GANGSTR_441243 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29720348;END=29720359;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4216 chr21 29722925 GANGSTR_441244 GAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGA . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29722925;END=29722946;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=48;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:48:0:1:0:24.00|24.00:0|0:9.35:0:.:0:-4|1;-2|33:-4|1;-2|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4217 chr21 29731266 GANGSTR_441246 ATTTAATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29731266;END=29731275;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:1:23.00|23.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4218 chr21 29741067 GANGSTR_441249 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29741067;END=29741078;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:22.80|37.20:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4219 chr21 29743088 GANGSTR_441250 TTGTTTGTTTGTA TTGTTTGTTTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.97;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29743088;END=29743099;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:73:0:0:0:34.00|39.00:0|0:99.57:-0.22:57:0:-1|27;0|24:-1|27;0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4220 chr21 29743221 GANGSTR_441251 TTTATTATTTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29743221;END=29743234;PERIOD=7;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|41:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4221 chr21 29744309 GANGSTR_441252 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29744309;END=29744323;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:31.50|28.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4222 chr21 29747734 GANGSTR_441253 GTTTTGTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29747734;END=29747743;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:1:34.50|34.50:0|0:.:0:.:0:-5|1;0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4223 chr21 29750725 GANGSTR_441254 TAGGTTAGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29750725;END=29750734;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:2:30.50|30.50:0|0:.:0:.:0:-14|1;0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4224 chr21 29760328 GANGSTR_441255 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.98;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=29760328;END=29760361;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-8;DP=51;DSNP=0;DSTUTTER=4;DFLANKINDEL=4;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|0:-8|0:1:0.5:51:0:4:4:29.47|21.53:0|0:60.43:-0.64:34:-0.34:-10|2;-8|15;-6|1;-2|1;0|12:-10|2;-8|15;-6|1;-2|1;0|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4225 chr21 29769747 GANGSTR_441257 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29769747;END=29769758;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4226 chr21 29773950 GANGSTR_441258 TTCTTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29773950;END=29773958;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4227 chr21 29780161 GANGSTR_441260 GACAGACAGACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29780161;END=29780172;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:24.00|27.00:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4228 chr21 29782616 GANGSTR_441261 AAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29782616;END=29782625;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4229 chr21 29784985 GANGSTR_441262 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=29784985;END=29784999;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4230 chr21 29786993 GANGSTR_441263 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29786993;END=29787004;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:1:33.50|33.50:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4231 chr21 29788842 GANGSTR_441264 TTGGTTGGTTGGTTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29788842;END=29788857;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4232 chr21 29789754 GANGSTR_441266 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGC TGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGT,TGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGC . . INFRAME_PGEOM=0.96;INFRAME_UP=0.1;INFRAME_DOWN=0.15;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=29789754;END=29789791;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-8,6;DP=52;DSNP=0;DSTUTTER=4;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-8|6:1:0.5:52:0:4:0:21.46|30.54:0|0:96.97:-0.76:35:-0.86:-12|1;-8|9;-1|1;4|3;6|5:-8|7;4|3;6|5:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4233 chr21 29792472 GANGSTR_441267 ATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29792472;END=29792485;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|42:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4234 chr21 29796250 GANGSTR_441268 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29796250;END=29796261;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.00|29.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4235 chr21 29805502 GANGSTR_441269 CAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29805502;END=29805517;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4236 chr21 29806982 GANGSTR_441270 TTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29806982;END=29807001;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4237 chr21 29808616 GANGSTR_441271 TTATTTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29808616;END=29808635;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4238 chr21 29811001 GANGSTR_441272 ACACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29811001;END=29811014;PERIOD=2;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:1:0:37.50|37.50:0|0:.:0:.:0:0|57;2|1:0|56;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4239 chr21 29815380 GANGSTR_441273 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29815380;END=29815391;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4240 chr21 29833373 GANGSTR_441274 AATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29833373;END=29833380;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4241 chr21 29836060 GANGSTR_441275 AGACAAACAAACAAACAAACAA AAAACAAACAAACAAACAAACAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.02;START=29836062;END=29836081;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=1;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:1|1:1:1:69:0:0:5:34.50|34.50:0|0:16.86:0:.:0:-3|3;0|40;1|1;2|1:1|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4242 chr21 29840884 GANGSTR_441276 TTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29840884;END=29840893;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4243 chr21 29849118 GANGSTR_441277 AGAAGAAGAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29849118;END=29849129;PERIOD=3;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4244 chr21 29854186 GANGSTR_441278 ATCATCATCATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29854186;END=29854197;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|54:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4245 chr21 29858058 GANGSTR_441279 TCCCTCCCTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29858058;END=29858069;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4246 chr21 29858925 GANGSTR_441280 AAATAAATAAATAAATAAATAAAT AAATAAATAAATAAATAAATAAATAAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29858925;END=29858948;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:66:0:0:0:33.00|33.00:0|0:10.68:0:.:0:0|2;4|30:4|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4247 chr21 29864906 GANGSTR_441281 ACAAACAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29864906;END=29864917;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4248 chr21 29865088 GANGSTR_441282 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29865088;END=29865103;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:40.56|31.44:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4249 chr21 29870711 GANGSTR_441283 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29870711;END=29870722;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4250 chr21 29870826 GANGSTR_441284 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29870826;END=29870837;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4251 chr21 29880025 GANGSTR_441285 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29880025;END=29880036;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4252 chr21 29882148 GANGSTR_441286 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29882148;END=29882163;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4253 chr21 29887745 GANGSTR_441287 TGTTGTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29887745;END=29887753;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4254 chr21 29888936 GANGSTR_441288 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29888936;END=29888947;PERIOD=2;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:1:20.00|20.00:0|0:.:0:.:0:0|27;9|1:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4255 chr21 29889109 GANGSTR_441289 ATATATATATATATATATAT ATATATATATATATATATATAT,ATATATATATATATATATATATAT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.1;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=29889109;END=29889128;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2,4;DP=27;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:2|4:0.98:0.49:27:0:0:0:12.77|14.23:0|0:1.62:-0.1:14:-1.59:-11|1;-5|1;2|5;4|7:2|4;4|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4256 chr21 29892299 GANGSTR_441290 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29892299;END=29892310;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|49:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4257 chr21 29902673 GANGSTR_441292 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29902673;END=29902684;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4258 chr21 29912734 GANGSTR_441293 TATATATATATATATA TATATATATATATATATA . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=29912734;END=29912749;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=36;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:36:0:1:0:18.00|18.00:0|0:5.46:0:.:0:-13|1;0|1;2|21:0|1;2|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4259 chr21 29930163 GANGSTR_441295 TGGTGGTGGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29930163;END=29930174;PERIOD=3;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4260 chr21 29935493 GANGSTR_441296 CTCTCCCTCTCCCTCTCCCTCTCC CTCTCCCTCTCCCTCTCCCTCTCCCTCTCC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29935493;END=29935516;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=6;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:6|6:1:1:58:0:0:0:29.00|29.00:0|0:11.08:0:.:0:-11|11;-5|1;6|22:6|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4261 chr21 29941950 GANGSTR_441298 ACACACACACACACACAC ACACACACACACACACACAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29941950;END=29941967;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:47:0:0:0:23.50|23.50:0|0:10.14:0:.:0:2|34:2|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4262 chr21 29945034 GANGSTR_441299 ATAAAATAAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=29945034;END=29945048;PERIOD=5;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:1:37.50|37.50:0|0:.:0:.:0:-1|1;0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4263 chr21 29945995 GANGSTR_441301 TATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29945995;END=29946003;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4264 chr21 29948070 GANGSTR_441302 TTCCTTCCTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29948070;END=29948081;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:1:1:27.00|27.00:0|0:.:0:.:0:0|42:-4|1;0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4265 chr21 29949030 GANGSTR_441303 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29949030;END=29949044;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4266 chr21 29957652 GANGSTR_441304 TAAATAAATAAATAAATAAATAAATAAATAAATAAA . . . INFRAME_PGEOM=0.93;INFRAME_UP=0.16;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=29957652;END=29957687;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=6;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:6:0:24.50|30.50:0|0:.:0:.:0:-4|1;0|10;4|3:0|8;4|3:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4267 chr21 29968096 GANGSTR_441305 TTTATTTATTTATTTATTTATTTA TTTATTTATTTATTTATTTATTTATTTA . . INFRAME_PGEOM=0.98;INFRAME_UP=0.07;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.06;START=29968096;END=29968119;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:54:0:0:0:23.75|30.25:0|0:5.91:-0.64:34:-0.8:-1|1;0|12;1|3;2|1;4|15:0|12;4|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4268 chr21 29973927 GANGSTR_441306 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=29973927;END=29973966;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-10;DP=66;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-10:1:0.5:66:0:1:2:38.02|27.98:0|0:61.05:-0.96:32:0:-12|1;-10|10;0|15:-10|10;-2|1;0|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4269 chr21 29974592 GANGSTR_441307 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29974592;END=29974603;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4270 chr21 29974720 GANGSTR_441308 AATAAATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29974720;END=29974735;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4271 chr21 29975798 GANGSTR_441309 ATAGATAGATAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29975798;END=29975809;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:35.00|25.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4272 chr21 29978062 GANGSTR_441311 TGTGTATATGTGTATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29978062;END=29978077;PERIOD=8;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|44:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4273 chr21 29978556 GANGSTR_441312 AAACAAAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29978556;END=29978575;PERIOD=5;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4274 chr21 29979764 GANGSTR_441313 AATAAATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29979764;END=29979779;PERIOD=4;NSKIP=0;NFILT=0;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:78:0:0:0:39.00|39.00:0|0:.:0:.:0:0|51:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4275 chr21 29985773 GANGSTR_441314 AATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=29985773;END=29985782;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4276 chr21 29989361 GANGSTR_441315 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=29989361;END=29989372;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4277 chr21 30003247 GANGSTR_441316 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30003247;END=30003258;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:2:25.00|25.00:0|0:.:0:.:0:-9|1;0|34:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4278 chr21 30010980 GANGSTR_441317 CAGCTCAGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30010980;END=30010989;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4279 chr21 30014102 GANGSTR_441318 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30014102;END=30014113;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4280 chr21 30016763 GANGSTR_441319 CCACCACCACCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30016763;END=30016774;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4281 chr21 30021099 GANGSTR_441320 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30021099;END=30021110;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4282 chr21 30026696 GANGSTR_441321 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30026696;END=30026707;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4283 chr21 30035616 GANGSTR_441322 CAGCCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30035616;END=30035623;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4284 chr21 30036287 GANGSTR_441323 ATACATACATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30036287;END=30036298;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|52:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4285 chr21 30036929 GANGSTR_441324 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30036929;END=30036940;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4286 chr21 30038530 GANGSTR_441325 GGAAGGAAGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30038530;END=30038541;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4287 chr21 30063489 GANGSTR_441327 TCATTCATTCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30063489;END=30063500;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4288 chr21 30064783 GANGSTR_441328 AAGTAAAGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30064783;END=30064792;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4289 chr21 30068297 GANGSTR_441329 TATATATATATATA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30068297;END=30068310;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:1:0:28.00|28.00:0|0:.:0:.:0:-2|1;0|42:-2|1;0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4290 chr21 30070174 GANGSTR_441330 ACAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30070174;END=30070181;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|56:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4291 chr21 30070653 GANGSTR_441331 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.02;START=30070653;END=30070664;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|42;1|1:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4292 chr21 30073153 GANGSTR_441332 ACACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30073153;END=30073168;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4293 chr21 30085258 GANGSTR_441333 CATACATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30085258;END=30085265;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4294 chr21 30091815 GANGSTR_441334 CTTTGCCTTTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30091815;END=30091826;PERIOD=6;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:1:24.50|24.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4295 chr21 30094223 GANGSTR_441335 CACACACACACACACACACACACACACACACACACACA . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.04;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=30094223;END=30094260;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=4;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:4:2:25.50|25.50:0|0:.:0:.:0:-13|1;-2|3;0|19;2|1:-2|3;0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4296 chr21 30095206 GANGSTR_441336 CAAACAAACAAACAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30095206;END=30095233;PERIOD=4;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:2:38.00|38.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4297 chr21 30096870 GANGSTR_441337 TTGTTTGTTTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30096870;END=30096889;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4298 chr21 30105604 GANGSTR_441338 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30105604;END=30105623;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4299 chr21 30116583 GANGSTR_441339 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30116583;END=30116592;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4300 chr21 30123998 GANGSTR_441340 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30123998;END=30124013;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4301 chr21 30124291 GANGSTR_441341 AAGAAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.02;START=30124291;END=30124300;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|36;1|1:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4302 chr21 30128549 GANGSTR_441342 CAACCAACCAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30128549;END=30128560;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4303 chr21 30134726 GANGSTR_441343 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30134726;END=30134737;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4304 chr21 30143329 GANGSTR_441344 ACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30143329;END=30143342;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|46:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4305 chr21 30147759 GANGSTR_441345 GTGTGTGTGTGTGT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30147759;END=30147772;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:1:0:26.50|26.50:0|0:.:0:.:0:-2|1;0|38:-2|1;0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4306 chr21 30151545 GANGSTR_441346 ATGGATGGATGGATGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30151545;END=30151560;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4307 chr21 30156173 GANGSTR_441347 CGGCCGGCCGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30156173;END=30156184;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4308 chr21 30160602 GANGSTR_441348 ACACACACACACACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30160602;END=30160625;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:1:0:27.00|27.00:0|0:.:0:.:0:-2|1;0|31:-2|1;0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4309 chr21 30162196 GANGSTR_441349 TCACTCACTCACTCACTCAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30162196;END=30162215;PERIOD=4;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:0:38.50|38.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4310 chr21 30168453 GANGSTR_441350 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30168453;END=30168467;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4311 chr21 30174308 GANGSTR_441351 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30174308;END=30174319;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4312 chr21 30175172 GANGSTR_441352 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30175172;END=30175183;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4313 chr21 30176905 GANGSTR_441353 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30176905;END=30176919;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4314 chr21 30180621 GANGSTR_441354 GTAATGTAATGTAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30180621;END=30180635;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4315 chr21 30191183 GANGSTR_441355 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30191183;END=30191194;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4316 chr21 30195799 GANGSTR_441356 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30195799;END=30195810;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4317 chr21 30202681 GANGSTR_441357 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30202681;END=30202692;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:2:29.50|29.50:0|0:.:0:.:0:0|41:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4318 chr21 30209057 GANGSTR_441358 ACCAACCAACCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30209057;END=30209068;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4319 chr21 30216410 GANGSTR_441359 TATATATATATA . . . INFRAME_PGEOM=0.98;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30216410;END=30216421;PERIOD=2;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:2:0:36.00|36.00:0|0:.:0:.:0:-2|1;0|50;2|1:-2|1;0|48;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4320 chr21 30221123 GANGSTR_441360 CCACCACCACCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30221123;END=30221134;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4321 chr21 30226842 GANGSTR_441361 AGATAGAGATAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30226842;END=30226853;PERIOD=6;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|37:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4322 chr21 30228752 GANGSTR_441362 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=30228752;END=30228763;PERIOD=3;NSKIP=0;NFILT=0;DP=81;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:81:0:0:5:40.50|40.50:0|0:.:0:.:0:0|64:0|60:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4323 chr21 30229379 GANGSTR_441363 CAGCAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30229379;END=30229393;PERIOD=3;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4324 chr21 30230951 GANGSTR_441364 AAGGAAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30230951;END=30230958;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4325 chr21 30236153 GANGSTR_441366 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30236153;END=30236164;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:-1|1;0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4326 chr21 30236595 GANGSTR_441367 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30236595;END=30236606;PERIOD=2;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4327 chr21 30238229 GANGSTR_441368 GCCCTTTTCTTTTCTTTT GTCCTTTTCTTTTCTTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30238232;END=30238246;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:60:0:0:0:30.00|30.00:0|0:13.85:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4328 chr21 30239070 GANGSTR_441370 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30239070;END=30239081;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4329 chr21 30241825 GANGSTR_441371 CTTCTTCTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30241825;END=30241836;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|48:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4330 chr21 30249954 GANGSTR_441373 AGGAAGGAAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30249954;END=30249965;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4331 chr21 30253073 GANGSTR_441374 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30253073;END=30253084;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:3:30.00|30.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4332 chr21 30255403 GANGSTR_441375 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30255403;END=30255414;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4333 chr21 30257704 GANGSTR_441376 TGCGCATGCGCATGCGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30257704;END=30257721;PERIOD=6;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:1:1:30.50|30.50:0|0:.:0:.:0:0|36:-18|1;0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4334 chr21 30259234 GANGSTR_441378 AAATATATATATAT ATATATATATATAT . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30259236;END=30259247;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=44;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:44:0:1:0:22.00|22.00:0|0:11.95:0:.:0:-2|1;0|28:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4335 chr21 30262087 GANGSTR_441379 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.44;INFRAME_UP=0.05;INFRAME_DOWN=0.15;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=30262087;END=30262116;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6,10;DP=50;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:6|10:1:0.5:50:0:1:0:21.18|28.82:0|0:3.98:-0.64:25:-0.36:-10|1;0|11;6|7;10|9:4|1;6|7;10|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4336 chr21 30269097 GANGSTR_441380 TTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30269097;END=30269106;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4337 chr21 30280045 GANGSTR_441381 ATTTATTTATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30280045;END=30280068;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4338 chr21 30280469 GANGSTR_441382 TTGTTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30280469;END=30280486;PERIOD=3;NSKIP=0;NFILT=0;DP=84;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:84:0:0:0:42.00|42.00:0|0:.:0:.:0:0|47:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4339 chr21 30286865 GANGSTR_441383 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30286865;END=30286879;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:1:23.50|23.50:0|0:.:0:.:0:-2|1;0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4340 chr21 30291581 GANGSTR_441384 GAGGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30291581;END=30291590;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4341 chr21 30293927 GANGSTR_441385 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30293927;END=30293938;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4342 chr21 30297235 GANGSTR_441386 ATAATAATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30297235;END=30297252;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|38:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4343 chr21 30300487 GANGSTR_441388 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30300487;END=30300498;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|36:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4344 chr21 30313408 GANGSTR_441390 AAATAAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30313408;END=30313417;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4345 chr21 30317555 GANGSTR_441391 AAAGAAAGAAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30317555;END=30317574;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4346 chr21 30322109 GANGSTR_441392 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30322109;END=30322120;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|37:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4347 chr21 30324293 GANGSTR_441393 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30324293;END=30324312;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4348 chr21 30328410 GANGSTR_441394 ATAGTATAGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30328410;END=30328419;PERIOD=5;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4349 chr21 30333145 GANGSTR_441395 CCTCCTCCTCCTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.05;START=30333145;END=30333159;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:1:23.00|23.00:0|0:.:0:.:0:-1|1;0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4350 chr21 30343436 GANGSTR_441396 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30343436;END=30343445;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4351 chr21 30356661 GANGSTR_441398 TATATATATATATA . . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30356661;END=30356674;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:1:1:27.00|27.00:0|0:.:0:.:0:0|35;2|1:0|33;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4352 chr21 30359351 GANGSTR_441399 TTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30359351;END=30359360;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4353 chr21 30369778 GANGSTR_441400 CAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30369778;END=30369792;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4354 chr21 30371212 GANGSTR_441401 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30371212;END=30371223;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4355 chr21 30374905 GANGSTR_441402 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30374905;END=30374916;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4356 chr21 30375509 GANGSTR_441403 CTGGGGGGGTGGGGT CGGGGGGGGGGGGGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=30375514;END=30375523;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=34;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=7;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:34:0:0:2:28.74|5.26:0|0:4.23:-3.71:34:-2.65:0|22:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4357 chr21 30388584 GANGSTR_441405 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30388584;END=30388595;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=1;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:1:3:30.50|30.50:0|0:.:0:.:0:-14|1;0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4358 chr21 30394863 GANGSTR_441407 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30394863;END=30394874;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4359 chr21 30395577 GANGSTR_441408 AATAAATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30395577;END=30395592;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4360 chr21 30396561 GANGSTR_441409 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30396561;END=30396572;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4361 chr21 30399181 GANGSTR_441410 TTGTTGTTGTTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30399181;END=30399192;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:1:0:30.00|30.00:0|0:.:0:.:0:-3|1;0|47:-3|1;0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4362 chr21 30409471 GANGSTR_441411 TGGGTGGGTGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30409471;END=30409482;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:1:32.00|32.00:0|0:.:0:.:0:0|50:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4363 chr21 30410851 GANGSTR_441412 TGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30410851;END=30410860;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4364 chr21 30414022 GANGSTR_441413 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30414022;END=30414033;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|52:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4365 chr21 30417070 GANGSTR_441414 TTCTTTCTTTCTTTCTTTCTTTCT . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30417070;END=30417093;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:1:1:35.50|35.50:0|0:.:0:.:0:-4|1;-1|1;0|33:-4|1;0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4366 chr21 30418624 GANGSTR_441415 ATTTTTATTTTTATTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30418624;END=30418641;PERIOD=6;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4367 chr21 30420370 GANGSTR_441416 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . . INFRAME_PGEOM=0.99;INFRAME_UP=0.1;INFRAME_DOWN=0.13;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=30420370;END=30420419;PERIOD=2;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=5;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:5:2:18.50|18.50:0|0:.:0:.:0:-4|1;-2|3;0|9;2|1:-2|3;0|7;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4368 chr21 30425062 GANGSTR_441417 GACTAAGACTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30425062;END=30425073;PERIOD=6;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|41:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4369 chr21 30430338 GANGSTR_441418 ACAACAACAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30430338;END=30430349;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4370 chr21 30436097 GANGSTR_441419 TTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30436097;END=30436104;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4371 chr21 30436407 GANGSTR_441420 AGGTAGGTAGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30436407;END=30436418;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4372 chr21 30443719 GANGSTR_441421 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30443719;END=30443730;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4373 chr21 30444311 GANGSTR_441422 TGTTGTTGTTGTTGTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.98;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=30444311;END=30444328;PERIOD=3;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:3:35.00|35.00:0|0:.:0:.:0:-1|1;0|40;1|1:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4374 chr21 30447287 GANGSTR_441423 CTCCTCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30447287;END=30447295;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4375 chr21 30462693 GANGSTR_441424 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30462693;END=30462707;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:2:24.71|28.29:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4376 chr21 30465794 GANGSTR_441425 GTTTGTTTGTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30465794;END=30465813;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4377 chr21 30468704 GANGSTR_441426 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30468704;END=30468715;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4378 chr21 30470353 GANGSTR_441427 AATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30470353;END=30470362;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:27.00|36.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4379 chr21 30471407 GANGSTR_441428 TTTCTTTTCTTTTCTTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30471407;END=30471426;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:27.00|33.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4380 chr21 30473728 GANGSTR_441429 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30473728;END=30473742;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4381 chr21 30476226 GANGSTR_441431 AAACTAAACTAAACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30476226;END=30476240;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4382 chr21 30476444 GANGSTR_441432 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=30476444;END=30476455;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:1:26.50|26.50:0|0:.:0:.:0:-1|1;0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4383 chr21 30479643 GANGSTR_441433 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30479643;END=30479654;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4384 chr21 30483594 GANGSTR_441434 AACAACAACAACAACAACAAC AACAACAACAACAACAAC . . INFRAME_PGEOM=0.98;INFRAME_UP=0.04;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30483594;END=30483614;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-3:1:0.5:65:0:0:0:32.66|32.34:0|0:16.47:0:46:0:-3|23;0|20:-3|23;0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4385 chr21 30484626 GANGSTR_441435 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30484626;END=30484640;PERIOD=5;NSKIP=0;NFILT=0;DP=85;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:85:0:0:0:42.50|42.50:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4386 chr21 30484852 GANGSTR_441436 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30484852;END=30484863;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4387 chr21 30486375 GANGSTR_441437 AATTAAATTAAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30486375;END=30486389;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4388 chr21 30487064 GANGSTR_441438 AATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30487064;END=30487078;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4389 chr21 30489447 GANGSTR_441439 TAATTTAATTTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30489447;END=30489461;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4390 chr21 30491617 GANGSTR_441440 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30491617;END=30491632;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4391 chr21 30494970 GANGSTR_441442 GCTGCTGCTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30494970;END=30494981;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4392 chr21 30503024 GANGSTR_441444 GAAGGGAAGGGAAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30503024;END=30503038;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4393 chr21 30504212 GANGSTR_441445 TAGATAGATAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30504212;END=30504223;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:1:34.50|34.50:0|0:.:0:.:0:-1|1;0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4394 chr21 30504635 GANGSTR_441446 TTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30504635;END=30504646;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:2:27.50|27.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4395 chr21 30504830 GANGSTR_441447 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30504830;END=30504845;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4396 chr21 30506496 GANGSTR_441448 CTCTCTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30506496;END=30506511;PERIOD=2;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|59:0|57:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4397 chr21 30510494 GANGSTR_441449 ATATATATATAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30510494;END=30510505;PERIOD=2;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:1:0:34.00|34.00:0|0:.:0:.:0:0|42;2|1:0|40;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4398 chr21 30514290 GANGSTR_441450 AATTTAAATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30514290;END=30514301;PERIOD=6;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:1:37.50|37.50:0|0:.:0:.:0:0|52:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4399 chr21 30516225 GANGSTR_441451 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30516225;END=30516236;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4400 chr21 30519681 GANGSTR_441452 TGTATGTATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30519681;END=30519692;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:36.00|23.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4401 chr21 30520059 GANGSTR_441453 TGTATGTATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30520059;END=30520070;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|55:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4402 chr21 30528956 GANGSTR_441454 ACATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30528956;END=30528963;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4403 chr21 30534021 GANGSTR_441455 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30534021;END=30534032;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|51:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4404 chr21 30534207 GANGSTR_441456 CCTTCCTTCCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30534207;END=30534218;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4405 chr21 30534510 GANGSTR_441457 GTGTGTGTGTGT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30534510;END=30534521;PERIOD=2;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:1:0:34.50|34.50:0|0:.:0:.:0:-2|1;0|53:-2|1;0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4406 chr21 30537890 GANGSTR_441458 ATTTTATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30537890;END=30537909;PERIOD=5;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4407 chr21 30541873 GANGSTR_441459 TATTATATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30541873;END=30541882;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4408 chr21 30544447 GANGSTR_441460 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=30544447;END=30544458;PERIOD=3;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:1:1:34.50|34.50:0|0:.:0:.:0:-1|1;0|47:-6|1;0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4409 chr21 30550707 GANGSTR_441461 AGGAAGAGGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30550707;END=30550718;PERIOD=6;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|47:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4410 chr21 30551865 GANGSTR_441462 CAAACAAACAAACAAA CAAACAAACAAACAAACAAA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.08;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30551865;END=30551880;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:58:0:0:0:26.96|31.04:0|0:5.79:-0.3:35:-0.5:-8|1;0|13;4|16:0|11;4|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4411 chr21 30553232 GANGSTR_441463 TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC,TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC . . INFRAME_PGEOM=0.84;INFRAME_UP=0.07;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=30553232;END=30553279;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4,4;DP=72;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|4:0.7:0.35:72:0:1:0:28.79|43.21:0|0:0.38:-2.59:23:0:-11|1;-6|1;-4|2;0|1;4|9:-4|2;4|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4412 chr21 30554562 GANGSTR_441464 AAAGAGAAAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30554562;END=30554573;PERIOD=6;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4413 chr21 30554982 GANGSTR_441465 CAAAAAACAAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30554982;END=30554995;PERIOD=7;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=6;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|35:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4414 chr21 30555880 GANGSTR_441466 TTTGTGTGTGTGTG TGTGTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.02;START=30555882;END=30555893;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:59:0:0:2:29.50|29.50:0|0:15.6:0:.:0:0|47;1|1:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4415 chr21 30556950 GANGSTR_441467 TAGAATTAGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30556950;END=30556961;PERIOD=6;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:25.01|36.99:0|0:.:0:.:0:0|44:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4416 chr21 30558549 GANGSTR_441468 TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC,TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC . . INFRAME_PGEOM=0.96;INFRAME_UP=0.08;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=30558549;END=30558592;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4,8;DP=77;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:4|8:1:0.5:77:0:1:0:37.64|39.36:0|0:4.93:-0.14:31:-0.81:-14|1;-10|1;-5|1;-2|3;0|1;4|11;8|13:0|1;4|11;8|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4417 chr21 30559019 GANGSTR_441469 TGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.97;INFRAME_UP=0.06;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30559019;END=30559042;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=63;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:63:0:1:0:34.72|28.28:0|0:6.81:-0.47:39:-0.29:-4|1;-2|14;0|21:-4|1;-2|10;0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4418 chr21 30559813 GANGSTR_441470 CCTCCCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30559813;END=30559822;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.50|32.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4419 chr21 30562473 GANGSTR_441471 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30562473;END=30562488;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4420 chr21 30562850 GANGSTR_441472 ACAAGACAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30562850;END=30562859;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4421 chr21 30566045 GANGSTR_441473 TTTGTTTGTTTG TTTGTTTG . . INFRAME_PGEOM=0.94;INFRAME_UP=0.09;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30566045;END=30566056;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:44:0:0:0:22.00|22.00:0|0:9.46:0:.:0:-4|28;0|2:-4|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4422 chr21 30566223 GANGSTR_441474 TAATTTTAATTTTT TAATTTTAATTTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30566223;END=30566234;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=5;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:59:0:0:0:33.51|25.49:0|0:74.54:-0.47:54:-1:0|37:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4423 chr21 30569650 GANGSTR_441475 AGCAGATGAGCAGATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30569650;END=30569665;PERIOD=8;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|37:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4424 chr21 30573408 GANGSTR_441476 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30573408;END=30573419;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4425 chr21 30581926 GANGSTR_441478 TTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30581926;END=30581937;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4426 chr21 30587697 GANGSTR_441479 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30587697;END=30587708;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|43:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4427 chr21 30593214 GANGSTR_441481 TTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30593214;END=30593228;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4428 chr21 30595789 GANGSTR_441482 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30595789;END=30595803;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4429 chr21 30602458 GANGSTR_441483 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30602458;END=30602469;PERIOD=2;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:1:1:23.00|23.00:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4430 chr21 30605923 GANGSTR_441484 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30605923;END=30605934;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4431 chr21 30607402 GANGSTR_441485 GAAAAGAAAAGAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30607402;END=30607416;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4432 chr21 30612627 GANGSTR_441486 TGCCTGCCTGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30612627;END=30612638;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4433 chr21 30618761 GANGSTR_441487 ATTTTTATTTTTATTTTTATTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30618761;END=30618784;PERIOD=6;NSKIP=0;NFILT=0;DP=86;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:86:0:0:0:43.00|43.00:0|0:.:0:.:0:0|27:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4434 chr21 30619629 GANGSTR_441488 GTGTGTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30619629;END=30619644;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4435 chr21 30620776 GANGSTR_441489 TTATTTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30620776;END=30620795;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.50|32.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4436 chr21 30621622 GANGSTR_441490 CTCTCCCTCTCCCTCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30621622;END=30621639;PERIOD=6;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|36:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4437 chr21 30628358 GANGSTR_441491 TCCTCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30628358;END=30628366;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4438 chr21 30632598 GANGSTR_441492 GAGAGAGAGAGAGAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30632598;END=30632621;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:0|26:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4439 chr21 30632994 GANGSTR_441493 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30632994;END=30633005;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|54:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4440 chr21 30633245 GANGSTR_441494 TATTATTATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30633245;END=30633262;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4441 chr21 30646706 GANGSTR_441495 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30646706;END=30646717;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4442 chr21 30649487 GANGSTR_441496 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=30649487;END=30649498;PERIOD=4;NSKIP=0;NFILT=0;DP=25;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:25:0:0:0:12.50|12.50:0|0:.:0:.:0:0|18:0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4443 chr21 30650293 GANGSTR_441497 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30650293;END=30650304;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4444 chr21 30656403 GANGSTR_441498 TTCAATTCAATTCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30656403;END=30656417;PERIOD=5;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4445 chr21 30671111 GANGSTR_441499 GCGGGCGGGCGGGGT GCGGGCGGGCGGGGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30671111;END=30671122;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:0.89:0.45:40:0:0:1:29.35|10.65:0|0:0.93:-2.68:32:-2.17:0|28:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4446 chr21 30671401 GANGSTR_441500 CTGGGCTGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30671401;END=30671410;PERIOD=5;NSKIP=0;NFILT=0;DP=35;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:0:0:17.50|17.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4447 chr21 30672419 GANGSTR_441501 GGGCTGGGCTGGGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30672419;END=30672433;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4448 chr21 30676963 GANGSTR_441502 TCCCTCCCTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30676963;END=30676974;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4449 chr21 30678491 GANGSTR_441503 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.94;INFRAME_UP=0.04;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=30678491;END=30678532;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-8,-2;DP=57;DSNP=0;DSTUTTER=4;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-8|-2:1:0.5:57:0:4:2:27.14|29.86:0|0:12.97:-0.14:31:-0.32:-10|2;-8|12;-4|2;-2|12:-10|2;-8|10;-4|1;-2|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4450 chr21 30679149 GANGSTR_441504 AATCAAATCAAATCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30679149;END=30679163;PERIOD=5;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:0:39.50|39.50:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4451 chr21 30679729 GANGSTR_441505 TGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30679729;END=30679748;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:1:0:30.00|30.00:0|0:.:0:.:0:-4|1;0|49:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4452 chr21 30683742 GANGSTR_441506 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30683742;END=30683753;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4453 chr21 30684940 GANGSTR_441507 AACAAAACAAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30684940;END=30684954;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4454 chr21 30686211 GANGSTR_441508 GGGGTGGTGGTGGT GTGGTGGTGGTGGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30686213;END=30686224;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:54:0:0:0:27.00|27.00:0|0:5.18:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4455 chr21 30687946 GANGSTR_441509 CACACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30687946;END=30687959;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4456 chr21 30693177 GANGSTR_441510 TCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30693177;END=30693190;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|49:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4457 chr21 30695331 GANGSTR_441511 CATTCATTCATTCTTTC CATTCATTCATTCTTTCTAATT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30695331;END=30695342;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=5;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:5|5:1:1:72:0:0:0:36.00|36.00:0|0:16.87:0:.:0:0|49:5|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4458 chr21 30695529 GANGSTR_441512 TATGTATGTATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30695529;END=30695540;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4459 chr21 30696878 GANGSTR_441513 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=30696878;END=30696921;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-18;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-18|-18:1:1:62:0:0:0:31.00|31.00:0|0:11.42:0:.:0:-18|38:-18|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4460 chr21 30704220 GANGSTR_441514 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30704220;END=30704235;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4461 chr21 30704816 GANGSTR_441515 GAATGAATGAATGAATGAATGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30704816;END=30704839;PERIOD=4;NSKIP=0;NFILT=0;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:78:0:0:0:39.00|39.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4462 chr21 30709311 GANGSTR_441516 TCCCTCCCTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30709311;END=30709322;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4463 chr21 30726169 GANGSTR_441518 GAAGAAGAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30726169;END=30726180;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4464 chr21 30731398 GANGSTR_441519 ATAATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30731398;END=30731412;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4465 chr21 30738304 GANGSTR_441520 TGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30738304;END=30738318;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4466 chr21 30740103 GANGSTR_441521 TTTTGTTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30740103;END=30740127;PERIOD=5;NSKIP=0;NFILT=0;DP=83;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:83:0:0:0:41.50|41.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4467 chr21 30748526 GANGSTR_441522 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30748526;END=30748537;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4468 chr21 30753064 GANGSTR_441523 TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=30753064;END=30753107;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|10:0|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4469 chr21 30762253 GANGSTR_441524 ATTTGTATTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30762253;END=30762264;PERIOD=6;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|50:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4470 chr21 30762679 GANGSTR_441525 TCTTTCTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30762679;END=30762690;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:1:34.50|34.50:0|0:.:0:.:0:0|57:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4471 chr21 30763672 GANGSTR_441526 TTTAATTTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30763672;END=30763681;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4472 chr21 30770360 GANGSTR_441527 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30770360;END=30770371;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4473 chr21 30781911 GANGSTR_441528 AATGAATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30781911;END=30781926;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4474 chr21 30782418 GANGSTR_441529 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30782418;END=30782429;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4475 chr21 30783492 GANGSTR_441531 TTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30783492;END=30783506;PERIOD=3;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4476 chr21 30788236 GANGSTR_441532 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30788236;END=30788247;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|47:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4477 chr21 30795347 GANGSTR_441533 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAG . . INFRAME_PGEOM=0.93;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30795347;END=30795376;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=67;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:67:0:3:0:38.84|28.16:0|0:16.58:-1.05:35:-0.32:-6|1;-4|10;-2|2;0|15:-6|1;-4|9;-2|2;0|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4478 chr21 30798979 GANGSTR_441534 CTTCTCTTCTCTTCTCTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30798979;END=30798998;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4479 chr21 30799328 GANGSTR_441535 CCTCCTCCTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30799328;END=30799339;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4480 chr21 30804865 GANGSTR_441536 CAAAACAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30804865;END=30804884;PERIOD=5;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4481 chr21 30806317 GANGSTR_441537 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30806317;END=30806328;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4482 chr21 30807248 GANGSTR_441538 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30807248;END=30807259;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4483 chr21 30812244 GANGSTR_441539 ATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30812244;END=30812259;PERIOD=4;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:2:38.50|38.50:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4484 chr21 30818717 GANGSTR_441540 AATTAATTAATTAATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30818717;END=30818740;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|25:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4485 chr21 30820498 GANGSTR_441541 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30820498;END=30820509;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|27:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4486 chr21 30829465 GANGSTR_441542 GATGATGATGATGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30829465;END=30829479;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4487 chr21 30832527 GANGSTR_441543 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30832527;END=30832538;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4488 chr21 30838771 GANGSTR_441545 GTTATGTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30838771;END=30838780;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4489 chr21 30840498 GANGSTR_441546 ATATATATATAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30840498;END=30840509;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:1:0:28.00|28.00:0|0:.:0:.:0:0|39;2|1:0|37;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4490 chr21 30841870 GANGSTR_441548 ACAACAACAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30841870;END=30841881;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4491 chr21 30842886 GANGSTR_441549 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=30842886;END=30842897;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:2:27.50|27.50:0|0:.:0:.:0:-1|1;0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4492 chr21 30865321 GANGSTR_441550 TTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30865321;END=30865340;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4493 chr21 30868716 GANGSTR_441551 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30868716;END=30868731;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4494 chr21 30870006 GANGSTR_441552 TGTATATATATATATATATATATATA TATATATATATATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30870008;END=30870031;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-12;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-12|-12:1:1:61:0:0:0:30.50|30.50:0|0:16.55:0:.:0:-12|45;-10|1:-12|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4495 chr21 30878046 GANGSTR_441553 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30878046;END=30878061;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4496 chr21 30882743 GANGSTR_441554 GAAAAGGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30882743;END=30882754;PERIOD=6;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:1:33.50|33.50:0|0:.:0:.:0:-19|1;0|38:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4497 chr21 30885999 GANGSTR_441555 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30885999;END=30886010;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4498 chr21 30887528 GANGSTR_441556 AAGATAAAGATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30887528;END=30887539;PERIOD=6;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|42:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4499 chr21 30890065 GANGSTR_441557 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30890065;END=30890076;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4500 chr21 30893675 GANGSTR_441558 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30893675;END=30893686;PERIOD=4;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:0:19.50|19.50:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4501 chr21 30902566 GANGSTR_441559 TTCTTCTTCTTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30902566;END=30902580;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|42:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4502 chr21 30903238 GANGSTR_441560 GGGAGGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30903238;END=30903247;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4503 chr21 30903901 GANGSTR_441561 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30903901;END=30903912;PERIOD=2;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4504 chr21 30905673 GANGSTR_441562 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30905673;END=30905688;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4505 chr21 30914354 GANGSTR_441563 GTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30914354;END=30914375;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=68;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:68:0:1:0:34.00|34.00:0|0:13.84:0:.:0:-6|1;-4|44:-6|1;-4|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4506 chr21 30921346 GANGSTR_441565 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=30921346;END=30921357;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|22:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4507 chr21 30924280 GANGSTR_441566 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30924280;END=30924291;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4508 chr21 30931906 GANGSTR_441567 AATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30931906;END=30931914;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|48:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4509 chr21 30936461 GANGSTR_441568 ATTTATTTATTTATTTATTTT ATTTATTTATTTATTTATTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30936461;END=30936480;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:57:0:0:0:22.98|34.02:0|0:47.78:-0.87:45:-0.43:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4510 chr21 30943511 GANGSTR_441569 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30943511;END=30943522;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4511 chr21 30944735 GANGSTR_441570 CCTCCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30944735;END=30944742;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:1:23.50|23.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4512 chr21 30948193 GANGSTR_441571 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30948193;END=30948204;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4513 chr21 30952808 GANGSTR_441572 TCTCTCTCTCTC TCTCTCTCTC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30952808;END=30952819;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:51:0:0:0:25.50|25.50:0|0:12.8:0:.:0:-2|42:-2|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4514 chr21 30971122 GANGSTR_441573 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30971122;END=30971133;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4515 chr21 30972111 GANGSTR_441574 ACAAACAAACAAACAAACAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30972111;END=30972134;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:31.83|25.17:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4516 chr21 30978596 GANGSTR_441575 TTTTATTTTATTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=30978596;END=30978620;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4517 chr21 30979114 GANGSTR_441576 TCTTGTCTTGTCTTGTCTTGTCTTG TCTTGTCTTGTCTTGTCTTG . . INFRAME_PGEOM=0.96;INFRAME_UP=0.08;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30979114;END=30979138;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-5;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-5:1:0.5:43:0:0:0:23.10|19.90:0|0:6.51:-0.22:32:-0.31:-12|1;-5|13;0|16:-5|13;0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4518 chr21 30981992 GANGSTR_441577 CATCTCATCTCATCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=30981992;END=30982006;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4519 chr21 30985915 GANGSTR_441578 TATCTATCTATCTATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30985915;END=30985930;PERIOD=4;NSKIP=0;NFILT=0;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:78:0:0:0:43.47|34.53:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4520 chr21 30987630 GANGSTR_441579 CTTTCTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30987630;END=30987645;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4521 chr21 30993714 GANGSTR_441580 GTGTGTGTGTGTGTGTGT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=30993714;END=30993731;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:1:1:31.00|31.00:0|0:.:0:.:0:-2|2;0|46:-2|1;0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4522 chr21 31001295 GANGSTR_441581 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31001295;END=31001306;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4523 chr21 31001515 GANGSTR_441582 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.98;INFRAME_UP=0.07;INFRAME_DOWN=0.2;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=31001515;END=31001554;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=60;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:60:0:3:0:29.10|30.90:0|0:3.11:-0.16:25:-1.81:-13|1;-2|2;0|10;2|9:-2|2;0|9;2|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4524 chr21 31001806 GANGSTR_441583 TTTCTTTCTTTC TTTCTTTCTTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.84;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.13;START=31001806;END=31001817;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=47;DSNP=0;DSTUTTER=2;DFLANKINDEL=5;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:47:0:2:5:24.35|22.65:0|0:57.81:-0.06:42:0:-2|1;-1|3;0|29:-4|1;0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4525 chr21 31006180 GANGSTR_441584 AGAAATAGAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31006180;END=31006191;PERIOD=6;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|36:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4526 chr21 31006421 GANGSTR_441585 ATCAGCCAACCAACCAACCAA ACCAGCCGACCAACCAACCAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31006426;END=31006441;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:52:0:0:0:28.99|23.01:0|0:141.18:-0.35:44:-1.12:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4527 chr21 31013248 GANGSTR_441586 TTGTTGTTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31013248;END=31013268;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4528 chr21 31015691 GANGSTR_441587 TATCTATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31015691;END=31015698;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4529 chr21 31037043 GANGSTR_441588 AGGAAGGAAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31037043;END=31037054;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4530 chr21 31038429 GANGSTR_441589 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31038429;END=31038440;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4531 chr21 31039704 GANGSTR_441590 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31039704;END=31039715;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|52:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4532 chr21 31040854 GANGSTR_441591 AGGTCAGGTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31040854;END=31040863;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4533 chr21 31042101 GANGSTR_441592 TTCCTTTCCTTTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31042101;END=31042115;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4534 chr21 31043432 GANGSTR_441593 TTTATTTTATTTTATTTTAT . . . INFRAME_PGEOM=0.73;INFRAME_UP=0.04;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31043432;END=31043451;PERIOD=5;NSKIP=0;NFILT=0;DP=89;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:89:0:0:1:44.50|44.50:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4535 chr21 31044983 GANGSTR_441594 AGAGAGAGAGAGAGAGAG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31044983;END=31045000;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:2:0:31.00|31.00:0|0:.:0:.:0:-48|1;-2|1;0|40:-2|1;0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4536 chr21 31046608 GANGSTR_441595 TGTGTGTGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31046608;END=31046633;PERIOD=2;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:2:1:33.00|33.00:0|0:.:0:.:0:-2|1;0|37:-2|1;0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4537 chr21 31046978 GANGSTR_441596 CTCTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31046978;END=31046991;PERIOD=2;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4538 chr21 31057356 GANGSTR_441597 CTGCCTGCCTGCCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31057356;END=31057371;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4539 chr21 31058970 GANGSTR_441598 TGCTTGCTTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31058970;END=31058981;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4540 chr21 31063636 GANGSTR_441599 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31063636;END=31063647;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4541 chr21 31067756 GANGSTR_441600 TATCTATCTATCTATCTATCTATCTATCTATCTATCTATC TATCTATCTATCTATCTATCTATCTATCTATCTATA,TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATA . . INFRAME_PGEOM=0.94;INFRAME_UP=0.13;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=31067756;END=31067795;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4,4;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|4:1:0.5:47:0:0:0:24.87|22.13:0|0:9.21:0:19:0:-4|9;-2|1;0|3;4|3:-4|10;4|4:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4542 chr21 31070205 GANGSTR_441601 TTTCCTTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31070205;END=31070214;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4543 chr21 31071902 GANGSTR_441602 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31071902;END=31071913;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4544 chr21 31073367 GANGSTR_441603 GTTGTTGTTGTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31073367;END=31073381;PERIOD=3;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|55:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4545 chr21 31082372 GANGSTR_441604 TAATATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31082372;END=31082381;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4546 chr21 31087116 GANGSTR_441605 AATCAATCAATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31087116;END=31087127;PERIOD=4;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:1:38.00|38.00:0|0:.:0:.:0:0|58:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4547 chr21 31092548 GANGSTR_441606 TTATTTTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31092548;END=31092562;PERIOD=5;NSKIP=0;NFILT=0;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:78:0:0:0:39.00|39.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4548 chr21 31103027 GANGSTR_441607 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31103027;END=31103038;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4549 chr21 31108524 GANGSTR_441609 ATTATGATTATGATTATGATTATG ATTATGATTATGATTATG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31108524;END=31108547;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-6|-6:1:1:66:0:0:0:33.00|33.00:0|0:12.71:0:.:0:-6|38;-5|1:-6|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4550 chr21 31111032 GANGSTR_441610 ATGCATCTATCTATCT ACGCATCTATCTATCT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31111036;END=31111047;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:68:0:0:0:34.00|34.00:0|0:18.36:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4551 chr21 31117947 GANGSTR_441612 ATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31117947;END=31117961;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|32:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4552 chr21 31122293 GANGSTR_441613 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31122293;END=31122304;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4553 chr21 31125402 GANGSTR_441614 TGCATGCATGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31125402;END=31125413;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|45:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4554 chr21 31126558 GANGSTR_441615 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31126558;END=31126569;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:-18|1;0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4555 chr21 31140184 GANGSTR_441616 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.99;INFRAME_UP=0.1;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31140184;END=31140221;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-12,-10;DP=70;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-12|-10:1:0.5:70:0:2:0:38.79|31.21:0|0:7.51:-0.4:51:-1.02:-12|27;-10|17;-8|2:-12|24;-10|16;-8|2:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4556 chr21 31141318 GANGSTR_441617 CAATCAATCAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31141318;END=31141329;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:1:32.00|32.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4557 chr21 31151814 GANGSTR_441618 GTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.05;INFRAME_DOWN=0.2;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31151814;END=31151837;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=55;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:55:0:3:0:27.03|27.97:0|0:6.79:-0.47:39:0:-4|3;-2|19;0|14:-4|3;-2|18;0|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4558 chr21 31161250 GANGSTR_441619 TCACTCACTCACTCAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31161250;END=31161265;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4559 chr21 31163803 GANGSTR_441621 AAGAAGAAGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31163803;END=31163814;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4560 chr21 31164988 GANGSTR_441622 TTTGCTTTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31164988;END=31164997;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4561 chr21 31166832 GANGSTR_441623 CATCATCATCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31166832;END=31166843;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4562 chr21 31189330 GANGSTR_441625 TGCATGCATGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31189330;END=31189341;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.00|30.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4563 chr21 31200100 GANGSTR_441626 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31200100;END=31200111;PERIOD=4;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:2:38.50|38.50:0|0:.:0:.:0:0|53:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4564 chr21 31200826 GANGSTR_441627 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31200826;END=31200837;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4565 chr21 31208986 GANGSTR_441628 ATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31208986;END=31208999;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4566 chr21 31211358 GANGSTR_441629 TTTCTTTTCTTTTCTTTTCT . . . INFRAME_PGEOM=0.97;INFRAME_UP=0.2;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31211358;END=31211377;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=12;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:12:0:30.00|30.00:0|0:.:0:.:0:-11|1;-7|3;0|20;5|5:0|19;5|5:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4567 chr21 31215653 GANGSTR_441630 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31215653;END=31215664;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|55:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4568 chr21 31219908 GANGSTR_441631 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31219908;END=31219923;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4569 chr21 31220366 GANGSTR_441632 TTATTATTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31220366;END=31220386;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4570 chr21 31221411 GANGSTR_441634 AATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31221411;END=31221418;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|49:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4571 chr21 31225627 GANGSTR_441635 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31225627;END=31225638;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4572 chr21 31226518 GANGSTR_441636 AGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31226518;END=31226529;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|40:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4573 chr21 31228091 GANGSTR_441637 GATGGTGATGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31228091;END=31228102;PERIOD=6;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|33:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4574 chr21 31230220 GANGSTR_441638 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31230220;END=31230231;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4575 chr21 31231686 GANGSTR_441639 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=31231686;END=31231697;PERIOD=2;NSKIP=0;NFILT=0;DP=27;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:27:0:0:0:13.50|13.50:0|0:.:0:.:0:0|17:0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4576 chr21 31237977 GANGSTR_441640 CATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31237977;END=31237988;PERIOD=4;NSKIP=0;NFILT=0;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:78:0:0:0:39.00|39.00:0|0:.:0:.:0:0|58:0|57:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4577 chr21 31240689 GANGSTR_441641 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31240689;END=31240700;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|57:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4578 chr21 31254404 GANGSTR_441642 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31254404;END=31254419;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|50:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4579 chr21 31265152 GANGSTR_441644 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31265152;END=31265166;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4580 chr21 31268854 GANGSTR_441645 TGAATGAATGAA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31268854;END=31268865;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:1:0:28.00|28.00:0|0:.:0:.:0:-4|1;0|40:-4|1;0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4581 chr21 31278259 GANGSTR_441646 TTTGTTTGTTTGTTTGTTTG TTTGTTTGTTTGTTTGTTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.06;START=31278259;END=31278278;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:59:0:0:1:29.50|29.50:0|0:13.39:0:.:0:-1|1;0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4582 chr21 31279047 GANGSTR_441647 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31279047;END=31279058;PERIOD=4;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|61:0|61:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4583 chr21 31284037 GANGSTR_441648 CTCCCTCCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31284037;END=31284048;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4584 chr21 31285094 GANGSTR_441649 GATGATGATGATGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31285094;END=31285108;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|43:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4585 chr21 31285991 GANGSTR_441650 ATATATATATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=31285991;END=31286012;PERIOD=2;NSKIP=0;NFILT=0;DP=25;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:25:0:0:0:12.50|12.50:0|0:.:0:.:0:0|11:0|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4586 chr21 31287243 GANGSTR_441651 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31287243;END=31287254;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4587 chr21 31291004 GANGSTR_441652 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31291004;END=31291015;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4588 chr21 31293819 GANGSTR_441653 CAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31293819;END=31293826;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|55:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4589 chr21 31293946 GANGSTR_441654 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31293946;END=31293957;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4590 chr21 31305786 GANGSTR_441655 TGTTTGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31305786;END=31305801;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4591 chr21 31308271 GANGSTR_441656 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31308271;END=31308282;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4592 chr21 31308414 GANGSTR_441657 CTCACTCACTCATT CTCACTCACTCATC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31308414;END=31308425;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:55:0:0:0:22.00|33.00:0|0:56.39:-0.9:43:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4593 chr21 31309683 GANGSTR_441658 CCATGCCATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31309683;END=31309692;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4594 chr21 31312046 GANGSTR_441659 CTCCTCCTCCTCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31312046;END=31312060;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4595 chr21 31313250 GANGSTR_441660 ATTAATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31313250;END=31313261;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4596 chr21 31322364 GANGSTR_441661 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=31322364;END=31322375;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4597 chr21 31322508 GANGSTR_441662 TTTCTTTCTTTC . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=31322508;END=31322519;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:1:0:20.00|20.00:0|0:.:0:.:0:-4|1;0|19:-4|1;0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4598 chr21 31324618 GANGSTR_441663 ACATACATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31324618;END=31324629;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4599 chr21 31326573 GANGSTR_441664 TTTCCTTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31326573;END=31326582;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4600 chr21 31327462 GANGSTR_441665 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31327462;END=31327473;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|57:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4601 chr21 31332976 GANGSTR_441666 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31332976;END=31332991;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4602 chr21 31335145 GANGSTR_441667 CTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31335145;END=31335156;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:4:25.50|25.50:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4603 chr21 31341679 GANGSTR_441668 ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAA ATAAATAAATAAATAAATAAATAAATAAATAAATAA . . INFRAME_PGEOM=0.98;INFRAME_UP=0.08;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=31341679;END=31341718;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:60:0:0:2:30.03|29.97:0|0:4.79:0:27:0:-34|1;-4|11;0|6:-4|11;0|5:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4604 chr21 31342944 GANGSTR_441669 TTTATATTTATATTTATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=31342944;END=31342961;PERIOD=6;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|23:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4605 chr21 31343757 GANGSTR_441670 TTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31343757;END=31343766;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4606 chr21 31344420 GANGSTR_441671 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31344420;END=31344431;PERIOD=3;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4607 chr21 31344987 GANGSTR_441672 AACCAACCAACCAACCAACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31344987;END=31345006;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4608 chr21 31350782 GANGSTR_441673 ATATATATATATATATAT ATATATATATATATATATATATAT . . INFRAME_PGEOM=0.98;INFRAME_UP=0.12;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=31350782;END=31350799;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6;DP=29;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:6|6:1:1:29:0:2:0:14.50|14.50:0|0:3.94:0:.:0:-24|1;4|1;6|10;8|1:4|1;6|10;8|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4609 chr21 31351757 GANGSTR_441674 GAAGAAGAAGAAA GAAGAAGAAGAAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31351757;END=31351768;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:61:0:0:0:30.50|30.50:0|0:16.55:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4610 chr21 31355769 GANGSTR_441675 GCAGCAGCAGCAGCAGCAGCA . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31355769;END=31355789;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:1:0:30.00|30.00:0|0:.:0:.:0:-3|1;0|32:-3|1;0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4611 chr21 31356504 GANGSTR_441676 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31356504;END=31356515;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4612 chr21 31359090 GANGSTR_441677 AAGAAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31359090;END=31359099;PERIOD=5;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|58:0|58:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4613 chr21 31362489 GANGSTR_441678 ACATACATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31362489;END=31362500;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4614 chr21 31368012 GANGSTR_441679 GACAGACAGACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31368012;END=31368023;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4615 chr21 31369243 GANGSTR_441680 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=31369243;END=31369254;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|24:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4616 chr21 31372623 GANGSTR_441681 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31372623;END=31372634;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4617 chr21 31375312 GANGSTR_441682 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31375312;END=31375327;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4618 chr21 31377799 GANGSTR_441683 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31377799;END=31377810;PERIOD=3;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|52:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4619 chr21 31383605 GANGSTR_441684 ATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31383605;END=31383610;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:-8|1;0|50:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4620 chr21 31385209 GANGSTR_441685 GAAAGGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31385209;END=31385218;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4621 chr21 31391739 GANGSTR_441686 AGGGAGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31391739;END=31391750;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4622 chr21 31396528 GANGSTR_441687 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31396528;END=31396539;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4623 chr21 31396863 GANGSTR_441688 AATAATAATAATAATAAT AAAAATAATAATAATAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.94;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.07;START=31396863;END=31396880;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:61:0:0:2:30.50|30.50:0|0:14.95:0:.:0:-1|2;0|35:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4624 chr21 31407801 GANGSTR_441690 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31407801;END=31407812;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4625 chr21 31417489 GANGSTR_441691 ATCATCATCATCATCATCATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31417489;END=31417509;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4626 chr21 31419140 GANGSTR_441692 TATGTATGTGTATGTGTATGTGTATGTGTATGTGTATG TGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATGTGTATG . . INFRAME_PGEOM=0.94;INFRAME_UP=0.33;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=31419142;END=31419177;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=6;DP=70;DSNP=0;DSTUTTER=8;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:6|6:1:1:70:0:8:0:35.00|35.00:0|0:12.95:0:.:0:-4|3;0|3;6|9;12|6:6|10;12|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4627 chr21 31421446 GANGSTR_441693 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31421446;END=31421457;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4628 chr21 31423579 GANGSTR_441694 GTGGTGGTGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31423579;END=31423590;PERIOD=3;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:1:34.50|34.50:0|0:.:0:.:0:0|56:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4629 chr21 31429889 GANGSTR_441695 TTGTTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31429889;END=31429906;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4630 chr21 31431193 GANGSTR_441696 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31431193;END=31431208;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|45:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4631 chr21 31431605 GANGSTR_441697 ATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31431605;END=31431618;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|48:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4632 chr21 31434604 GANGSTR_441698 AAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAAT . . . INFRAME_PGEOM=0.98;INFRAME_UP=0.29;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.12;START=31434604;END=31434648;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=8;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:8:0:28.50|28.50:0|0:.:0:.:0:-1|3;0|7;5|4:0|7;5|5:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4633 chr21 31434743 GANGSTR_441699 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31434743;END=31434754;PERIOD=2;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4634 chr21 31438093 GANGSTR_441700 ACAAAACAAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31438093;END=31438107;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|54:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4635 chr21 31439578 GANGSTR_441701 TTTATTTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31439578;END=31439597;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:1:1:33.00|33.00:0|0:.:0:.:0:-13|1;0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4636 chr21 31449524 GANGSTR_441702 AGGAAGGAAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31449524;END=31449535;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4637 chr21 31451380 GANGSTR_441703 TTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31451380;END=31451387;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4638 chr21 31452997 GANGSTR_441704 TGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31452997;END=31453016;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:1:1:31.50|31.50:0|0:.:0:.:0:0|45:-2|1;0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4639 chr21 31458717 GANGSTR_441705 CATGCATGCATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31458717;END=31458728;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4640 chr21 31458873 GANGSTR_441706 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31458873;END=31458884;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|48:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4641 chr21 31464386 GANGSTR_441708 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31464386;END=31464397;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|56:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4642 chr21 31467451 GANGSTR_441709 ATTTAATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31467451;END=31467460;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4643 chr21 31475134 GANGSTR_441710 TTTAATTTAATTTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=31475134;END=31475148;PERIOD=5;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|21:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4644 chr21 31479216 GANGSTR_441711 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31479216;END=31479227;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4645 chr21 31479541 GANGSTR_441712 ACACACACACACACACACACACAC . . . INFRAME_PGEOM=0.99;INFRAME_UP=0.02;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31479541;END=31479564;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:2:1:29.00|29.00:0|0:.:0:.:0:-2|3;0|35:-2|2;0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4646 chr21 31484633 GANGSTR_441713 ACCTACCTACCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31484633;END=31484644;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4647 chr21 31489671 GANGSTR_441714 AAGGAAGGAAGGAAGGAAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31489671;END=31489690;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4648 chr21 31491215 GANGSTR_441715 TTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31491215;END=31491234;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4649 chr21 31492382 GANGSTR_441716 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31492382;END=31492393;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4650 chr21 31492470 GANGSTR_441717 ATATATATATAT . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31492470;END=31492481;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:2:1:28.00|28.00:0|0:.:0:.:0:-2|2;0|35:-2|2;0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4651 chr21 31496286 GANGSTR_441718 TGTATGTATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31496286;END=31496297;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4652 chr21 31501543 GANGSTR_441719 AAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31501543;END=31501557;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4653 chr21 31502965 GANGSTR_441720 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31502965;END=31502976;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4654 chr21 31509868 GANGSTR_441721 CATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31509868;END=31509879;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4655 chr21 31510464 GANGSTR_441722 AGCAGCAGCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31510464;END=31510475;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4656 chr21 31515513 GANGSTR_441723 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31515513;END=31515524;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4657 chr21 31517041 GANGSTR_441724 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31517041;END=31517052;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4658 chr21 31531866 GANGSTR_441725 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31531866;END=31531877;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|48:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4659 chr21 31533386 GANGSTR_441726 TAAAACAGTAAAACAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31533386;END=31533401;PERIOD=8;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|42:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4660 chr21 31533639 GANGSTR_441727 ATCAATCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31533639;END=31533646;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4661 chr21 31540285 GANGSTR_441728 CCTTTTCCTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.02;START=31540285;END=31540296;PERIOD=6;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:1:1:32.50|32.50:0|0:.:0:.:0:0|42;1|1:-12|1;0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4662 chr21 31541950 GANGSTR_441729 AATAAAATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31541950;END=31541964;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4663 chr21 31545052 GANGSTR_441730 TTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31545052;END=31545071;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|26:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4664 chr21 31545504 GANGSTR_441731 ACACACACACACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31545504;END=31545525;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:1:0:29.00|29.00:0|0:.:0:.:0:-2|1;0|38:-2|1;0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4665 chr21 31545892 GANGSTR_441732 CTATTCTATTCTATTCTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31545892;END=31545911;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4666 chr21 31547055 GANGSTR_441733 ATTTTTATTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31547055;END=31547066;PERIOD=6;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|37:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4667 chr21 31550753 GANGSTR_441734 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31550753;END=31550764;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:1:34.00|34.00:0|0:.:0:.:0:0|46:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4668 chr21 31560651 GANGSTR_441735 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31560651;END=31560662;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|42:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4669 chr21 31566852 GANGSTR_441736 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31566852;END=31566863;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4670 chr21 31568232 GANGSTR_441737 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31568232;END=31568243;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:1:37.50|37.50:0|0:.:0:.:0:-14|1;0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4671 chr21 31568303 GANGSTR_441738 TGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.98;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31568303;END=31568322;PERIOD=2;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:2:0:33.00|33.00:0|0:.:0:.:0:-2|1;0|41;2|1:-2|1;0|36;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4672 chr21 31572292 GANGSTR_441739 TAAAATAAAATAAAATAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=31572292;END=31572311;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4673 chr21 31583749 GANGSTR_441740 ATTTTTTATTTTTTATTTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31583749;END=31583769;PERIOD=7;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=6;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|33:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4674 chr21 31587859 GANGSTR_441741 TGATGATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31587859;END=31587867;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4675 chr21 31588416 GANGSTR_441742 GCTGGCTGGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31588416;END=31588427;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4676 chr21 31611563 GANGSTR_441744 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31611563;END=31611574;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4677 chr21 31613566 GANGSTR_441745 TGTTTGTTTGTTTGTTTGTTTGTTTGTT TGTTTGTTGTTTGTTTGTTTGTTTGTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.96;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31613566;END=31613593;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:77:0:0:0:39.01|37.99:0|0:371.71:-0:61:-0.1:-1|19;0|21:-1|18;0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4678 chr21 31617923 GANGSTR_441746 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31617923;END=31617937;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:34.50|25.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4679 chr21 31634529 GANGSTR_441747 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31634529;END=31634540;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4680 chr21 31635644 GANGSTR_441748 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31635644;END=31635655;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4681 chr21 31636867 GANGSTR_441749 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31636867;END=31636878;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4682 chr21 31636953 GANGSTR_441750 ATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31636953;END=31636962;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4683 chr21 31637833 GANGSTR_441751 AAAATTAAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31637833;END=31637844;PERIOD=6;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:1:33.00|33.00:0|0:.:0:.:0:-1|1;0|45:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4684 chr21 31643370 GANGSTR_441752 AACAACAACAACAAC AACAACAACAACAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.96;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31643370;END=31643384;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:60:0:0:2:26.58|33.42:0|0:93.51:-0.37:57:-0.1:-1|26;0|19:-1|25;0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4685 chr21 31645564 GANGSTR_441753 CCTTTCCTTTCCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31645564;END=31645578;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4686 chr21 31651900 GANGSTR_441754 TTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31651900;END=31651911;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|48:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4687 chr21 31654900 GANGSTR_441755 GCTGGGGCTGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31654900;END=31654911;PERIOD=6;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|36:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4688 chr21 31666486 GANGSTR_441756 TTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31666486;END=31666500;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|38:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4689 chr21 31675082 GANGSTR_441758 TTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31675082;END=31675090;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4690 chr21 31675712 GANGSTR_441759 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31675712;END=31675723;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4691 chr21 31677877 GANGSTR_441760 ATTAATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31677877;END=31677888;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4692 chr21 31678773 GANGSTR_441761 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31678773;END=31678784;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4693 chr21 31679417 GANGSTR_441762 TGGCTGGCTGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31679417;END=31679428;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4694 chr21 31680500 GANGSTR_441763 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31680500;END=31680511;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:36.45|33.55:0|0:.:0:.:0:0|57:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4695 chr21 31683270 GANGSTR_441764 ATTAGATTAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31683270;END=31683279;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:38.00|34.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4696 chr21 31688435 GANGSTR_441765 TTAAATAAATAAA TCAAATAAATAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31688436;END=31688447;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:63:0:0:0:36.49|26.51:0|0:83.11:-0.64:56:-0.23:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4697 chr21 31689015 GANGSTR_441766 AACAGAACAGAACAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31689015;END=31689029;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4698 chr21 31693024 GANGSTR_441767 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31693024;END=31693035;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4699 chr21 31699152 GANGSTR_441768 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31699152;END=31699163;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4700 chr21 31713811 GANGSTR_441769 TTTATGTTTATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31713811;END=31713822;PERIOD=6;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|49:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4701 chr21 31715779 GANGSTR_441770 TGATGATGATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31715779;END=31715790;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|36:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4702 chr21 31723034 GANGSTR_441771 CACACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31723034;END=31723047;PERIOD=2;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4703 chr21 31724034 GANGSTR_441772 TTTATTTATTTATTTATTTATTTATTTATTTATTTA TTTATTTATTTATTTATTTATTTATTTATTTA . . INFRAME_PGEOM=0.97;INFRAME_UP=0.09;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=31724034;END=31724069;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:51:0:0:0:25.90|25.10:0|0:4.47:0:21:-0.17:-4|9;0|11:-4|9;0|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4704 chr21 31724463 GANGSTR_441773 TATCTATCTATCTATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31724463;END=31724478;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4705 chr21 31726941 GANGSTR_441774 TTTCCTTTCCTTTCCTTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31726941;END=31726960;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4706 chr21 31732708 GANGSTR_441775 TCTGTCTGTCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31732708;END=31732719;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4707 chr21 31735866 GANGSTR_441776 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31735866;END=31735880;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4708 chr21 31739903 GANGSTR_441777 TTTGTTTGTTTGTTTGTTTGTTTGTTTG TTTGTTTGTTTGTTTGTTTGTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31739903;END=31739930;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:74:0:0:0:37.00|37.00:0|0:12.74:0:.:0:-4|41:-4|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4709 chr21 31745298 GANGSTR_441778 ATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31745298;END=31745307;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4710 chr21 31746642 GANGSTR_441779 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31746642;END=31746653;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|42:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4711 chr21 31748126 GANGSTR_441780 CAAACAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31748126;END=31748145;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:-16|1;0|28:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4712 chr21 31752579 GANGSTR_441781 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31752579;END=31752590;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:21.00|29.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4713 chr21 31754083 GANGSTR_441782 TTAATTTAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31754083;END=31754092;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4714 chr21 31758029 GANGSTR_441783 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31758029;END=31758040;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4715 chr21 31760529 GANGSTR_441784 TATGTATGTATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31760529;END=31760540;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4716 chr21 31762666 GANGSTR_441785 TGTTTGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31762666;END=31762681;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4717 chr21 31766270 GANGSTR_441786 AGGCAGAGGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31766270;END=31766281;PERIOD=6;NSKIP=0;NFILT=0;DP=87;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:87:0:0:1:43.50|43.50:0|0:.:0:.:0:0|58:0|60:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4718 chr21 31767758 GANGSTR_441787 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31767758;END=31767769;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4719 chr21 31771778 GANGSTR_441788 TCTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31771780;END=31771797;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:52:0:0:0:26.00|26.00:0|0:13.21:0:.:0:0|33:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4720 chr21 31774176 GANGSTR_441789 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31774176;END=31774187;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.50|32.50:0|0:.:0:.:0:-1|1;0|45:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4721 chr21 31781548 GANGSTR_441791 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31781548;END=31781559;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:1:34.50|34.50:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4722 chr21 31785908 GANGSTR_441792 CACACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31785908;END=31785921;PERIOD=2;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4723 chr21 31799320 GANGSTR_441793 TCTTTCTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31799320;END=31799331;PERIOD=6;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|44:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4724 chr21 31803369 GANGSTR_441794 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31803369;END=31803380;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4725 chr21 31806884 GANGSTR_441795 CAACAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=31806884;END=31806898;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:1:28.63|22.37:0|0:.:0:.:0:-1|1;0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4726 chr21 31808022 GANGSTR_441796 TCTTCTTCTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=31808022;END=31808033;PERIOD=3;NSKIP=0;NFILT=0;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:36:0:0:0:18.00|18.00:0|0:.:0:.:0:0|24:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4727 chr21 31811438 GANGSTR_441797 AGAAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31811438;END=31811447;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4728 chr21 31813761 GANGSTR_441798 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31813761;END=31813776;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:2:30.00|30.00:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4729 chr21 31819723 GANGSTR_441799 GCATTGCATTGCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31819723;END=31819737;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4730 chr21 31825130 GANGSTR_441801 AGAGAGAGAGAGAGA AGAGAGAGAGAGAG . . INFRAME_PGEOM=0.97;INFRAME_UP=0.02;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.97;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.05;START=31825130;END=31825143;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=46;DSNP=0;DSTUTTER=2;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:46:0:2:2:19.60|26.40:0|0:27.98:-0.47:39:0:-3|1;-2|1;-1|18;0|17:-3|1;-2|1;-1|17;0|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4731 chr21 31826349 GANGSTR_441802 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31826349;END=31826360;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4732 chr21 31834588 GANGSTR_441803 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31834588;END=31834599;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4733 chr21 31838800 GANGSTR_441804 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.62;INFRAME_UP=0.06;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=31838800;END=31838837;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6,8;DP=72;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-6|8:1:0.5:72:0:2:0:39.06|32.94:0|0:28.37:-0.38:38:-0.12:-16|2;-14|1;-12|1;-8|1;-6|17;-5|1;0|1;8|8:-8|1;-6|15;8|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4734 chr21 31850142 GANGSTR_441805 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31850142;END=31850156;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4735 chr21 31852560 GANGSTR_441806 CCATAGCCATAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31852560;END=31852571;PERIOD=6;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4736 chr21 31861833 GANGSTR_441808 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31861833;END=31861844;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4737 chr21 31864199 GANGSTR_441809 CCATAGCCATAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31864199;END=31864210;PERIOD=6;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4738 chr21 31865605 GANGSTR_441810 ATATATATATAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31865605;END=31865616;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:1:0:24.50|24.50:0|0:.:0:.:0:-2|1;0|32:-2|1;0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4739 chr21 31866245 GANGSTR_441811 CTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31866245;END=31866256;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4740 chr21 31866697 GANGSTR_441812 TTTGGTTTGGTTTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31866697;END=31866711;PERIOD=5;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4741 chr21 31867532 GANGSTR_441813 TTATATATTATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31867532;END=31867545;PERIOD=7;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|26:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4742 chr21 31869352 GANGSTR_441814 CCATAGCCATAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31869352;END=31869363;PERIOD=6;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|37:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4743 chr21 31873415 GANGSTR_441815 TCCTCCTCCTCC . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31873415;END=31873426;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:1:0:24.50|24.50:0|0:.:0:.:0:-3|1;0|32:-3|1;0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4744 chr21 31874332 GANGSTR_441816 CCATAGCCATAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31874332;END=31874343;PERIOD=6;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|43:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4745 chr21 31875290 GANGSTR_441817 CTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31875290;END=31875301;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|56:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4746 chr21 31875503 GANGSTR_441818 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31875503;END=31875514;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4747 chr21 31877338 GANGSTR_441819 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31877338;END=31877349;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4748 chr21 31881277 GANGSTR_441820 CAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31881277;END=31881291;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4749 chr21 31881421 GANGSTR_441821 ATGATGATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31881421;END=31881429;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|51:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4750 chr21 31892319 GANGSTR_441823 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31892319;END=31892330;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:1:33.50|33.50:0|0:.:0:.:0:0|53:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4751 chr21 31894451 GANGSTR_441824 TTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=31894451;END=31894465;PERIOD=3;NSKIP=0;NFILT=0;DP=31;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:31:0:0:0:15.50|15.50:0|0:.:0:.:0:0|23:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4752 chr21 31895033 GANGSTR_441825 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31895033;END=31895044;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4753 chr21 31901102 GANGSTR_441826 CTGCTGCTGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31901102;END=31901113;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4754 chr21 31902979 GANGSTR_441827 TTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31902979;END=31902998;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:2:26.00|26.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4755 chr21 31905608 GANGSTR_441828 TCTTGATCTCTTGATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31905608;END=31905623;PERIOD=8;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|35:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4756 chr21 31906475 GANGSTR_441829 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31906475;END=31906486;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4757 chr21 31908427 GANGSTR_441830 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31908427;END=31908441;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:1:34.50|34.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4758 chr21 31914070 GANGSTR_441831 CCACAGCCACAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31914070;END=31914081;PERIOD=6;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4759 chr21 31914328 GANGSTR_441832 TTTCTTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31914328;END=31914337;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4760 chr21 31925048 GANGSTR_441833 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.29;INFRAME_DOWN=0.17;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=31925048;END=31925103;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=65;DSNP=0;DSTUTTER=12;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:65:0:12:1:32.50|32.50:0|0:6.95:0:.:0:-2|4;0|7;2|5:-2|2;0|5;2|4:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4761 chr21 31925417 GANGSTR_441834 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31925417;END=31925428;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4762 chr21 31932993 GANGSTR_441835 GAGGAGGAGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31932993;END=31933004;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4763 chr21 31937787 GANGSTR_441836 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31937787;END=31937798;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4764 chr21 31941446 GANGSTR_441837 GAAGGAAGGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31941446;END=31941457;PERIOD=4;NSKIP=0;NFILT=0;DP=35;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:0:1:17.50|17.50:0|0:.:0:.:0:0|26:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4765 chr21 31942113 GANGSTR_441838 ATTAATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31942113;END=31942124;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4766 chr21 31942750 GANGSTR_441839 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31942750;END=31942761;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:1:23.50|23.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4767 chr21 31944812 GANGSTR_441840 GATAGATAGATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31944812;END=31944823;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4768 chr21 31945356 GANGSTR_441841 TGCGCGCACACACACACACACA TACGCGCACACACACACACACA . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31945362;END=31945377;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=52;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:52:0:1:1:26.00|26.00:0|0:12.27:0:.:0:-2|1;0|35:-2|1;0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4769 chr21 31946412 GANGSTR_441842 TTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31946412;END=31946420;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:2:32.50|32.50:0|0:.:0:.:0:0|47:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4770 chr21 31949303 GANGSTR_441843 TTTGTTTGTTTGTTTGTTTGTTTGTTTG TTTGTTTGTTTGTTTGTTTGTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31949303;END=31949330;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:71:0:0:0:35.50|35.50:0|0:11.88:0:.:0:-4|38:-4|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4771 chr21 31950098 GANGSTR_441844 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31950098;END=31950109;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4772 chr21 31951754 GANGSTR_441845 GAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31951754;END=31951761;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4773 chr21 31952987 GANGSTR_441846 ATCATCATCATCATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31952987;END=31953001;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4774 chr21 31959150 GANGSTR_441847 GTGGTGGTGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31959150;END=31959161;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4775 chr21 31959598 GANGSTR_441848 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31959598;END=31959609;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4776 chr21 31960344 GANGSTR_441849 CACACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31960344;END=31960357;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:0|38:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4777 chr21 31965010 GANGSTR_441850 TGGCTATGGCTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=31965010;END=31965021;PERIOD=6;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4778 chr21 31966940 GANGSTR_441851 GAAAGGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31966940;END=31966949;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4779 chr21 31973047 GANGSTR_441852 ACAACAACAACAACAACAACAACAACA ACAACAACAACAACAACAACAACAAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31973047;END=31973073;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:63:0:0:0:31.50|31.50:0|0:15.35:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4780 chr21 31973924 GANGSTR_441853 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31973924;END=31973935;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4781 chr21 31978592 GANGSTR_441854 ACAATACAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31978592;END=31978601;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4782 chr21 31980310 GANGSTR_441855 TTGTTTGTTTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31980310;END=31980329;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:2:33.00|33.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4783 chr21 31980689 GANGSTR_441856 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31980689;END=31980703;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4784 chr21 31981638 GANGSTR_441857 TTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31981638;END=31981649;PERIOD=4;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|54:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4785 chr21 31984414 GANGSTR_441858 ATACATACATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31984414;END=31984425;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|54:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4786 chr21 31984556 GANGSTR_441859 TCTCTCTCTCTCTCTC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=31984556;END=31984571;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:1:0:29.50|29.50:0|0:.:0:.:0:-2|1;0|45:-2|1;0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4787 chr21 32006945 GANGSTR_441860 AACTAACTAACTAACT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32006945;END=32006960;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:1:0:32.00|32.00:0|0:.:0:.:0:-4|1;0|43:-4|1;0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4788 chr21 32019536 GANGSTR_441861 TATGTATGTATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32019536;END=32019547;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4789 chr21 32021687 GANGSTR_441862 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32021687;END=32021698;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4790 chr21 32027419 GANGSTR_441863 CAAAAACAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32027419;END=32027430;PERIOD=6;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4791 chr21 32052773 GANGSTR_441864 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32052773;END=32052784;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|45:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4792 chr21 32055168 GANGSTR_441865 GTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32055168;END=32055185;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:59:0:0:0:29.50|29.50:0|0:13.64:0:.:0:-2|46:-2|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4793 chr21 32055982 GANGSTR_441866 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32055982;END=32055993;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4794 chr21 32060140 GANGSTR_441867 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32060140;END=32060155;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4795 chr21 32064478 GANGSTR_441869 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32064478;END=32064489;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|53:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4796 chr21 32067907 GANGSTR_441870 CAAACAAACAAACAAACAAA CAAACAAACAAACAAACAAACAAA . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32067907;END=32067926;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=63;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:63:0:1:0:31.50|31.50:0|0:10.08:0:.:0:-18|1;-17|1;-8|1;0|1;4|32:0|1;4|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4797 chr21 32071450 GANGSTR_441871 CTTCCTTCCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32071450;END=32071461;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4798 chr21 32076448 GANGSTR_441872 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32076448;END=32076459;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4799 chr21 32079632 GANGSTR_441873 AAAACAAAACAAAAC AAAACAAAACAAAACAAAAC . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32079632;END=32079646;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=5;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:5|5:1:1:63:0:0:0:31.50|31.50:0|0:14.24:0:.:0:-9|3;-7|3;0|3;5|40:5|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4800 chr21 32080258 GANGSTR_441874 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32080258;END=32080273;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4801 chr21 32090080 GANGSTR_441876 GTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.68;INFRAME_UP=0.05;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=32090080;END=32090107;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6,8;DP=62;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:6|8:1:0.5:62:0:2:1:30.95|31.05:0|0:9.48:-0:39:-0.49:-11|1;-9|2;-7|2;-2|1;0|1;4|2;6|18;8|16:4|1;6|18;8|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4802 chr21 32093456 GANGSTR_441877 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32093456;END=32093470;PERIOD=5;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4803 chr21 32098787 GANGSTR_441879 CTTTTCTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32098787;END=32098796;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4804 chr21 32105651 GANGSTR_441880 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32105651;END=32105662;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4805 chr21 32115392 GANGSTR_441881 AATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=32115392;END=32115406;PERIOD=3;NSKIP=0;NFILT=0;DP=32;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:32:0:0:1:16.00|16.00:0|0:.:0:.:0:0|25:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4806 chr21 32119950 GANGSTR_441882 CATCATCATCATCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32119950;END=32119964;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4807 chr21 32124932 GANGSTR_441883 ACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.63;INFRAME_UP=0.04;INFRAME_DOWN=0.38;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=32124932;END=32124973;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=55;DSNP=0;DSTUTTER=6;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-6:0.99:0.5:55:0:6:0:33.05|21.95:0|0:2.2:-1.53:31:-0.63:-6|7;-2|6;0|12:-6|6;-2|6;0|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4808 chr21 32125908 GANGSTR_441884 ATTATTATTATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32125908;END=32125931;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|29:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4809 chr21 32131369 GANGSTR_441885 GTTTGTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32131369;END=32131384;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4810 chr21 32139085 GANGSTR_441888 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32139085;END=32139096;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|29:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4811 chr21 32140133 GANGSTR_441889 TTATTTTATTTTATTTTATTTTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=32140133;END=32140162;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|17:0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4812 chr21 32142057 GANGSTR_441890 AATTGAATTGAATTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32142057;END=32142071;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4813 chr21 32147079 GANGSTR_441891 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32147079;END=32147090;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|49:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4814 chr21 32154292 GANGSTR_441892 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32154292;END=32154307;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4815 chr21 32172168 GANGSTR_441893 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.02;START=32172168;END=32172179;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:2:27.50|27.50:0|0:.:0:.:0:0|37;1|1:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4816 chr21 32177330 GANGSTR_441895 CACACACACACACACACACACACACACACACACACACA . . . INFRAME_PGEOM=0.82;INFRAME_UP=0.07;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32177330;END=32177367;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=4;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:4:1:28.00|28.00:0|0:.:0:.:0:-4|1;-2|1;0|24;2|2:-4|1;-2|1;0|21;2|2:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4817 chr21 32182278 GANGSTR_441896 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32182278;END=32182289;PERIOD=2;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|34:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4818 chr21 32183572 GANGSTR_441897 GTGGGTGGGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32183572;END=32183583;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4819 chr21 32198038 GANGSTR_441899 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32198038;END=32198049;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4820 chr21 32201773 GANGSTR_441901 AGCCAGAGCCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32201773;END=32201784;PERIOD=6;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:27.50|30.50:0|0:.:0:.:0:0|34:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4821 chr21 32206523 GANGSTR_441902 TGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTT TGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=32206523;END=32206554;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=8;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:8|8:1:1:73:0:0:0:36.50|36.50:0|0:9.24:0:.:0:-9|2;-1|2;2|1;8|21:8|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4822 chr21 32208495 GANGSTR_441903 GGATGGATGGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32208495;END=32208506;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4823 chr21 32209965 GANGSTR_441904 CAACAACAACAACAA CAACAACAACAACAACAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32209965;END=32209979;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=3;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:3|3:1:1:62:0:0:0:31.00|31.00:0|0:12.78:0:.:0:-5|3;3|38:3|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4824 chr21 32210289 GANGSTR_441905 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32210289;END=32210303;PERIOD=5;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4825 chr21 32217201 GANGSTR_441906 TCATTCATTCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32217201;END=32217212;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:1:34.00|34.00:0|0:.:0:.:0:-1|1;0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4826 chr21 32217396 GANGSTR_441907 AAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32217396;END=32217403;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4827 chr21 32224274 GANGSTR_441908 TTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32224274;END=32224293;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|27:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4828 chr21 32227968 GANGSTR_441909 ATGTATGTATGTATGTATGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32227968;END=32227987;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4829 chr21 32235802 GANGSTR_441910 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32235802;END=32235813;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4830 chr21 32238481 GANGSTR_441912 ACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.94;INFRAME_UP=0.04;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=32238481;END=32238520;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-10,-2;DP=59;DSNP=0;DSTUTTER=3;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-10|-2:1:0.5:59:0:3:2:29.96|29.04:0|0:11.25:-0.06:38:-1.02:-10|17;-4|2;-3|2;-2|9;2|1:-10|14;-4|3;-2|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4831 chr21 32241361 GANGSTR_441913 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32241361;END=32241372;PERIOD=2;NSKIP=0;NFILT=0;DP=35;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:0:1:17.50|17.50:0|0:.:0:.:0:0|27;2|1:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4832 chr21 32246302 GANGSTR_441914 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32246302;END=32246313;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4833 chr21 32246632 GANGSTR_441915 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32246632;END=32246643;PERIOD=2;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|52:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4834 chr21 32247988 GANGSTR_441916 TAAAAATAAAAATAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32247988;END=32248005;PERIOD=6;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4835 chr21 32249051 GANGSTR_441917 ATCCATCCATCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32249051;END=32249062;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4836 chr21 32256418 GANGSTR_441919 AATCAATCAATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32256418;END=32256429;PERIOD=4;NSKIP=0;NFILT=0;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:78:0:0:1:39.00|39.00:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4837 chr21 32260433 GANGSTR_441920 CGCACACACACACACACACACACACA CACACACACACACACACACA,CACACACACACACACACACACACA . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32260435;END=32260458;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6,-2;DP=55;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-6|-2:1:0.5:55:0:1:0:25.67|29.33:0|0:53.02:-0.12:41:0:-6|17;-4|1;0|21:-6|17;-4|1;-2|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4838 chr21 32264848 GANGSTR_441922 TCTCTCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32264848;END=32264865;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4839 chr21 32268287 GANGSTR_441923 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32268287;END=32268298;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4840 chr21 32269923 GANGSTR_441924 ATACATACATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32269923;END=32269934;PERIOD=4;NSKIP=0;NFILT=0;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:78:0:0:0:39.00|39.00:0|0:.:0:.:0:0|52:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4841 chr21 32282124 GANGSTR_441925 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32282124;END=32282135;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4842 chr21 32298645 GANGSTR_441926 CCACCACCACCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=32298645;END=32298656;PERIOD=3;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:1:18.50|18.50:0|0:.:0:.:0:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4843 chr21 32300157 GANGSTR_441927 AAGAAAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32300157;END=32300168;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|57:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4844 chr21 32309668 GANGSTR_441928 GTGTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32309668;END=32309681;PERIOD=2;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4845 chr21 32314472 GANGSTR_441929 ACGAGAGGAGAGGAGAG ATGAGAGGAGAGGAGAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32314474;END=32314488;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:47:0:0:2:23.50|23.50:0|0:11.84:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4846 chr21 32314982 GANGSTR_441930 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32314982;END=32314997;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4847 chr21 32317043 GANGSTR_441931 GAATGAATGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32317043;END=32317054;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4848 chr21 32322723 GANGSTR_441932 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32322723;END=32322737;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4849 chr21 32323223 GANGSTR_441933 AGCAAGCAAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32323223;END=32323234;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4850 chr21 32325900 GANGSTR_441935 TTTTCTTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32325900;END=32325914;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4851 chr21 32330802 GANGSTR_441937 GTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.52;INFRAME_UP=0.03;INFRAME_DOWN=0.13;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32330802;END=32330825;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6;DP=58;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:6|6:1:1:58:0:2:0:29.00|29.00:0|0:13.9:0:.:0:0|8;2|1;4|2;6|35:2|1;4|1;6|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4852 chr21 32331259 GANGSTR_441938 TCACTCACTCAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32331259;END=32331270;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4853 chr21 32347527 GANGSTR_441939 TTATTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32347527;END=32347544;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4854 chr21 32349624 GANGSTR_441940 TGTGTGTGTGTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32349624;END=32349635;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:1:0:32.50|32.50:0|0:.:0:.:0:-2|1;0|49:-2|1;0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4855 chr21 32349847 GANGSTR_441941 ATGGATTAATGGATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32349847;END=32349862;PERIOD=8;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|36:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4856 chr21 32350079 GANGSTR_441942 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32350079;END=32350090;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4857 chr21 32355290 GANGSTR_441943 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32355290;END=32355301;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4858 chr21 32358730 GANGSTR_441944 TTTCTTTTCTTTTCTTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32358730;END=32358749;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4859 chr21 32366151 GANGSTR_441945 TCTATACATCTATACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32366151;END=32366166;PERIOD=8;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|37:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4860 chr21 32366289 GANGSTR_441946 CTATACATCTATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32366289;END=32366304;PERIOD=8;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|37:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4861 chr21 32366551 GANGSTR_441947 CTGTACATCTGTACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32366551;END=32366566;PERIOD=8;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|43:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4862 chr21 32378152 GANGSTR_441948 AAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32378152;END=32378159;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|60:0|60:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4863 chr21 32387892 GANGSTR_441949 ATTTTATTTTATTTTATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=32387892;END=32387921;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|19:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4864 chr21 32405189 GANGSTR_441950 ATGAATGAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32405189;END=32405200;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4865 chr21 32410685 GANGSTR_441951 GCCATAGCCATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32410685;END=32410696;PERIOD=6;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|29:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4866 chr21 32414824 GANGSTR_441952 AATTATAAATTATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32414824;END=32414837;PERIOD=7;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4867 chr21 32414965 GANGSTR_441953 TGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.96;INFRAME_UP=0.09;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32414965;END=32414990;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=60;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:60:0:2:1:30.38|29.62:0|0:7.14:-0:33:-0.31:-2|1;0|19;2|9;4|1:-2|1;0|14;2|10;4|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4868 chr21 32417151 GANGSTR_441954 CTCCCTCCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32417151;END=32417162;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:-1|1;0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4869 chr21 32417471 GANGSTR_441955 ATATATATATAT ATATATATATGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32417471;END=32417482;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:59:0:0:0:29.50|29.50:0|0:16.24:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4870 chr21 32428292 GANGSTR_441956 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.93;INFRAME_UP=0.1;INFRAME_DOWN=0.13;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=32428292;END=32428337;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-8,-6;DP=48;DSNP=0;DSTUTTER=3;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-8|-6:1:0.5:48:0:3:1:23.60|24.40:0|0:3.95:-0.07:28:0:-10|1;-8|12;-7|1;-6|12;-4|1:-10|1;-8|9;-6|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4871 chr21 32434750 GANGSTR_441958 CATCATCATCATTCACC CATCATCATCATTCACT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32434750;END=32434761;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:63:0:0:0:27.00|36.00:0|0:91.74:-0.53:59:-0.72:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4872 chr21 32439933 GANGSTR_441959 GATGGATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32439933;END=32439940;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4873 chr21 32440769 GANGSTR_441960 ACTTACTTACTTACTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32440769;END=32440784;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:27.50|38.50:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4874 chr21 32443396 GANGSTR_441961 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32443396;END=32443407;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4875 chr21 32444085 GANGSTR_441962 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32444085;END=32444096;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4876 chr21 32454762 GANGSTR_441963 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32454762;END=32454773;PERIOD=2;NSKIP=0;NFILT=0;DP=33;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:33:0:0:0:16.50|16.50:0|0:.:0:.:0:0|26:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4877 chr21 32456393 GANGSTR_441964 AAATAAATAAATAAAT AAATAAATAAATAAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32456393;END=32456408;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:59:0:0:0:27.48|31.52:0|0:75.99:-0.17:52:-1.64:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4878 chr21 32457011 GANGSTR_441965 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32457011;END=32457025;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4879 chr21 32458627 GANGSTR_441966 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32458627;END=32458638;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4880 chr21 32466882 GANGSTR_441968 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32466882;END=32466893;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4881 chr21 32468640 GANGSTR_441969 ACATACATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32468640;END=32468651;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4882 chr21 32469236 GANGSTR_441970 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32469236;END=32469247;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4883 chr21 32481010 GANGSTR_441971 TTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32481010;END=32481024;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4884 chr21 32484490 GANGSTR_441972 TATATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=32484490;END=32484505;PERIOD=2;NSKIP=0;NFILT=0;DP=26;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:26:0:0:2:13.00|13.00:0|0:.:0:.:0:0|15:0|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4885 chr21 32485282 GANGSTR_441973 AGGGAGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32485282;END=32485293;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4886 chr21 32486284 GANGSTR_441974 CAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32486284;END=32486298;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4887 chr21 32488767 GANGSTR_441975 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32488767;END=32488778;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4888 chr21 32493159 GANGSTR_441976 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32493159;END=32493170;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4889 chr21 32494596 GANGSTR_441977 AAACAAACAAACTCT AAACAAACAAACTCC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.02;START=32494596;END=32494607;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:74:0:0:2:37.00|37.00:0|0:17.46:0:.:0:0|47;1|1:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4890 chr21 32506400 GANGSTR_441978 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32506400;END=32506414;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4891 chr21 32506826 GANGSTR_441979 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32506826;END=32506840;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4892 chr21 32511833 GANGSTR_441980 AATCAAAATCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32511833;END=32511844;PERIOD=6;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4893 chr21 32513361 GANGSTR_441981 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32513361;END=32513376;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:1:33.00|33.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4894 chr21 32523984 GANGSTR_441982 GTGTGTGTGTGT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32523984;END=32523995;PERIOD=2;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:1:0:23.50|23.50:0|0:.:0:.:0:-2|1;0|37:-2|1;0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4895 chr21 32526031 GANGSTR_441983 ATATATATATATATAT ATATATATATAT,ATATATATATATATATAT . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32526031;END=32526046;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4,2;DP=42;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|2:1:0.5:42:0:1:0:22.00|20.00:0|0:17.72:-0.06:34:-0.13:-4|17;0|2;2|11:-4|17;0|1;2|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4896 chr21 32533353 GANGSTR_441984 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=1;INFRAME_UP=0.09;INFRAME_DOWN=0.19;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=32533353;END=32533394;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6,2;DP=64;DSNP=0;DSTUTTER=4;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-6|2:1:0.5:64:0:4:2:36.56|27.44:0|0:5.77:-0.55:31:0:-8|3;-6|17;2|3;4|1:-8|3;-6|13;2|3;4|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4897 chr21 32541971 GANGSTR_441986 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32541971;END=32541982;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4898 chr21 32542303 GANGSTR_441987 AGGAAAGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32542303;END=32542312;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4899 chr21 32544614 GANGSTR_441988 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.96;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.06;START=32544614;END=32544625;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:3:36.50|36.50:0|0:.:0:.:0:-1|2;0|40;1|1:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4900 chr21 32553506 GANGSTR_441989 TCACTCACTCAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32553506;END=32553517;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4901 chr21 32555751 GANGSTR_441991 AAATAAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32555751;END=32555760;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4902 chr21 32556264 GANGSTR_441992 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32556264;END=32556275;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4903 chr21 32556420 GANGSTR_441993 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32556420;END=32556434;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:27.08|25.92:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4904 chr21 32559283 GANGSTR_441994 AGACAGACAGAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32559283;END=32559294;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4905 chr21 32560889 GANGSTR_441995 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32560889;END=32560900;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4906 chr21 32563472 GANGSTR_441996 CTTTTCTTTTCTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.06;START=32563472;END=32563486;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:3:25.00|25.00:0|0:.:0:.:0:-1|1;0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4907 chr21 32575339 GANGSTR_441997 AAAGAAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32575339;END=32575354;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4908 chr21 32575431 GANGSTR_441998 TTGTTGTTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32575431;END=32575451;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:28.00|31.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4909 chr21 32579253 GANGSTR_441999 ACACACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32579253;END=32579268;PERIOD=2;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:1:1:36.97|33.03:0|0:.:0:.:0:-2|1;0|46:-2|1;0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4910 chr21 32583301 GANGSTR_442000 ATATTTATATTTATATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=32583301;END=32583318;PERIOD=6;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4911 chr21 32588486 GANGSTR_442001 AAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32588486;END=32588500;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4912 chr21 32592051 GANGSTR_442002 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.98;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=32592051;END=32592065;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:2:27.00|27.00:0|0:.:0:.:0:-1|1;0|36:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4913 chr21 32610178 GANGSTR_442003 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32610178;END=32610189;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4914 chr21 32611156 GANGSTR_442004 TTGAGTTGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32611156;END=32611165;PERIOD=5;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4915 chr21 32616303 GANGSTR_442005 GTGGGGTGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32616303;END=32616312;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4916 chr21 32623958 GANGSTR_442006 AACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32623958;END=32623972;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4917 chr21 32624980 GANGSTR_442007 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32624980;END=32624991;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4918 chr21 32626021 GANGSTR_442008 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32626021;END=32626032;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4919 chr21 32628905 GANGSTR_442009 ACACACACACACACACACACACACACACACACACACACACGT ACACACACACACACACACACACACACACACACACACACACACACACACGA,ACACACACACACACACACACACACACACACACACACACACACACACACACGA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.19;INFRAME_DOWN=0.13;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=32628905;END=32628944;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=8,10;DP=62;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 2|1:10|8:0.99:0.5:62:0:1:0:30.59|31.41:0|0:2.02:-0.06:34:-0.5:-1|4;0|1;3|1;6|2;8|13;10|14:6|1;8|13;10|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4920 chr21 32631946 GANGSTR_442010 AATAATAATAATAATAATAATAATAAT AATAATAATAATAATAATAATAATAATAATAAT . . INFRAME_PGEOM=1;INFRAME_UP=0.22;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=32631946;END=32631972;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=6;DP=38;DSNP=0;DSTUTTER=8;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:6|6:1:1:38:0:8:0:19.00|19.00:0|0:6.17:0:.:0:-4|1;-2|1;1|7;6|6;9|4:6|7;9|5:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4921 chr21 32634364 GANGSTR_442011 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32634364;END=32634375;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4922 chr21 32637319 GANGSTR_442012 TTTCTTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32637319;END=32637334;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|26:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4923 chr21 32641121 GANGSTR_442013 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32641121;END=32641132;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4924 chr21 32642837 GANGSTR_442014 GGAGGGAGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32642837;END=32642848;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4925 chr21 32642911 GANGSTR_442015 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32642911;END=32642922;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4926 chr21 32643104 GANGSTR_442016 TTCTTCTTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32643104;END=32643115;PERIOD=3;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:1:1:20.50|20.50:0|0:.:0:.:0:0|31:-3|1;0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4927 chr21 32643188 GANGSTR_442017 GCCTGTGCCTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32643188;END=32643199;PERIOD=6;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:1:21.00|21.00:0|0:.:0:.:0:-8|1;0|31:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4928 chr21 32644721 GANGSTR_442019 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32644721;END=32644732;PERIOD=2;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|34:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4929 chr21 32644990 GANGSTR_442020 TAACTAACTAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32644990;END=32645001;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4930 chr21 32645125 GANGSTR_442021 CAACAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32645125;END=32645139;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4931 chr21 32650229 GANGSTR_442022 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32650229;END=32650240;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|54:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4932 chr21 32651444 GANGSTR_442023 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32651444;END=32651455;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4933 chr21 32654205 GANGSTR_442024 GATGGATGGATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32654205;END=32654216;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4934 chr21 32663633 GANGSTR_442025 AACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32663633;END=32663647;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|43:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4935 chr21 32664558 GANGSTR_442026 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32664558;END=32664569;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4936 chr21 32668128 GANGSTR_442027 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32668128;END=32668139;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4937 chr21 32671427 GANGSTR_442028 TCTTGTCTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32671427;END=32671436;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4938 chr21 32676298 GANGSTR_442029 AAAGAAAAGAAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32676298;END=32676312;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4939 chr21 32677395 GANGSTR_442030 AGACAGACAGAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32677395;END=32677406;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4940 chr21 32682689 GANGSTR_442031 CAGCCAGCCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32682689;END=32682700;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:27.50|21.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4941 chr21 32687307 GANGSTR_442032 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32687307;END=32687318;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4942 chr21 32690110 GANGSTR_442033 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32690110;END=32690121;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4943 chr21 32692284 GANGSTR_442034 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32692284;END=32692295;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4944 chr21 32693650 GANGSTR_442035 TGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTT TGTTTGTTTGTTTGTTTGTTTGTT . . INFRAME_PGEOM=0.91;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=32693650;END=32693681;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-8;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-8:1:0.5:58:0:0:0:31.42|26.58:0|0:21.5:-0.31:33:-0.76:-8|11;0|12:-8|11;0|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4945 chr21 32700686 GANGSTR_442036 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32700686;END=32700700;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4946 chr21 32704470 GANGSTR_442037 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32704470;END=32704481;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4947 chr21 32705402 GANGSTR_442038 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32705402;END=32705413;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:1:36.00|36.00:0|0:.:0:.:0:-14|1;0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4948 chr21 32706284 GANGSTR_442039 TACCTTACCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32706284;END=32706293;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|54:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4949 chr21 32718268 GANGSTR_442040 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32718268;END=32718279;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|51:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4950 chr21 32718508 GANGSTR_442041 TGCTGCTGCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32718508;END=32718519;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4951 chr21 32719197 GANGSTR_442042 TGGGTGGGTGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32719197;END=32719208;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4952 chr21 32720412 GANGSTR_442043 CTCTCTCTCTCT CTCTCTCTCTAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32720412;END=32720423;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:57:0:0:0:33.49|23.51:0|0:65.87:-0.67:52:-0:0|46:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4953 chr21 32720726 GANGSTR_442044 CTCCTCCTCCTCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32720726;END=32720740;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4954 chr21 32723856 GANGSTR_442045 CAAGCAAGCAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32723856;END=32723867;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4955 chr21 32731454 GANGSTR_442047 CCCACCCACCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32731454;END=32731465;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4956 chr21 32731783 GANGSTR_442048 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32731783;END=32731794;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|27:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4957 chr21 32732586 GANGSTR_442049 ATAATAATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32732586;END=32732603;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4958 chr21 32734761 GANGSTR_442050 ATTATTATTATTATTATTATTATTATTATTATT . . . INFRAME_PGEOM=1;INFRAME_UP=0.13;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=32734761;END=32734793;PERIOD=3;NSKIP=0;NFILT=0;DP=28;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:28:0:1:0:18.50|9.50:0|0:.:0:.:0:0|10;3|1:0|8;3|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4959 chr21 32741241 GANGSTR_442051 AAAGAGAAAAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32741241;END=32741254;PERIOD=7;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:36.49|27.51:0|0:.:0:.:0:0|39:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4960 chr21 32742047 GANGSTR_442053 AAGAAGAAGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32742047;END=32742058;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4961 chr21 32749175 GANGSTR_442054 TTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32749175;END=32749184;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4962 chr21 32756897 GANGSTR_442055 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32756897;END=32756908;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4963 chr21 32757617 GANGSTR_442056 ATAGATAGATAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32757617;END=32757628;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4964 chr21 32758720 GANGSTR_442057 AAAAGCAAAAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32758720;END=32758731;PERIOD=6;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4965 chr21 32760526 GANGSTR_442058 ACACACACACACACACACACACACACACACACACACACACACACACA ACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACA . . INFRAME_PGEOM=0.97;INFRAME_UP=0.06;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.97;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.06;START=32760526;END=32760571;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-15,-14;DP=53;DSNP=0;DSTUTTER=4;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-15|-14:1:0.5:53:0:4:0:30.51|22.49:0|0:73.77:-0.52:46:0:-17|3;-15|16;-14|17;-13|1:-17|3;-15|16;-14|14;-13|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4966 chr21 32760803 GANGSTR_442059 AAATAAAATAAAATAAAATA AAATAAAATAAAATAAAATAAAATA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.05;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.94;OUTFRAME_UP=0.1;OUTFRAME_DOWN=0.03;START=32760803;END=32760822;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=5;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|5:1:0.5:56:0:0:0:25.25|30.75:0|0:4.91:-0.31:33:0:-23|1;0|14;1|6;5|10:0|13;5|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4967 chr21 32763943 GANGSTR_442060 AAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32763943;END=32763957;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4968 chr21 32764395 GANGSTR_442061 TAGGCTAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32764395;END=32764404;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4969 chr21 32768856 GANGSTR_442062 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=32768856;END=32768867;PERIOD=3;NSKIP=0;NFILT=0;DP=18;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:18:0:0:0:9.00|9.00:0|0:.:0:.:0:0|12:0|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4970 chr21 32771348 GANGSTR_442063 AAATAAAATAAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.06;START=32771348;END=32771362;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:1:1:29.00|29.00:0|0:.:0:.:0:-1|1;0|26:-5|1;0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4971 chr21 32772353 GANGSTR_442064 AAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32772353;END=32772360;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:1:1:33.00|33.00:0|0:.:0:.:0:0|55:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4972 chr21 32774531 GANGSTR_442065 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32774531;END=32774542;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4973 chr21 32777563 GANGSTR_442066 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32777563;END=32777574;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:1:24.00|24.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4974 chr21 32777736 GANGSTR_442067 CTTTGCTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32777736;END=32777745;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4975 chr21 32783541 GANGSTR_442068 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32783541;END=32783552;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|47:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4976 chr21 32790237 GANGSTR_442069 GAGAGAGAGAGA . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32790237;END=32790248;PERIOD=2;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:1:0:23.50|23.50:0|0:.:0:.:0:-2|1;0|34:-2|1;0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4977 chr21 32791587 GANGSTR_442070 AAGTAAAGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32791587;END=32791596;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4978 chr21 32800577 GANGSTR_442072 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32800577;END=32800588;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4979 chr21 32801308 GANGSTR_442073 TTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32801308;END=32801327;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|32:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4980 chr21 32808961 GANGSTR_442074 AATTAATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32808961;END=32808976;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|28:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4981 chr21 32810028 GANGSTR_442075 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32810028;END=32810039;PERIOD=2;NSKIP=0;NFILT=0;DP=32;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:32:0:0:0:16.00|16.00:0|0:.:0:.:0:0|25:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4982 chr21 32815935 GANGSTR_442076 CCACCACCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32815935;END=32815943;PERIOD=3;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|33:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4983 chr21 32821691 GANGSTR_442077 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32821691;END=32821706;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|45:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4984 chr21 32824746 GANGSTR_442078 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32824746;END=32824757;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|34:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4985 chr21 32831428 GANGSTR_442080 ATTGATTGATTGATTGATTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32831428;END=32831447;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4986 chr21 32832521 GANGSTR_442081 GTGGGTGGGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32832521;END=32832532;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4987 chr21 32833984 GANGSTR_442082 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32833984;END=32833995;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|44:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4988 chr21 32836363 GANGSTR_442083 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32836363;END=32836374;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4989 chr21 32841819 GANGSTR_442084 AGAAGAAGAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32841819;END=32841830;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:2:29.50|29.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4990 chr21 32844184 GANGSTR_442085 AATAATAATAATAATAATAATAATAATAAT AATAATAATAATAATAATAATAAAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32844184;END=32844213;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:62:0:0:0:31.00|31.00:0|0:13.23:0:.:0:-4|32:-4|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4991 chr21 32844843 GANGSTR_442086 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32844843;END=32844854;PERIOD=4;NSKIP=0;NFILT=0;DP=81;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:81:0:0:0:40.50|40.50:0|0:.:0:.:0:0|56:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4992 chr21 32847636 GANGSTR_442088 GGATTACGGATTAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32847636;END=32847649;PERIOD=7;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:1:23.50|23.50:0|0:.:0:.:0:-1|1;0|26:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4993 chr21 32852964 GANGSTR_442089 GGAAGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=32852964;END=32852971;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:-1|1;0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4994 chr21 32858045 GANGSTR_442090 CCACCACCACCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32858045;END=32858056;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4995 chr21 32862754 GANGSTR_442091 ATAATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32862754;END=32862768;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4996 chr21 32865090 GANGSTR_442092 ACACACACACACACACACACACACACACACACACACACACACACACAC . . . INFRAME_PGEOM=0.72;INFRAME_UP=0.05;INFRAME_DOWN=0.23;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=32865090;END=32865137;PERIOD=2;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=5;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:5:1:23.50|23.50:0|0:.:0:.:0:-4|3;-2|2;0|13:-4|2;-2|3;0|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4997 chr21 32865649 GANGSTR_442093 CAATCAATCAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32865649;END=32865660;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:2:30.50|30.50:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4998 chr21 32866047 GANGSTR_442094 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32866047;END=32866058;PERIOD=3;NSKIP=0;NFILT=0;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:36:0:0:0:18.00|18.00:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
4999 chr21 32868453 GANGSTR_442095 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32868453;END=32868467;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5000 chr21 32869021 GANGSTR_442096 CACTCACTCACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32869021;END=32869032;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5001 chr21 32872480 GANGSTR_442097 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32872480;END=32872494;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5002 chr21 32873900 GANGSTR_442098 TTTGTTTGTTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32873900;END=32873927;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5003 chr21 32874800 GANGSTR_442099 ACCACCACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32874800;END=32874808;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5004 chr21 32879229 GANGSTR_442100 CAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32879229;END=32879244;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|56:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5005 chr21 32885107 GANGSTR_442101 TGTTTGTTTGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32885107;END=32885126;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5006 chr21 32886326 GANGSTR_442102 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32886326;END=32886337;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5007 chr21 32889682 GANGSTR_442104 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32889682;END=32889693;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5008 chr21 32899015 GANGSTR_442105 TTGTTTGTTTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32899015;END=32899034;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5009 chr21 32905251 GANGSTR_442106 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32905251;END=32905262;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5010 chr21 32916530 GANGSTR_442107 AATAAATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32916530;END=32916545;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5011 chr21 32918870 GANGSTR_442108 AAAGAAAGAAAGAAAGAAAGAAAGAAAG AAAGAAAGAAAGAAAGAAAGAAAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.07;START=32918870;END=32918897;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:66:0:0:2:33.00|33.00:0|0:8.46:0:.:0:-5|1;-4|22:-4|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5012 chr21 32927313 GANGSTR_442109 GGGAAGGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32927313;END=32927322;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5013 chr21 32928734 GANGSTR_442110 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32928734;END=32928745;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5014 chr21 32931869 GANGSTR_442111 GCGCGCGCGCGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32931869;END=32931880;PERIOD=2;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|32:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5015 chr21 32935162 GANGSTR_442112 TATTTATTTATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=32935162;END=32935185;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|23:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5016 chr21 32937301 GANGSTR_442113 TATATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32937301;END=32937316;PERIOD=2;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:1:33.50|33.50:0|0:.:0:.:0:0|56:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5017 chr21 32937591 GANGSTR_442114 TTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32937591;END=32937610;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|28:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5018 chr21 32937909 GANGSTR_442115 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32937909;END=32937920;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5019 chr21 32942037 GANGSTR_442116 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32942037;END=32942048;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5020 chr21 32942921 GANGSTR_442117 TGAATTGAATTGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32942921;END=32942935;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5021 chr21 32947380 GANGSTR_442119 ATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32947380;END=32947395;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|27:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5022 chr21 32948326 GANGSTR_442120 TCAATCAATCAATCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32948326;END=32948341;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.50|32.50:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5023 chr21 32951191 GANGSTR_442121 GCAGCAGCAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32951191;END=32951202;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5024 chr21 32953071 GANGSTR_442122 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32953071;END=32953086;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5025 chr21 32954351 GANGSTR_442123 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32954351;END=32954362;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5026 chr21 32960982 GANGSTR_442124 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32960982;END=32960993;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5027 chr21 32961081 GANGSTR_442125 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32961081;END=32961092;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:2:37.00|37.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5028 chr21 32963572 GANGSTR_442126 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32963572;END=32963583;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5029 chr21 32964667 GANGSTR_442127 TGATCTGATCTGATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32964667;END=32964681;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5030 chr21 32970598 GANGSTR_442130 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32970598;END=32970609;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5031 chr21 32971075 GANGSTR_442131 ATTATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32971075;END=32971092;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5032 chr21 32971605 GANGSTR_442132 ACCCACCCACCCA ACCCCCCCCCCCC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32971605;END=32971616;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:44:0:0:0:41.50|2.50:0|0:3.39:-9.67:43:-0.63:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5033 chr21 32975906 GANGSTR_442134 ACACACACACACACACACACACACACAC ACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.93;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32975906;END=32975933;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,2;DP=67;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|2:1:0.5:67:0:3:0:31.95|35.05:0|0:15.08:-0.13:37:-0.52:-2|18;0|3;2|17:-2|14;0|3;2|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5034 chr21 32980445 GANGSTR_442135 TTTATTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32980445;END=32980468;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|27:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5035 chr21 32982890 GANGSTR_442136 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32982890;END=32982905;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5036 chr21 32987966 GANGSTR_442138 AAGAAGAAGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=32987966;END=32987977;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:1:33.50|33.50:0|0:.:0:.:0:0|56:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5037 chr21 32991928 GANGSTR_442139 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32991928;END=32991943;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|27:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5038 chr21 32996671 GANGSTR_442141 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=32996671;END=32996682;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5039 chr21 33001625 GANGSTR_442142 AAGAAGAAGAAGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33001625;END=33001639;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5040 chr21 33003050 GANGSTR_442143 TTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33003050;END=33003059;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5041 chr21 33004014 GANGSTR_442144 TTAATTAATTAATTAATTAA TTAATTAATTAATTAATTAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.98;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.04;START=33004014;END=33004033;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=1;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:1|1:1:1:59:0:0:1:29.50|29.50:0|0:10.11:0:.:0:0|7;1|21:1|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5042 chr21 33006677 GANGSTR_442146 TTTAATTTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33006677;END=33006686;PERIOD=5;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|57:0|57:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5043 chr21 33010105 GANGSTR_442147 ATTGTATTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=33010105;END=33010114;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5044 chr21 33011409 GANGSTR_442148 AAATAAAATAAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33011409;END=33011423;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5045 chr21 33011704 GANGSTR_442149 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33011704;END=33011713;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5046 chr21 33012139 GANGSTR_442150 TCTCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33012139;END=33012154;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|41:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5047 chr21 33014933 GANGSTR_442151 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33014933;END=33014952;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5048 chr21 33016923 GANGSTR_442152 AAAATAAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33016923;END=33016942;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5049 chr21 33017608 GANGSTR_442153 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33017608;END=33017619;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5050 chr21 33023976 GANGSTR_442155 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33023976;END=33023987;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5051 chr21 33036209 GANGSTR_442156 GTGCTGTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33036209;END=33036218;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5052 chr21 33036934 GANGSTR_442157 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33036934;END=33036945;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:1:36.00|36.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5053 chr21 33047720 GANGSTR_442158 CAGTGACAGTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33047720;END=33047731;PERIOD=6;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|32:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5054 chr21 33057205 GANGSTR_442159 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33057205;END=33057220;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5055 chr21 33061608 GANGSTR_442160 TTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33061608;END=33061617;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5056 chr21 33063900 GANGSTR_442161 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33063900;END=33063914;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5057 chr21 33080934 GANGSTR_442163 CAAAAACAAAAACAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33080934;END=33080951;PERIOD=6;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|36:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5058 chr21 33082264 GANGSTR_442165 CATACCCATACCCATACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33082264;END=33082281;PERIOD=6;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5059 chr21 33082872 GANGSTR_442166 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33082872;END=33082883;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|46:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5060 chr21 33083327 GANGSTR_442167 CTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33083327;END=33083338;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5061 chr21 33086057 GANGSTR_442168 GCGGGGGTGGGGT GTGGGGGTGGGGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.02;START=33086060;END=33086069;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=5;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:41:0:0:2:23.48|17.52:0|0:33.22:-0.41:34:-0.14:0|37;1|1:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5062 chr21 33107192 GANGSTR_442169 TTTGGCATTTGGCATTTGGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33107192;END=33107212;PERIOD=7;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:1:33.50|33.50:0|0:.:0:.:0:0|32:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5063 chr21 33108742 GANGSTR_442170 TTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33108742;END=33108761;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5064 chr21 33109648 GANGSTR_442171 ATTTTCATTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33109648;END=33109659;PERIOD=6;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5065 chr21 33110300 GANGSTR_442172 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33110300;END=33110311;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5066 chr21 33111836 GANGSTR_442173 AACAACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33111836;END=33111853;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5067 chr21 33111925 GANGSTR_442174 TCTATTCTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33111925;END=33111934;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:33.50|30.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5068 chr21 33112830 GANGSTR_442175 TTTCTTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33112830;END=33112839;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5069 chr21 33116900 GANGSTR_442176 TGGTTTTGTGGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33116900;END=33116915;PERIOD=8;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:27.00|31.00:0|0:.:0:.:0:0|31:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5070 chr21 33119451 GANGSTR_442177 AAACTAAACTAAACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33119451;END=33119465;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5071 chr21 33122620 GANGSTR_442178 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33122620;END=33122631;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|38:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5072 chr21 33126030 GANGSTR_442179 GAAGAAGAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33126030;END=33126041;PERIOD=3;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5073 chr21 33127225 GANGSTR_442181 TTATTTTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33127225;END=33127239;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5074 chr21 33135270 GANGSTR_442182 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33135270;END=33135281;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5075 chr21 33136921 GANGSTR_442183 ATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33136921;END=33136934;PERIOD=2;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|43:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5076 chr21 33146740 GANGSTR_442184 AAAGAAAAGAAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33146740;END=33146754;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5077 chr21 33149071 GANGSTR_442185 ACACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.94;INFRAME_UP=0.1;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=33149071;END=33149116;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-8,-6;DP=56;DSNP=0;DSTUTTER=5;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-8|-6:1:0.5:56:0:5:1:24.95|31.05:0|0:8.61:-0.47:39:-0.12:-10|2;-8|12;-6|12:-10|1;-8|12;-6|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5078 chr21 33161193 GANGSTR_442186 TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATT TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC . . INFRAME_PGEOM=0.96;INFRAME_UP=0.07;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=33161193;END=33161232;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:60:0:0:0:29.11|30.89:0|0:68.03:-0.06:40:0:0|12;4|10:0|10;4|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5079 chr21 33161539 GANGSTR_442187 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33161539;END=33161550;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5080 chr21 33163393 GANGSTR_442188 CAGTCAGTCAGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33163393;END=33163404;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|56:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5081 chr21 33171988 GANGSTR_442190 ACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.92;INFRAME_UP=0.1;INFRAME_DOWN=0.17;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33171988;END=33172031;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-10,-8;DP=65;DSNP=0;DSTUTTER=5;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-10|-8:1:0.5:65:0:5:1:35.07|29.93:0|0:3.19:-0.55:42:-0.27:-12|4;-10|20;-8|12;-6|1:-12|4;-10|20;-8|10;-6|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5082 chr21 33172372 GANGSTR_442191 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.94;INFRAME_UP=0.04;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=33172372;END=33172415;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-14,-2;DP=55;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-14|-2:1:0.5:55:0:3:0:26.95|28.05:0|0:10.19:-0:31:-0.81:-16|1;-14|13;-4|2;-2|10:-16|1;-14|10;-4|2;-2|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5083 chr21 33173823 GANGSTR_442192 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33173823;END=33173834;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5084 chr21 33174731 GANGSTR_442193 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33174731;END=33174742;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5085 chr21 33178655 GANGSTR_442194 ACAACAACAACAACAACAACAACAACAACAACAACAACAACA ACGACAACAACAACAACAACAACAACA . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=33178655;END=33178696;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-15;DP=55;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-15:1:0.5:55:0:2:0:31.97|23.03:0|0:244.33:-0.61:47:-0.64:-15|14;-12|1;-3|1;0|10:-15|14;-12|1;-3|1;0|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5086 chr21 33186533 GANGSTR_442196 TTTATTTATTTATTTATTTATTTA TTTATTTATTTATTTATTTATTTATTTA . . INFRAME_PGEOM=0.97;INFRAME_UP=0.04;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33186533;END=33186556;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:60:0:0:0:32.15|27.85:0|0:9.54:-0.41:34:-0.14:0|22;4|11:0|19;4|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5087 chr21 33192147 GANGSTR_442197 AGGCAGGCAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33192147;END=33192158;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5088 chr21 33192754 GANGSTR_442198 GAAAAAGAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33192754;END=33192765;PERIOD=6;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|32:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5089 chr21 33196413 GANGSTR_442199 ATTTTTATTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33196413;END=33196424;PERIOD=6;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:3:26.00|26.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5090 chr21 33197212 GANGSTR_442200 AAAGGAAAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33197212;END=33197221;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5091 chr21 33198634 GANGSTR_442201 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33198634;END=33198649;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5092 chr21 33207464 GANGSTR_442202 ATTAATTAATTAATTAATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33207464;END=33207487;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:28.00|35.00:0|0:.:0:.:0:0|38:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5093 chr21 33208321 GANGSTR_442203 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33208321;END=33208332;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5094 chr21 33223124 GANGSTR_442205 CACTCCACTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33223124;END=33223133;PERIOD=5;NSKIP=0;NFILT=0;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:36:0:0:0:18.00|18.00:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5095 chr21 33223917 GANGSTR_442206 TAGAGATAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33223917;END=33223928;PERIOD=6;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5096 chr21 33225578 GANGSTR_442207 ATAGATAGATAGATAGATAGATAGATAG ATAGATAGATAGATAGATAGATAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=33225578;END=33225605;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:39:0:0:0:17.42|21.58:0|0:8.55:0:.:0:-4|19:-4|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5097 chr21 33228504 GANGSTR_442209 ATACTATACTATACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33228504;END=33228518;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5098 chr21 33228648 GANGSTR_442210 TATTTATTTATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=33228648;END=33228671;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|23:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5099 chr21 33230127 GANGSTR_442211 ATTTATTTATTTATTTATTTATTTATTTATTT ATTTATTTATTTATTTATTTATTTATTT,ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=33230127;END=33230158;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4,12;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|12:1:0.5:67:0:0:0:37.62|29.38:0|0:30.48:-0.59:38:-0.29:-26|3;-7|1;-4|19;12|7:-4|19;12|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5100 chr21 33233570 GANGSTR_442212 CAGAAATGCCAGAAATGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33233570;END=33233587;PERIOD=9;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5101 chr21 33235136 GANGSTR_442213 AATAAATAAATA AATAATTA . . INFRAME_PGEOM=0.98;INFRAME_UP=0.04;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33235136;END=33235147;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=85;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:85:0:0:0:49.95|35.05:0|0:180.15:-0.92:81:-0.09:-4|29;0|28:-4|29;0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5102 chr21 33240136 GANGSTR_442214 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.04;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33240136;END=33240171;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=55;DSNP=0;DSTUTTER=3;DFLANKINDEL=3;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:55:0:3:3:25.84|29.16:0|0:25.09:-0:33:0:-6|2;-4|15;-2|1;0|13:-6|2;-4|12;-2|1;0|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5103 chr21 33242374 GANGSTR_442215 GGAAGGAAGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33242374;END=33242385;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5104 chr21 33242656 GANGSTR_442216 TTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33242656;END=33242663;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5105 chr21 33249543 GANGSTR_442218 GTGTGTGTGTGTGTGT GGGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33249543;END=33249558;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:59:0:0:0:23.37|35.63:0|0:41.5:-0.9:52:-0.24:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5106 chr21 33261132 GANGSTR_442220 TATATATATATA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33261132;END=33261143;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:1:0:27.00|27.00:0|0:.:0:.:0:-2|1;0|38:-2|1;0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5107 chr21 33263689 GANGSTR_442221 CAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33263689;END=33263704;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5108 chr21 33268885 GANGSTR_442222 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33268885;END=33268900;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5109 chr21 33269584 GANGSTR_442223 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33269584;END=33269595;PERIOD=3;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:1:1:36.50|36.50:0|0:.:0:.:0:0|56;1|1:-3|1;0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5110 chr21 33272759 GANGSTR_442224 ACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.75;INFRAME_UP=0.03;INFRAME_DOWN=0.13;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33272759;END=33272790;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,2;DP=68;DSNP=0;DSTUTTER=5;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|2:1:0.5:68:0:5:2:32.34|35.66:0|0:14.63:-0.18:48:0:-6|1;-4|2;-2|19;-1|1;0|2;2|19:-6|1;-4|2;-2|16;0|1;2|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5111 chr21 33275139 GANGSTR_442225 ATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33275139;END=33275146;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5112 chr21 33278706 GANGSTR_442226 CTTCCTTCCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33278706;END=33278717;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5113 chr21 33279488 GANGSTR_442227 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33279488;END=33279499;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5114 chr21 33295088 GANGSTR_442229 TATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33295088;END=33295095;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|58:0|57:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5115 chr21 33296044 GANGSTR_442230 TCCCTCCCTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33296044;END=33296055;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5116 chr21 33304235 GANGSTR_442231 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33304235;END=33304246;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|36:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5117 chr21 33304498 GANGSTR_442232 ACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33304498;END=33304511;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|42:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5118 chr21 33304760 GANGSTR_442233 GGAGGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33304760;END=33304769;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5119 chr21 33320908 GANGSTR_442235 GGAGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33320908;END=33320915;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5120 chr21 33327091 GANGSTR_442236 TTTTCTTTTC TTTTCATTTC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33327091;END=33327100;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:67:0:0:1:33.50|33.50:0|0:15.42:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5121 chr21 33330598 GANGSTR_442237 CTTTCTTTCTTTCTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33330598;END=33330621;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5122 chr21 33332438 GANGSTR_442238 CATTCATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33332438;END=33332453;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5123 chr21 33332594 GANGSTR_442239 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33332594;END=33332605;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5124 chr21 33334569 GANGSTR_442240 ATTAGCATTAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33334569;END=33334580;PERIOD=6;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|42:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5125 chr21 33345445 GANGSTR_442241 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33345445;END=33345456;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5126 chr21 33348618 GANGSTR_442242 TTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33348618;END=33348632;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5127 chr21 33350009 GANGSTR_442243 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33350009;END=33350018;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5128 chr21 33352385 GANGSTR_442244 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33352385;END=33352396;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5129 chr21 33354921 GANGSTR_442245 ATTAATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33354921;END=33354932;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:1:24.00|24.00:0|0:.:0:.:0:-57|1;0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5130 chr21 33362555 GANGSTR_442246 GAGAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33362555;END=33362568;PERIOD=2;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5131 chr21 33362831 GANGSTR_442247 TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=33362831;END=33362870;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|10:0|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5132 chr21 33368766 GANGSTR_442248 AGATGAGATGAGATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33368766;END=33368780;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5133 chr21 33372137 GANGSTR_442249 TTGTTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33372137;END=33372154;PERIOD=3;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:0:38.50|38.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5134 chr21 33373967 GANGSTR_442250 TGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33373967;END=33373986;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|40:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5135 chr21 33378361 GANGSTR_442251 CCTCTCCTCTCCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33378361;END=33378375;PERIOD=5;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:1:21.00|21.00:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5136 chr21 33378866 GANGSTR_442252 AGTTTAGTTTAGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33378866;END=33378880;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5137 chr21 33380551 GANGSTR_442253 AAAACAAAACAAAACAAAAC AAAACAAAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33380551;END=33380570;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-10;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-10|-10:1:1:51:0:0:0:25.50|25.50:0|0:9.88:0:.:0:-10|32:-10|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5138 chr21 33385319 GANGSTR_442254 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33385319;END=33385328;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5139 chr21 33388051 GANGSTR_442255 TCCTTCCTTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33388051;END=33388062;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.00|24.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5140 chr21 33388979 GANGSTR_442256 AGAGAGAGAGAGAGAGAGAG . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33388979;END=33388998;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:2:0:28.00|28.00:0|0:.:0:.:0:-2|2;0|37:-2|2;0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5141 chr21 33390710 GANGSTR_442257 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33390710;END=33390721;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5142 chr21 33400345 GANGSTR_442258 AAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33400345;END=33400359;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5143 chr21 33404212 GANGSTR_442259 TGCATGCATGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33404212;END=33404223;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5144 chr21 33419276 GANGSTR_442260 TTGTTTTGTTTTGTTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33419276;END=33419295;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5145 chr21 33433922 GANGSTR_442261 TGAGTATGAGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33433922;END=33433933;PERIOD=6;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|52:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5146 chr21 33434032 GANGSTR_442262 TTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33434032;END=33434039;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5147 chr21 33436914 GANGSTR_442263 GAGGAGGAGGAGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33436914;END=33436928;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5148 chr21 33444875 GANGSTR_442264 GATGGATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33444875;END=33444882;PERIOD=4;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:0:19.50|19.50:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5149 chr21 33450690 GANGSTR_442265 TATTTATTTATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33450690;END=33450713;PERIOD=4;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:1:0:38.00|38.00:0|0:.:0:.:0:0|34;16|1:0|33;16|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5150 chr21 33456438 GANGSTR_442266 TTTCTTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33456438;END=33456447;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5151 chr21 33461882 GANGSTR_442267 AAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33461882;END=33461891;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5152 chr21 33464501 GANGSTR_442268 GGAGAGGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33464501;END=33464510;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5153 chr21 33472085 GANGSTR_442269 TTGTTATTGTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33472085;END=33472096;PERIOD=6;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|38:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5154 chr21 33474791 GANGSTR_442270 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33474791;END=33474802;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5155 chr21 33477440 GANGSTR_442271 CACACACACACA . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33477440;END=33477451;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:2:0:29.50|29.50:0|0:.:0:.:0:-2|2;0|44:-2|2;0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5156 chr21 33483598 GANGSTR_442272 AAATAAAATAAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33483598;END=33483612;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5157 chr21 33489724 GANGSTR_442273 TTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33489724;END=33489733;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5158 chr21 33490668 GANGSTR_442274 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33490668;END=33490679;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:1:26.50|26.50:0|0:.:0:.:0:0|41:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5159 chr21 33491464 GANGSTR_442275 CCACCACCACCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33491464;END=33491475;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|43:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5160 chr21 33493868 GANGSTR_442276 TGAGACTGAGAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33493868;END=33493879;PERIOD=6;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|34:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5161 chr21 33496963 GANGSTR_442277 AAGACAAGACAAGAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33496963;END=33496977;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5162 chr21 33497032 GANGSTR_442278 AGAAAGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33497032;END=33497047;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5163 chr21 33501473 GANGSTR_442279 GATGGATGGATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33501473;END=33501484;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5164 chr21 33505301 GANGSTR_442280 TTTCTTTTCTTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33505301;END=33505315;PERIOD=5;NSKIP=0;NFILT=0;DP=84;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:84:0:0:0:42.00|42.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5165 chr21 33505772 GANGSTR_442281 AAACAAACAAACAAACAAACAAACAAAC AAACAAACAAACAAACAAACAAACAAACAGAC . . INFRAME_PGEOM=0.96;INFRAME_UP=0.25;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=33505772;END=33505799;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=77;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:77:0:1:0:43.22|33.78:0|0:52.53:-0.69:50:0:0|16;4|6:0|12;4|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5166 chr21 33513265 GANGSTR_442283 TTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33513265;END=33513279;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5167 chr21 33516977 GANGSTR_442284 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33516977;END=33516988;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5168 chr21 33523745 GANGSTR_442285 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33523745;END=33523764;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5169 chr21 33524444 GANGSTR_442286 ATATAATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=33524444;END=33524453;PERIOD=5;NSKIP=0;NFILT=0;DP=28;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:28:0:0:1:14.00|14.00:0|0:.:0:.:0:0|20:0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5170 chr21 33525950 GANGSTR_442287 GGAAGGAAGGAAGGAAGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33525950;END=33525969;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5171 chr21 33529846 GANGSTR_442288 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33529846;END=33529857;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:4:24.50|24.50:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5172 chr21 33532296 GANGSTR_442289 GAAGGAAGGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33532296;END=33532307;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:24.01|20.99:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5173 chr21 33533789 GANGSTR_442290 TTTGTTTGTTTGTTTGTTTGTTTG TTTGTTTGTTTGTTTGTTTGTTTGTTTG . . INFRAME_PGEOM=0.94;INFRAME_UP=0.09;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=33533789;END=33533812;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:44:0:0:0:19.63|24.37:0|0:3.18:-0.49:26:0:0|10;4|14:0|9;4|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5174 chr21 33538895 GANGSTR_442292 AATTAATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33538895;END=33538910;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5175 chr21 33540851 GANGSTR_442293 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33540851;END=33540862;PERIOD=3;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|55:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5176 chr21 33541987 GANGSTR_442294 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33541987;END=33541998;PERIOD=2;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|44:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5177 chr21 33542166 GANGSTR_442295 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33542166;END=33542177;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|39:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5178 chr21 33548138 GANGSTR_442296 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33548138;END=33548147;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5179 chr21 33551244 GANGSTR_442297 CTTCAGCTGCTTCAGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33551244;END=33551261;PERIOD=9;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|27:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5180 chr21 33552124 GANGSTR_442298 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33552124;END=33552135;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5181 chr21 33553917 GANGSTR_442299 CTGCTGCTGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33553917;END=33553928;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5182 chr21 33567362 GANGSTR_442300 AAATAAAATAAAATAAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33567362;END=33567381;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5183 chr21 33568672 GANGSTR_442301 TCTTAGGTCTTAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33568672;END=33568685;PERIOD=7;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5184 chr21 33570513 GANGSTR_442302 GGGAAGGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33570513;END=33570522;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5185 chr21 33570628 GANGSTR_442303 TAAAATTAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33570628;END=33570639;PERIOD=6;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|41:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5186 chr21 33571231 GANGSTR_442304 AAAGAAAGAAAGAAAG AAAAAAAAAAAAAAAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33571231;END=33571246;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:55:0:0:2:45.01|9.99:0|0:2.46:-6.44:49:-2.7:0|28:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5187 chr21 33574126 GANGSTR_442305 TAAATAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33574126;END=33574141;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:1:35.00|35.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5188 chr21 33577198 GANGSTR_442306 CAAACAAACAAA . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33577198;END=33577209;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:1:0:25.00|25.00:0|0:.:0:.:0:-4|1;0|35:-4|1;0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5189 chr21 33580442 GANGSTR_442307 TCTCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33580442;END=33580457;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5190 chr21 33582534 GANGSTR_442308 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33582534;END=33582545;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5191 chr21 33587111 GANGSTR_442309 CACTCACTCACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=33587111;END=33587122;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:-1|1;0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5192 chr21 33599343 GANGSTR_442310 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33599343;END=33599352;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:1:1:28.50|28.50:0|0:.:0:.:0:-7|1;0|36:-5|1;0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5193 chr21 33600396 GANGSTR_442311 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33600396;END=33600407;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:1:33.50|33.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5194 chr21 33604223 GANGSTR_442312 CAAAACAAAACAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33604223;END=33604247;PERIOD=5;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5195 chr21 33604448 GANGSTR_442313 TATCTCTATCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33604448;END=33604459;PERIOD=6;NSKIP=0;NFILT=0;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:78:0:0:0:39.00|39.00:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5196 chr21 33607313 GANGSTR_442314 TCCTCTCCTCTCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33607313;END=33607327;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5197 chr21 33608694 GANGSTR_442315 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33608694;END=33608705;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5198 chr21 33611583 GANGSTR_442316 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33611583;END=33611594;PERIOD=3;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|35:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5199 chr21 33612312 GANGSTR_442317 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33612312;END=33612323;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5200 chr21 33616284 GANGSTR_442319 AAGAAGAAGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33616284;END=33616295;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5201 chr21 33617048 GANGSTR_442320 AACCAACCAACCAACCAACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33617048;END=33617067;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5202 chr21 33619223 GANGSTR_442321 TTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33619223;END=33619237;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5203 chr21 33632078 GANGSTR_442322 CACCCCACCCCACCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33632078;END=33632092;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5204 chr21 33637737 GANGSTR_442323 CAGCCAGCCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33637737;END=33637748;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:1:24.00|24.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5205 chr21 33639279 GANGSTR_442324 ACACACACACACACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33639279;END=33639304;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5206 chr21 33645150 GANGSTR_442325 GCTAGAGCTAGAGCTAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33645150;END=33645167;PERIOD=6;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:1:33.50|33.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5207 chr21 33645418 GANGSTR_442326 CTTTTTTTCTTTTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.99;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.12;START=33645418;END=33645433;PERIOD=8;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=1;DFLANKINDEL=7;AN=2;REFAC=2;HRUN=7;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:1:7:31.50|31.50:0|0:.:0:.:0:-1|7;0|27:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5208 chr21 33655483 GANGSTR_442328 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33655483;END=33655494;PERIOD=2;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:1:22.00|22.00:0|0:.:0:.:0:0|34:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5209 chr21 33659555 GANGSTR_442329 CACACACACACACACACACACACACACACACACA CACACACACACACACACACACACACACACACACACA . . INFRAME_PGEOM=0.98;INFRAME_UP=0.03;INFRAME_DOWN=0.24;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33659555;END=33659588;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=71;DSNP=0;DSTUTTER=5;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:71:0:5:0:35.50|35.50:0|0:8.29:0:.:0:0|11;2|28:0|3;2|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5210 chr21 33660541 GANGSTR_442330 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33660541;END=33660552;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5211 chr21 33663541 GANGSTR_442333 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33663541;END=33663552;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5212 chr21 33668289 GANGSTR_442334 AAAACAAAACAAAACAAAAC AAAACAAAACAAAAC . . INFRAME_PGEOM=0.96;INFRAME_UP=0.03;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.02;START=33668289;END=33668308;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-5;DP=82;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-5:1:0.5:82:0:0:0:37.32|44.68:0|0:21.2:-0.5:63:-0.1:-5|31;0|21:-5|32;0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5213 chr21 33671649 GANGSTR_442335 TTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33671649;END=33671658;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5214 chr21 33672532 GANGSTR_442336 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33672532;END=33672543;PERIOD=2;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5215 chr21 33673364 GANGSTR_442337 ATATCATATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33673364;END=33673373;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5216 chr21 33677839 GANGSTR_442338 GAGGAGGAGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33677839;END=33677850;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5217 chr21 33680185 GANGSTR_442339 AACAAACAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33680185;END=33680196;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5218 chr21 33682654 GANGSTR_442340 GGGGAGGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.98;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=33682654;END=33682663;PERIOD=5;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:4:22.50|22.50:0|0:.:0:.:0:-1|1;0|28;1|1:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5219 chr21 33688061 GANGSTR_442341 GAGGAGGAGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33688061;END=33688072;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5220 chr21 33694908 GANGSTR_442342 CAGTCAGTCAGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33694908;END=33694919;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5221 chr21 33700170 GANGSTR_442343 ATGCATGCATGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33700170;END=33700181;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5222 chr21 33706810 GANGSTR_442344 GGTGGTGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33706810;END=33706818;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|46:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5223 chr21 33708685 GANGSTR_442346 ACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33708685;END=33708698;PERIOD=2;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|53:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5224 chr21 33711297 GANGSTR_442347 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33711297;END=33711312;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:1:34.00|34.00:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5225 chr21 33712922 GANGSTR_442348 CAAAAACAAAAACAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33712922;END=33712939;PERIOD=6;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5226 chr21 33715413 GANGSTR_442349 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33715413;END=33715424;PERIOD=2;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|49:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5227 chr21 33727919 GANGSTR_442351 CTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33727919;END=33727930;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5228 chr21 33728700 GANGSTR_442352 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33728700;END=33728711;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5229 chr21 33730338 GANGSTR_442353 CAAAAACAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33730338;END=33730349;PERIOD=6;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5230 chr21 33737232 GANGSTR_442354 TGGCCCTGGCCCTGGCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33737232;END=33737249;PERIOD=6;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|30:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5231 chr21 33737383 GANGSTR_442355 GAGGAGGAGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33737383;END=33737394;PERIOD=3;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5232 chr21 33740062 GANGSTR_442356 ATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33740062;END=33740071;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5233 chr21 33745548 GANGSTR_442357 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33745548;END=33745563;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5234 chr21 33748270 GANGSTR_442358 AAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33748270;END=33748289;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5235 chr21 33748384 GANGSTR_442359 TTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33748384;END=33748393;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5236 chr21 33749121 GANGSTR_442360 TTTGTTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33749121;END=33749144;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:1:0:29.00|29.00:0|0:.:0:.:0:-4|1;0|33:-4|1;0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5237 chr21 33759728 GANGSTR_442361 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33759728;END=33759742;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5238 chr21 33760688 GANGSTR_442362 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33760688;END=33760699;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5239 chr21 33768566 GANGSTR_442364 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33768566;END=33768577;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5240 chr21 33770470 GANGSTR_442365 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33770470;END=33770481;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5241 chr21 33775942 GANGSTR_442366 AGGAAGGAAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33775942;END=33775953;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5242 chr21 33776734 GANGSTR_442367 GATGTGTGTGTGTGTGTGTGTGTGTGTGTGTG GGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=1;INFRAME_UP=0.06;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=33776736;END=33776765;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=22;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:22:0:2:1:11.00|11.00:0|0:4.45:0:.:0:-2|2;0|11:-2|1;0|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5243 chr21 33780278 GANGSTR_442368 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=33780278;END=33780292;PERIOD=5;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:1:22.50|22.50:0|0:.:0:.:0:0|22:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5244 chr21 33780806 GANGSTR_442369 AAGAAGAAGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33780806;END=33780817;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5245 chr21 33788515 GANGSTR_442370 TGTGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33788515;END=33788536;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5246 chr21 33789021 GANGSTR_442371 GGAAGGGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33789021;END=33789030;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5247 chr21 33789267 GANGSTR_442372 TGTTGTTGTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33789267;END=33789278;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|50:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5248 chr21 33794976 GANGSTR_442373 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33794976;END=33794987;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|45:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5249 chr21 33801321 GANGSTR_442374 TTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33801321;END=33801340;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|35:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5250 chr21 33801667 GANGSTR_442375 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33801667;END=33801678;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5251 chr21 33806605 GANGSTR_442376 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33806605;END=33806616;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:1:0:35.00|35.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5252 chr21 33808353 GANGSTR_442377 TTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.99;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.11;START=33808353;END=33808372;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:4:27.00|27.00:0|0:.:0:.:0:-1|3;0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5253 chr21 33809467 GANGSTR_442378 CAAAACAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33809467;END=33809486;PERIOD=5;NSKIP=0;NFILT=0;DP=78;DSNP=0;DSTUTTER=2;DFLANKINDEL=8;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:78:0:2:8:39.00|39.00:0|0:.:0:.:0:-12|1;-11|1;0|40;11|4:0|40;10|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5254 chr21 33812623 GANGSTR_442379 AAGAAAAGAAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33812623;END=33812637;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5255 chr21 33816362 GANGSTR_442380 ACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACCACACACACAC . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33816362;END=33816399;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=64;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-3|-3:1:1:64:0:2:1:32.00|32.00:0|0:14.76:0:.:0:-5|2;-3|35:-5|2;-3|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5256 chr21 33827624 GANGSTR_442381 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33827624;END=33827639;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:-8|1;0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5257 chr21 33828203 GANGSTR_442382 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33828203;END=33828218;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5258 chr21 33829218 GANGSTR_442383 GAGAGAGAGAGAGA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33829218;END=33829231;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:2:1:26.50|26.50:0|0:.:0:.:0:-2|1;0|37:-2|2;0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5259 chr21 33836035 GANGSTR_442384 AAACAAAACAAAACA AAACAAAACAAAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.02;START=33836035;END=33836049;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-1|-1:1:1:64:0:0:0:32.00|32.00:0|0:15.94:0:.:0:-1|44;0|1:-1|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5260 chr21 33838896 GANGSTR_442385 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33838896;END=33838911;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5261 chr21 33839466 GANGSTR_442386 AACTAAACTAAACTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33839466;END=33839480;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5262 chr21 33840214 GANGSTR_442387 ATATATATATATATAT ATATATATATATATATAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=33840214;END=33840229;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=30;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:30:0:0:0:15.00|15.00:0|0:6.52:0:.:0:-9|1;-7|2;-3|1;2|19:2|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5263 chr21 33844464 GANGSTR_442389 ATTTATTTATTTATTTATTT ATTAATTTATTTATTTATTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33844464;END=33844483;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:74:0:0:0:37.00|37.00:0|0:11.06:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5264 chr21 33845998 GANGSTR_442390 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33845998;END=33846009;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5265 chr21 33847650 GANGSTR_442391 ATCATCATCATCATCATCATCATCATC ATCATCATCATCATCATCATCATCATCATC . . INFRAME_PGEOM=0.94;INFRAME_UP=0.03;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33847650;END=33847676;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=3;DP=64;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:3|3:1:1:64:0:2:0:32.00|32.00:0|0:7.72:0:.:0:-15|1;-6|1;0|2;3|30:0|1;3|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5266 chr21 33848567 GANGSTR_442393 TTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33848567;END=33848586;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:1:33.00|33.00:0|0:.:0:.:0:0|35;1|1:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5267 chr21 33848953 GANGSTR_442394 AATAATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33848953;END=33848970;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|35:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5268 chr21 33850526 GANGSTR_442395 TATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33850526;END=33850539;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:1:0:26.50|26.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5269 chr21 33851808 GANGSTR_442396 AACAACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33851808;END=33851825;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5270 chr21 33856273 GANGSTR_442397 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33856273;END=33856308;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-8;DP=59;DSNP=0;DSTUTTER=2;DFLANKINDEL=2;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-8|-8:1:1:59:0:2:2:29.50|29.50:0|0:10.96:0:.:0:-10|3;-8|34:-10|2;-8|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5271 chr21 33864061 GANGSTR_442398 GGAGGGAGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33864061;END=33864072;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:1:20.50|20.50:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5272 chr21 33865276 GANGSTR_442399 TGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33865276;END=33865291;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5273 chr21 33866081 GANGSTR_442400 TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTA TTTATTTATTTATTTATTTATTTATTTATTTATTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=33866081;END=33866124;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-8;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-8|-8:1:1:44:0:0:0:22.00|22.00:0|0:6.86:0:.:0:-8|20:-8|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5274 chr21 33866544 GANGSTR_442401 TTCATTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33866544;END=33866559;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5275 chr21 33873036 GANGSTR_442402 TGTGTGTGTGTGTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33873036;END=33873049;PERIOD=2;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:1:0:23.50|23.50:0|0:.:0:.:0:-2|1;0|32:-2|1;0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5276 chr21 33875105 GANGSTR_442403 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33875105;END=33875116;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5277 chr21 33888619 GANGSTR_442405 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33888619;END=33888630;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5278 chr21 33889597 GANGSTR_442406 CCTCCCTCCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33889597;END=33889608;PERIOD=4;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:0:19.50|19.50:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5279 chr21 33891080 GANGSTR_442407 TATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33891080;END=33891095;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5280 chr21 33894068 GANGSTR_442408 ATTTAAATTTAAATTTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33894068;END=33894085;PERIOD=6;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|26:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5281 chr21 33894611 GANGSTR_442409 CTGCTGCTGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33894611;END=33894622;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5282 chr21 33895560 GANGSTR_442410 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33895560;END=33895571;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5283 chr21 33901811 GANGSTR_442411 AGACAGACAGAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33901811;END=33901822;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5284 chr21 33902985 GANGSTR_442412 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33902985;END=33902996;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|41:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5285 chr21 33907024 GANGSTR_442414 AAGGAAGGAAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=33907024;END=33907035;PERIOD=4;NSKIP=0;NFILT=0;DP=26;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:26:0:0:0:13.00|13.00:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5286 chr21 33907319 GANGSTR_442415 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33907319;END=33907330;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:1:20.50|20.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5287 chr21 33908516 GANGSTR_442416 TTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33908516;END=33908523;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.50|27.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5288 chr21 33910198 GANGSTR_442417 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33910198;END=33910209;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5289 chr21 33910764 GANGSTR_442418 ATTTATTTATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33910764;END=33910787;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:2:33.50|33.50:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5290 chr21 33912551 GANGSTR_442419 ATAAATAAATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33912551;END=33912570;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:1:33.00|33.00:0|0:.:0:.:0:0|42:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5291 chr21 33927387 GANGSTR_442420 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33927387;END=33927401;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5292 chr21 33939289 GANGSTR_442421 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33939289;END=33939300;PERIOD=3;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|30:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5293 chr21 33940975 GANGSTR_442423 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33940975;END=33940986;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5294 chr21 33943985 GANGSTR_442424 ATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.98;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=33943985;END=33944000;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:2:33.50|33.50:0|0:.:0:.:0:-1|1;0|44;1|1:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5295 chr21 33944536 GANGSTR_442425 TTTGTTTTGTTTTGTTTTGT TTTTGTTTTGTTTTGTTTTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.96;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33944536;END=33944555;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=1;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|1:1:0.5:75:0:0:0:29.51|45.49:0|0:54.91:-1.25:62:-0.22:0|22;1|24:0|20;1|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5296 chr21 33952787 GANGSTR_442426 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=1;INFRAME_UP=0.12;INFRAME_DOWN=0.24;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=33952787;END=33952826;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=50;DSNP=0;DSTUTTER=4;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:50:0:4:1:22.61|27.39:0|0:14.76:-0.94:20:-0.2:-2|2;-1|1;0|6;2|3;4|6:-2|1;0|3;2|3;4|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5297 chr21 33958441 GANGSTR_442428 ATGAATGAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33958441;END=33958452;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5298 chr21 33974259 GANGSTR_442430 CATCATCATCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33974259;END=33974270;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5299 chr21 33974689 GANGSTR_442431 AGAGCAGAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33974689;END=33974698;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5300 chr21 33975107 GANGSTR_442432 TCCTCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33975107;END=33975115;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5301 chr21 33988142 GANGSTR_442433 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=33988142;END=33988153;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5302 chr21 33989539 GANGSTR_442434 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=33989539;END=33989550;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5303 chr21 33997664 GANGSTR_442435 TTTATTTATTTATTTA TTATTTATTTATTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.97;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.04;START=33997664;END=33997679;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:71:0:0:0:31.00|40.00:0|0:112.94:-0.47:69:-0.2:-1|28;0|16:-1|28;0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5304 chr21 34004517 GANGSTR_442436 ATGATGATGATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34004517;END=34004528;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5305 chr21 34010372 GANGSTR_442437 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34010372;END=34010383;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5306 chr21 34011270 GANGSTR_442438 GGTGGTGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=34011270;END=34011278;PERIOD=3;NSKIP=0;NFILT=0;DP=31;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:31:0:0:0:15.50|15.50:0|0:.:0:.:0:0|23:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5307 chr21 34017714 GANGSTR_442439 CTGGCTGGCTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34017714;END=34017725;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5308 chr21 34018015 GANGSTR_442440 GGCGGCGGCGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=34018015;END=34018026;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5309 chr21 34022057 GANGSTR_442441 TTTGTTTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34022057;END=34022076;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5310 chr21 34022396 GANGSTR_442442 AAGAAGAAGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34022396;END=34022407;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5311 chr21 34027701 GANGSTR_442443 TGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34027701;END=34027715;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:1:32.00|32.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5312 chr21 34028580 GANGSTR_442444 AAAACAAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34028580;END=34028604;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:1:36.00|36.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5313 chr21 34031893 GANGSTR_442445 CTGTTCTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34031893;END=34031902;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5314 chr21 34038774 GANGSTR_442446 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34038774;END=34038785;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5315 chr21 34042744 GANGSTR_442447 CAACACAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34042744;END=34042753;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5316 chr21 34046744 GANGSTR_442448 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34046744;END=34046755;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5317 chr21 34046890 GANGSTR_442449 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34046890;END=34046901;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:28.51|33.49:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5318 chr21 34047700 GANGSTR_442450 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34047700;END=34047714;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5319 chr21 34048950 GANGSTR_442451 ATGCATGCATGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34048950;END=34048961;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:1:32.00|32.00:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5320 chr21 34057924 GANGSTR_442452 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34057924;END=34057933;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5321 chr21 34062508 GANGSTR_442453 TAGATTAGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34062508;END=34062517;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5322 chr21 34067944 GANGSTR_442454 TATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=34067944;END=34067987;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:0|15:0|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5323 chr21 34068955 GANGSTR_442455 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34068955;END=34068966;PERIOD=2;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:1:23.50|23.50:0|0:.:0:.:0:0|40:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5324 chr21 34072982 GANGSTR_442456 AACAAACAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34072982;END=34072993;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5325 chr21 34084278 GANGSTR_442457 TTAAATTTAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34084278;END=34084289;PERIOD=6;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5326 chr21 34087481 GANGSTR_442458 TAAAAATAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34087481;END=34087492;PERIOD=6;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|33:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5327 chr21 34088746 GANGSTR_442459 TGGTTTGGTTTGGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34088746;END=34088760;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5328 chr21 34089128 GANGSTR_442460 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34089128;END=34089139;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5329 chr21 34092551 GANGSTR_442461 CAAAAACAAAAACAAAAACAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34092551;END=34092574;PERIOD=6;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|27:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5330 chr21 34099240 GANGSTR_442462 AAGCAAAGCAAAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34099240;END=34099254;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5331 chr21 34102684 GANGSTR_442463 GAGAGAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34102684;END=34102699;PERIOD=2;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|26:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5332 chr21 34103170 GANGSTR_442464 GTTTTTTGTTTTTTGTTTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34103170;END=34103190;PERIOD=7;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=6;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|33:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5333 chr21 34110278 GANGSTR_442465 ATATATATATATAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34110278;END=34110291;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:-2|1;0|42:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5334 chr21 34110416 GANGSTR_442466 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34110416;END=34110427;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5335 chr21 34110981 GANGSTR_442467 CCCCGCCCCG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34110981;END=34110990;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5336 chr21 34124943 GANGSTR_442468 CTATCTATCTATCTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34124943;END=34124958;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5337 chr21 34144522 GANGSTR_442469 GGAGGAGGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34144522;END=34144533;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:2:31.00|31.00:0|0:.:0:.:0:0|52:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5338 chr21 34146048 GANGSTR_442470 TTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34146048;END=34146067;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5339 chr21 34146236 GANGSTR_442471 TTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=34146236;END=34146255;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:1:24.50|24.50:0|0:.:0:.:0:0|24:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5340 chr21 34147313 GANGSTR_442472 GTGAGTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34147313;END=34147320;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|53:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5341 chr21 34147499 GANGSTR_442473 TTGTTTTGTTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34147499;END=34147513;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5342 chr21 34153539 GANGSTR_442475 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34153539;END=34153550;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|41:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5343 chr21 34157997 GANGSTR_442476 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34157997;END=34158012;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|37:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5344 chr21 34160002 GANGSTR_442477 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34160002;END=34160013;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:30.57|32.43:0|0:.:0:.:0:0|48:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5345 chr21 34163187 GANGSTR_442478 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34163187;END=34163198;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5346 chr21 34165215 GANGSTR_442479 TTATTATTATTATT TTATTATTATTATTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.12;OUTFRAME_DOWN=0.03;START=34165215;END=34165226;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=1;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:1|1:1:1:52:0:0:3:26.00|26.00:0|0:13.96:0:.:0:0|12;1|30;2|1:1|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5347 chr21 34167727 GANGSTR_442480 ATGAGATGAGATGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34167727;END=34167741;PERIOD=5;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5348 chr21 34168784 GANGSTR_442481 AGAGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34168784;END=34168797;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5349 chr21 34169988 GANGSTR_442482 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34169988;END=34169999;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5350 chr21 34170321 GANGSTR_442483 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34170321;END=34170336;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5351 chr21 34170980 GANGSTR_442484 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34170980;END=34170991;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5352 chr21 34176039 GANGSTR_442485 TACTGTGATACTGTGATACTGTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34176039;END=34176062;PERIOD=8;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|32:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5353 chr21 34190646 GANGSTR_442486 CTTCCCTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34190646;END=34190655;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5354 chr21 34192650 GANGSTR_442487 TCTCTCTCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34192650;END=34192669;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:1:0:27.50|27.50:0|0:.:0:.:0:0|38:-2|1;0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5355 chr21 34196565 GANGSTR_442489 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34196565;END=34196576;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5356 chr21 34206979 GANGSTR_442490 GGAAGGGAAGGGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34206979;END=34206993;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5357 chr21 34208446 GANGSTR_442491 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34208446;END=34208457;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5358 chr21 34211059 GANGSTR_442492 TTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34211059;END=34211066;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5359 chr21 34212514 GANGSTR_442493 ATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34212514;END=34212522;PERIOD=3;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5360 chr21 34212702 GANGSTR_442494 CAGGGCCAGGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34212702;END=34212713;PERIOD=6;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5361 chr21 34212899 GANGSTR_442495 GGTTGGTTGGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34212899;END=34212910;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:22.45|33.55:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5362 chr21 34220092 GANGSTR_442496 TATATATATATATA TATATATATATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34220092;END=34220105;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=49;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:49:0:2:0:24.50|24.50:0|0:11.85:0:.:0:-4|2;-2|38:-4|2;-2|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5363 chr21 34220371 GANGSTR_442497 GCTTGCTTGCTTGCTTGCTT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34220371;END=34220390;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:1:0:33.00|33.00:0|0:.:0:.:0:-4|1;0|39:-4|1;0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5364 chr21 34224279 GANGSTR_442498 CAACAACAACAACAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34224279;END=34224302;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5365 chr21 34229316 GANGSTR_442499 ACAGACAGACAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34229316;END=34229327;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5366 chr21 34229929 GANGSTR_442500 AACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34229929;END=34229943;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5367 chr21 34236840 GANGSTR_442501 AATAAATAAATAAATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=34236840;END=34236863;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|22:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5368 chr21 34237056 GANGSTR_442502 CCTTCCTTCCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34237056;END=34237067;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5369 chr21 34239946 GANGSTR_442503 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34239946;END=34239960;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5370 chr21 34241799 GANGSTR_442504 TCCCCATCCCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34241799;END=34241810;PERIOD=6;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5371 chr21 34241867 GANGSTR_442505 TATCTATCTATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34241867;END=34241878;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5372 chr21 34241955 GANGSTR_442506 TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA,TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.08;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=34241955;END=34241994;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4,16;DP=80;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:4|16:1:0.5:80:0:1:0:34.57|45.43:0|0:13.76:-0.97:39:-0.75:-22|14;-18|6;0|11;4|9:0|1;4|12;16|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5373 chr21 34253013 GANGSTR_442507 AAACAAAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34253013;END=34253032;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5374 chr21 34259530 GANGSTR_442508 CAGCCAGCCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34259530;END=34259541;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5375 chr21 34260017 GANGSTR_442509 ACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.99;INFRAME_UP=0.06;INFRAME_DOWN=0.14;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34260017;END=34260056;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4,-2;DP=81;DSNP=0;DSTUTTER=4;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 2|1:-2|-4:1:0.5:81:0:4:1:41.11|39.89:0|0:9.1:-0.06:42:0:-8|1;-6|4;-4|15;-2|15:-6|1;-4|16;-2|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5376 chr21 34269853 GANGSTR_442510 AATTAAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34269853;END=34269862;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5377 chr21 34270253 GANGSTR_442511 CTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34270253;END=34270264;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5378 chr21 34270392 GANGSTR_442512 CCTCCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34270392;END=34270399;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5379 chr21 34270871 GANGSTR_442513 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34270871;END=34270882;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5380 chr21 34273846 GANGSTR_442514 GAGGGAGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=34273846;END=34273857;PERIOD=4;NSKIP=0;NFILT=0;DP=33;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:33:0:0:0:16.50|16.50:0|0:.:0:.:0:0|17:0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5381 chr21 34273986 GANGSTR_442515 AAGAAAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34273986;END=34273997;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5382 chr21 34276878 GANGSTR_442516 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34276878;END=34276889;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|53:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5383 chr21 34280086 GANGSTR_442517 AGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34280086;END=34280093;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5384 chr21 34282118 GANGSTR_442520 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34282118;END=34282129;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5385 chr21 34285428 GANGSTR_442521 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34285428;END=34285442;PERIOD=5;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5386 chr21 34294064 GANGSTR_442522 TCTTCTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34294064;END=34294073;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5387 chr21 34299951 GANGSTR_442523 CAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34299951;END=34299966;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|55:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5388 chr21 34303908 GANGSTR_442524 AACAACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34303908;END=34303925;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5389 chr21 34308088 GANGSTR_442525 AACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=34308088;END=34308102;PERIOD=3;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|21:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5390 chr21 34308634 GANGSTR_442526 CGTATATATATATATA CATATATATATATATA,CATATATATATATATATATA . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34308636;END=34308649;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0,4;DP=66;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:0|4:1:0.5:66:0:2:0:33.60|32.40:0|0:64.84:0:42:0:-11|3;-9|2;0|23;2|1;4|12:0|18;2|1;4|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5391 chr21 34311912 GANGSTR_442527 CACACACACACACACACACA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34311912;END=34311931;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:1:0:30.50|30.50:0|0:.:0:.:0:-2|1;0|37:-2|1;0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5392 chr21 34315568 GANGSTR_442528 TTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTC TTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTC,TTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=34315568;END=34315607;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=5,30;DP=88;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:5|30:1:0.5:88:0:0:0:44.99|43.01:0|0:26.32:-0.06:38:-0.13:-45|3;-20|6;-10|9;5|19;30|2:5|19;30|2:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5393 chr21 34316944 GANGSTR_442529 ACAACACAACACAACACAACACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34316944;END=34316968;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5394 chr21 34318632 GANGSTR_442530 GTGAGTGAGTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34318632;END=34318643;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5395 chr21 34321931 GANGSTR_442531 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34321931;END=34321942;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:1:35.50|35.50:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5396 chr21 34327249 GANGSTR_442532 AATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34327249;END=34327258;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5397 chr21 34335566 GANGSTR_442533 ATAAATAAATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34335566;END=34335585;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:1:37.00|37.00:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5398 chr21 34339635 GANGSTR_442534 GTTGTTGTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34339635;END=34339646;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5399 chr21 34349417 GANGSTR_442535 CCCTCCCTCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34349417;END=34349428;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5400 chr21 34350672 GANGSTR_442536 CCCCTCCCCTCCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34350672;END=34350686;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5401 chr21 34351375 GANGSTR_442537 CCTGCCTGCCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34351375;END=34351386;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5402 chr21 34351915 GANGSTR_442538 GGAGGGAGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34351915;END=34351926;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:1:22.00|22.00:0|0:.:0:.:0:0|34:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5403 chr21 34355023 GANGSTR_442540 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34355023;END=34355034;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5404 chr21 34356739 GANGSTR_442541 AATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34356739;END=34356746;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5405 chr21 34358559 GANGSTR_442542 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.74;INFRAME_UP=0.04;INFRAME_DOWN=0.24;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=34358559;END=34358596;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=56;DSNP=0;DSTUTTER=6;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:56:0:6:2:28.72|27.28:0|0:9.6:-0.15:29:0:-20|1;-4|3;-2|4;0|10;2|2;4|8;6|1:-4|1;-2|3;0|9;2|1;4|8;6|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5406 chr21 34358858 GANGSTR_442543 GAGAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34358858;END=34358871;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:1:25.50|25.50:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5407 chr21 34365178 GANGSTR_442544 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34365178;END=34365189;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5408 chr21 34367368 GANGSTR_442545 AAAGAAAGAAAG AAAGAAACAAAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34367368;END=34367379;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:51:0:0:1:26.47|24.53:0|0:79.32:-0.05:46:-0.85:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5409 chr21 34368394 GANGSTR_442546 AGTATCCAGTATCC AGTATCCAATATCC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34368394;END=34368407;PERIOD=7;NSKIP=0;NFILT=0;BPDIFFS=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|0:0|0:1:0.5:53:0:0:0:25.00|28.00:0|0:98.41:-0.11:51:-0.39:0|38:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5410 chr21 34370757 GANGSTR_442547 TTGGTTGGTTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34370757;END=34370768;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:27.00|24.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5411 chr21 34372731 GANGSTR_442548 AATGGCTGCTGCTGCT AGTGGCTGCTGCTGCT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34372735;END=34372746;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:65:0:0:0:30.97|34.03:0|0:90.05:-0.11:53:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5412 chr21 34374887 GANGSTR_442549 TTTATTTATTTA TTTATTTATTTATTTA . . INFRAME_PGEOM=0.98;INFRAME_UP=0.06;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.7;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=34374887;END=34374898;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:58:0:0:0:25.97|32.03:0|0:7.93:-0.51:35:-1.39:-17|1;0|15;2|1;4|17:0|14;4|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5413 chr21 34375675 GANGSTR_442550 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34375675;END=34375686;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5414 chr21 34376678 GANGSTR_442551 TTCTCTTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34376678;END=34376687;PERIOD=5;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:23.54|21.46:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5415 chr21 34390380 GANGSTR_442552 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34390380;END=34390391;PERIOD=2;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:1:32.00|32.00:0|0:.:0:.:0:-20|1;0|50:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5416 chr21 34390931 GANGSTR_442553 TTGTTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34390931;END=34390948;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|30:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5417 chr21 34391981 GANGSTR_442554 GGCGGGCGGGCG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34391981;END=34391992;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:1:24.00|24.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5418 chr21 34393603 GANGSTR_442555 AGACAGACAGAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34393603;END=34393614;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5419 chr21 34395115 GANGSTR_442556 TTTGCTTTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34395115;END=34395124;PERIOD=5;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5420 chr21 34398635 GANGSTR_442557 GTGCGTGTGCGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34398635;END=34398646;PERIOD=6;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|32:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5421 chr21 34408073 GANGSTR_442558 CAAGGCAAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34408073;END=34408082;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5422 chr21 34413379 GANGSTR_442559 ACTCACTCACTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34413379;END=34413390;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:31.96|25.04:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5423 chr21 34413928 GANGSTR_442560 AGGGAAGGAGGGAAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34413928;END=34413943;PERIOD=8;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.86|29.14:0|0:.:0:.:0:0|29:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5424 chr21 34418498 GANGSTR_442561 GAGAGAGAGAGA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34418498;END=34418509;PERIOD=2;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:1:0:40.00|35.00:0|0:.:0:.:0:-2|1;0|56:-2|1;0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5425 chr21 34419365 GANGSTR_442562 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34419365;END=34419384;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|33:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5426 chr21 34421363 GANGSTR_442563 TCATTCATTCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34421363;END=34421374;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5427 chr21 34428855 GANGSTR_442564 GAGGCCGAGGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34428855;END=34428866;PERIOD=6;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|37:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5428 chr21 34429011 GANGSTR_442565 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34429011;END=34429022;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5429 chr21 34429447 GANGSTR_442566 CTCTCTCTCTCTCTCTCTCT . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34429447;END=34429466;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:2:0:25.00|25.00:0|0:.:0:.:0:-2|2;0|36:-2|2;0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5430 chr21 34436047 GANGSTR_442568 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34436047;END=34436058;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5431 chr21 34438255 GANGSTR_442569 CACACACACACACACACACACACACACACACA CACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACA . . INFRAME_PGEOM=0.93;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34438255;END=34438286;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,2;DP=73;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|2:1:0.5:73:0:3:0:36.96|36.04:0|0:21.77:-0:41:0:-4|2;-2|19;-1|2;0|3;2|14;4|1:-4|1;-2|19;2|12;4|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5432 chr21 34439407 GANGSTR_442570 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34439407;END=34439418;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|45:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5433 chr21 34440578 GANGSTR_442571 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34440578;END=34440589;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|46:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5434 chr21 34441347 GANGSTR_442572 TGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34441347;END=34441361;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5435 chr21 34442854 GANGSTR_442573 AGCAGCAGCAGCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34442854;END=34442868;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5436 chr21 34444922 GANGSTR_442574 GTGGGTGGGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34444922;END=34444933;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5437 chr21 34453277 GANGSTR_442575 TTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34453277;END=34453286;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5438 chr21 34455383 GANGSTR_442577 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34455383;END=34455394;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5439 chr21 34458796 GANGSTR_442578 AAGGAAGGAAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34458796;END=34458807;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5440 chr21 34463409 GANGSTR_442579 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34463409;END=34463420;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5441 chr21 34463750 GANGSTR_442580 TTTGTTTGTTTGTTTGTTTGTTTGTTTG TTTGTTTGTTTGTTTGTTTGTTTG . . INFRAME_PGEOM=0.98;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34463750;END=34463777;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:62:0:0:0:30.18|31.82:0|0:10.59:-0.06:34:0:-4|16;0|16:-4|16;0|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5442 chr21 34467009 GANGSTR_442581 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.94;OUTFRAME_UP=0.08;OUTFRAME_DOWN=0.03;START=34467009;END=34467023;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:3:22.01|23.99:0|0:.:0:.:0:0|30;1|2:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5443 chr21 34467168 GANGSTR_442582 ATTATATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=34467168;END=34467177;PERIOD=5;NSKIP=0;NFILT=0;DP=32;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:32:0:0:0:16.00|16.00:0|0:.:0:.:0:0|16:0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5444 chr21 34467929 GANGSTR_442583 TGTTGTTGTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34467929;END=34467940;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5445 chr21 34468742 GANGSTR_442584 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=34468742;END=34468753;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:2:28.50|28.50:0|0:.:0:.:0:-1|1;0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5446 chr21 34473267 GANGSTR_442585 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34473267;END=34473278;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|37:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5447 chr21 34479626 GANGSTR_442587 TGTTTTGTTTTGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34479626;END=34479650;PERIOD=5;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:2:38.00|38.00:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5448 chr21 34481307 GANGSTR_442588 TTTCTTTTCTTTTCTTTTCTTTTCT TTTCTTTTCTTTTCT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34481307;END=34481331;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-10;DP=52;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-10|-10:1:1:52:0:1:1:26.00|26.00:0|0:10.77:0:.:0:-21|1;-10|34:-10|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5449 chr21 34485421 GANGSTR_442589 TAAGCTAAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34485421;END=34485430;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:3:25.50|25.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5450 chr21 34487128 GANGSTR_442590 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34487128;END=34487139;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:1:23.50|23.50:0|0:.:0:.:0:0|35;11|1:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5451 chr21 34489358 GANGSTR_442591 GTTGTTGTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34489358;END=34489369;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5452 chr21 34493840 GANGSTR_442592 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34493840;END=34493851;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5453 chr21 34500788 GANGSTR_442593 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34500788;END=34500799;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5454 chr21 34504298 GANGSTR_442594 AAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34504298;END=34504312;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5455 chr21 34505171 GANGSTR_442595 TTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.02;START=34505171;END=34505178;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:1:26.50|26.50:0|0:.:0:.:0:0|37;1|1:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5456 chr21 34508403 GANGSTR_442596 AGCTGAGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34508403;END=34508412;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5457 chr21 34508615 GANGSTR_442597 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34508615;END=34508630;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5458 chr21 34510078 GANGSTR_442598 ATAATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34510078;END=34510092;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5459 chr21 34511799 GANGSTR_442599 GGAGGGAGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34511799;END=34511810;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5460 chr21 34513135 GANGSTR_442600 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34513135;END=34513146;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:2:29.50|29.50:0|0:.:0:.:0:0|30;7|1:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5461 chr21 34513366 GANGSTR_442601 AAGAAAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34513366;END=34513377;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5462 chr21 34513681 GANGSTR_442602 TATTTATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34513681;END=34513700;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5463 chr21 34516497 GANGSTR_442603 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34516497;END=34516508;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|41:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5464 chr21 34522628 GANGSTR_442604 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34522628;END=34522639;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5465 chr21 34524683 GANGSTR_442605 TCACTCACTCAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34524683;END=34524694;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5466 chr21 34524797 GANGSTR_442606 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34524797;END=34524808;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:1:32.00|32.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5467 chr21 34527423 GANGSTR_442607 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=34527423;END=34527434;PERIOD=4;NSKIP=0;NFILT=0;DP=28;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:28:0:0:0:14.00|14.00:0|0:.:0:.:0:0|20:0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5468 chr21 34528329 GANGSTR_442608 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34528329;END=34528344;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5469 chr21 34528514 GANGSTR_442609 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34528514;END=34528529;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5470 chr21 34531219 GANGSTR_442610 GTGAGTGAGTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34531219;END=34531230;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5471 chr21 34532690 GANGSTR_442611 ACACACACACAC ACACACACACACACACAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34532690;END=34532701;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6;DP=63;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|6:1:0.5:63:0:1:0:34.06|28.94:0|0:87.49:-0.23:55:-0.23:-25|4;0|31;4|1;6|19:0|29;4|1;6|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5472 chr21 34533160 GANGSTR_442612 TGGTGGTGGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34533160;END=34533171;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5473 chr21 34536170 GANGSTR_442613 GTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTTTGTGT . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34536170;END=34536193;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=56;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:56:0:1:0:28.00|28.00:0|0:13.22:0:.:0:-2|1;0|34:-2|1;0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5474 chr21 34539298 GANGSTR_442614 CCTCCCTCCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34539298;END=34539309;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5475 chr21 34539397 GANGSTR_442615 CCTCCCTCCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34539397;END=34539408;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5476 chr21 34540191 GANGSTR_442616 TATATCTATATCTATATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34540191;END=34540208;PERIOD=6;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:33.00|38.00:0|0:.:0:.:0:0|45:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5477 chr21 34544715 GANGSTR_442617 TATTTATATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34544715;END=34544726;PERIOD=6;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|35:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5478 chr21 34546416 GANGSTR_442618 AGCAAGCAAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34546416;END=34546427;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5479 chr21 34550736 GANGSTR_442619 ACAAACAAACAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34550736;END=34550751;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5480 chr21 34551792 GANGSTR_442620 CCCACCCACCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34551792;END=34551803;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5481 chr21 34554569 GANGSTR_442621 TTGTTTTGTTTTGTTTTGTTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=34554569;END=34554593;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|22:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5482 chr21 34556292 GANGSTR_442622 ACTCACTCACTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34556292;END=34556303;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:1:25.50|25.50:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5483 chr21 34556363 GANGSTR_442623 CCACCACCACCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34556363;END=34556374;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5484 chr21 34556896 GANGSTR_442624 TAAAAATAAAAATAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34556896;END=34556913;PERIOD=6;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|33:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5485 chr21 34566029 GANGSTR_442625 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34566029;END=34566040;PERIOD=4;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:1:38.50|38.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5486 chr21 34572676 GANGSTR_442627 ATATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34572676;END=34572691;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|41:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5487 chr21 34576140 GANGSTR_442628 GGATAGGATAGGATAGGATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34576140;END=34576159;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:1:34.00|34.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5488 chr21 34587796 GANGSTR_442630 GTTGTTGTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34587796;END=34587807;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5489 chr21 34592323 GANGSTR_442631 CAAAAACAAAAACAAAAACAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34592323;END=34592346;PERIOD=6;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|25:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5490 chr21 34601093 GANGSTR_442634 TCCTCCTCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34601093;END=34601104;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:1:34.00|34.00:0|0:.:0:.:0:0|51:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5491 chr21 34601902 GANGSTR_442635 TTCATTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34601902;END=34601917;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5492 chr21 34602640 GANGSTR_442636 CTCCTCCTCCTCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34602640;END=34602654;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5493 chr21 34602808 GANGSTR_442637 CCCACCCCACCCCAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=34602808;END=34602822;PERIOD=5;NSKIP=0;NFILT=0;DP=35;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:0:1:19.43|15.57:0|0:.:0:.:0:0|21:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5494 chr21 34604036 GANGSTR_442638 GTTTGGTTTGGTTTGGTTTGGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34604036;END=34604060;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5495 chr21 34606489 GANGSTR_442639 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.87;INFRAME_UP=0.05;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=34606489;END=34606528;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=57;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:57:0:2:0:29.19|27.81:0|0:16.54:-0:25:0:-2|1;0|12;2|1;4|11:0|10;4|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5496 chr21 34607885 GANGSTR_442640 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34607885;END=34607896;PERIOD=2;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:33.49|30.51:0|0:.:0:.:0:0|47:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5497 chr21 34609378 GANGSTR_442641 AATGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT AATGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,AGTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.44;INFRAME_UP=0.12;INFRAME_DOWN=0.16;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=34609384;END=34609415;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4,16;DP=57;DSNP=0;DSTUTTER=7;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:4|16:1:0.5:57:0:7:1:40.07|16.93:0|0:7.24:-3.57:42:-0.63:-14|2;0|1;1|2;2|1;4|12;9|1;11|1;14|1;16|6:2|1;4|10;14|1;16|5:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5498 chr21 34610800 GANGSTR_442642 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34610800;END=34610811;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5499 chr21 34618065 GANGSTR_442643 GCTGCTGCTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34618065;END=34618076;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:32.00|36.00:0|0:.:0:.:0:0|45:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5500 chr21 34622843 GANGSTR_442645 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34622843;END=34622854;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5501 chr21 34623866 GANGSTR_442646 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34623866;END=34623877;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5502 chr21 34624387 GANGSTR_442647 ATCTATCTATCTATCTATCTATCTATCTATCTATCT ATCTATCTATCTATCTATCTATCTATCTATCT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.08;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34624387;END=34624422;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=86;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:86:0:0:0:48.24|37.76:0|0:5.63:-1.18:43:0:-4|13;0|18:-4|13;0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5503 chr21 34626486 GANGSTR_442648 AGTAAAGTAAAGTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34626486;END=34626500;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.50|32.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5504 chr21 34630656 GANGSTR_442649 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34630656;END=34630667;PERIOD=3;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|34:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5505 chr21 34633044 GANGSTR_442650 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34633044;END=34633058;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5506 chr21 34633643 GANGSTR_442651 TGTTTTGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34633643;END=34633662;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5507 chr21 34633772 GANGSTR_442652 TTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34633772;END=34633781;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5508 chr21 34651363 GANGSTR_442655 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34651363;END=34651374;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5509 chr21 34658072 GANGSTR_442656 ATGGATGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34658072;END=34658079;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:1:22.00|22.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5510 chr21 34659193 GANGSTR_442657 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34659193;END=34659204;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|55:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5511 chr21 34659647 GANGSTR_442658 GTTTGTTTGTTT GTTTGTTTGTTTGTTT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.04;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34659647;END=34659658;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:53:0:0:0:27.84|25.16:0|0:23.22:-0.12:45:-0.26:-8|2;-2|3;0|19;4|11:0|16;4|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5512 chr21 34660683 GANGSTR_442659 CGCGCACACACACACACACACACACACAG CGCACACACACACACACACACACAC,CACGCACACACACACACACACACACACAG . . INFRAME_PGEOM=0.96;INFRAME_UP=0.04;INFRAME_DOWN=0.13;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34660687;END=34660710;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4,0;DP=50;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|0:1:0.5:50:0:2:0:22.03|27.97:0|0:70.07:-0.32:50:-0.4:-6|3;-4|11;-2|1;0|12:-6|2;-4|13;0|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5513 chr21 34662616 GANGSTR_442660 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34662616;END=34662627;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|34:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5514 chr21 34669179 GANGSTR_442661 GGAGGAGGAGGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34669179;END=34669193;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5515 chr21 34670913 GANGSTR_442662 CATCTCTAAATAAATAAATAAA CTTCTCTAAATAAATAAATAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34670919;END=34670934;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:57:0:0:0:32.00|25.00:0|0:60.67:-0.46:41:-0.29:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5516 chr21 34676480 GANGSTR_442663 ACAGCACAGCACAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34676480;END=34676494;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5517 chr21 34677421 GANGSTR_442664 TGTTGTTGTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34677421;END=34677432;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:28.00|25.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5518 chr21 34688400 GANGSTR_442665 TCATCATCATCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34688400;END=34688411;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5519 chr21 34689957 GANGSTR_442666 AACAACAACAACAACAAC ATCAACAACAACAACAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34689957;END=34689974;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:58:0:0:0:29.03|28.97:0|0:78.03:0:52:-0.24:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5520 chr21 34692115 GANGSTR_442667 ACATACATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34692115;END=34692126;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5521 chr21 34700433 GANGSTR_442668 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34700433;END=34700444;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:1:33.00|33.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5522 chr21 34702564 GANGSTR_442669 GTTGTTGTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34702564;END=34702575;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5523 chr21 34702849 GANGSTR_442670 ACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34702849;END=34702862;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5524 chr21 34703952 GANGSTR_442671 TGCTGCTGCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34703952;END=34703963;PERIOD=3;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:1:20.50|20.50:0|0:.:0:.:0:0|31:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5525 chr21 34707445 GANGSTR_442672 TCTATCTATCTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34707445;END=34707456;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5526 chr21 34710083 GANGSTR_442673 TGTATATGTATATGTATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34710083;END=34710100;PERIOD=6;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|33:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5527 chr21 34711827 GANGSTR_442674 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34711827;END=34711838;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5528 chr21 34724074 GANGSTR_442677 TGGTGGTGGTGGTGGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34724074;END=34724091;PERIOD=3;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5529 chr21 34724914 GANGSTR_442678 AAACAAAACAAAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34724914;END=34724938;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5530 chr21 34731148 GANGSTR_442679 TATATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34731148;END=34731163;PERIOD=2;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:1:1:22.50|22.50:0|0:.:0:.:0:0|29:0|22;4|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5531 chr21 34731422 GANGSTR_442680 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34731422;END=34731433;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5532 chr21 34739442 GANGSTR_442681 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34739442;END=34739456;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5533 chr21 34740563 GANGSTR_442682 TGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.98;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34740563;END=34740582;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:2:0:30.00|30.00:0|0:.:0:.:0:-2|1;0|42;2|1:-2|1;0|40;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5534 chr21 34747528 GANGSTR_442683 CACACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34747528;END=34747541;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|36:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5535 chr21 34749009 GANGSTR_442684 AATAATAATAATAATAATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=34749009;END=34749038;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|24:0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5536 chr21 34750366 GANGSTR_442685 TTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34750366;END=34750373;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.00|26.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5537 chr21 34750853 GANGSTR_442686 GCAGAGCAGAGCAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34750853;END=34750867;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5538 chr21 34752707 GANGSTR_442687 AAACAAAACAAAACA AAACAGAACAAAACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34752707;END=34752721;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:59:0:0:0:31.95|27.05:0|0:74.14:-0.25:47:-0.41:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5539 chr21 34754845 GANGSTR_442688 CCACCACCACCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34754845;END=34754856;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5540 chr21 34759369 GANGSTR_442689 TTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34759369;END=34759388;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:34.93|36.07:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5541 chr21 34761081 GANGSTR_442690 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34761081;END=34761092;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:1:1:30.00|30.00:0|0:.:0:.:0:-23|1;0|41:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5542 chr21 34763122 GANGSTR_442691 TCCTGTCCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34763122;END=34763131;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5543 chr21 34763968 GANGSTR_442692 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34763968;END=34763983;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5544 chr21 34764615 GANGSTR_442693 CTCCCTCCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34764615;END=34764626;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5545 chr21 34767328 GANGSTR_442695 TTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34767328;END=34767335;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5546 chr21 34767684 GANGSTR_442696 ACACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34767684;END=34767699;PERIOD=2;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5547 chr21 34773406 GANGSTR_442698 AGACAGACAGAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34773406;END=34773417;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5548 chr21 34776739 GANGSTR_442700 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34776739;END=34776750;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5549 chr21 34778694 GANGSTR_442701 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34778694;END=34778708;PERIOD=5;NSKIP=0;NFILT=0;DP=81;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:81:0:0:0:40.50|40.50:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5550 chr21 34779902 GANGSTR_442702 GTTGTTGTTGTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34779902;END=34779916;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5551 chr21 34780430 GANGSTR_442703 ATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34780430;END=34780439;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5552 chr21 34780506 GANGSTR_442704 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=34780506;END=34780521;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:-1|1;0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5553 chr21 34784215 GANGSTR_442705 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34784215;END=34784226;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5554 chr21 34784858 GANGSTR_442706 ATTTATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34784858;END=34784877;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5555 chr21 34788171 GANGSTR_442707 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34788171;END=34788182;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|47:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5556 chr21 34790324 GANGSTR_442708 TTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34790324;END=34790343;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5557 chr21 34791767 GANGSTR_442709 TGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34791767;END=34791788;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=72;DSNP=0;DSTUTTER=2;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:72:0:2:2:37.56|34.44:0|0:19.2:-0.37:57:0:-5|1;-2|2;0|30;2|24:-2|2;0|26;2|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5558 chr21 34792215 GANGSTR_442710 GGAGGAGGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34792215;END=34792226;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|47:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5559 chr21 34794816 GANGSTR_442711 AGGAGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34794816;END=34794827;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|52:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5560 chr21 34795701 GANGSTR_442712 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34795701;END=34795712;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5561 chr21 34797048 GANGSTR_442713 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34797048;END=34797062;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5562 chr21 34798731 GANGSTR_442714 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34798731;END=34798742;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5563 chr21 34800421 GANGSTR_442715 GCAGAGCAGAGCAGAGCAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34800421;END=34800440;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5564 chr21 34802449 GANGSTR_442716 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34802449;END=34802460;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|54:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5565 chr21 34807141 GANGSTR_442717 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34807141;END=34807152;PERIOD=2;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|53:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5566 chr21 34807367 GANGSTR_442718 TCAGTCAGTCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34807367;END=34807378;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|53:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5567 chr21 34811692 GANGSTR_442719 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34811692;END=34811703;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5568 chr21 34813198 GANGSTR_442720 AATAAAATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34813198;END=34813212;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:32.50|28.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5569 chr21 34813935 GANGSTR_442721 TTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34813935;END=34813954;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|36:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5570 chr21 34820298 GANGSTR_442725 TTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34820298;END=34820305;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5571 chr21 34826607 GANGSTR_442726 ATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34826607;END=34826621;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5572 chr21 34836065 GANGSTR_442727 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34836065;END=34836076;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5573 chr21 34841756 GANGSTR_442728 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34841756;END=34841771;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5574 chr21 34842479 GANGSTR_442729 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34842479;END=34842490;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5575 chr21 34844691 GANGSTR_442730 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34844691;END=34844706;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5576 chr21 34846506 GANGSTR_442731 GTTGTTGTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34846506;END=34846517;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5577 chr21 34849691 GANGSTR_442732 ATAATATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34849691;END=34849700;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5578 chr21 34850125 GANGSTR_442733 TATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34850125;END=34850138;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|43:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5579 chr21 34851363 GANGSTR_442734 CAGCCCAGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34851363;END=34851372;PERIOD=5;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:0:19.50|19.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5580 chr21 34852041 GANGSTR_442735 GGCCGGGCCG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=34852041;END=34852050;PERIOD=5;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:0:19.50|19.50:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5581 chr21 34857310 GANGSTR_442736 TTGTTGTTGTTGTTGTTGTTG TTGTTGTTGTTGTTGTTGTTGTTG . . INFRAME_PGEOM=0.96;INFRAME_UP=0.06;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34857310;END=34857330;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=3;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|3:1:0.5:52:0:0:0:22.41|29.59:0|0:8.06:-0.76:35:0:0|11;3|21:0|10;3|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5582 chr21 34861336 GANGSTR_442737 TCTTCTTCTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34861336;END=34861347;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5583 chr21 34863076 GANGSTR_442739 ATAGATAGATAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34863076;END=34863087;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5584 chr21 34868766 GANGSTR_442740 CCCTCTCTCTCTCT CTCTCTCTCTCTCTCT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=34868768;END=34868779;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:44:0:0:0:26.01|17.99:0|0:68.62:-0.61:36:-0.52:0|28:0|14;2|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5585 chr21 34868902 GANGSTR_442741 TGCCAATGCCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34868902;END=34868913;PERIOD=6;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5586 chr21 34870428 GANGSTR_442742 AAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=34870428;END=34870447;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5587 chr21 34872044 GANGSTR_442743 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34872044;END=34872055;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5588 chr21 34873653 GANGSTR_442744 TTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34873653;END=34873667;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5589 chr21 34875491 GANGSTR_442745 TTATTTATTTATTTATTTATTTATTTATTTATTTAT TTATTTATTTATTTATTTATTTATTTAT,TTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=34875491;END=34875526;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-8,4;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-8|4:1:0.5:63:0:0:0:35.55|27.45:0|0:8.12:-0.73:28:-0.36:-8|16;-3|2;0|1;4|3:-8|16;4|2:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5590 chr21 34880138 GANGSTR_442746 CAAAAACAAAAACAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34880138;END=34880155;PERIOD=6;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|39:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5591 chr21 34886581 GANGSTR_442747 AAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34886581;END=34886588;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5592 chr21 34897529 GANGSTR_442748 ATAAATAAATAAATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.03;START=34897529;END=34897552;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:1:1:30.00|30.00:0|0:.:0:.:0:0|30;1|1:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5593 chr21 34897678 GANGSTR_442749 AAATAAATAAATACAT AAATAAATAAATACATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.99;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.11;START=34897678;END=34897689;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=1;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:1|1:1:1:53:0:0:0:26.50|26.50:0|0:11.74:0:.:0:0|3;1|29:1|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5594 chr21 34902610 GANGSTR_442750 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34902610;END=34902621;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5595 chr21 34902964 GANGSTR_442751 AACAAACAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34902964;END=34902975;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5596 chr21 34907977 GANGSTR_442752 TCAATCAATCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34907977;END=34907988;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5597 chr21 34911089 GANGSTR_442753 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34911089;END=34911103;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5598 chr21 34913449 GANGSTR_442754 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34913449;END=34913464;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5599 chr21 34916841 GANGSTR_442755 TCATTTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34916841;END=34916850;PERIOD=5;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5600 chr21 34931355 GANGSTR_442756 TGACTGACTGAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34931355;END=34931366;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5601 chr21 34933362 GANGSTR_442757 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34933362;END=34933373;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5602 chr21 34933928 GANGSTR_442758 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34933928;END=34933939;PERIOD=2;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|51:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5603 chr21 34938538 GANGSTR_442759 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34938538;END=34938549;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|45:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5604 chr21 34939195 GANGSTR_442760 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34939195;END=34939206;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|37:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5605 chr21 34945596 GANGSTR_442761 CTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34945596;END=34945607;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5606 chr21 34952546 GANGSTR_442763 ATGAATGAATGAATGAATGAATGAATGA ATGAATGAATGAATGAATGAATGA . . INFRAME_PGEOM=0.97;INFRAME_UP=0.09;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=34952546;END=34952573;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|0:-4|0:1:0.5:52:0:0:0:24.57|27.43:0|0:9.6:-0.06:36:-0.3:-4|7;0|12:-4|7;0|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5607 chr21 34968389 GANGSTR_442766 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34968389;END=34968400;PERIOD=2;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:1:34.00|34.00:0|0:.:0:.:0:0|45:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5608 chr21 34980773 GANGSTR_442767 AATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34980773;END=34980780;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5609 chr21 34981772 GANGSTR_442768 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34981772;END=34981783;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5610 chr21 34985017 GANGSTR_442769 GTGTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34985017;END=34985030;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|35;14|1:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5611 chr21 34988593 GANGSTR_442770 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=34988593;END=34988604;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5612 chr21 34993122 GANGSTR_442771 AAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=34993122;END=34993141;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:1:2:28.00|28.00:0|0:.:0:.:0:0|31:-5|1;0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5613 chr21 35001535 GANGSTR_442772 AACAACAACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35001535;END=35001555;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|42:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5614 chr21 35002022 GANGSTR_442773 TCTTTCTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35002022;END=35002033;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5615 chr21 35003887 GANGSTR_442774 AAATAAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35003887;END=35003896;PERIOD=5;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:1:36.50|36.50:0|0:.:0:.:0:-18|1;0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5616 chr21 35005313 GANGSTR_442775 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35005313;END=35005324;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5617 chr21 35006843 GANGSTR_442776 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.73;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=35006843;END=35006854;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:1:1:29.00|29.00:0|0:.:0:.:0:-2|1;0|44:-4|1;0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5618 chr21 35008544 GANGSTR_442777 AATAAATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35008544;END=35008559;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|41:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5619 chr21 35036740 GANGSTR_442778 ACTCACTCACTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35036740;END=35036751;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5620 chr21 35039107 GANGSTR_442779 TTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35039107;END=35039126;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5621 chr21 35042663 GANGSTR_442780 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35042663;END=35042677;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5622 chr21 35043592 GANGSTR_442781 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35043592;END=35043607;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5623 chr21 35044098 GANGSTR_442782 AAATAAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35044098;END=35044121;PERIOD=4;NSKIP=0;NFILT=0;DP=82;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:82:0:0:0:41.00|41.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5624 chr21 35051006 GANGSTR_442783 GTTGTTGTTGTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35051006;END=35051020;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|38:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5625 chr21 35054824 GANGSTR_442785 TTTCTTTTCTTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35054824;END=35054838;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5626 chr21 35058651 GANGSTR_442786 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35058651;END=35058662;PERIOD=2;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5627 chr21 35061163 GANGSTR_442787 GTGCAGTGGTGCAGTGGTGCAGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35061163;END=35061186;PERIOD=8;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|26:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5628 chr21 35065633 GANGSTR_442788 TTTTGTTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35065633;END=35065657;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:1:32.00|32.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5629 chr21 35066509 GANGSTR_442789 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35066509;END=35066520;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5630 chr21 35073257 GANGSTR_442790 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=1;INFRAME_UP=0.09;INFRAME_DOWN=0.19;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=35073257;END=35073294;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,4;DP=54;DSNP=0;DSTUTTER=4;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|4:1:0.5:54:0:4:0:28.11|25.89:0|0:10.15:0:26:-0.19:-5|1;-4|2;-2|8;0|2;2|3;4|7:-4|2;-2|11;2|2;4|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5631 chr21 35074948 GANGSTR_442791 TGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35074948;END=35074957;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:1:36.00|36.00:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5632 chr21 35075389 GANGSTR_442792 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.91;INFRAME_UP=0.07;INFRAME_DOWN=0.22;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35075389;END=35075418;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2,4;DP=33;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:2|4:0.91:0.46:33:0:0:1:14.91|18.09:0|0:1.03:-0:25:0:0|4;2|11;4|10:2|12;4|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5633 chr21 35079052 GANGSTR_442793 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35079052;END=35079067;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5634 chr21 35083958 GANGSTR_442794 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.07;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=35083958;END=35083995;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=68;DSNP=0;DSTUTTER=7;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:68:0:7:2:30.38|37.62:0|0:15.88:-0.22:32:0:-6|4;-4|11;-2|2;0|11:-6|5;-4|9;-2|2;0|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5635 chr21 35085178 GANGSTR_442795 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35085178;END=35085192;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5636 chr21 35086928 GANGSTR_442796 TATATCTATATCTATATC TATATCTATATC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35086928;END=35086945;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-6|-6:1:1:54:0:0:0:27.00|27.00:0|0:11.19:0:.:0:-6|32:-6|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5637 chr21 35090033 GANGSTR_442797 TTTGTGTGTGTGTGTG TGTGTGTGTGTGTGTG,TTTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.97;INFRAME_UP=0.05;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35090035;END=35090048;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0,2;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:0|2:1:0.5:53:0:0:0:24.94|28.06:0|0:31.61:-0.12:45:-0.42:-16|3;0|17;2|21:0|17;2|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5638 chr21 35090959 GANGSTR_442798 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35090959;END=35090970;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|51:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5639 chr21 35091751 GANGSTR_442799 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35091751;END=35091766;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5640 chr21 35091867 GANGSTR_442800 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35091867;END=35091878;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|47:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5641 chr21 35098292 GANGSTR_442801 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35098292;END=35098303;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5642 chr21 35098814 GANGSTR_442802 TTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35098814;END=35098821;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5643 chr21 35109873 GANGSTR_442803 TTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35109873;END=35109892;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5644 chr21 35110494 GANGSTR_442804 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35110494;END=35110508;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5645 chr21 35113221 GANGSTR_442805 TAGATAGATAGATAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35113221;END=35113236;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5646 chr21 35115772 GANGSTR_442806 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35115772;END=35115783;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5647 chr21 35121008 GANGSTR_442807 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35121008;END=35121019;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:2:25.39|28.61:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5648 chr21 35121169 GANGSTR_442808 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35121169;END=35121180;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:1:24.00|24.00:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5649 chr21 35127059 GANGSTR_442809 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35127059;END=35127070;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5650 chr21 35132421 GANGSTR_442810 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35132421;END=35132435;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:3:28.00|28.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5651 chr21 35134970 GANGSTR_442812 ATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35134970;END=35134984;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5652 chr21 35138823 GANGSTR_442813 CATGCATGCATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35138823;END=35138834;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|51:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5653 chr21 35140577 GANGSTR_442814 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35140577;END=35140591;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5654 chr21 35141337 GANGSTR_442815 TGGTTGGTTGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35141337;END=35141348;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5655 chr21 35145956 GANGSTR_442816 AAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35145956;END=35145963;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5656 chr21 35152136 GANGSTR_442817 TTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35152136;END=35152145;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5657 chr21 35156615 GANGSTR_442818 ACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.94;INFRAME_UP=0.04;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=35156615;END=35156658;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-8;DP=65;DSNP=0;DSTUTTER=4;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-8:1:0.5:65:0:4:2:30.95|34.05:0|0:56.08:-0.06:36:0:-10|1;-9|1;-8|17;-2|1;0|9:-10|1;-8|15;-2|1;0|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5658 chr21 35156810 GANGSTR_442819 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35156810;END=35156821;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5659 chr21 35157872 GANGSTR_442820 TTCCTTCCTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35157872;END=35157883;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5660 chr21 35161037 GANGSTR_442821 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35161037;END=35161052;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5661 chr21 35161247 GANGSTR_442822 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35161247;END=35161258;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:27.00|31.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5662 chr21 35162572 GANGSTR_442823 TTTAATATTTAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=35162572;END=35162585;PERIOD=7;NSKIP=0;NFILT=0;DP=31;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:31:0:0:0:15.50|15.50:0|0:.:0:.:0:0|20:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5663 chr21 35164334 GANGSTR_442824 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35164334;END=35164345;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5664 chr21 35165198 GANGSTR_442825 CCTTCCTTCCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35165198;END=35165209;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5665 chr21 35169394 GANGSTR_442826 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=35169394;END=35169405;PERIOD=4;NSKIP=0;NFILT=0;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:78:0:0:0:39.00|39.00:0|0:.:0:.:0:0|62:0|62:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5666 chr21 35186059 GANGSTR_442828 TTTATTTATTTATTTA TTTATTTATTTATTTATTTA . . INFRAME_PGEOM=0.98;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.68;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=35186059;END=35186074;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:66:0:0:0:30.56|35.44:0|0:13.64:-0.25:47:-0.83:-4|1;0|24;2|2;4|20:0|21;4|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5667 chr21 35188329 GANGSTR_442829 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35188329;END=35188340;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5668 chr21 35192296 GANGSTR_442830 AAAATAAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35192296;END=35192315;PERIOD=5;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:1:37.00|37.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5669 chr21 35193473 GANGSTR_442831 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35193473;END=35193484;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:25.04|33.96:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5670 chr21 35194525 GANGSTR_442832 GTTTTTGTGTTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35194525;END=35194540;PERIOD=8;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|35:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5671 chr21 35199706 GANGSTR_442833 AAAATAAAATAAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35199706;END=35199730;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5672 chr21 35202476 GANGSTR_442834 GTGTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35202476;END=35202489;PERIOD=2;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|31:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5673 chr21 35202834 GANGSTR_442835 GGAGGGAGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35202834;END=35202845;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|41:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5674 chr21 35203209 GANGSTR_442836 GGGAGGGAGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35203209;END=35203220;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5675 chr21 35206220 GANGSTR_442837 ATTATTATTATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35206220;END=35206243;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:1:1:26.00|26.00:0|0:.:0:.:0:-3|1;0|26:-3|1;0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5676 chr21 35209663 GANGSTR_442838 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35209663;END=35209674;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5677 chr21 35213102 GANGSTR_442839 TGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35213102;END=35213116;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5678 chr21 35214800 GANGSTR_442840 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=35214800;END=35214833;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-10,-4;DP=53;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-10|-4:1:0.5:53:0:3:0:25.09|27.91:0|0:40.09:-0.13:35:-1.06:-14|1;-12|1;-10|12;-8|1;-4|16:-14|1;-12|1;-10|11;-8|1;-4|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5679 chr21 35218267 GANGSTR_442841 GCAGGCAGGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35218267;END=35218278;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5680 chr21 35226772 GANGSTR_442842 TCACTCACTCAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35226772;END=35226783;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5681 chr21 35233741 GANGSTR_442843 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35233741;END=35233752;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5682 chr21 35234587 GANGSTR_442845 AAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.03;START=35234587;END=35234596;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:1:25.50|25.50:0|0:.:0:.:0:0|32;1|1:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5683 chr21 35235620 GANGSTR_442846 TTCTTTTCTTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35235620;END=35235634;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5684 chr21 35235932 GANGSTR_442847 AAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35235932;END=35235946;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5685 chr21 35236562 GANGSTR_442848 TCCATCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35236562;END=35236569;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5686 chr21 35241680 GANGSTR_442849 ACTCACTCACTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35241680;END=35241691;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|56:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5687 chr21 35244822 GANGSTR_442850 ATTTTTATTTTTATTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35244822;END=35244839;PERIOD=6;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|37:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5688 chr21 35245243 GANGSTR_442851 AAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35245243;END=35245252;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5689 chr21 35247986 GANGSTR_442852 TATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35247986;END=35248001;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5690 chr21 35250130 GANGSTR_442853 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35250130;END=35250165;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-12;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-12|-12:1:1:62:0:0:1:31.00|31.00:0|0:12.08:0:.:0:-12|41:-12|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5691 chr21 35250763 GANGSTR_442854 TACATACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35250763;END=35250770;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5692 chr21 35253310 GANGSTR_442855 GGAGGGAGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35253310;END=35253321;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5693 chr21 35256514 GANGSTR_442856 TTGTTGTTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35256514;END=35256534;PERIOD=3;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:1:36.00|36.00:0|0:.:0:.:0:0|35:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5694 chr21 35262237 GANGSTR_442857 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35262237;END=35262248;PERIOD=4;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:0:0:40.00|40.00:0|0:.:0:.:0:0|53:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5695 chr21 35264244 GANGSTR_442858 TGATTTGATTTGATTTGATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35264244;END=35264263;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5696 chr21 35265062 GANGSTR_442859 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35265062;END=35265073;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5697 chr21 35272071 GANGSTR_442860 CAAAAACAAAAACAAAAACAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35272071;END=35272094;PERIOD=6;NSKIP=0;NFILT=0;DP=84;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:84:0:0:0:42.00|42.00:0|0:.:0:.:0:0|39:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5698 chr21 35281583 GANGSTR_442861 CTTTCTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=35281583;END=35281598;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:1:1:29.00|29.00:0|0:.:0:.:0:-1|1;0|40:-4|1;0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5699 chr21 35288494 GANGSTR_442862 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35288494;END=35288503;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5700 chr21 35291112 GANGSTR_442863 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35291112;END=35291127;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:18.50|30.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5701 chr21 35303381 GANGSTR_442864 AGGCAGGCAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35303381;END=35303392;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5702 chr21 35305037 GANGSTR_442865 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35305037;END=35305048;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5703 chr21 35306098 GANGSTR_442866 TTATTTTATTTTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35306098;END=35306117;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:25.48|44.52:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5704 chr21 35309045 GANGSTR_442867 CCTTCCTTCCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35309045;END=35309056;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5705 chr21 35312567 GANGSTR_442868 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35312567;END=35312581;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5706 chr21 35314929 GANGSTR_442869 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35314929;END=35314940;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5707 chr21 35321957 GANGSTR_442870 TCATGCTTCATGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35321957;END=35321970;PERIOD=7;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:1:33.50|33.50:0|0:.:0:.:0:-14|1;0|46:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5708 chr21 35323089 GANGSTR_442871 TATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=35323089;END=35323102;PERIOD=2;NSKIP=0;NFILT=0;DP=15;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:15:0:0:0:7.50|7.50:0|0:.:0:.:0:0|11:0|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5709 chr21 35325060 GANGSTR_442872 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.06;START=35325060;END=35325071;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:3:24.50|24.50:0|0:.:0:.:0:-1|1;0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5710 chr21 35329437 GANGSTR_442874 ACTATACTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35329437;END=35329446;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5711 chr21 35331966 GANGSTR_442875 ACACACACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35331966;END=35331983;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:1:0:30.00|30.00:0|0:.:0:.:0:-2|1;0|43:-2|1;0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5712 chr21 35332378 GANGSTR_442876 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35332378;END=35332389;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|36:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5713 chr21 35341133 GANGSTR_442878 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35341133;END=35341144;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5714 chr21 35343812 GANGSTR_442879 ACACACACACACACACACACACACACAC ACACACACACACACACACACAC,ACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=1;INFRAME_UP=0.07;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=35343812;END=35343839;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6,2;DP=51;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-6|2:1:0.5:51:0:2:1:25.06|25.94:0|0:20.03:0:35:0:-15|1;-8|1;-6|16;-5|1;2|14;4|1:-8|1;-6|12;2|11;4|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5715 chr21 35347125 GANGSTR_442880 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.72;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.12;START=35347125;END=35347136;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=1;DFLANKINDEL=6;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:1:6:24.50|24.50:0|0:.:0:.:0:-2|2;-1|2;0|31:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5716 chr21 35348639 GANGSTR_442881 CACTCACTCACTCACTCACT CACTCACTCACT,CACTCACTCACTCACT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.06;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35348639;END=35348658;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-8,-4;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-8|-4:1:0.5:50:0:0:0:22.14|27.86:0|0:10.8:-0.47:39:0:-8|15;-4|20:-8|13;-4|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5717 chr21 35351200 GANGSTR_442882 ATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35351200;END=35351215;PERIOD=4;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:2:39.50|39.50:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5718 chr21 35353195 GANGSTR_442883 TCAATCAATCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35353195;END=35353206;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5719 chr21 35359185 GANGSTR_442885 TTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35359185;END=35359196;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5720 chr21 35362039 GANGSTR_442886 AGAAGAAGAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35362039;END=35362050;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:1:1:30.50|30.50:0|0:.:0:.:0:0|46:-3|1;0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5721 chr21 35364420 GANGSTR_442887 GGAGGAGGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35364420;END=35364431;PERIOD=3;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|35:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5722 chr21 35367616 GANGSTR_442888 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=35367616;END=35367631;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:1:23.00|23.00:0|0:.:0:.:0:0|22:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5723 chr21 35368629 GANGSTR_442889 AATTAATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.03;START=35368629;END=35368644;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:2:29.50|29.50:0|0:.:0:.:0:0|27;1|1:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5724 chr21 35372781 GANGSTR_442890 GCTGCTGCTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35372781;END=35372792;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5725 chr21 35373646 GANGSTR_442891 TTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35373646;END=35373661;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5726 chr21 35378507 GANGSTR_442892 TTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35378507;END=35378518;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5727 chr21 35380589 GANGSTR_442893 ATTTAATTTAATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35380589;END=35380603;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5728 chr21 35383445 GANGSTR_442894 TGTTGATGTTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35383445;END=35383456;PERIOD=6;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5729 chr21 35385801 GANGSTR_442895 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35385801;END=35385812;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5730 chr21 35395391 GANGSTR_442897 GGTGGGTGGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35395391;END=35395402;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5731 chr21 35402361 GANGSTR_442898 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35402361;END=35402372;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5732 chr21 35403669 GANGSTR_442899 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35403669;END=35403688;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:1:1:37.00|37.00:0|0:.:0:.:0:-4|1;0|42:-4|1;0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5733 chr21 35404639 GANGSTR_442900 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35404639;END=35404650;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:1:34.00|34.00:0|0:.:0:.:0:0|49;1|1:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5734 chr21 35405325 GANGSTR_442901 TCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35405325;END=35405338;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:2:1:27.00|27.00:0|0:.:0:.:0:-2|2;0|38:-2|2;0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5735 chr21 35406139 GANGSTR_442902 TGTTGTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35406139;END=35406147;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5736 chr21 35413781 GANGSTR_442904 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=35413781;END=35413795;PERIOD=5;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:1:38.00|38.00:0|0:.:0:.:0:-1|1;0|53:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5737 chr21 35416458 GANGSTR_442905 TGATGATGATGATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35416458;END=35416472;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5738 chr21 35417913 GANGSTR_442906 ATAATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35417913;END=35417927;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:34.00|26.00:0|0:.:0:.:0:0|41:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5739 chr21 35420917 GANGSTR_442907 CAAAAAACAAAAAACAAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35420917;END=35420937;PERIOD=7;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=6;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|36:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5740 chr21 35421503 GANGSTR_442908 AATGAAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35421503;END=35421512;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5741 chr21 35421715 GANGSTR_442909 TATATATATATATATATATA TGTATATATATATATATATATATATG . . INFRAME_PGEOM=0.99;INFRAME_UP=0.02;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35421715;END=35421734;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6;DP=64;DSNP=0;DSTUTTER=3;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|6:1:0.5:64:0:3:2:35.98|28.02:0|0:183.45:-0.42:64:-0.21:-34|1;-2|3;0|26;6|13:-2|3;0|26;6|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5742 chr21 35422132 GANGSTR_442910 ACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.9;INFRAME_UP=0.1;INFRAME_DOWN=0.15;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=35422132;END=35422175;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=60;DSNP=0;DSTUTTER=7;DFLANKINDEL=4;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:60:0:7:4:30.00|30.00:0|0:4.55:0:.:0:-22|2;-6|1;-4|7;-2|11;0|1:-6|1;-4|6;-2|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5743 chr21 35425659 GANGSTR_442911 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35425659;END=35425673;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5744 chr21 35427198 GANGSTR_442912 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35427198;END=35427209;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5745 chr21 35429901 GANGSTR_442914 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35429901;END=35429912;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:1:26.50|26.50:0|0:.:0:.:0:0|37:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5746 chr21 35445472 GANGSTR_442915 ACCGCACCGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35445472;END=35445481;PERIOD=5;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5747 chr21 35445790 GANGSTR_442916 GGGCGGGGCGGGGCG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=35445790;END=35445804;PERIOD=5;NSKIP=0;NFILT=0;DP=23;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:23:0:1:0:11.40|11.60:0|0:.:0:.:0:-16|2;0|11:0|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5748 chr21 35446173 GANGSTR_442917 GGCGGGCGGGCG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.03;START=35446173;END=35446184;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=1;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:1:3:24.00|24.00:0|0:.:0:.:0:0|36;1|1:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5749 chr21 35446462 GANGSTR_442918 CGCCGCCGCCGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35446462;END=35446473;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:0|33:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5750 chr21 35449872 GANGSTR_442919 TATATATATATA . . . INFRAME_PGEOM=1;INFRAME_UP=0.01;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=35449872;END=35449883;PERIOD=2;NSKIP=0;NFILT=0;DP=82;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:82:0:2:0:41.00|41.00:0|0:.:0:.:0:-2|1;0|64:-2|1;0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5751 chr21 35451731 GANGSTR_442920 CTTCTTCTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35451731;END=35451742;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5752 chr21 35458509 GANGSTR_442921 GTTTTGTTTTGTTTTGTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35458509;END=35458528;PERIOD=5;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5753 chr21 35464425 GANGSTR_442922 ATATATATATATAT ATATATATATATATAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35464425;END=35464438;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:53:0:0:0:26.50|26.50:0|0:12.21:0:.:0:-3|1;2|40:2|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5754 chr21 35469427 GANGSTR_442923 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35469427;END=35469438;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5755 chr21 35476701 GANGSTR_442924 GAATGAATGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35476701;END=35476712;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5756 chr21 35477716 GANGSTR_442925 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35477716;END=35477727;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5757 chr21 35485309 GANGSTR_442926 AACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35485309;END=35485323;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5758 chr21 35490095 GANGSTR_442927 TGTATGTATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35490095;END=35490106;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5759 chr21 35493775 GANGSTR_442928 CATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35493775;END=35493786;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5760 chr21 35497609 GANGSTR_442929 TTTCTTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35497609;END=35497618;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5761 chr21 35498892 GANGSTR_442930 TGTCTGTCTGTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35498892;END=35498903;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5762 chr21 35500772 GANGSTR_442931 GAGGAGGAGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=35500772;END=35500783;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:1:1:27.50|27.50:0|0:.:0:.:0:-1|1;0|42:-3|1;0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5763 chr21 35506928 GANGSTR_442932 TCCTCCTCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35506928;END=35506939;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5764 chr21 35512436 GANGSTR_442933 CTCTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35512436;END=35512449;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5765 chr21 35514327 GANGSTR_442934 CACACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35514327;END=35514340;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|37:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5766 chr21 35519139 GANGSTR_442935 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35519139;END=35519154;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5767 chr21 35524944 GANGSTR_442937 CCTTCCTTCCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35524944;END=35524955;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5768 chr21 35526495 GANGSTR_442938 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=35526495;END=35526506;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:1:1:31.00|31.00:0|0:.:0:.:0:-1|1;0|43:0|43;4|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5769 chr21 35529473 GANGSTR_442939 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.91;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35529473;END=35529502;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:63:0:0:0:28.49|34.51:0|0:22.63:-0.42:32:0:0|14;4|16:0|11;4|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5770 chr21 35531050 GANGSTR_442940 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35531050;END=35531064;PERIOD=5;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:0:19.50|19.50:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5771 chr21 35538738 GANGSTR_442941 CCAGCCAGCCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35538738;END=35538749;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5772 chr21 35540751 GANGSTR_442942 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35540751;END=35540762;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5773 chr21 35541633 GANGSTR_442943 TTATTTATTTATTTATTTATTTATTTAT TTATTTATTTATTTATTTATTTAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35541633;END=35541660;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:65:0:0:1:32.50|32.50:0|0:10.85:0:.:0:-4|30:-4|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5774 chr21 35544579 GANGSTR_442944 TGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35544579;END=35544588;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5775 chr21 35546039 GANGSTR_442945 CAACAACAACAACAACAACAACAACAACAACAACAA CAACAACAACAACAACAACAACAACAACAACAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=35546039;END=35546074;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=51;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-3|-3:1:1:51:0:1:0:25.50|25.50:0|0:4.94:0:.:0:-3|17:-6|1;-3|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5776 chr21 35551950 GANGSTR_442946 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35551950;END=35551961;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5777 chr21 35552250 GANGSTR_442947 AATTTAATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35552250;END=35552259;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5778 chr21 35557141 GANGSTR_442948 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35557141;END=35557152;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|52:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5779 chr21 35558993 GANGSTR_442949 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35558993;END=35559007;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:1:33.50|33.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5780 chr21 35562444 GANGSTR_442950 CACACACACACACACACACA CACACACACACACACACACACACACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35562444;END=35562463;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|6:1:0.5:68:0:0:0:40.03|27.97:0|0:60.62:-0.92:50:-0.61:-32|1;-13|1;-12|1;0|34;6|12:0|30;6|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5781 chr21 35564402 GANGSTR_442951 CAGCCAGCCAGCCCT CAGCCAGCCAGCCCC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35564402;END=35564413;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:51:0:0:0:20.00|31.00:0|0:59.46:-0.87:45:-0.43:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5782 chr21 35566354 GANGSTR_442953 CTTCCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35566354;END=35566361;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5783 chr21 35568795 GANGSTR_442954 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35568795;END=35568809;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5784 chr21 35568870 GANGSTR_442955 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35568870;END=35568879;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5785 chr21 35569138 GANGSTR_442956 ATATATATATATAT ATATATATATATATAT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.06;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35569138;END=35569151;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:45:0:0:0:23.75|21.25:0|0:6.46:-0.22:32:-0.14:0|21;2|10:0|17;2|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5786 chr21 35571799 GANGSTR_442957 GTGGTGGTGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35571799;END=35571810;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5787 chr21 35571886 GANGSTR_442958 CTGCACTGCACTGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=35571886;END=35571900;PERIOD=5;NSKIP=0;NFILT=0;DP=35;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:0:1:17.50|17.50:0|0:.:0:.:0:0|19;3|1:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5788 chr21 35572313 GANGSTR_442959 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35572313;END=35572328;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5789 chr21 35577683 GANGSTR_442960 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35577683;END=35577694;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5790 chr21 35580006 GANGSTR_442961 ACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.99;INFRAME_UP=0.05;INFRAME_DOWN=0.19;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=35580006;END=35580049;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-8,-2;DP=65;DSNP=0;DSTUTTER=4;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-8|-2:1:0.5:65:0:4:0:30.95|34.05:0|0:5.37:-0.36:42:-0.12:-10|3;-8|12;-4|1;-2|5:-10|3;-8|11;-4|1;-2|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5791 chr21 35580165 GANGSTR_442962 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35580165;END=35580176;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5792 chr21 35581344 GANGSTR_442963 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35581344;END=35581355;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5793 chr21 35583126 GANGSTR_442964 ATATATATATATAT ATATATATATAAATAT,ATATATATATATATAT . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=35583126;END=35583139;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2,2;DP=69;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:2|2:1:0.5:69:0:1:0:40.50|28.50:0|0:27.63:-0.9:52:-0.25:0|2;1|1;2|39:2|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5794 chr21 35584170 GANGSTR_442965 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35584170;END=35584181;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5795 chr21 35586581 GANGSTR_442966 TTGTTGTTGTTGTTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35586581;END=35586595;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:1:0:32.00|32.00:0|0:.:0:.:0:-3|1;0|40:-3|1;0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5796 chr21 35589985 GANGSTR_442967 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35589985;END=35589999;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5797 chr21 35590650 GANGSTR_442968 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35590650;END=35590665;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5798 chr21 35593660 GANGSTR_442969 CCCCACCCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35593660;END=35593669;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5799 chr21 35593943 GANGSTR_442970 ACACACACACACACACACACAC ACACACACACACACACACACACACACAC . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35593943;END=35593964;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6;DP=65;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|6:1:0.5:65:0:2:0:28.48|36.52:0|0:117.24:-0.52:46:0:-7|2;-4|1;-2|3;0|17;1|3;3|2;6|16:-2|1;0|16;4|1;6|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5800 chr21 35597178 GANGSTR_442971 TTTATTTATTTATTTATTTATTTATTTA TTTATTTATTTATTTATTTATTTATTTATTTA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.08;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35597178;END=35597205;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:58:0:0:0:27.28|30.72:0|0:5.64:-0.23:30:0:-8|1;0|12;4|13:0|11;4|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5801 chr21 35597731 GANGSTR_442972 GAAGGAAGGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35597731;END=35597742;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5802 chr21 35600783 GANGSTR_442973 TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=35600783;END=35600830;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=79;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:79:0:1:0:39.50|39.50:0|0:7.19:0:.:0:-24|2;-4|2;-3|1;0|1;4|22:0|1;4|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5803 chr21 35604735 GANGSTR_442974 TTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35604735;END=35604742;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5804 chr21 35604930 GANGSTR_442975 ATTTTTATTTTTATTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35604930;END=35604947;PERIOD=6;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5805 chr21 35611183 GANGSTR_442976 CTATCTATCTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=35611183;END=35611194;PERIOD=4;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:0:19.50|19.50:0|0:.:0:.:0:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5806 chr21 35612359 GANGSTR_442977 AGAGAGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35612359;END=35612374;PERIOD=2;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5807 chr21 35619377 GANGSTR_442978 AGTGAGTGAGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35619377;END=35619388;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|47:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5808 chr21 35623390 GANGSTR_442979 AAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35623390;END=35623409;PERIOD=5;NSKIP=0;NFILT=0;DP=82;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:82:0:0:0:41.00|41.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5809 chr21 35628925 GANGSTR_442980 CACACACACACACACACACACACACACACACACACA . . . INFRAME_PGEOM=0.99;INFRAME_UP=0.04;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35628925;END=35628960;PERIOD=2;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=5;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:5:2:40.00|40.00:0|0:.:0:.:0:-2|5;0|38;2|1:-2|2;0|34;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5810 chr21 35643610 GANGSTR_442982 CACACACACACACACACACACACACACA CACACACACACACACACACACACACACACACACACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35643610;END=35643637;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=8;DP=59;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|8:1:0.5:59:0:1:1:29.52|29.48:0|0:77.58:0:38:0:-45|1;-11|3;-9|1;-4|2;-2|2;0|20;8|9:-2|1;0|15;8|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5811 chr21 35647880 GANGSTR_442983 TCTTTCTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35647880;END=35647891;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:28.00|30.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5812 chr21 35648694 GANGSTR_442984 TTTAATTTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35648694;END=35648703;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5813 chr21 35650165 GANGSTR_442985 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35650165;END=35650176;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|51:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5814 chr21 35650766 GANGSTR_442986 CTCCCTCCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35650766;END=35650777;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5815 chr21 35658717 GANGSTR_442987 TTGGTTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35658717;END=35658724;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|50:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5816 chr21 35658780 GANGSTR_442988 ACCTACCTACCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35658780;END=35658791;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5817 chr21 35666091 GANGSTR_442989 ATGAATGAATGAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35666091;END=35666106;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5818 chr21 35668011 GANGSTR_442990 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35668011;END=35668022;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|52:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5819 chr21 35668092 GANGSTR_442991 CTTTTCTTTTCTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35668092;END=35668106;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5820 chr21 35671563 GANGSTR_442992 TTTTAATTTTAATTTTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35671563;END=35671580;PERIOD=6;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:2:36.00|36.00:0|0:.:0:.:0:0|41:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5821 chr21 35677183 GANGSTR_442993 TTGTTGTTGTTG TTTTTTTTGTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35677183;END=35677194;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:46:0:0:1:30.18|15.82:0|0:71.1:-1.41:40:-0.13:-19|1;-4|1;0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5822 chr21 35679838 GANGSTR_442995 GTCTGTCTGTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35679838;END=35679849;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5823 chr21 35685592 GANGSTR_442996 GGAAGGAAGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35685592;END=35685603;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|47:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5824 chr21 35687467 GANGSTR_442997 CAAAACAAAACAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35687467;END=35687491;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5825 chr21 35689861 GANGSTR_442998 AAACCAAACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35689861;END=35689870;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:1:33.50|33.50:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5826 chr21 35708341 GANGSTR_442999 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35708341;END=35708356;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:1:2:31.50|31.50:0|0:.:0:.:0:-4|1;0|41:-4|1;0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5827 chr21 35712556 GANGSTR_443000 AGGAGGAGGAGGAGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35712556;END=35712576;PERIOD=3;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5828 chr21 35719395 GANGSTR_443001 ACAAACAAACAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35719395;END=35719410;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5829 chr21 35721370 GANGSTR_443002 TAAATAAATAAATAAATAAATAAATAAATAAA TAAATAAATAAATAAATAAATAAATAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=35721370;END=35721401;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:50:0:0:0:25.00|25.00:0|0:4.68:0:.:0:-4|15:-4|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5830 chr21 35721821 GANGSTR_443003 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35721821;END=35721835;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5831 chr21 35723781 GANGSTR_443004 ACACACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35723781;END=35723798;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5832 chr21 35733576 GANGSTR_443005 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35733576;END=35733587;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5833 chr21 35734735 GANGSTR_443006 TGAGTGAGTGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35734735;END=35734746;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5834 chr21 35735327 GANGSTR_443007 AACAACAACAAC AACAACAACAACAAC . . INFRAME_PGEOM=0.96;INFRAME_UP=0.07;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35735327;END=35735338;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=3;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|3:1:0.5:38:0:0:0:18.80|19.20:0|0:6.76:0:28:-0.36:-1|1;0|14;3|10:0|13;3|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5835 chr21 35741209 GANGSTR_443008 TGGTGGTGGTGGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35741209;END=35741223;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5836 chr21 35744813 GANGSTR_443009 CAGCCAGCCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35744813;END=35744824;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5837 chr21 35755548 GANGSTR_443010 AATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35755548;END=35755562;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|45:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5838 chr21 35760709 GANGSTR_443012 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35760709;END=35760724;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5839 chr21 35761485 GANGSTR_443013 TCTCTTTCTCTTTCTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35761485;END=35761502;PERIOD=6;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|40:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5840 chr21 35763336 GANGSTR_443014 GTTTGTTTGTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35763336;END=35763355;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5841 chr21 35766695 GANGSTR_443015 TGGTGGTGGTGGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35766695;END=35766709;PERIOD=3;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:1:36.00|36.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5842 chr21 35768831 GANGSTR_443016 ATTTATTTATTTATTTATTTATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=35768831;END=35768866;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|18:0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5843 chr21 35769802 GANGSTR_443017 CTGTCCTGTCCTGTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35769802;END=35769816;PERIOD=5;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5844 chr21 35772102 GANGSTR_443019 AAGGAAGGAAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35772102;END=35772113;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5845 chr21 35773681 GANGSTR_443020 CATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35773681;END=35773688;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|51:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5846 chr21 35777836 GANGSTR_443021 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35777836;END=35777847;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5847 chr21 35779369 GANGSTR_443022 CCTTCCTTCCTTCCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35779369;END=35779384;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5848 chr21 35779686 GANGSTR_443023 TGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35779686;END=35779699;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|34:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5849 chr21 35780842 GANGSTR_443024 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35780842;END=35780853;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5850 chr21 35782476 GANGSTR_443025 TTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35782476;END=35782495;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:1:33.00|33.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5851 chr21 35785862 GANGSTR_443026 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35785862;END=35785873;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5852 chr21 35788912 GANGSTR_443027 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35788912;END=35788923;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5853 chr21 35790006 GANGSTR_443028 ACCACCACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35790006;END=35790014;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|52:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5854 chr21 35792130 GANGSTR_443030 TTGTTTTGTTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35792130;END=35792144;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:1:32.00|32.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5855 chr21 35795703 GANGSTR_443031 AACAAACAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35795703;END=35795714;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5856 chr21 35798102 GANGSTR_443032 ATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35798102;END=35798115;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5857 chr21 35803098 GANGSTR_443033 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35803098;END=35803109;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5858 chr21 35803571 GANGSTR_443034 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35803571;END=35803582;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5859 chr21 35806824 GANGSTR_443035 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35806824;END=35806835;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5860 chr21 35809621 GANGSTR_443036 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35809621;END=35809632;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5861 chr21 35810184 GANGSTR_443037 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35810184;END=35810203;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5862 chr21 35823150 GANGSTR_443038 TTTATTTATTTATTTATTTATTTATTTA TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=35823150;END=35823177;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=16;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|16:1:0.5:60:0:0:1:32.05|27.95:0|0:45.51:-0.22:34:0:-2|3;0|18;2|3;5|1;9|1;16|5:0|17;16|4:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5863 chr21 35829615 GANGSTR_443039 TTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35829615;END=35829629;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5864 chr21 35830374 GANGSTR_443040 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=35830374;END=35830385;PERIOD=4;NSKIP=0;NFILT=0;DP=26;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:26:0:0:1:13.00|13.00:0|0:.:0:.:0:0|16:0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5865 chr21 35833823 GANGSTR_443041 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35833823;END=35833838;PERIOD=4;NSKIP=0;NFILT=0;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:78:0:0:0:39.00|39.00:0|0:.:0:.:0:0|54:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5866 chr21 35834989 GANGSTR_443042 TTCTTCTTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35834989;END=35835000;PERIOD=3;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:2:35.50|35.50:0|0:.:0:.:0:0|51:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5867 chr21 35841329 GANGSTR_443043 AAACAAACAAACAAAC AAACAAACAAACAAACAAACAAACAAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=35841329;END=35841344;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=12;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:12|12:1:1:65:0:0:1:32.50|32.50:0|0:13.26:0:.:0:-41|1;-15|11;0|2;2|1;6|3;12|27:12|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5868 chr21 35842772 GANGSTR_443044 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35842772;END=35842783;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5869 chr21 35843497 GANGSTR_443045 TATCTATCTATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35843497;END=35843508;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5870 chr21 35849348 GANGSTR_443046 ATATATATATAT ATATATATATATAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35849348;END=35849359;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:58:0:0:1:29.00|29.00:0|0:13.71:0:.:0:0|2;2|44:2|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5871 chr21 35851359 GANGSTR_443047 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35851359;END=35851370;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5872 chr21 35855622 GANGSTR_443048 GGAAGGGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35855622;END=35855631;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5873 chr21 35857196 GANGSTR_443049 GGTGGGTGGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35857196;END=35857207;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5874 chr21 35861966 GANGSTR_443050 TCCCTCCCTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35861966;END=35861977;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|49:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5875 chr21 35863261 GANGSTR_443051 ACACACACACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35863261;END=35863280;PERIOD=2;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:1:0:23.50|23.50:0|0:.:0:.:0:-2|1;0|29:-2|1;0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5876 chr21 35864310 GANGSTR_443052 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35864310;END=35864321;PERIOD=2;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5877 chr21 35865958 GANGSTR_443053 TTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35865958;END=35865977;PERIOD=5;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:0:0:40.00|40.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5878 chr21 35866860 GANGSTR_443054 TTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35866860;END=35866874;PERIOD=3;NSKIP=0;NFILT=0;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:78:0:0:1:39.00|39.00:0|0:.:0:.:0:-3|1;0|58:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5879 chr21 35869527 GANGSTR_443055 TGTTGTTGTTGTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35869527;END=35869541;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5880 chr21 35872409 GANGSTR_443056 TTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35872409;END=35872418;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5881 chr21 35875331 GANGSTR_443057 CAATTCAATTCAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35875331;END=35875345;PERIOD=5;NSKIP=0;NFILT=0;DP=85;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:85:0:0:0:42.50|42.50:0|0:.:0:.:0:0|61:0|61:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5882 chr21 35877432 GANGSTR_443058 TATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35877432;END=35877447;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5883 chr21 35885029 GANGSTR_443059 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35885029;END=35885043;PERIOD=5;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:1:38.00|38.00:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5884 chr21 35885729 GANGSTR_443060 TCTCTCTCTCTCTCTCTCTCTC . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35885729;END=35885750;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:2:0:25.00|25.00:0|0:.:0:.:0:-2|1;0|29:-2|1;0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5885 chr21 35895785 GANGSTR_443061 AGGGAGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=35895785;END=35895796;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:1:34.00|34.00:0|0:.:0:.:0:-1|1;0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5886 chr21 35903272 GANGSTR_443062 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35903272;END=35903286;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5887 chr21 35909753 GANGSTR_443063 TGGTGGTGGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35909753;END=35909764;PERIOD=3;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|50:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5888 chr21 35910125 GANGSTR_443064 TGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.73;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35910125;END=35910144;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:1:0:26.00|26.00:0|0:.:0:.:0:-4|1;0|30:-4|1;0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5889 chr21 35915343 GANGSTR_443065 GTGGTGGTGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35915343;END=35915354;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5890 chr21 35916936 GANGSTR_443066 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35916936;END=35916951;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5891 chr21 35917444 GANGSTR_443067 AAAGCAAAGCAAAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35917444;END=35917458;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5892 chr21 35927680 GANGSTR_443068 AAATGAAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35927680;END=35927689;PERIOD=5;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5893 chr21 35928728 GANGSTR_443070 AATAATAATAATAATAATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=35928728;END=35928757;PERIOD=3;NSKIP=0;NFILT=0;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:36:0:0:0:18.00|18.00:0|0:.:0:.:0:0|19:0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5894 chr21 35929522 GANGSTR_443071 TAAAATTAAATTAAATT TTAAATTAAATTAAATT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35929524;END=35929538;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:62:0:0:0:31.00|31.00:0|0:17.11:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5895 chr21 35931433 GANGSTR_443072 GATGGATGGATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35931433;END=35931444;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5896 chr21 35932738 GANGSTR_443073 AAGAATAAGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35932738;END=35932749;PERIOD=6;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|41:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5897 chr21 35937341 GANGSTR_443074 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35937341;END=35937356;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:0|35:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5898 chr21 35943595 GANGSTR_443075 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35943595;END=35943606;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5899 chr21 35944852 GANGSTR_443076 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35944852;END=35944863;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5900 chr21 35949163 GANGSTR_443077 TCATTCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35949163;END=35949170;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5901 chr21 35949899 GANGSTR_443078 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35949899;END=35949918;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:1:0:22.50|22.50:0|0:.:0:.:0:-4|1;0|25:-4|1;0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5902 chr21 35953212 GANGSTR_443079 CAGGCAGGCAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35953212;END=35953223;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5903 chr21 35953828 GANGSTR_443080 AGGAGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35953828;END=35953839;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:2:26.00|26.00:0|0:.:0:.:0:0|37:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5904 chr21 35955260 GANGSTR_443081 AGAGAGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35955260;END=35955275;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|35:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5905 chr21 35966856 GANGSTR_443082 AACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35966856;END=35966870;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5906 chr21 35977177 GANGSTR_443083 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35977177;END=35977188;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5907 chr21 35987254 GANGSTR_443084 CGCCTCCGCCGCCTCCGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=35987254;END=35987271;PERIOD=9;NSKIP=0;NFILT=0;DP=35;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:0:0:17.50|17.50:0|0:.:0:.:0:0|15:0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5908 chr21 35989566 GANGSTR_443085 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35989566;END=35989577;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:3:29.50|29.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5909 chr21 35991106 GANGSTR_443086 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35991106;END=35991117;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5910 chr21 35992078 GANGSTR_443087 TTGTTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=35992078;END=35992087;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5911 chr21 35997654 GANGSTR_443088 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35997654;END=35997665;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5912 chr21 35999801 GANGSTR_443089 TTTGTTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=35999801;END=35999824;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:1:1:36.50|36.50:0|0:.:0:.:0:-4|1;0|30:-4|1;0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5913 chr21 35999990 GANGSTR_443090 TTTTCTTTTCTTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=35999990;END=36000009;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:1:34.50|34.50:0|0:.:0:.:0:-1|1;0|35:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5914 chr21 36005207 GANGSTR_443091 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36005207;END=36005218;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5915 chr21 36006431 GANGSTR_443092 CAATTCAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36006431;END=36006440;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5916 chr21 36007212 GANGSTR_443093 AAGGAAGGAAGGAAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36007212;END=36007227;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5917 chr21 36009540 GANGSTR_443094 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36009540;END=36009551;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5918 chr21 36012813 GANGSTR_443095 TATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36012813;END=36012822;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5919 chr21 36018183 GANGSTR_443096 TTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36018183;END=36018197;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|37:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5920 chr21 36022877 GANGSTR_443097 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36022877;END=36022888;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5921 chr21 36033793 GANGSTR_443099 AAAGACAAAGAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36033793;END=36033804;PERIOD=6;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5922 chr21 36035468 GANGSTR_443100 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36035468;END=36035479;PERIOD=2;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5923 chr21 36038694 GANGSTR_443101 TCTTTCTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36038694;END=36038705;PERIOD=6;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5924 chr21 36044163 GANGSTR_443103 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36044163;END=36044174;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|41:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5925 chr21 36044602 GANGSTR_443104 TTCTTTCTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36044602;END=36044613;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5926 chr21 36048950 GANGSTR_443105 GCAGCAGCAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36048950;END=36048961;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|34:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5927 chr21 36058700 GANGSTR_443106 AAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36058700;END=36058714;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5928 chr21 36060354 GANGSTR_443107 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.98;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=36060354;END=36060365;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:2:31.00|31.00:0|0:.:0:.:0:-1|1;0|36;1|1:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5929 chr21 36068700 GANGSTR_443109 AAACAAACAAACAAAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36068700;END=36068715;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:1:0:34.00|34.00:0|0:.:0:.:0:-4|1;0|49:-4|1;0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5930 chr21 36071542 GANGSTR_443110 TGTTTTGTTTTGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36071542;END=36071566;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5931 chr21 36079736 GANGSTR_443114 CACACACACACACACACACACACACACACACA CACACACACACACACACACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36079736;END=36079767;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-12;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-12|-12:1:1:63:0:0:1:31.50|31.50:0|0:11.73:0:.:0:-14|1;-12|37:-12|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5932 chr21 36080445 GANGSTR_443115 GTGTGTGTGTGTGT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36080445;END=36080458;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:1:0:25.50|25.50:0|0:.:0:.:0:-2|1;0|36:-2|1;0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5933 chr21 36082597 GANGSTR_443116 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36082597;END=36082608;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:1:24.50|24.50:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5934 chr21 36083827 GANGSTR_443117 AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT AAATAAATAAATAAATAAATAAATAAATAAATAAAT,AAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT . . INFRAME_PGEOM=0.96;INFRAME_UP=0.11;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=36083827;END=36083870;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-8,-4;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-8|-4:0.77:0.39:44:0:0:0:19.64|24.36:0|0:0.53:-1.46:23:-0.19:-8|4;-4|6:-8|4;-4|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5935 chr21 36086189 GANGSTR_443118 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36086189;END=36086200;PERIOD=3;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:0:0:40.00|40.00:0|0:.:0:.:0:0|54:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5936 chr21 36095456 GANGSTR_443119 AGGAGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36095456;END=36095467;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5937 chr21 36096610 GANGSTR_443120 AGGAAGGA AGGGAGGA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36096610;END=36096617;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:58:0:0:0:29.00|29.00:0|0:15.95:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5938 chr21 36101559 GANGSTR_443121 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36101559;END=36101574;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5939 chr21 36107894 GANGSTR_443122 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36107894;END=36107905;PERIOD=2;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|54:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5940 chr21 36111632 GANGSTR_443123 TCCTCCTCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36111632;END=36111643;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5941 chr21 36111893 GANGSTR_443124 TTATTTATTTAT TCATTTATTTAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36111893;END=36111904;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:51:0:0:0:25.50|25.50:0|0:13.54:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5942 chr21 36118837 GANGSTR_443126 AAATAAATAAAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36118837;END=36118848;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:1:0:29.00|29.00:0|0:.:0:.:0:-4|1;0|40:-4|1;0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5943 chr21 36119280 GANGSTR_443127 CCTCCCTCCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36119280;END=36119291;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5944 chr21 36120855 GANGSTR_443128 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.96;INFRAME_UP=0.07;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36120855;END=36120896;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=74;DSNP=0;DSTUTTER=1;DFLANKINDEL=3;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:74:0:1:3:38.28|35.72:0|0:7.4:-0.24:28:-0.15:-13|1;0|19;2|9:0|17;2|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5945 chr21 36122726 GANGSTR_443129 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36122726;END=36122737;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|39:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5946 chr21 36125370 GANGSTR_443130 ATGAATGAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36125370;END=36125381;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5947 chr21 36129084 GANGSTR_443131 TGAATGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36129084;END=36129099;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5948 chr21 36130481 GANGSTR_443132 TGTATGTATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36130481;END=36130492;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:1:33.50|33.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5949 chr21 36135427 GANGSTR_443133 TCCTCCTCCTCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36135427;END=36135441;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5950 chr21 36136774 GANGSTR_443134 TCTCTCTCTCTC TCTCTCTCTCTCTCTCTC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=36136774;END=36136785;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6;DP=31;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|6:1:0.5:31:0:0:0:14.11|16.89:0|0:31.44:-0.17:23:0:-3|1;-1|1;0|10;6|8:0|7;6|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5951 chr21 36136912 GANGSTR_443135 ATAAATAAATAAATAAATAAATAA ATAAATAAATAAATAAATAA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.07;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36136912;END=36136935;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:39:0:0:0:17.62|21.38:0|0:6.14:-0.33:31:-0.14:-4|16;0|12:-4|16;0|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5952 chr21 36141107 GANGSTR_443136 AAATGAAATGAAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36141107;END=36141121;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5953 chr21 36145061 GANGSTR_443137 CTTTCTTTCTTT CTTTCTTTCTTTCTTTCTTTCTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36145061;END=36145072;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=12;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|12:1:0.5:67:0:0:0:34.00|33.00:0|0:95.94:-0:67:0:-14|1;-4|1;0|30;10|1;12|12:0|21;12|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5954 chr21 36145623 GANGSTR_443138 TGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36145623;END=36145642;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|6:1:0.5:66:0:0:1:38.03|27.97:0|0:56.03:-0.74:46:-1.48:-12|2;0|28;4|1;6|14:0|26;6|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5955 chr21 36147933 GANGSTR_443139 AAGAAAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36147933;END=36147944;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5956 chr21 36156099 GANGSTR_443140 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=36156099;END=36156110;PERIOD=2;NSKIP=0;NFILT=0;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:78:0:0:1:38.46|39.54:0|0:.:0:.:0:0|66:0|61:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5957 chr21 36159553 GANGSTR_443141 TTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36159553;END=36159567;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5958 chr21 36160913 GANGSTR_443142 TACATACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=36160913;END=36160920;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:1:1:28.50|28.50:0|0:.:0:.:0:-1|1;0|45:-4|1;0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5959 chr21 36163735 GANGSTR_443143 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36163735;END=36163749;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5960 chr21 36173050 GANGSTR_443144 CCTCCCTCCCTCCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36173050;END=36173065;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|55:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5961 chr21 36187222 GANGSTR_443145 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36187222;END=36187233;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5962 chr21 36187547 GANGSTR_443146 TTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36187547;END=36187554;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:1:2:31.00|31.00:0|0:.:0:.:0:0|44:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5963 chr21 36188725 GANGSTR_443147 GGTGGTGGTGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36188725;END=36188736;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5964 chr21 36190453 GANGSTR_443148 TGGGGTGGGGTGGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36190453;END=36190467;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5965 chr21 36190608 GANGSTR_443149 TTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36190608;END=36190619;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5966 chr21 36201735 GANGSTR_443150 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36201735;END=36201746;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|49:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5967 chr21 36205393 GANGSTR_443151 TTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36205393;END=36205412;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5968 chr21 36207489 GANGSTR_443152 CCCTCTCCCTCTCCCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=36207489;END=36207506;PERIOD=6;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|24:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5969 chr21 36209283 GANGSTR_443153 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36209283;END=36209294;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5970 chr21 36214304 GANGSTR_443154 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36214304;END=36214315;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5971 chr21 36215006 GANGSTR_443155 ACACACATACACACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36215006;END=36215021;PERIOD=8;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|53:0|57:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5972 chr21 36215818 GANGSTR_443156 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36215818;END=36215829;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|48:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5973 chr21 36222325 GANGSTR_443157 AACAACAACAAC AACAACAAC . . INFRAME_PGEOM=0.98;INFRAME_UP=0.06;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.03;START=36222325;END=36222336;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-3:1:0.5:46:0:0:1:21.96|24.04:0|0:10.12:-0.06:36:-1.03:-3|14;-2|1;0|17:-3|18;0|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5974 chr21 36224467 GANGSTR_443158 AAAACAAAACAAAACAAAACAAAACAAAAC AAAACAAAACAAAACAAAACAAAAC,AAAACAAAACAAAACAAAACAAAACAAAACAAAAC . . INFRAME_PGEOM=0.91;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36224467;END=36224496;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-5,5;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-5|5:1:0.5:68:0:0:1:33.10|34.90:0|0:22.03:-0.06:38:-0.29:-5|19;2|1;5|10:-5|18;5|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5975 chr21 36227264 GANGSTR_443159 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36227264;END=36227275;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:1:24.00|24.00:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5976 chr21 36228008 GANGSTR_443160 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36228008;END=36228027;PERIOD=4;NSKIP=0;NFILT=0;DP=87;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:87:0:0:1:43.50|43.50:0|0:.:0:.:0:0|52:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5977 chr21 36233589 GANGSTR_443161 ATGTGATGTGATGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36233589;END=36233603;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5978 chr21 36234413 GANGSTR_443162 GAGAGAGAGAGAGAGAGAGA . . . INFRAME_PGEOM=0.99;INFRAME_UP=0.02;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36234413;END=36234432;PERIOD=2;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:3:0:33.00|33.00:0|0:.:0:.:0:-2|3;0|39:-2|3;0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5979 chr21 36241151 GANGSTR_443163 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36241151;END=36241162;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5980 chr21 36243274 GANGSTR_443164 AAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36243274;END=36243281;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5981 chr21 36243758 GANGSTR_443165 ACAAACAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36243758;END=36243769;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5982 chr21 36245378 GANGSTR_443166 ATAGATAGATAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36245378;END=36245389;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5983 chr21 36253570 GANGSTR_443167 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36253570;END=36253579;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5984 chr21 36255283 GANGSTR_443168 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36255283;END=36255294;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|59:0|58:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5985 chr21 36263086 GANGSTR_443169 CGCCCGCCCGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36263086;END=36263097;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5986 chr21 36264083 GANGSTR_443170 GAGGGAGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36264083;END=36264094;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5987 chr21 36267178 GANGSTR_443171 ACACACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=36267178;END=36267225;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=63;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-6:1:0.5:63:0:1:1:33.93|29.07:0|0:28.35:-0.39:23:-0.19:-10|1;-6|8;0|12:-10|1;-6|7;0|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5988 chr21 36268983 GANGSTR_443172 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36268983;END=36268997;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5989 chr21 36273816 GANGSTR_443173 AATAATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36273816;END=36273833;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5990 chr21 36274353 GANGSTR_443174 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36274353;END=36274364;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5991 chr21 36275666 GANGSTR_443175 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36275666;END=36275677;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:1:34.00|34.00:0|0:.:0:.:0:0|56:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5992 chr21 36279645 GANGSTR_443176 TAATAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36279645;END=36279659;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5993 chr21 36282232 GANGSTR_443177 TCCTCCTCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36282232;END=36282243;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5994 chr21 36284450 GANGSTR_443178 GAATGAATGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36284450;END=36284461;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5995 chr21 36286925 GANGSTR_443179 CCTCCCTCCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36286925;END=36286936;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5996 chr21 36291205 GANGSTR_443180 AAAATAAAATAC AAAATAAAATAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36291205;END=36291214;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:54:0:0:0:27.00|27.00:0|0:15:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5997 chr21 36292209 GANGSTR_443181 TTCCTTCCTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36292209;END=36292220;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|47:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5998 chr21 36304558 GANGSTR_443182 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=36304558;END=36304569;PERIOD=4;NSKIP=0;NFILT=0;DP=84;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:84:0:0:1:42.00|42.00:0|0:.:0:.:0:0|65:0|64:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
5999 chr21 36321214 GANGSTR_443183 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36321214;END=36321225;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6000 chr21 36324673 GANGSTR_443184 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36324673;END=36324684;PERIOD=3;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|28:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6001 chr21 36336284 GANGSTR_443185 CATTCATTCATTCATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36336284;END=36336307;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6002 chr21 36338021 GANGSTR_443187 CACACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36338021;END=36338034;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|44:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6003 chr21 36343802 GANGSTR_443188 CCATCCATCCATCCATCCATCCATCCATCCATCCATCCAT CCATCCATCCATCCATCCATCCATCCATCCATCCAT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.08;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=36343802;END=36343841;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:61:0:0:0:30.48|30.52:0|0:5.54:-0:25:0:-4|11;0|8:-4|12;0|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6004 chr21 36354695 GANGSTR_443189 GTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.84;INFRAME_UP=0.03;INFRAME_DOWN=0.14;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36354695;END=36354714;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=8;DP=61;DSNP=0;DSTUTTER=4;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:8|8:1:1:61:0:4:1:30.50|30.50:0|0:11.01:0:.:0:-33|1;-28|1;-6|1;0|2;4|1;5|2;6|2;8|26:4|1;6|2;8|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6005 chr21 36357139 GANGSTR_443190 GAAGGAAGGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36357139;END=36357150;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6006 chr21 36357976 GANGSTR_443191 ACAGACAGACAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36357976;END=36357987;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|54:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6007 chr21 36361292 GANGSTR_443192 TCTCTCTCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36361292;END=36361311;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:-1|1;0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6008 chr21 36368931 GANGSTR_443193 CTCTCTCTCTCTCT . . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36368931;END=36368944;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:1:0:26.00|26.00:0|0:.:0:.:0:0|34;2|1:0|32;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6009 chr21 36381217 GANGSTR_443195 AAGAAAAGAAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36381217;END=36381231;PERIOD=5;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6010 chr21 36389179 GANGSTR_443196 TGTGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36389179;END=36389200;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:1:1:29.00|29.00:0|0:.:0:.:0:-14|1;0|31:-2|1;0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6011 chr21 36390319 GANGSTR_443197 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36390319;END=36390334;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6012 chr21 36393273 GANGSTR_443198 GGCTGGCTGGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36393273;END=36393284;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6013 chr21 36395753 GANGSTR_443200 GGTGGGTGGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36395753;END=36395764;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6014 chr21 36400023 GANGSTR_443201 ACACACACACAC ACACACATACAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36400023;END=36400034;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:52:0:0:0:26.00|26.00:0|0:14.12:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6015 chr21 36405420 GANGSTR_443202 TCATTCATTCATTCAT TCATTCATTCATTCATTCAT . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36405420;END=36405435;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=70;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:70:0:1:0:35.00|35.00:0|0:11.24:0:.:0:-28|4;-8|1;0|1;4|35:0|1;4|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6016 chr21 36422283 GANGSTR_443204 ACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=36422283;END=36422322;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=61;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:61:0:1:1:30.50|30.50:0|0:8.1:0:.:0:-6|2;-4|24:-6|1;-4|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6017 chr21 36425163 GANGSTR_443205 AAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36425163;END=36425170;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6018 chr21 36427361 GANGSTR_443206 TATTTATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36427361;END=36427380;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6019 chr21 36436741 GANGSTR_443207 CAAAACAAAACAAAACAAAA CAAAACAAAACAAAA . . INFRAME_PGEOM=0.94;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36436741;END=36436760;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-5;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-5:1:0.5:65:0:0:0:26.82|38.18:0|0:10.82:-1.23:48:0:-5|31;0|13:-5|31;0|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6020 chr21 36439319 GANGSTR_443208 ATCAATCAATCAG ATCAATCAATCAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36439319;END=36439330;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:55:0:0:0:27.96|27.04:0|0:79.05:0:47:-0.25:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6021 chr21 36442874 GANGSTR_443209 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36442874;END=36442885;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|33:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6022 chr21 36445073 GANGSTR_443210 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36445073;END=36445084;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:29.00|26.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6023 chr21 36449040 GANGSTR_443211 ACACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACACACACACACAT . . INFRAME_PGEOM=0.94;INFRAME_UP=0.08;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=36449040;END=36449085;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6,0;DP=70;DSNP=0;DSTUTTER=4;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-6|0:1:0.5:70:0:4:1:38.35|31.65:0|0:42.19:-0.25:47:-0.44:-8|1;-6|12;-4|1;-2|1;0|8:-8|1;-6|10;-4|1;-2|1;0|4;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6024 chr21 36455406 GANGSTR_443212 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36455406;END=36455417;PERIOD=2;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:2:23.50|23.50:0|0:.:0:.:0:0|42:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6025 chr21 36456059 GANGSTR_443213 CCAGCCAGCCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36456059;END=36456070;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6026 chr21 36460048 GANGSTR_443214 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36460048;END=36460059;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|53:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6027 chr21 36463988 GANGSTR_443215 ATGCATGCATGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36463988;END=36463999;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:34.00|32.00:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6028 chr21 36475727 GANGSTR_443216 CTCCCTCCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36475727;END=36475738;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6029 chr21 36477964 GANGSTR_443217 ATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36477964;END=36477979;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6030 chr21 36483310 GANGSTR_443218 ATATTACATATATTACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=36483310;END=36483327;PERIOD=9;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|23:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6031 chr21 36487463 GANGSTR_443219 TTCTTTCTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36487463;END=36487474;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6032 chr21 36488603 GANGSTR_443220 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36488603;END=36488614;PERIOD=2;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6033 chr21 36498738 GANGSTR_443221 TATATATATATATA TATATATATATA . . INFRAME_PGEOM=0.98;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36498738;END=36498751;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:56:0:0:0:27.89|28.11:0|0:15.01:0:42:-0.45:-2|18;0|19:-2|18;0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6034 chr21 36500039 GANGSTR_443222 ATATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36500039;END=36500054;PERIOD=2;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6035 chr21 36503187 GANGSTR_443223 TCTTCTTCTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36503187;END=36503198;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|40:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6036 chr21 36503706 GANGSTR_443224 TAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36503706;END=36503714;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6037 chr21 36507644 GANGSTR_443225 TTTACTTTACTTTAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36507644;END=36507658;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6038 chr21 36510159 GANGSTR_443226 TGTTTATTTATTTATTTATTTATTTATTTA TATTTATTTATTTATTTATTTA . . INFRAME_PGEOM=0.91;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=36510161;END=36510188;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-8;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-8:1:0.5:56:0:0:0:32.08|23.92:0|0:43.25:-0.54:44:-0.98:-8|11;0|11:-8|13;0|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6039 chr21 36510680 GANGSTR_443227 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36510680;END=36510711;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,8;DP=63;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|8:1:0.5:63:0:2:0:34.54|28.46:0|0:24.52:-0.32:50:-0.6:-28|1;-26|1;-2|21;0|3;6|1;8|11:-2|20;8|10;10|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6040 chr21 36524857 GANGSTR_443228 ATAAAATAAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36524857;END=36524871;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6041 chr21 36527149 GANGSTR_443229 AAAAAAACAAAACAAAAC ACAAAAAAAAAAACAAAAACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.55;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.05;START=36527153;END=36527162;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=3;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=7;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|3:1:0.5:56:0:0:0:28.00|28.00:0|0:374.06:0:56:-0:-3|2;0|18;3|19:0|18;3|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6042 chr21 36532193 GANGSTR_443231 AGAGAGAGAGAGAG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36532193;END=36532206;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:1:1:37.46|22.54:0|0:.:0:.:0:-2|1;0|40:-2|1;0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6043 chr21 36537160 GANGSTR_443232 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36537160;END=36537171;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:22.51|20.49:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6044 chr21 36543089 GANGSTR_443233 CCTTCCTTCCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36543089;END=36543100;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6045 chr21 36546395 GANGSTR_443234 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36546395;END=36546406;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|29:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6046 chr21 36551399 GANGSTR_443235 AGTGAGTGAGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36551399;END=36551410;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6047 chr21 36555080 GANGSTR_443236 ATTATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36555080;END=36555097;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:30.42|27.58:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6048 chr21 36560682 GANGSTR_443237 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36560682;END=36560693;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:32.46|37.54:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6049 chr21 36563290 GANGSTR_443239 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36563290;END=36563301;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6050 chr21 36568412 GANGSTR_443240 AGTGAGTGAGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36568412;END=36568423;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6051 chr21 36570970 GANGSTR_443241 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36570970;END=36570981;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|58:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6052 chr21 36571331 GANGSTR_443242 ACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.99;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36571331;END=36571364;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=68;DSNP=0;DSTUTTER=2;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:68:0:2:2:35.31|32.69:0|0:45.89:-0.06:40:-0.28:-27|2;-9|1;-2|1;0|22;2|1;4|12:0|18;2|1;4|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6053 chr21 36574432 GANGSTR_443243 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36574432;END=36574443;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6054 chr21 36575072 GANGSTR_443244 GTTGTTGTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=36575072;END=36575083;PERIOD=3;NSKIP=0;NFILT=0;DP=83;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:83:0:0:0:41.50|41.50:0|0:.:0:.:0:0|64:0|62:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6055 chr21 36583369 GANGSTR_443247 ACAAACAAACAAACAAACAAACAAACAAACAA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36583369;END=36583400;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:1:0:35.50|35.50:0|0:.:0:.:0:-4|1;0|35:-4|1;0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6056 chr21 36586549 GANGSTR_443248 AGACAGACAGAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36586549;END=36586560;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6057 chr21 36587107 GANGSTR_443249 ATATATATATATATATATATAT AAATATATATATATATATATAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=36587107;END=36587128;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=29;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:29:0:1:0:14.50|14.50:0|0:7.52:0:.:0:0|19:0|16;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6058 chr21 36593659 GANGSTR_443250 ATGAATGAATGAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36593659;END=36593674;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|53:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6059 chr21 36594484 GANGSTR_443252 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36594484;END=36594495;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6060 chr21 36601049 GANGSTR_443253 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=36601049;END=36601060;PERIOD=3;NSKIP=0;NFILT=0;DP=24;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:24:0:0:0:12.00|12.00:0|0:.:0:.:0:0|17:0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6061 chr21 36603600 GANGSTR_443254 CAGCCAGCCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36603600;END=36603611;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6062 chr21 36605615 GANGSTR_443255 ATGATGATGATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36605615;END=36605626;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|48:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6063 chr21 36607939 GANGSTR_443256 TGTATGTATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36607939;END=36607950;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6064 chr21 36608728 GANGSTR_443257 TTTTGTTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36608728;END=36608752;PERIOD=5;NSKIP=0;NFILT=0;DP=87;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:87:0:0:0:43.50|43.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6065 chr21 36619660 GANGSTR_443259 TAATAATAATAATAATAATAATAATAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=36619660;END=36619695;PERIOD=3;NSKIP=0;NFILT=0;DP=34;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:34:0:0:0:17.00|17.00:0|0:.:0:.:0:0|13:0|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6066 chr21 36627079 GANGSTR_443260 AAGAAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36627079;END=36627088;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6067 chr21 36633427 GANGSTR_443261 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36633427;END=36633438;PERIOD=4;NSKIP=0;NFILT=0;DP=81;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:81:0:0:0:40.50|40.50:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6068 chr21 36637612 GANGSTR_443262 TGCATGCATGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36637612;END=36637623;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6069 chr21 36638238 GANGSTR_443263 ATAAATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36638238;END=36638253;PERIOD=4;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:0:39.50|39.50:0|0:.:0:.:0:0|47:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6070 chr21 36639988 GANGSTR_443264 TTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36639988;END=36639995;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6071 chr21 36644544 GANGSTR_443265 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36644544;END=36644555;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=3;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:3:3:36.50|36.50:0|0:.:0:.:0:0|42;3|2:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6072 chr21 36647702 GANGSTR_443266 GAATGAATGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36647702;END=36647713;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:1:34.50|34.50:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6073 chr21 36652107 GANGSTR_443267 AACAACAACAACAACAACAACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=36652107;END=36652139;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|24:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6074 chr21 36653393 GANGSTR_443268 TTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36653393;END=36653404;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6075 chr21 36654740 GANGSTR_443269 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=36654740;END=36654781;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-10;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-10|-10:1:1:47:0:0:0:23.50|23.50:0|0:8.24:0:.:0:-10|26:-10|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6076 chr21 36664402 GANGSTR_443270 CATACATGCATACATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36664402;END=36664417;PERIOD=8;NSKIP=0;NFILT=0;DP=87;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:87:0:0:0:43.50|43.50:0|0:.:0:.:0:0|44:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6077 chr21 36667515 GANGSTR_443271 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36667515;END=36667526;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6078 chr21 36670178 GANGSTR_443272 ACACACACACAC ACACACACAC . . INFRAME_PGEOM=0.93;INFRAME_UP=0.06;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36670178;END=36670189;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:50:0:0:0:30.84|19.16:0|0:8.14:-1.41:40:0:-2|12;0|27:-2|10;0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6079 chr21 36672663 GANGSTR_443273 TGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36672663;END=36672677;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:1:1:30.50|30.50:0|0:.:0:.:0:-19|1;0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6080 chr21 36674220 GANGSTR_443274 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36674220;END=36674231;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6081 chr21 36678051 GANGSTR_443275 CCTCCCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36678051;END=36678060;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6082 chr21 36678491 GANGSTR_443276 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36678491;END=36678502;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6083 chr21 36681561 GANGSTR_443277 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36681561;END=36681572;PERIOD=4;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:0:38.50|38.50:0|0:.:0:.:0:0|57:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6084 chr21 36685393 GANGSTR_443278 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36685393;END=36685404;PERIOD=3;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|52:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6085 chr21 36686067 GANGSTR_443279 TCTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36686067;END=36686074;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6086 chr21 36693651 GANGSTR_443280 GAGGGGAGGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36693651;END=36693665;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6087 chr21 36706137 GANGSTR_443281 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36706137;END=36706148;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6088 chr21 36706346 GANGSTR_443282 AGCATAGCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36706346;END=36706355;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6089 chr21 36709212 GANGSTR_443283 TTGTTTTGTTTTGTTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36709212;END=36709231;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6090 chr21 36711502 GANGSTR_443284 TGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36711502;END=36711519;PERIOD=2;NSKIP=0;NFILT=0;DP=81;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:81:0:3:0:40.50|40.50:0|0:.:0:.:0:-2|2;0|53:-2|2;0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6091 chr21 36717360 GANGSTR_443285 AGAAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36717360;END=36717369;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6092 chr21 36731595 GANGSTR_443287 ACAGCACAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36731595;END=36731604;PERIOD=5;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6093 chr21 36731714 GANGSTR_443288 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36731714;END=36731728;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6094 chr21 36734280 GANGSTR_443289 TTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36734280;END=36734289;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6095 chr21 36736200 GANGSTR_443290 ACCCACCCACCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36736200;END=36736211;PERIOD=4;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:2:19.50|19.50:0|0:.:0:.:0:0|34:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6096 chr21 36737197 GANGSTR_443291 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36737197;END=36737208;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:1:36.50|36.50:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6097 chr21 36737820 GANGSTR_443292 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36737820;END=36737831;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:-19|1;0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6098 chr21 36739844 GANGSTR_443293 CAATAACAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36739844;END=36739855;PERIOD=6;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|41:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6099 chr21 36742421 GANGSTR_443294 TTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36742421;END=36742436;PERIOD=4;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:0:39.50|39.50:0|0:.:0:.:0:0|53:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6100 chr21 36743132 GANGSTR_443295 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36743132;END=36743143;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6101 chr21 36752596 GANGSTR_443296 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36752596;END=36752607;PERIOD=3;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:0:0:40.00|40.00:0|0:.:0:.:0:0|54:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6102 chr21 36759023 GANGSTR_443297 GGCTGGCTGGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36759023;END=36759034;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6103 chr21 36760789 GANGSTR_443298 TCTCCTTCTCCTTCTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36760789;END=36760806;PERIOD=6;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|34:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6104 chr21 36761981 GANGSTR_443299 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36761981;END=36761992;PERIOD=3;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|46:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6105 chr21 36767926 GANGSTR_443301 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=36767926;END=36767937;PERIOD=2;NSKIP=0;NFILT=0;DP=13;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:13:0:0:0:6.50|6.50:0|0:.:0:.:0:0|10:0|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6106 chr21 36769000 GANGSTR_443302 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36769000;END=36769011;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6107 chr21 36770043 GANGSTR_443303 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36770043;END=36770057;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6108 chr21 36770119 GANGSTR_443304 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36770119;END=36770130;PERIOD=2;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|44:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6109 chr21 36774637 GANGSTR_443305 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36774637;END=36774648;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6110 chr21 36777131 GANGSTR_443307 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36777131;END=36777142;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|44:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6111 chr21 36782008 GANGSTR_443308 GCGCGCACACACACACACACACACA GCGCGCACACACACACACACACACACA,GTGCGCACACACACACACACACACACA . . INFRAME_PGEOM=0.98;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36782013;END=36782032;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2,2;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:2|2:1:0.5:52:0:0:0:27.49|24.51:0|0:25.75:-0.12:41:-0.45:0|19;2|17:2|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6112 chr21 36783497 GANGSTR_443309 CACTCCCCACTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36783497;END=36783510;PERIOD=7;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6113 chr21 36786678 GANGSTR_443310 ATATACATATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36786678;END=36786689;PERIOD=6;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|41:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6114 chr21 36797379 GANGSTR_443311 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36797379;END=36797390;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6115 chr21 36797457 GANGSTR_443312 TTGTTGTTGTTGTTGTTGTTT TTGTTGTTGTTGTTGTTGTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36797457;END=36797474;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:68:0:0:0:34.00|34.00:0|0:15.95:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6116 chr21 36806585 GANGSTR_443313 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36806585;END=36806596;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|29:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6117 chr21 36809110 GANGSTR_443315 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36809110;END=36809121;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:2:38.16|35.84:0|0:.:0:.:0:0|54:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6118 chr21 36810119 GANGSTR_443316 AACAAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36810119;END=36810128;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6119 chr21 36815455 GANGSTR_443317 CATTCATTCATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36815455;END=36815474;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6120 chr21 36819314 GANGSTR_443319 ATCCATCCATCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36819314;END=36819325;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:-9|1;0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6121 chr21 36827655 GANGSTR_443320 ACATACATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36827655;END=36827666;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6122 chr21 36829825 GANGSTR_443321 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36829825;END=36829836;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6123 chr21 36835268 GANGSTR_443322 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36835268;END=36835282;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6124 chr21 36839863 GANGSTR_443323 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36839863;END=36839877;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:1:35.00|35.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6125 chr21 36841980 GANGSTR_443324 ATTGCTATTGCTATTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36841980;END=36841997;PERIOD=6;NSKIP=0;NFILT=0;DP=84;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:84:0:0:0:42.00|42.00:0|0:.:0:.:0:0|52:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6126 chr21 36842416 GANGSTR_443325 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36842416;END=36842427;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|38:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6127 chr21 36845280 GANGSTR_443326 CTGTCTCTGTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36845280;END=36845291;PERIOD=6;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:27.99|38.01:0|0:.:0:.:0:0|44:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6128 chr21 36846201 GANGSTR_443327 ATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=36846201;END=36846209;PERIOD=3;NSKIP=0;NFILT=0;DP=34;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:34:0:0:0:17.00|17.00:0|0:.:0:.:0:0|22:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6129 chr21 36846774 GANGSTR_443328 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36846774;END=36846785;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6130 chr21 36847044 GANGSTR_443329 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36847044;END=36847055;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|42:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6131 chr21 36853123 GANGSTR_443330 TATATATATATATA TATATATATATATATA . . INFRAME_PGEOM=0.98;INFRAME_UP=0.03;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36853123;END=36853136;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=50;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:50:0:1:0:28.47|21.53:0|0:10.72:-0.93:41:-0.94:-2|2;-1|1;0|24;2|13:-2|1;0|23;2|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6132 chr21 36853682 GANGSTR_443331 TGAGTGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36853682;END=36853689;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6133 chr21 36859156 GANGSTR_443332 CCTCCTCCTCCT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=36859156;END=36859167;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:2:1:31.50|31.50:0|0:.:0:.:0:-3|1;-1|1;0|45:-6|1;-3|1;0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6134 chr21 36862648 GANGSTR_443333 AAGAAGAAGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36862648;END=36862659;PERIOD=3;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6135 chr21 36866054 GANGSTR_443334 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36866054;END=36866065;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6136 chr21 36871554 GANGSTR_443335 AGGCAGGCAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36871554;END=36871565;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6137 chr21 36874172 GANGSTR_443336 TTCCCTTCCCTTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36874172;END=36874186;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6138 chr21 36879457 GANGSTR_443337 CACACACACACACACACACACACACACACACACACACACACACACACA CACACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACACA . . INFRAME_PGEOM=0.99;INFRAME_UP=0.26;INFRAME_DOWN=0.18;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=36879457;END=36879504;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-12,-10;DP=62;DSNP=0;DSTUTTER=4;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-12|-10:0.71:0.35:62:0:4:1:33.76|28.24:0|0:0.38:-0.55:31:-0.97:-14|4;-12|13;-10|9;-8|1:-14|3;-12|12;-10|8;-8|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6139 chr21 36881654 GANGSTR_443338 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36881654;END=36881665;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6140 chr21 36885491 GANGSTR_443339 TTTGATTTTGATTTTGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36885491;END=36885508;PERIOD=6;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|35:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6141 chr21 36898242 GANGSTR_443341 TAAGATTAAGATTAAGATTAAGAT TAAGATTAAGATTAGATTAAGAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.97;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=36898242;END=36898265;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:46:0:0:0:23.49|22.51:0|0:235.27:0:43:-0.12:-1|11;0|13:-1|11;0|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6142 chr21 36905034 GANGSTR_443342 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36905034;END=36905045;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6143 chr21 36906384 GANGSTR_443343 TGGAATGCTGGAATGCTGGAATGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36906384;END=36906407;PERIOD=8;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|33:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6144 chr21 36922696 GANGSTR_443344 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36922696;END=36922707;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6145 chr21 36922777 GANGSTR_443345 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36922777;END=36922788;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6146 chr21 36924549 GANGSTR_443346 ACATACATACAT ACATACATACGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36924549;END=36924560;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:61:0:0:0:34.48|26.52:0|0:87.08:-0.46:56:-0.1:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6147 chr21 36934164 GANGSTR_443347 GGAGGGAGGGAGGGAGGGAGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=36934164;END=36934187;PERIOD=4;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|21:0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6148 chr21 36947548 GANGSTR_443348 CCCTCCCTCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36947548;END=36947559;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6149 chr21 36950659 GANGSTR_443349 TTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36950659;END=36950667;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|49:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6150 chr21 36957104 GANGSTR_443350 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36957104;END=36957115;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6151 chr21 36958984 GANGSTR_443351 TTGACCTTGACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36958984;END=36958995;PERIOD=6;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|40:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6152 chr21 36963130 GANGSTR_443352 ATATATATATAT ATATATATAGAG,ATATATATATAG . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36963130;END=36963141;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0,0;DP=61;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:0|0:1:0.5:61:0:1:0:27.56|33.44:0|0:76.43:-0.31:52:-1.03:0|41;2|1:0|39;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6153 chr21 36967912 GANGSTR_443353 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36967912;END=36967923;PERIOD=4;NSKIP=0;NFILT=0;DP=82;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:82:0:0:1:41.00|41.00:0|0:.:0:.:0:0|58:0|57:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6154 chr21 36969575 GANGSTR_443354 TGCTGCTGCTGCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36969575;END=36969589;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6155 chr21 36972002 GANGSTR_443355 GAGGAGGAGGAGGAGGAG GAGGAGGAGGAGGAGGAGGAG . . INFRAME_PGEOM=0.98;INFRAME_UP=0.05;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36972002;END=36972019;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=3;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|3:1:0.5:61:0:0:0:27.76|33.24:0|0:12.94:-0.34:46:-0.12:-1|3;0|20;1|1;3|22:0|18;3|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6156 chr21 36974788 GANGSTR_443356 CATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36974788;END=36974795;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6157 chr21 36977483 GANGSTR_443357 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36977483;END=36977492;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6158 chr21 36978769 GANGSTR_443358 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36978769;END=36978780;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6159 chr21 36982350 GANGSTR_443359 TATATATATATATATATATATATA TATATATATATATATATATATA . . INFRAME_PGEOM=0.6;INFRAME_UP=0.19;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=36982350;END=36982373;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=36;DSNP=0;DSTUTTER=4;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:36:0:4:1:18.00|18.00:0|0:3.9:0:.:0:-4|1;-2|17;0|1;2|2;4|1:-4|1;-2|14;2|2;4|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6160 chr21 36991123 GANGSTR_443360 AAAATAAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=36991123;END=36991142;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:32.50|29.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6161 chr21 36996096 GANGSTR_443361 CTTACAACTTACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=36996096;END=36996109;PERIOD=7;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|32:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6162 chr21 37000205 GANGSTR_443362 TAAAATAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37000205;END=37000214;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6163 chr21 37001042 GANGSTR_443363 ATAAATAAATAAAG ATAAATAAATAAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37001042;END=37001053;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:66:0:0:0:33.00|33.00:0|0:18.35:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6164 chr21 37005767 GANGSTR_443364 ATTTAATTAATTAATTAA ACTTAATTAATTAATTAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37005769;END=37005784;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:60:0:0:0:30.00|30.00:0|0:17.16:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6165 chr21 37006890 GANGSTR_443365 AATCAATCAATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37006890;END=37006901;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6166 chr21 37018908 GANGSTR_443366 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=37018908;END=37018919;PERIOD=3;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|63:0|62:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6167 chr21 37022472 GANGSTR_443367 AAATAAATAAATAAATAAATAAAT AAATAAATAAATAAATAAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37022472;END=37022495;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:54:0:0:0:27.00|27.00:0|0:7.94:0:.:0:-4|27:-4|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6168 chr21 37026480 GANGSTR_443369 AGACATCACACACACACACACACACACACACACACACACACACACACA ATACATCACACACACACACACACACACACACACACACACACACA . . INFRAME_PGEOM=0.94;INFRAME_UP=0.04;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=37026486;END=37026527;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=68;DSNP=0;DSTUTTER=5;DFLANKINDEL=2;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:68:0:5:2:34.00|34.00:0|0:15.02:0:.:0:-8|1;-6|3;-4|26;-2|1:-6|4;-4|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6169 chr21 37035416 GANGSTR_443370 AAGAAAGAAAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37035416;END=37035431;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6170 chr21 37042050 GANGSTR_443371 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37042050;END=37042061;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6171 chr21 37053066 GANGSTR_443372 TCATTTTCATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37053066;END=37053077;PERIOD=6;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|49:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6172 chr21 37054635 GANGSTR_443373 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37054635;END=37054649;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6173 chr21 37058286 GANGSTR_443374 AAATTAAATTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37058286;END=37058300;PERIOD=5;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6174 chr21 37058396 GANGSTR_443375 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37058396;END=37058407;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6175 chr21 37064256 GANGSTR_443376 TTTCTTTCTTTCTTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37064256;END=37064279;PERIOD=4;NSKIP=0;NFILT=0;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:78:0:0:1:39.00|39.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6176 chr21 37064391 GANGSTR_443377 TCTCTCTCTCTCTCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.99;INFRAME_UP=0.02;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37064391;END=37064416;PERIOD=2;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:3:0:36.50|36.50:0|0:.:0:.:0:-2|3;0|33:-2|3;0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6177 chr21 37072038 GANGSTR_443378 ACACACACACACACACACACACACACACACACACACACC ACACACACACACACACACACACACACACACA,ACACACACACACACACACACACACACACACACCCC . . INFRAME_PGEOM=0.98;INFRAME_UP=0.07;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37072038;END=37072075;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-8,-4;DP=58;DSNP=0;DSTUTTER=5;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-8|-4:1:0.5:58:0:5:0:32.12|25.88:0|0:90.01:-0.32:50:-0.11:-23|1;-10|3;-8|18;-6|1;-4|10;-2|1:-10|3;-8|18;-6|1;-4|11;-2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6178 chr21 37074096 GANGSTR_443379 TTTTGTTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=37074096;END=37074120;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6179 chr21 37078366 GANGSTR_443381 CTGGCCCTGGCCCTGGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37078366;END=37078383;PERIOD=6;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6180 chr21 37080549 GANGSTR_443382 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.9;INFRAME_UP=0.06;INFRAME_DOWN=0.13;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37080549;END=37080588;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=76;DSNP=0;DSTUTTER=7;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-6:1:0.5:76:0:7:1:36.31|39.69:0|0:41.88:0:47:-0.87:-20|1;-8|4;-6|17;-4|1;-2|1;0|16;2|1:-8|4;-6|15;-4|1;-2|1;0|13;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6181 chr21 37081938 GANGSTR_443383 TTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37081938;END=37081945;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|50:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6182 chr21 37087024 GANGSTR_443384 TGAGGTGAGGTGAGGTGAGG TGAGGTGAGGTGAGGTGAGGTGAGGTGAGG . . INFRAME_PGEOM=0.93;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37087024;END=37087043;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=10;DP=61;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|10:1:0.5:61:0:1:0:33.01|27.99:0|0:43.14:-0.23:53:0:-3|1;-1|4;0|22;5|1;10|12:0|22;5|1;10|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6183 chr21 37100629 GANGSTR_443385 ATATATATATAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37100629;END=37100640;PERIOD=2;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:2:0:34.50|34.50:0|0:.:0:.:0:-2|1;0|50:-2|1;0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6184 chr21 37104429 GANGSTR_443386 TAGTAGTAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37104429;END=37104437;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6185 chr21 37105929 GANGSTR_443387 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37105929;END=37105944;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6186 chr21 37108188 GANGSTR_443388 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37108188;END=37108203;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6187 chr21 37117259 GANGSTR_443390 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37117259;END=37117270;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6188 chr21 37118338 GANGSTR_443391 TTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=37118338;END=37118357;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|23:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6189 chr21 37119390 GANGSTR_443392 ATGAGATGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37119390;END=37119399;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6190 chr21 37120027 GANGSTR_443393 GAAGAAGAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37120027;END=37120038;PERIOD=3;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|56:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6191 chr21 37121636 GANGSTR_443394 TAAATAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37121636;END=37121651;PERIOD=4;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:0:38.50|38.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6192 chr21 37122521 GANGSTR_443395 TTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37122521;END=37122540;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6193 chr21 37131221 GANGSTR_443396 TAAATTAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37131221;END=37131230;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6194 chr21 37135768 GANGSTR_443397 TTATTTTATTTTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37135768;END=37135787;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6195 chr21 37138485 GANGSTR_443398 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37138485;END=37138500;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6196 chr21 37150455 GANGSTR_443399 TGGTGGTGGTGGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37150455;END=37150469;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6197 chr21 37159176 GANGSTR_443400 TTATTTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37159176;END=37159195;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6198 chr21 37192940 GANGSTR_443401 TGTGTGTGTGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37192940;END=37192967;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:1:1:30.00|30.00:0|0:.:0:.:0:-4|1;0|33:-4|1;0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6199 chr21 37195450 GANGSTR_443402 TAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37195450;END=37195457;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6200 chr21 37197159 GANGSTR_443403 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37197159;END=37197170;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6201 chr21 37204035 GANGSTR_443404 CTCTCTCTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37204035;END=37204052;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:1:24.50|24.50:0|0:.:0:.:0:0|33:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6202 chr21 37206460 GANGSTR_443405 CTGAGCTGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37206460;END=37206469;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6203 chr21 37207407 GANGSTR_443406 TAGATAGATAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37207407;END=37207418;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|54:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6204 chr21 37207632 GANGSTR_443407 AGAGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37207632;END=37207645;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|41:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6205 chr21 37208138 GANGSTR_443408 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37208138;END=37208149;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:1:26.50|24.50:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6206 chr21 37216459 GANGSTR_443410 CACACACACACA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37216459;END=37216470;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:1:0:32.50|32.50:0|0:.:0:.:0:-2|1;0|48:-2|1;0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6207 chr21 37235340 GANGSTR_443412 CACACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37235340;END=37235353;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6208 chr21 37236811 GANGSTR_443413 CAGACAGACAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37236811;END=37236822;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6209 chr21 37238267 GANGSTR_443414 AGTGAGTGAGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37238267;END=37238278;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6210 chr21 37245668 GANGSTR_443415 AAAGAAAAGAAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37245668;END=37245682;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6211 chr21 37249838 GANGSTR_443416 ATTAATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37249838;END=37249849;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6212 chr21 37257871 GANGSTR_443418 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37257871;END=37257882;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|49:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6213 chr21 37258106 GANGSTR_443419 AATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37258106;END=37258113;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6214 chr21 37270909 GANGSTR_443420 AATAAATA AATAAAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37270909;END=37270916;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:58:0:0:0:29.00|29.00:0|0:15.95:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6215 chr21 37271777 GANGSTR_443421 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37271777;END=37271792;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|43:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6216 chr21 37273968 GANGSTR_443422 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37273968;END=37273983;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6217 chr21 37276184 GANGSTR_443423 ATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=37276184;END=37276197;PERIOD=2;NSKIP=0;NFILT=0;DP=31;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:31:0:0:0:15.50|15.50:0|0:.:0:.:0:0|21:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6218 chr21 37276427 GANGSTR_443424 TGTGTGTGTGTGTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37276427;END=37276440;PERIOD=2;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:1:0:21.50|21.50:0|0:.:0:.:0:-2|1;0|35:-2|1;0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6219 chr21 37283158 GANGSTR_443425 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37283158;END=37283169;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|50:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6220 chr21 37283721 GANGSTR_443426 GTCTGTCTGTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37283721;END=37283732;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:1:25.50|25.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6221 chr21 37289107 GANGSTR_443427 AATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37289107;END=37289112;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6222 chr21 37289630 GANGSTR_443428 AATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37289630;END=37289639;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6223 chr21 37290099 GANGSTR_443429 ATATATATATATATATATATATAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.09;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=37290099;END=37290122;PERIOD=2;NSKIP=0;NFILT=0;DP=35;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:1:1:17.50|17.50:0|0:.:0:.:0:0|18;2|1:0|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6224 chr21 37292463 GANGSTR_443430 TATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37292463;END=37292471;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|48:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6225 chr21 37293686 GANGSTR_443431 TAATAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37293686;END=37293700;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6226 chr21 37306011 GANGSTR_443433 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37306011;END=37306022;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:2:28.00|28.00:0|0:.:0:.:0:0|45;1|1;2|1:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6227 chr21 37314556 GANGSTR_443434 CACACACACACACA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37314556;END=37314569;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:1:0:27.00|27.00:0|0:.:0:.:0:-2|1;0|40:-2|1;0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6228 chr21 37314869 GANGSTR_443435 CACACACACACACACA CACACACACACA . . INFRAME_PGEOM=0.91;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37314869;END=37314884;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:57:0:0:0:32.43|24.57:0|0:36.63:-0.52:46:0:-4|17;0|22:-4|17;0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6229 chr21 37319239 GANGSTR_443436 TTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37319239;END=37319253;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|36:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6230 chr21 37321782 GANGSTR_443437 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37321782;END=37321793;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6231 chr21 37331582 GANGSTR_443439 TTGTTGTTGTTGTTG TTGTTGTTTTTGTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37331582;END=37331596;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:57:0:0:0:29.03|27.97:0|0:85.52:0:49:-0.11:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6232 chr21 37332146 GANGSTR_443440 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37332146;END=37332161;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:29.00|39.00:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6233 chr21 37334000 GANGSTR_443441 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37334000;END=37334014;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6234 chr21 37337167 GANGSTR_443442 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37337167;END=37337178;PERIOD=3;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:1:35.00|35.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6235 chr21 37340407 GANGSTR_443444 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37340407;END=37340418;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.00|32.00:0|0:.:0:.:0:0|38:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6236 chr21 37345202 GANGSTR_443445 ATCTATCTATCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37345202;END=37345213;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6237 chr21 37346977 GANGSTR_443446 TAAAATAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37346977;END=37346986;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6238 chr21 37347118 GANGSTR_443447 CCCCACCCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37347118;END=37347127;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6239 chr21 37348268 GANGSTR_443448 AATGAATGAATGAATGAATGAATG AATGAATGAATGAATGAATG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37348268;END=37348291;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:78:0:0:0:42.84|35.16:0|0:16.58:-0.57:53:-0.1:-4|21;0|29:-4|21;0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6240 chr21 37349200 GANGSTR_443449 GGGAGGGAGGCAA GGGAGGGAGGCAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37349200;END=37349207;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:41:0:0:0:17.08|23.92:0|0:49.73:-0.49:37:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6241 chr21 37350749 GANGSTR_443450 GTTTTGGTTTTGGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37350749;END=37350766;PERIOD=6;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|28:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6242 chr21 37365107 GANGSTR_443451 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37365107;END=37365118;PERIOD=2;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|29:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6243 chr21 37368311 GANGSTR_443452 TTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37368311;END=37368318;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6244 chr21 37374762 GANGSTR_443453 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37374762;END=37374776;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:25.02|18.98:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6245 chr21 37374887 GANGSTR_443454 AAATAAAATAAAATAAAATAAAATAAAATAAAATA AAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.14;OUTFRAME_DOWN=0.07;START=37374887;END=37374921;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=15;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|15:1:0.5:37:0:0:0:21.00|16.00:0|0:23.06:-0.34:29:0:-23|1;-5|1;0|9;1|2;6|2;11|1;15|1:0|9;15|2:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6246 chr21 37375956 GANGSTR_443455 TTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.03;START=37375956;END=37375963;PERIOD=4;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:2:19.50|19.50:0|0:.:0:.:0:0|32;1|1:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6247 chr21 37387815 GANGSTR_443456 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37387815;END=37387826;PERIOD=3;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:0:19.50|19.50:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6248 chr21 37389342 GANGSTR_443457 CAAAAACAAAAACAAAAACAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=37389342;END=37389365;PERIOD=6;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|19:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6249 chr21 37392730 GANGSTR_443458 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37392730;END=37392744;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6250 chr21 37397058 GANGSTR_443459 GACTGACTGACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37397058;END=37397069;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:1:1:31.50|31.50:0|0:.:0:.:0:0|45;2|1:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6251 chr21 37397812 GANGSTR_443460 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37397812;END=37397823;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6252 chr21 37398798 GANGSTR_443461 CAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37398798;END=37398812;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6253 chr21 37406011 GANGSTR_443462 AAGAAAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37406011;END=37406022;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6254 chr21 37410325 GANGSTR_443464 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37410325;END=37410336;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6255 chr21 37410760 GANGSTR_443465 GAGGAGGAGGAGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37410760;END=37410774;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6256 chr21 37412798 GANGSTR_443466 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37412798;END=37412809;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6257 chr21 37417582 GANGSTR_443467 GAAGGAAGGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37417582;END=37417593;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6258 chr21 37418444 GANGSTR_443468 TTCCTTCCTTCCTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37418444;END=37418459;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6259 chr21 37423712 GANGSTR_443469 CTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37423712;END=37423723;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6260 chr21 37431021 GANGSTR_443470 AAAGAAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37431021;END=37431036;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6261 chr21 37431682 GANGSTR_443471 AAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37431682;END=37431689;PERIOD=4;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:1:39.50|39.50:0|0:.:0:.:0:0|55:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6262 chr21 37435109 GANGSTR_443472 AAAACAAAACAAAACAAAAC AAAACAAAACAAAACAAAACAAAAC . . INFRAME_PGEOM=0.98;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37435109;END=37435128;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=5;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|5:1:0.5:70:0:0:0:31.79|38.21:0|0:10.26:-0.44:43:-0.27:-12|4;-7|3;-5|1;0|16;5|16:0|16;5|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6263 chr21 37443910 GANGSTR_443473 CCACCCACCCAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37443910;END=37443921;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:1:20.00|20.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6264 chr21 37448313 GANGSTR_443474 AACAACAACAAC AACAACAACAACAAC . . INFRAME_PGEOM=0.96;INFRAME_UP=0.03;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37448313;END=37448324;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=3;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|3:1:0.5:68:0:0:0:34.12|33.88:0|0:23.43:-0:57:0:0|31;3|23:0|26;3|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6265 chr21 37449210 GANGSTR_443475 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37449210;END=37449221;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6266 chr21 37456315 GANGSTR_443476 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37456315;END=37456326;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:32.62|33.38:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6267 chr21 37461161 GANGSTR_443477 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37461161;END=37461180;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6268 chr21 37462759 GANGSTR_443478 TTTATTTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37462759;END=37462778;PERIOD=5;NSKIP=0;NFILT=0;DP=81;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:81:0:0:0:40.50|40.50:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6269 chr21 37463553 GANGSTR_443479 AAAATAATAATAATAAT ATAATAATAATAATAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37463555;END=37463569;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:54:0:0:2:24.08|29.92:0|0:59.96:-0.35:44:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6270 chr21 37469617 GANGSTR_443481 CTGCCTGCCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37469617;END=37469628;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:1:24.00|24.00:0|0:.:0:.:0:-9|1;0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6271 chr21 37470365 GANGSTR_443482 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37470365;END=37470376;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:27.00|30.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6272 chr21 37481710 GANGSTR_443483 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37481710;END=37481721;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6273 chr21 37489254 GANGSTR_443486 ATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37489254;END=37489268;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:41.50|30.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6274 chr21 37491959 GANGSTR_443487 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37491959;END=37491970;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6275 chr21 37493493 GANGSTR_443488 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37493493;END=37493504;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|37:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6276 chr21 37501182 GANGSTR_443491 GTTTTGTTTTGTTTTGTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37501182;END=37501201;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6277 chr21 37502264 GANGSTR_443492 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37502264;END=37502275;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:1:24.00|24.00:0|0:.:0:.:0:0|32;24|1:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6278 chr21 37502726 GANGSTR_443493 GCCGCCGCCGCCGCCGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37502726;END=37502743;PERIOD=3;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:25.98|18.02:0|0:.:0:.:0:0|27:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6279 chr21 37504052 GANGSTR_443494 ACAAACAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37504052;END=37504063;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:2:26.00|26.00:0|0:.:0:.:0:0|40;1|1:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6280 chr21 37504473 GANGSTR_443495 AGAGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37504473;END=37504486;PERIOD=2;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6281 chr21 37505586 GANGSTR_443496 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37505586;END=37505600;PERIOD=5;NSKIP=0;NFILT=0;DP=81;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:81:0:0:0:40.50|40.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6282 chr21 37510402 GANGSTR_443497 TTTAGTTTAGTTTAGTTTAGTTTAGTTTAGTTTT TTTAGTTTAGTTTAGTTTAGTTTAGTTTAGTTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37510402;END=37510431;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:66:0:0:1:30.48|35.52:0|0:76.48:-0.24:51:-0.25:0|27:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6283 chr21 37512144 GANGSTR_443498 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37512144;END=37512155;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6284 chr21 37514182 GANGSTR_443499 TTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37514182;END=37514189;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:28.50|37.50:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6285 chr21 37515103 GANGSTR_443500 ATACATACATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37515103;END=37515114;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:30.00|32.00:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6286 chr21 37516754 GANGSTR_443501 ACAAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37516754;END=37516763;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6287 chr21 37516925 GANGSTR_443502 ACAAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=37516925;END=37516934;PERIOD=5;NSKIP=0;NFILT=0;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:36:0:0:1:25.50|10.50:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6288 chr21 37517096 GANGSTR_443503 ACAAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=37517096;END=37517105;PERIOD=5;NSKIP=0;NFILT=0;DP=34;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:34:0:0:0:17.00|17.00:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6289 chr21 37518849 GANGSTR_443504 GGAATGAATGAATGAAT GAAATGAATGAATGAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37518850;END=37518865;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:46:0:0:0:19.00|27.00:0|0:57.37:-0.55:42:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6290 chr21 37528747 GANGSTR_443507 CAGCCCAGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=37528747;END=37528756;PERIOD=5;NSKIP=0;NFILT=0;DP=30;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:30:0:0:0:15.00|15.00:0|0:.:0:.:0:0|21:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6291 chr21 37530257 GANGSTR_443508 ATTATTATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37530257;END=37530277;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|35:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6292 chr21 37531445 GANGSTR_443509 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37531445;END=37531459;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6293 chr21 37532430 GANGSTR_443510 AATAATAATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37532430;END=37532450;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6294 chr21 37533810 GANGSTR_443511 TGTTGTTGTTGTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37533810;END=37533824;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|28:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6295 chr21 37547400 GANGSTR_443512 TTCTTCTTCTTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.03;START=37547400;END=37547414;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:1:25.50|25.50:0|0:.:0:.:0:0|29;1|1:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6296 chr21 37551258 GANGSTR_443513 CTCCCTCCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37551258;END=37551269;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6297 chr21 37552032 GANGSTR_443514 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37552032;END=37552043;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|45:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6298 chr21 37562624 GANGSTR_443515 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37562624;END=37562635;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|45:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6299 chr21 37574129 GANGSTR_443517 TGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37574129;END=37574148;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:1:0:25.00|25.00:0|0:.:0:.:0:-2|1;0|35:-2|1;0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6300 chr21 37593872 GANGSTR_443519 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37593872;END=37593887;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6301 chr21 37594174 GANGSTR_443520 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37594174;END=37594185;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|37;1|1:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6302 chr21 37606156 GANGSTR_443522 TTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37606156;END=37606170;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6303 chr21 37610166 GANGSTR_443523 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37610166;END=37610181;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6304 chr21 37612188 GANGSTR_443524 TGCTGCTGCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37612188;END=37612199;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6305 chr21 37612786 GANGSTR_443525 ATAAATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37612786;END=37612801;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6306 chr21 37613194 GANGSTR_443526 CATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37613194;END=37613205;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6307 chr21 37614450 GANGSTR_443527 ATTATTATTATTATTATTATTATTATTATTATTATTATT ATTATTGTTATTATTATTATTATTATTATTATTATTATT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=37614450;END=37614488;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:44:0:0:0:22.00|22.00:0|0:7.5:0:.:0:0|12:0|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6308 chr21 37618099 GANGSTR_443528 ACCTCAACCTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37618099;END=37618110;PERIOD=6;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|34:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6309 chr21 37619142 GANGSTR_443529 TTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATG TTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=37619142;END=37619191;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-10;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-10|-10:1:1:66:0:0:0:33.00|33.00:0|0:7.14:0:.:0:-10|19;-9|1:-10|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6310 chr21 37622762 GANGSTR_443530 GGCCTGGCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37622762;END=37622771;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6311 chr21 37627422 GANGSTR_443531 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37627422;END=37627436;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6312 chr21 37629155 GANGSTR_443532 AGCAAGCAAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37629155;END=37629166;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6313 chr21 37631084 GANGSTR_443533 AGAGAAGAGAAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37631084;END=37631098;PERIOD=5;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:0:39.50|39.50:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6314 chr21 37638469 GANGSTR_443534 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37638469;END=37638484;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6315 chr21 37642546 GANGSTR_443535 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37642546;END=37642557;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6316 chr21 37645403 GANGSTR_443537 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37645403;END=37645414;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6317 chr21 37646376 GANGSTR_443538 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37646376;END=37646387;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6318 chr21 37647133 GANGSTR_443539 TTGTTGTTGTTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37647133;END=37647144;PERIOD=3;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:1:1:21.00|21.00:0|0:.:0:.:0:-3|1;0|28:-3|1;0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6319 chr21 37651732 GANGSTR_443540 AGAAAGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37651732;END=37651747;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6320 chr21 37652177 GANGSTR_443541 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37652177;END=37652188;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6321 chr21 37655267 GANGSTR_443542 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37655267;END=37655282;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6322 chr21 37657359 GANGSTR_443543 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=37657359;END=37657370;PERIOD=3;NSKIP=0;NFILT=0;DP=33;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:33:0:0:0:16.50|16.50:0|0:.:0:.:0:0|20:0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6323 chr21 37658938 GANGSTR_443544 ACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.98;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37658938;END=37658971;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=50;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:50:0:1:0:25.00|25.00:0|0:7.47:0:.:0:-4|1;-2|25;0|2:-4|1;-2|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6324 chr21 37659289 GANGSTR_443545 TACTAATGTACTAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37659289;END=37659304;PERIOD=8;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:2:32.00|32.00:0|0:.:0:.:0:0|39:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6325 chr21 37660949 GANGSTR_443546 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37660949;END=37660960;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6326 chr21 37661723 GANGSTR_443547 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=37661723;END=37661772;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-8,2;DP=53;DSNP=0;DSTUTTER=4;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-8|2:1:0.5:53:0:4:2:24.99|28.01:0|0:11.23:-0.07:28:-0.15:-10|1;-8|12;-7|1;-2|1;0|1;2|9:-10|1;-8|11;-2|1;0|1;2|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6327 chr21 37662432 GANGSTR_443548 TGTATGTATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37662432;END=37662443;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|51:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6328 chr21 37664539 GANGSTR_443549 CTTTTCTTTTCTTTTCTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=37664539;END=37664558;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:5:32.50|32.50:0|0:.:0:.:0:-2|1;-1|1;0|36;1|1:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6329 chr21 37664722 GANGSTR_443550 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37664722;END=37664736;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6330 chr21 37667097 GANGSTR_443551 TTCTTTTCTTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37667097;END=37667111;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6331 chr21 37668050 GANGSTR_443552 CGCCGCCGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37668050;END=37668058;PERIOD=3;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:1:19.00|19.00:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6332 chr21 37669132 GANGSTR_443553 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37669132;END=37669143;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6333 chr21 37671687 GANGSTR_443554 TCCTCCTCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37671687;END=37671698;PERIOD=3;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:1:24.00|24.00:0|0:.:0:.:0:0|36:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6334 chr21 37672673 GANGSTR_443555 TTTTATTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37672673;END=37672692;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6335 chr21 37673685 GANGSTR_443556 AAATAAATAAATAAATAAATA AAATAAATAAATAAATAAAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37673685;END=37673704;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:62:0:0:1:31.00|31.00:0|0:14.72:0:.:0:-4|2;0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6336 chr21 37675740 GANGSTR_443557 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37675740;END=37675755;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|26:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6337 chr21 37680515 GANGSTR_443558 AAATAAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=37680515;END=37680538;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|23:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6338 chr21 37681172 GANGSTR_443559 TTTATTTATTTATTTATTTATTTATTTATTTA TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTA . . INFRAME_PGEOM=0.6;INFRAME_UP=0.1;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=37681172;END=37681203;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=12;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|12:1:0.5:46:0:0:0:27.51|18.49:0|0:3.11:-1.2:19:-0.47:0|15;11|1;12|3:0|14;12|3:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6339 chr21 37683616 GANGSTR_443560 TTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37683616;END=37683630;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:2:28.50|28.50:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6340 chr21 37691728 GANGSTR_443562 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37691728;END=37691739;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:1:24.50|24.50:0|0:.:0:.:0:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6341 chr21 37694667 GANGSTR_443563 TTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37694667;END=37694681;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6342 chr21 37698820 GANGSTR_443564 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37698820;END=37698831;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6343 chr21 37701253 GANGSTR_443565 AACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37701253;END=37701261;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6344 chr21 37709844 GANGSTR_443567 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37709844;END=37709855;PERIOD=3;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:1:21.50|21.50:0|0:.:0:.:0:-16|1;0|26:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6345 chr21 37709964 GANGSTR_443568 TATTTATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=37709964;END=37709983;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:1:20.50|20.50:0|0:.:0:.:0:0|22:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6346 chr21 37714018 GANGSTR_443570 CACACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37714018;END=37714031;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6347 chr21 37714539 GANGSTR_443571 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37714539;END=37714550;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6348 chr21 37716156 GANGSTR_443573 TATTAGTAATAGTAATAGTAA TGTTAGTAATAGTAATAGTAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37716159;END=37716176;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=0;DP=58;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:58:0:1:0:33.50|24.50:0|0:74.97:-0.58:51:-0.11:0|39:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6349 chr21 37719106 GANGSTR_443575 CAAACAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37719106;END=37719125;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6350 chr21 37720694 GANGSTR_443576 TCTTTTCTTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37720694;END=37720708;PERIOD=5;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6351 chr21 37730013 GANGSTR_443578 TTGGTTGGTTGGTTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.98;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=37730013;END=37730028;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:5:27.43|23.57:0|0:.:0:.:0:-1|1;0|33;1|1:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6352 chr21 37730896 GANGSTR_443579 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37730896;END=37730907;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6353 chr21 37731808 GANGSTR_443580 TGCCTTGCCTTGCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37731808;END=37731822;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6354 chr21 37736883 GANGSTR_443581 GAGGCTGAGGCTGAGGCTGAGGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37736883;END=37736906;PERIOD=6;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|33:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6355 chr21 37741376 GANGSTR_443582 TGATGATGATGATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37741376;END=37741390;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6356 chr21 37744097 GANGSTR_443584 TGTTTTGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=37744097;END=37744116;PERIOD=5;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=8;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:8:37.50|37.50:0|0:.:0:.:0:-1|1;0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6357 chr21 37746382 GANGSTR_443585 ATTATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37746382;END=37746399;PERIOD=3;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6358 chr21 37746927 GANGSTR_443586 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37746927;END=37746938;PERIOD=3;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|30:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6359 chr21 37750674 GANGSTR_443587 TTACTTACTTACTTAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37750674;END=37750689;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6360 chr21 37752059 GANGSTR_443588 TAAATTTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37752059;END=37752070;PERIOD=6;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|38:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6361 chr21 37752880 GANGSTR_443589 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37752880;END=37752891;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|32:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6362 chr21 37753195 GANGSTR_443590 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=37753195;END=37753206;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|24:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6363 chr21 37754993 GANGSTR_443591 TTATTATTATTATTATTATTATTA TTATTATTATTATTATTATTA . . INFRAME_PGEOM=0.97;INFRAME_UP=0.07;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37754993;END=37755016;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=55;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-3:1:0.5:55:0:1:0:27.36|27.64:0|0:6.39:-0.06:34:-0.73:-6|1;-3|14;0|11:-6|1;-3|13;0|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6364 chr21 37757460 GANGSTR_443592 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37757460;END=37757471;PERIOD=3;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|55:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6365 chr21 37758902 GANGSTR_443593 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37758902;END=37758913;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6366 chr21 37762058 GANGSTR_443594 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCG . . INFRAME_PGEOM=0.93;INFRAME_UP=0.06;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=37762058;END=37762099;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=60;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:60:0:1:1:28.09|31.91:0|0:30.97:-0.22:34:-0.77:0|10;2|2;4|6:0|6;4|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6367 chr21 37765229 GANGSTR_443595 TGAGTGAGTGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37765229;END=37765240;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6368 chr21 37766197 GANGSTR_443596 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37766197;END=37766211;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6369 chr21 37769690 GANGSTR_443597 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37769690;END=37769701;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|57:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6370 chr21 37770643 GANGSTR_443599 ATTTTTATTTTTATTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37770643;END=37770660;PERIOD=6;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6371 chr21 37772479 GANGSTR_443600 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37772479;END=37772488;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6372 chr21 37777720 GANGSTR_443601 ATTTATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37777720;END=37777739;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6373 chr21 37780313 GANGSTR_443602 TAATAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37780313;END=37780327;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.50|32.50:0|0:.:0:.:0:0|45:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6374 chr21 37781920 GANGSTR_443603 TATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37781920;END=37781935;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6375 chr21 37786905 GANGSTR_443604 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37786905;END=37786920;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6376 chr21 37792635 GANGSTR_443605 TTCATTCATTCATTCATTCATTCATTCATTCATTCA TTCATTCATTCATTCATTCATTCATTCATTCATTCATTCA,TTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCA . . INFRAME_PGEOM=0.98;INFRAME_UP=0.08;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=37792635;END=37792670;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4,8;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:4|8:1:0.5:65:0:0:0:31.05|33.95:0|0:3.56:-0.16:25:0:-6|1;0|3;4|10;8|9:4|9;8|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6377 chr21 37798256 GANGSTR_443606 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37798256;END=37798267;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6378 chr21 37801136 GANGSTR_443607 ACAGACAGACAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37801136;END=37801147;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6379 chr21 37803365 GANGSTR_443608 GTTTTGTTTTGTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37803365;END=37803379;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6380 chr21 37803900 GANGSTR_443609 ATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37803900;END=37803915;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6381 chr21 37805752 GANGSTR_443610 CACCCACCCACCCACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37805752;END=37805767;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6382 chr21 37813914 GANGSTR_443611 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37813914;END=37813933;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|49:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6383 chr21 37815308 GANGSTR_443612 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37815308;END=37815319;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6384 chr21 37817285 GANGSTR_443613 ATTTATTTATTTATTTATTT . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37817285;END=37817304;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:1:0:25.50|25.50:0|0:.:0:.:0:-4|1;0|32:-4|1;0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6385 chr21 37817905 GANGSTR_443614 TCTTCTTTTCTTTTCTT TTTTCTTTTCTTTTCTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37817907;END=37817921;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:55:0:0:0:25.54|29.46:0|0:81.34:-0.18:48:-0.42:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6386 chr21 37820093 GANGSTR_443615 TAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37820093;END=37820100;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|54:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6387 chr21 37821708 GANGSTR_443616 CTGCCTGCCTGC CTGCCTGCCGGC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37821708;END=37821719;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:56:0:0:1:31.00|25.00:0|0:72.76:-0.33:48:-0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6388 chr21 37822833 GANGSTR_443617 AAAACAAAACAAAACAAAAC AAAACAAAACAAAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.08;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=37822833;END=37822852;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-5;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-5:1:0.5:54:0:0:2:26.20|27.80:0|0:7.09:-0.07:32:0:-16|1;-5|13;0|13:-5|14;0|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6389 chr21 37823520 GANGSTR_443618 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37823520;END=37823531;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:1:36.58|36.42:0|0:.:0:.:0:0|47;6|1:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6390 chr21 37826919 GANGSTR_443620 ACACACACACACACACACACACACACACACACACACACACACACC ACACACACACACACACACACACACACACACACACC,ACACACACACACACACACACACACACACACACACACACACACACT . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=37826919;END=37826962;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-10,0;DP=52;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-10|0:1:0.5:52:0:1:2:21.55|30.45:0|0:61.84:-0.58:51:-0.6:-12|1;-10|9;-4|1;0|7:-12|1;-10|9;0|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6391 chr21 37830185 GANGSTR_443621 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37830185;END=37830194;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6392 chr21 37831316 GANGSTR_443622 CAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=37831316;END=37831331;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6393 chr21 37835233 GANGSTR_443623 AAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37835233;END=37835240;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|34:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6394 chr21 37841046 GANGSTR_443624 TTTCTTTCTTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.02;START=37841046;END=37841065;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:3:33.50|33.50:0|0:.:0:.:0:0|41;1|1:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6395 chr21 37843280 GANGSTR_443625 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37843280;END=37843291;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6396 chr21 37843507 GANGSTR_443626 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37843507;END=37843518;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6397 chr21 37848039 GANGSTR_443627 TTTTATTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37848039;END=37848058;PERIOD=5;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:3:38.00|38.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6398 chr21 37852504 GANGSTR_443628 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37852504;END=37852515;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6399 chr21 37856219 GANGSTR_443629 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37856219;END=37856230;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6400 chr21 37858454 GANGSTR_443630 TGGCTGGCTGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37858454;END=37858465;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6401 chr21 37858714 GANGSTR_443631 CTGCTGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37858714;END=37858722;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:1:22.50|22.50:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6402 chr21 37862480 GANGSTR_443633 TTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37862480;END=37862489;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6403 chr21 37865905 GANGSTR_443634 GAGGAGGAGGAGGGAA GAGGAGGAGGAGGGAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37865905;END=37865916;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:52:0:0:0:26.00|26.00:0|0:13.85:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6404 chr21 37871555 GANGSTR_443635 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37871555;END=37871570;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6405 chr21 37881321 GANGSTR_443636 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37881321;END=37881332;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6406 chr21 37881893 GANGSTR_443637 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37881893;END=37881908;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6407 chr21 37885426 GANGSTR_443638 TCCCATCCCATCCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37885426;END=37885440;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6408 chr21 37886121 GANGSTR_443639 TTCTTTCTTTCTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37886121;END=37886136;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6409 chr21 37886917 GANGSTR_443640 GAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.98;INFRAME_UP=0.04;INFRAME_DOWN=0.18;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=37886921;END=37886960;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=54;DSNP=0;DSTUTTER=4;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-6|-6:1:1:54:0:4:1:27.00|27.00:0|0:11.15:0:.:0:-8|4;-6|22:-8|4;-6|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6410 chr21 37890374 GANGSTR_443641 ACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.96;INFRAME_UP=0.06;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37890374;END=37890407;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=58;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-6|-6:1:1:58:0:2:1:29.00|29.00:0|0:10.82:0:.:0:-8|2;-6|32;-4|1:-8|2;-6|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6411 chr21 37892011 GANGSTR_443642 AACAACAACAACAACAACAAC AACAACAACAACAACAACAACAAA . . INFRAME_PGEOM=0.98;INFRAME_UP=0.02;INFRAME_DOWN=0.22;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37892011;END=37892031;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=3;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:3|3:1:1:72:0:0:0:36.00|36.00:0|0:16.55:0:.:0:-6|1;0|9;3|34:3|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6412 chr21 37893364 GANGSTR_443643 CGTTTCAGAAAGAAAGAA CATTTCAGAAAGAAAGAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37893370;END=37893381;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:55:0:0:0:27.50|27.50:0|0:12.63:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6413 chr21 37903566 GANGSTR_443644 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37903566;END=37903577;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=4;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:1:4:27.00|27.00:0|0:.:0:.:0:0|45:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6414 chr21 37904676 GANGSTR_443645 AAATAAATAAATAAATGTTTA AAATAAATAAATAAATGTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.96;OUTFRAME_UP=0.21;OUTFRAME_DOWN=0.03;START=37904676;END=37904691;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-1|-1:1:1:48:0:0:1:24.00|24.00:0|0:6.26:0:.:0:-1|22;0|6:-1|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6415 chr21 37904890 GANGSTR_443646 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37904890;END=37904901;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6416 chr21 37907614 GANGSTR_443647 GGAGGTGGAGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37907614;END=37907625;PERIOD=6;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6417 chr21 37911783 GANGSTR_443651 TGTGTGTGTGTGCAG TGTGTGTGTGTGC . . INFRAME_PGEOM=0.99;INFRAME_UP=0.11;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37911783;END=37911794;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:41:0:0:0:20.50|20.50:0|0:11.1:0:.:0:-2|30;0|3:-2|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6418 chr21 37912948 GANGSTR_443652 GGGAGGGAGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37912948;END=37912959;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:1:1:31.00|31.00:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6419 chr21 37921575 GANGSTR_443653 CTCTCTCTCTCTCTCTCTCT CACCCTCTCTCTCTCTCTCTCTCT . . INFRAME_PGEOM=0.53;INFRAME_UP=0.16;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37921575;END=37921594;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=53;DSNP=0;DSTUTTER=2;DFLANKINDEL=2;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:53:0:2:2:26.50|26.50:0|0:7.85:0:.:0:0|27;2|1;4|3;6|1:0|1;4|24;6|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6420 chr21 37922371 GANGSTR_443654 TGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37922371;END=37922378;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6421 chr21 37927859 GANGSTR_443656 GATGGATGGATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37927859;END=37927870;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6422 chr21 37928797 GANGSTR_443657 TCTGCCTCTGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37928797;END=37928808;PERIOD=6;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6423 chr21 37931471 GANGSTR_443659 TTTTATTTTATTTTATTTTATTTTATTTTATTTTA TTTTATTTTATTTTATTTTATTTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37931471;END=37931505;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-10;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-10|-10:1:1:72:0:0:0:36.00|36.00:0|0:12.55:0:.:0:-10|33:-10|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6424 chr21 37944482 GANGSTR_443660 GTTTGGTTTGGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37944482;END=37944496;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6425 chr21 37944568 GANGSTR_443661 TGTGTGTGTGTGTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37944568;END=37944581;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:1:0:27.50|27.50:0|0:.:0:.:0:-2|1;0|41:-2|1;0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6426 chr21 37946217 GANGSTR_443662 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37946217;END=37946228;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|51:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6427 chr21 37948361 GANGSTR_443663 AACCAACCAACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37948361;END=37948372;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6428 chr21 37948560 GANGSTR_443664 TCTTTCTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37948560;END=37948571;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6429 chr21 37954268 GANGSTR_443665 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37954268;END=37954279;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6430 chr21 37955081 GANGSTR_443666 GAGGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37955081;END=37955090;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6431 chr21 37956730 GANGSTR_443667 CAACAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37956730;END=37956744;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6432 chr21 37961006 GANGSTR_443668 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37961006;END=37961020;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6433 chr21 37963059 GANGSTR_443670 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37963059;END=37963070;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6434 chr21 37964612 GANGSTR_443671 CTCTCTCTCTCTCT CTCTCTCCCTCTCT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37964612;END=37964625;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:53:0:0:0:26.50|26.50:0|0:13.84:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6435 chr21 37966839 GANGSTR_443672 CGGGGGGAGAGAGAGAGAGAGA CCGGGGGAGAGAGAGAGAGAGA . . INFRAME_PGEOM=0.73;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37966845;END=37966860;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=49;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=6;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:49:0:1:1:24.50|24.50:0|0:11.43:0:.:0:-4|1;0|31:-4|1;0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6436 chr21 37969250 GANGSTR_443673 ATCCATCCATCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=37969250;END=37969261;PERIOD=4;NSKIP=0;NFILT=0;DP=33;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:33:0:0:0:16.50|16.50:0|0:.:0:.:0:0|22:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6437 chr21 37976010 GANGSTR_443674 TGTGTGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=37976010;END=37976033;PERIOD=2;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|26:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6438 chr21 37981572 GANGSTR_443675 ATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37981572;END=37981579;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6439 chr21 37989360 GANGSTR_443677 GCCTGCCTGCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37989360;END=37989371;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6440 chr21 37990249 GANGSTR_443678 AGAAGAGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=37990249;END=37990258;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6441 chr21 38000176 GANGSTR_443679 ACACACACACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38000176;END=38000195;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:1:0:27.00|27.00:0|0:.:0:.:0:-2|1;0|37:-2|1;0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6442 chr21 38001048 GANGSTR_443680 TCTGCTCTGCTCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38001048;END=38001062;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6443 chr21 38017916 GANGSTR_443681 ACAAACAAACAAACAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38017916;END=38017935;PERIOD=4;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6444 chr21 38018864 GANGSTR_443682 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38018864;END=38018875;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:30.99|27.01:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6445 chr21 38031749 GANGSTR_443683 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.96;INFRAME_UP=0.08;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=38031749;END=38031792;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=46;DSNP=0;DSTUTTER=3;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:46:0:3:1:23.00|23.00:0|0:4.09:0:.:0:-4|2;-2|18;0|1:-4|2;-2|16;0|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6446 chr21 38034325 GANGSTR_443684 AAGGAAGGAAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38034325;END=38034336;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6447 chr21 38034611 GANGSTR_443685 TAAAATGTAAAATGTAAAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=38034611;END=38034631;PERIOD=7;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|24:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6448 chr21 38036284 GANGSTR_443686 ATATGAATATGAATATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38036284;END=38036301;PERIOD=6;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6449 chr21 38036622 GANGSTR_443687 GAGAGGGGAGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=38036622;END=38036635;PERIOD=7;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|19:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6450 chr21 38036967 GANGSTR_443688 TTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=38036967;END=38036978;PERIOD=4;NSKIP=0;NFILT=0;DP=35;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:0:0:17.50|17.50:0|0:.:0:.:0:0|20:0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6451 chr21 38046949 GANGSTR_443691 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38046949;END=38046960;PERIOD=2;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:0:19.50|19.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6452 chr21 38048432 GANGSTR_443692 ACAAACAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38048432;END=38048443;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|56:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6453 chr21 38049015 GANGSTR_443693 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38049015;END=38049034;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6454 chr21 38050148 GANGSTR_443694 ATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38050148;END=38050162;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|31:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6455 chr21 38050499 GANGSTR_443695 AAGAAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38050499;END=38050508;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6456 chr21 38060028 GANGSTR_443696 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38060028;END=38060042;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:1:2:28.00|28.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6457 chr21 38060340 GANGSTR_443697 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38060340;END=38060359;PERIOD=4;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6458 chr21 38066064 GANGSTR_443698 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38066064;END=38066075;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6459 chr21 38067160 GANGSTR_443699 ATTAATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38067160;END=38067171;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:1:35.50|35.50:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6460 chr21 38072782 GANGSTR_443700 CTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38072782;END=38072793;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6461 chr21 38077704 GANGSTR_443701 CTCCCCTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38077704;END=38077713;PERIOD=5;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:2:20.50|20.50:0|0:.:0:.:0:0|27:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6462 chr21 38081489 GANGSTR_443703 AGCCGAGCCG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38081489;END=38081498;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6463 chr21 38088025 GANGSTR_443704 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38088025;END=38088039;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6464 chr21 38093735 GANGSTR_443705 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38093735;END=38093749;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6465 chr21 38094881 GANGSTR_443706 AGTGAGTGAGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38094881;END=38094892;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6466 chr21 38099338 GANGSTR_443707 TTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38099338;END=38099349;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.50|32.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6467 chr21 38106428 GANGSTR_443708 CACCACACCACACCACACCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38106428;END=38106447;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6468 chr21 38113842 GANGSTR_443709 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38113842;END=38113853;PERIOD=2;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|33:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6469 chr21 38119328 GANGSTR_443710 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38119328;END=38119343;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6470 chr21 38119969 GANGSTR_443711 CCGCCGCCGCCG . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38119969;END=38119980;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:1:1:23.00|23.00:0|0:.:0:.:0:-3|1;0|33:-3|1;0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6471 chr21 38130107 GANGSTR_443712 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38130107;END=38130118;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6472 chr21 38130406 GANGSTR_443713 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38130406;END=38130417;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6473 chr21 38132454 GANGSTR_443714 CCACCACCACCACCACCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38132454;END=38132471;PERIOD=3;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:0:19.50|19.50:0|0:.:0:.:0:0|26:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6474 chr21 38137011 GANGSTR_443715 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38137011;END=38137022;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6475 chr21 38137951 GANGSTR_443716 TTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38137951;END=38137959;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6476 chr21 38138335 GANGSTR_443717 CTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38138335;END=38138342;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6477 chr21 38140515 GANGSTR_443718 TTTTCTTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38140515;END=38140529;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6478 chr21 38143521 GANGSTR_443719 AAATAAATAAATAAATAAATAAATAAATAT AAATAAATAAATAAATAAATAAATAAATAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=38143521;END=38143548;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:47:0:0:0:25.99|21.01:0|0:48.03:-0.29:37:-0.72:0|20:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6479 chr21 38150580 GANGSTR_443720 ATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38150580;END=38150594;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6480 chr21 38153273 GANGSTR_443721 GCAGGCAGGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=38153273;END=38153284;PERIOD=4;NSKIP=0;NFILT=0;DP=33;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:33:0:0:0:16.50|16.50:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6481 chr21 38155343 GANGSTR_443722 TGTATTGTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38155343;END=38155352;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6482 chr21 38156265 GANGSTR_443723 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38156265;END=38156276;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6483 chr21 38161354 GANGSTR_443724 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38161354;END=38161369;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6484 chr21 38162705 GANGSTR_443725 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38162705;END=38162724;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|25:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6485 chr21 38170835 GANGSTR_443727 ACTGACTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38170835;END=38170842;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6486 chr21 38173917 GANGSTR_443728 TTATTATTATTA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38173917;END=38173928;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:1:0:31.50|31.50:0|0:.:0:.:0:-3|1;0|42:-3|1;0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6487 chr21 38175570 GANGSTR_443729 GCAGGCAGGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38175570;END=38175581;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6488 chr21 38182045 GANGSTR_443730 TTTGCTTTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38182045;END=38182054;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6489 chr21 38185370 GANGSTR_443731 AAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38185370;END=38185379;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:1:34.00|34.00:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6490 chr21 38195911 GANGSTR_443732 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.06;INFRAME_DOWN=0.21;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38195911;END=38195948;PERIOD=2;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=7;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:7:0:33.00|33.00:0|0:.:0:.:0:-2|6;0|21;2|1:-2|5;0|20;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6491 chr21 38196895 GANGSTR_443733 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38196895;END=38196910;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6492 chr21 38197293 GANGSTR_443734 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38197293;END=38197304;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6493 chr21 38197694 GANGSTR_443735 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38197694;END=38197705;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6494 chr21 38212911 GANGSTR_443738 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38212911;END=38212922;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6495 chr21 38215769 GANGSTR_443739 AAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38215769;END=38215776;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6496 chr21 38216764 GANGSTR_443740 ATAAATAAATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38216764;END=38216783;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6497 chr21 38217511 GANGSTR_443741 CCTCCCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38217511;END=38217520;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|54:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6498 chr21 38227885 GANGSTR_443742 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38227885;END=38227896;PERIOD=4;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:0:19.50|19.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6499 chr21 38230090 GANGSTR_443743 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38230090;END=38230101;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6500 chr21 38231327 GANGSTR_443744 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38231327;END=38231341;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6501 chr21 38237909 GANGSTR_443746 TTGTTATTGTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38237909;END=38237920;PERIOD=6;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|40:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6502 chr21 38245426 GANGSTR_443749 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38245426;END=38245437;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6503 chr21 38246705 GANGSTR_443750 AAAATAAAATAAAATAAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=38246705;END=38246734;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|18:0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6504 chr21 38250771 GANGSTR_443751 ACTACTACTACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38250771;END=38250782;PERIOD=3;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|56:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6505 chr21 38252679 GANGSTR_443752 AAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38252679;END=38252698;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6506 chr21 38253255 GANGSTR_443753 TTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTG TTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.08;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=38253255;END=38253286;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:55:0:0:0:26.45|28.55:0|0:4.82:-0.07:26:-0.16:-9|1;0|12;4|10:0|12;4|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6507 chr21 38254734 GANGSTR_443754 TTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38254734;END=38254753;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6508 chr21 38262026 GANGSTR_443755 CAGACACAGACACAGACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38262026;END=38262043;PERIOD=6;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6509 chr21 38268648 GANGSTR_443757 TCAATCAATCAATCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38268648;END=38268663;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6510 chr21 38271924 GANGSTR_443758 AATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38271924;END=38271938;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|36:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6511 chr21 38275566 GANGSTR_443759 GAAGAAGAAGAAGAA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38275566;END=38275580;PERIOD=3;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:1:1:37.00|37.00:0|0:.:0:.:0:-3|1;0|53:-3|1;0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6512 chr21 38294288 GANGSTR_443760 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38294288;END=38294299;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6513 chr21 38310970 GANGSTR_443762 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38310970;END=38310981;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6514 chr21 38312355 GANGSTR_443763 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38312355;END=38312366;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6515 chr21 38312645 GANGSTR_443764 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38312645;END=38312656;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6516 chr21 38316916 GANGSTR_443766 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38316916;END=38316927;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6517 chr21 38326603 GANGSTR_443767 AAAATAAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38326603;END=38326622;PERIOD=5;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6518 chr21 38327047 GANGSTR_443768 AAAACAAAACAAAACAAAACAAAAC AAACAAAACAAAACAAAACAAAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38327047;END=38327071;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-1|-1:1:1:60:0:0:0:30.00|30.00:0|0:14.75:0:.:0:-1|28:-1|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6519 chr21 38328061 GANGSTR_443769 CACTCACTCACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38328061;END=38328072;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6520 chr21 38330372 GANGSTR_443770 AATAAATAAATAAATAAATA AAAAAATAAATAAATAAATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38330372;END=38330391;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:59:0:0:0:29.50|29.50:0|0:14.35:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6521 chr21 38331197 GANGSTR_443771 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38331197;END=38331208;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6522 chr21 38338226 GANGSTR_443772 TTTGTTTTGTTTTTT TTTGTTTTGTTTTGTTTTTG,TTTGTTTTGTTTTGTTTTTT . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.52;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.07;START=38338226;END=38338235;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=5,5;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=6;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:5|5:1:0.5:50:0:0:0:24.50|25.50:0|0:27.71:-0:41:-0.67:0|2;1|1;2|3;5|28:5|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6523 chr21 38338720 GANGSTR_443773 CGCCCGCCCGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38338720;END=38338731;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:1:1:20.00|20.00:0|0:.:0:.:0:-2|1;0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6524 chr21 38340023 GANGSTR_443774 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38340023;END=38340034;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6525 chr21 38341651 GANGSTR_443775 AGCAGCAGCAGCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38341651;END=38341665;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6526 chr21 38345360 GANGSTR_443776 AAAACAAAAC AAAAACAAAAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.73;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.13;START=38345360;END=38345369;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=2;DP=51;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:51:0:1:2:25.50|25.50:0|0:13.54:0:.:0:0|1;1|2;2|28;3|1:-3|1;2|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6527 chr21 38346292 GANGSTR_443777 AAATAAATAAATAAAT AAATAAATAAATAAATAAACAAAC . . INFRAME_PGEOM=0.91;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38346292;END=38346307;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=8;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:8|8:1:1:72:0:0:1:36.00|36.00:0|0:16.47:0:.:0:0|10;8|32:8|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6528 chr21 38348896 GANGSTR_443778 AATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38348896;END=38348910;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6529 chr21 38353386 GANGSTR_443779 CCACCCACCCAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38353386;END=38353397;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6530 chr21 38355511 GANGSTR_443780 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38355511;END=38355526;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6531 chr21 38361327 GANGSTR_443781 TTTATTTATTTATTTATTTATTT TTTATTTATTTATTTTTTTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.96;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.04;START=38361327;END=38361346;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:61:0:0:0:28.46|32.54:0|0:203.57:-0.17:52:0:-5|2;-1|20;0|14:-1|19;0|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6532 chr21 38364718 GANGSTR_443783 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38364718;END=38364729;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:26.50|27.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6533 chr21 38365589 GANGSTR_443784 AAACAAACAAACAAAC AAACAAACAAACAAACAAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.08;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=38365589;END=38365604;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:59:0:0:0:28.87|30.13:0|0:6.09:-0:29:-0.89:-1|1;0|14;4|12:0|12;4|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6534 chr21 38368814 GANGSTR_443785 TTTTGTTTTGTTTTGTTTTG TTTTGTTTTGTTTTGTTTTGTTTTGTTTTG . . INFRAME_PGEOM=0.91;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.72;OUTFRAME_UP=0.16;OUTFRAME_DOWN=0.04;START=38368814;END=38368833;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=10;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|10:1:0.5:64:0:0:1:27.71|36.29:0|0:20.03:-0.76:35:-0.3:0|13;1|1;2|3;7|1;8|1;10|10:0|12;10|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6535 chr21 38374300 GANGSTR_443787 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38374300;END=38374311;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6536 chr21 38374722 GANGSTR_443788 TTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38374722;END=38374736;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6537 chr21 38376618 GANGSTR_443789 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38376618;END=38376629;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6538 chr21 38380016 GANGSTR_443790 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38380016;END=38380027;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6539 chr21 38381151 GANGSTR_443791 GGGAGGGGAGGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38381151;END=38381165;PERIOD=5;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:3:21.50|21.50:0|0:.:0:.:0:0|29;5|1:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6540 chr21 38384513 GANGSTR_443792 TTATTATTATTATTATTATTATTATTATTATTATTATTA TTTTTATTATTATTATTATTATTATTATTATTATTATTATTA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.1;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=38384513;END=38384551;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=3;DP=32;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|3:1:0.5:32:0:1:0:13.43|18.57:0|0:16.79:-0.33:31:-0.14:0|5;3|6:0|4;3|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6541 chr21 38387034 GANGSTR_443793 TTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38387034;END=38387043;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6542 chr21 38389140 GANGSTR_443794 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38389140;END=38389151;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6543 chr21 38390994 GANGSTR_443795 GGTTTGGTTTGGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38390994;END=38391008;PERIOD=5;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6544 chr21 38395893 GANGSTR_443796 TTTTGTTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38395893;END=38395917;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:24.50|33.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6545 chr21 38396353 GANGSTR_443797 TGGAGTGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38396353;END=38396362;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:2:31.50|31.50:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6546 chr21 38398791 GANGSTR_443798 GAGAGAGAGAGAGA GAGAGAGAGAGA . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38398791;END=38398804;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=59;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:59:0:1:0:29.50|29.50:0|0:12.83:0:.:0:-4|1;-2|43:-4|1;-2|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6547 chr21 38399909 GANGSTR_443799 TTTGTTTTGTTTTGT TTTCTTTTGTTTTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38399909;END=38399923;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:68:0:0:0:35.99|32.01:0|0:93.79:-0.16:58:-0.1:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6548 chr21 38401938 GANGSTR_443800 TTTATTTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38401938;END=38401957;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6549 chr21 38402480 GANGSTR_443801 CAAAACAAAACAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38402480;END=38402504;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:25.91|28.09:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6550 chr21 38404647 GANGSTR_443802 TCATCTCATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38404647;END=38404656;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6551 chr21 38405699 GANGSTR_443803 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38405699;END=38405714;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6552 chr21 38408861 GANGSTR_443804 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38408861;END=38408872;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6553 chr21 38410429 GANGSTR_443805 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38410429;END=38410440;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6554 chr21 38414376 GANGSTR_443806 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38414376;END=38414387;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6555 chr21 38415269 GANGSTR_443807 TATTTATTTATTTATTTATTTATTTATT TATTTATTTATTTATTTATT . . INFRAME_PGEOM=0.91;INFRAME_UP=0.05;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=38415269;END=38415296;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-8;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-8:1:0.5:60:0:0:0:32.48|27.52:0|0:21.4:-0.33:31:-0.83:-8|10;0|12:-8|9;0|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6556 chr21 38417596 GANGSTR_443808 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38417596;END=38417607;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6557 chr21 38422358 GANGSTR_443809 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38422358;END=38422377;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:30.50|42.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6558 chr21 38424611 GANGSTR_443810 AATAATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=38424611;END=38424628;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|17:0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6559 chr21 38425524 GANGSTR_443811 AATAAATAAATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38425524;END=38425543;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6560 chr21 38427511 GANGSTR_443812 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38427511;END=38427525;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:34.50|27.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6561 chr21 38428393 GANGSTR_443813 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38428393;END=38428404;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6562 chr21 38433345 GANGSTR_443814 TTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38433345;END=38433360;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6563 chr21 38439272 GANGSTR_443816 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.76;INFRAME_UP=0.05;INFRAME_DOWN=0.15;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=38439272;END=38439315;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-10;DP=49;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-10|-10:1:1:49:0:3:0:24.50|24.50:0|0:7.77:0:.:0:-14|1;-12|1;-10|20:-14|1;-12|1;-10|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6564 chr21 38443848 GANGSTR_443817 CTTCACTTCACTTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38443848;END=38443862;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6565 chr21 38445108 GANGSTR_443818 GGGAGGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38445108;END=38445117;PERIOD=5;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6566 chr21 38457292 GANGSTR_443819 CAAACAAACAAACAAACAAA CAAACAAACAAACAAACAAACAAACAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38457292;END=38457311;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=8;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:8|8:1:1:63:0:0:1:31.50|31.50:0|0:13.73:0:.:0:-14|8;-8|1;-2|5;3|3;8|26:8|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6567 chr21 38460381 GANGSTR_443820 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38460381;END=38460392;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6568 chr21 38461812 GANGSTR_443821 TTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38461812;END=38461826;PERIOD=3;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|45:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6569 chr21 38473652 GANGSTR_443824 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.97;INFRAME_UP=0.03;INFRAME_DOWN=0.16;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38473652;END=38473685;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=64;DSNP=0;DSTUTTER=6;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-6:1:0.5:64:0:6:0:31.15|32.85:0|0:55.08:-0.06:36:0:-8|2;-6|16;-2|4;0|12:-8|2;-6|15;-4|1;-2|3;0|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6570 chr21 38475863 GANGSTR_443826 TATTAATATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38475863;END=38475874;PERIOD=6;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:1:38.00|38.00:0|0:.:0:.:0:0|53:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6571 chr21 38481902 GANGSTR_443827 GCCTGCCTGCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=38481902;END=38481913;PERIOD=4;NSKIP=0;NFILT=0;DP=101;DSNP=0;DSTUTTER=0;DFLANKINDEL=13;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:101:0:0:13:50.50|50.50:0|0:.:0:.:0:0|75;1|1:0|73:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6572 chr21 38489784 GANGSTR_443829 AATGAATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38489784;END=38489799;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6573 chr21 38495254 GANGSTR_443830 TGTGTGTGTGTGTGTGA TGTGTGTGTGTGTGTGAT . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38495254;END=38495269;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=1;DP=63;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:1|1:1:1:63:0:1:1:31.50|31.50:0|0:15.65:0:.:0:-25|1;-1|1;1|45:-1|1;1|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6574 chr21 38496001 GANGSTR_443831 TAACTTAACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38496001;END=38496010;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6575 chr21 38498290 GANGSTR_443832 ATTCTATTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38498290;END=38498299;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6576 chr21 38502067 GANGSTR_443833 ACTACTACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38502067;END=38502075;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6577 chr21 38503348 GANGSTR_443834 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38503348;END=38503359;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6578 chr21 38506169 GANGSTR_443835 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38506169;END=38506180;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6579 chr21 38508400 GANGSTR_443836 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38508400;END=38508411;PERIOD=2;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|54:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6580 chr21 38514566 GANGSTR_443837 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38514566;END=38514577;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6581 chr21 38516550 GANGSTR_443838 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38516550;END=38516561;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:1:26.50|26.50:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6582 chr21 38520785 GANGSTR_443839 AGTGAGTGAGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38520785;END=38520796;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6583 chr21 38526992 GANGSTR_443840 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.03;START=38526992;END=38527007;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:2:22.00|22.00:0|0:.:0:.:0:0|33;1|1:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6584 chr21 38527667 GANGSTR_443841 CTGCCTGCCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38527667;END=38527678;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6585 chr21 38530032 GANGSTR_443842 CTAGCTAGCTAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38530032;END=38530043;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6586 chr21 38533578 GANGSTR_443843 ATTTTTATTTTTATTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38533578;END=38533595;PERIOD=6;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|41:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6587 chr21 38540609 GANGSTR_443844 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38540609;END=38540620;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6588 chr21 38551429 GANGSTR_443845 TAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38551429;END=38551436;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6589 chr21 38558743 GANGSTR_443846 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38558743;END=38558754;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6590 chr21 38561550 GANGSTR_443847 TTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38561550;END=38561557;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|46:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6591 chr21 38561851 GANGSTR_443848 TTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38561851;END=38561862;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:1:23.50|23.50:0|0:.:0:.:0:-2|1;0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6592 chr21 38563879 GANGSTR_443849 GTTTTGTTTTGTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38563879;END=38563893;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6593 chr21 38564053 GANGSTR_443850 TTTTGGTTTTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38564053;END=38564064;PERIOD=6;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|39:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6594 chr21 38564793 GANGSTR_443851 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=38564793;END=38564824;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6;DP=52;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|6:1:0.5:52:0:1:2:26.46|25.54:0|0:73.1:-0:23:0:-2|1;0|11;1|1;6|11:-2|1;0|9;6|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6595 chr21 38566006 GANGSTR_443852 TCATTCATTCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38566006;END=38566017;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|51:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6596 chr21 38570027 GANGSTR_443853 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38570027;END=38570038;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:3:27.50|27.50:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6597 chr21 38571883 GANGSTR_443854 TTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38571883;END=38571892;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6598 chr21 38573311 GANGSTR_443855 GCAGCAGCAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38573311;END=38573322;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6599 chr21 38575923 GANGSTR_443856 ATTTAATTTAATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38575923;END=38575937;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6600 chr21 38576724 GANGSTR_443857 TGTGTGTGTGTGTGTGTGTGTGCAGTC TGTGTGTGTGTGTGTGTGTGCAGTG . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38576724;END=38576745;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=52;DSNP=0;DSTUTTER=3;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:52:0:3:1:26.00|26.00:0|0:12.67:0:.:0:-20|1;-4|2;-2|30;0|1:-4|2;-2|28;0|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6601 chr21 38576994 GANGSTR_443858 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38576994;END=38577005;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6602 chr21 38589407 GANGSTR_443859 TATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38589407;END=38589422;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6603 chr21 38589874 GANGSTR_443860 TTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38589874;END=38589881;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6604 chr21 38593032 GANGSTR_443861 CACATCACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38593032;END=38593041;PERIOD=5;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6605 chr21 38601537 GANGSTR_443862 GAAGAAGAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38601537;END=38601548;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|51:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6606 chr21 38624835 GANGSTR_443863 AAACAAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38624835;END=38624858;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6607 chr21 38626812 GANGSTR_443864 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38626812;END=38626823;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|35:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6608 chr21 38639311 GANGSTR_443865 GCGGCGGCGGCG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38639311;END=38639322;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|35:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6609 chr21 38639930 GANGSTR_443866 GGAGGGAGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38639930;END=38639941;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6610 chr21 38640641 GANGSTR_443867 GCAGGGCAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38640641;END=38640650;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6611 chr21 38641266 GANGSTR_443868 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38641266;END=38641280;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6612 chr21 38644378 GANGSTR_443869 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38644378;END=38644392;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:24.97|28.03:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6613 chr21 38645451 GANGSTR_443870 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=38645451;END=38645465;PERIOD=5;NSKIP=0;NFILT=0;DP=18;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:18:0:0:1:9.00|9.00:0|0:.:0:.:0:0|10:0|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6614 chr21 38645959 GANGSTR_443871 AGGAGGAGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38645959;END=38645973;PERIOD=3;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6615 chr21 38648168 GANGSTR_443873 AGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38648168;END=38648176;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6616 chr21 38648697 GANGSTR_443874 ACAACAACAACAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38648697;END=38648711;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|36:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6617 chr21 38649023 GANGSTR_443875 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38649023;END=38649034;PERIOD=2;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|28:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6618 chr21 38657785 GANGSTR_443876 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38657785;END=38657796;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|38:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6619 chr21 38659578 GANGSTR_443877 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38659578;END=38659593;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6620 chr21 38671122 GANGSTR_443878 CCCACCCACCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38671122;END=38671133;PERIOD=4;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|28:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6621 chr21 38672425 GANGSTR_443879 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38672425;END=38672436;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:2:23.50|23.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6622 chr21 38677278 GANGSTR_443881 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38677278;END=38677289;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6623 chr21 38681588 GANGSTR_443882 TATTTATTTATTTATTTATTTATTTATTTATT TATTTATTTATTTATTTATTTATTTATTTATTTATTTATT . . INFRAME_PGEOM=0.89;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=38681588;END=38681619;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=8;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|8:1:0.5:51:0:0:0:24.48|26.52:0|0:9.97:-0.09:16:-0.5:0|6;1|1;8|8:0|5;8|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6624 chr21 38689586 GANGSTR_443883 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38689586;END=38689601;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6625 chr21 38689693 GANGSTR_443884 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38689693;END=38689704;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|27:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6626 chr21 38695989 GANGSTR_443885 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38695989;END=38696003;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6627 chr21 38696296 GANGSTR_443886 TTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38696296;END=38696310;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:21.50|25.50:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6628 chr21 38697324 GANGSTR_443887 TCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTC . . INFRAME_PGEOM=0.97;INFRAME_UP=0.05;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=38697324;END=38697343;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=62;DSNP=0;DSTUTTER=1;DFLANKINDEL=6;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:62:0:1:6:31.00|31.00:0|0:8.59:0:.:0:0|8;1|5;2|25:0|1;2|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6629 chr21 38702782 GANGSTR_443888 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38702782;END=38702796;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6630 chr21 38704298 GANGSTR_443889 TCTTTCTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38704298;END=38704309;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6631 chr21 38704630 GANGSTR_443890 TTCTTCTTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.96;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=38704630;END=38704641;PERIOD=3;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:5:24.00|24.00:0|0:.:0:.:0:-1|2;0|31;1|2:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6632 chr21 38706726 GANGSTR_443891 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38706726;END=38706740;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6633 chr21 38707464 GANGSTR_443892 AAACAAAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38707464;END=38707483;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6634 chr21 38709402 GANGSTR_443893 ATAAATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38709402;END=38709417;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6635 chr21 38713637 GANGSTR_443895 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=38713637;END=38713648;PERIOD=2;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|24:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6636 chr21 38715055 GANGSTR_443896 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38715055;END=38715070;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6637 chr21 38716108 GANGSTR_443897 TTTGTTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38716108;END=38716131;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:1:0:29.00|29.00:0|0:.:0:.:0:-4|1;0|34:-4|1;0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6638 chr21 38721908 GANGSTR_443898 TTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38721908;END=38721927;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6639 chr21 38724045 GANGSTR_443899 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38724045;END=38724056;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6640 chr21 38727150 GANGSTR_443900 ACAAAAAAGAAAGAAAG AGAAAAAAGAAAGAAAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38727155;END=38727166;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=6;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:65:0:0:0:37.48|27.52:0|0:79.45:-0.66:54:-1.86:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6641 chr21 38728472 GANGSTR_443901 AATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38728472;END=38728486;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6642 chr21 38729499 GANGSTR_443902 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38729499;END=38729510;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|26:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6643 chr21 38730060 GANGSTR_443903 TATTATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38730060;END=38730074;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6644 chr21 38731460 GANGSTR_443904 TCTGTTCTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38731460;END=38731469;PERIOD=5;NSKIP=0;NFILT=0;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:36:0:0:0:18.00|18.00:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6645 chr21 38731800 GANGSTR_443905 AATAAATAAATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38731800;END=38731819;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6646 chr21 38733174 GANGSTR_443906 CTCTCTCTCTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38733174;END=38733193;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6647 chr21 38734089 GANGSTR_443907 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38734089;END=38734100;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6648 chr21 38734459 GANGSTR_443908 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38734459;END=38734470;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6649 chr21 38744582 GANGSTR_443912 AAAACAAAACAAAACA AAAAAAAAACAAAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.97;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=38744582;END=38744596;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:54:0:0:1:23.30|30.70:0|0:78.06:-0.42:47:-0.42:-2|1;-1|14;0|11:-1|16;0|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6650 chr21 38748162 GANGSTR_443914 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38748162;END=38748173;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|38:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6651 chr21 38749323 GANGSTR_443915 GTGTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38749323;END=38749336;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:0|47:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6652 chr21 38749418 GANGSTR_443916 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38749418;END=38749429;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.00|29.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6653 chr21 38751365 GANGSTR_443917 GAGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38751365;END=38751372;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6654 chr21 38754096 GANGSTR_443918 CAAAAACAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38754096;END=38754107;PERIOD=6;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:1:1:22.50|28.50:0|0:.:0:.:0:0|38:-6|1;0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6655 chr21 38759432 GANGSTR_443919 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38759432;END=38759443;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:1:0:21.50|21.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6656 chr21 38766557 GANGSTR_443920 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38766557;END=38766568;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:5:28.00|28.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6657 chr21 38775060 GANGSTR_443921 CTTTCCCTTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38775060;END=38775071;PERIOD=6;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|36:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6658 chr21 38775803 GANGSTR_443922 GTGCAGTGGTGCAGTGGTGCAGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=38775803;END=38775826;PERIOD=8;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|22:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6659 chr21 38776450 GANGSTR_443923 TGTATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38776450;END=38776457;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6660 chr21 38782830 GANGSTR_443924 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38782830;END=38782841;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6661 chr21 38789492 GANGSTR_443925 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38789492;END=38789503;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6662 chr21 38791493 GANGSTR_443926 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38791493;END=38791504;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6663 chr21 38805347 GANGSTR_443927 ATATATATATATATATATATAT AAATATATATATATATATATAT . . INFRAME_PGEOM=1;INFRAME_UP=0.08;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=38805347;END=38805368;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=36;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:36:0:1:0:18.00|18.00:0|0:8.73:0:.:0:0|20;2|1:0|17;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6664 chr21 38822131 GANGSTR_443928 TCAAGTCAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38822131;END=38822140;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6665 chr21 38824721 GANGSTR_443929 TGGATGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38824721;END=38824728;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:1:21.00|21.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6666 chr21 38824957 GANGSTR_443930 GGGAAGGGAA GGTAAGGGAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38824957;END=38824966;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:47:0:0:0:15.51|31.49:0|0:35.96:-1.65:44:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6667 chr21 38825691 GANGSTR_443931 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38825691;END=38825702;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6668 chr21 38829700 GANGSTR_443932 TGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38829700;END=38829715;PERIOD=2;NSKIP=0;NFILT=0;DP=35;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:0:0:17.50|17.50:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6669 chr21 38830571 GANGSTR_443933 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=38830571;END=38830608;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6,8;DP=57;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-6|8:1:0.5:57:0:2:0:29.03|27.97:0|0:68.89:-0:33:-0.15:-10|1;-8|2;-6|16;-2|1;8|8:-8|1;-6|13;8|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6670 chr21 38835856 GANGSTR_443934 CCCTCCCTCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38835856;END=38835867;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6671 chr21 38837265 GANGSTR_443935 GAATGAATGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38837265;END=38837276;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6672 chr21 38839613 GANGSTR_443936 CCTCCTCCTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38839613;END=38839624;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6673 chr21 38840407 GANGSTR_443937 ACTTACTTACTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.03;START=38840407;END=38840418;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:1:22.00|22.00:0|0:.:0:.:0:0|34;1|1:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6674 chr21 38842448 GANGSTR_443938 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38842448;END=38842459;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6675 chr21 38846256 GANGSTR_443939 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38846256;END=38846267;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6676 chr21 38853620 GANGSTR_443940 GCAGGCAGGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38853620;END=38853631;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:25.94|29.06:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6677 chr21 38853691 GANGSTR_443941 TTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38853691;END=38853710;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6678 chr21 38855871 GANGSTR_443942 TTTGTTTTGTTTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38855871;END=38855895;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6679 chr21 38858483 GANGSTR_443943 TTAATTTAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38858483;END=38858492;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6680 chr21 38859147 GANGSTR_443944 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38859147;END=38859158;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6681 chr21 38864865 GANGSTR_443945 TTATATTATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38864865;END=38864874;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6682 chr21 38867455 GANGSTR_443947 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=38867455;END=38867504;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-14,-8;DP=58;DSNP=0;DSTUTTER=3;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-14|-8:1:0.5:58:0:3:1:31.12|26.88:0|0:35.36:-0.2:38:-0.28:-16|1;-14|18;-10|2;-8|8;-7|1:-14|18;-10|1;-8|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6683 chr21 38868343 GANGSTR_443948 ATGAATGAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38868343;END=38868354;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6684 chr21 38878293 GANGSTR_443949 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38878293;END=38878304;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:23.99|26.01:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6685 chr21 38881423 GANGSTR_443950 TTCCTTCCTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38881423;END=38881434;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6686 chr21 38893686 GANGSTR_443951 GAAGAAGAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38893686;END=38893697;PERIOD=3;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|59:0|57:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6687 chr21 38895211 GANGSTR_443952 GCAGCAGCAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38895211;END=38895222;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6688 chr21 38900005 GANGSTR_443953 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38900005;END=38900019;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6689 chr21 38904989 GANGSTR_443954 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38904989;END=38905003;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6690 chr21 38910208 GANGSTR_443955 TTATTATTATTATTATTATTATTATTATTATTATTATTATTATTA TTATTATTATTATTATTATTATTATTATTATTATTATTA,TTATTATTATTATTATTATTATTATTATTATTATTATTATTA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.09;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=38910208;END=38910252;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-6,-3;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-6|-3:1:0.5:45:0:0:0:20.81|24.19:0|0:3.71:-0.28:22:0:-6|8;-3|12:-6|8;-3|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6691 chr21 38915653 GANGSTR_443956 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38915653;END=38915664;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6692 chr21 38917686 GANGSTR_443957 TAAATAAATAAATAAA TAAAATAAATAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38917686;END=38917701;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-3:1:0.5:73:0:0:0:35.01|37.99:0|0:267.22:-0.1:55:-0.1:-3|23;0|17:-3|22;0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6693 chr21 38917812 GANGSTR_443958 TGTGTGTGTGTGTG TGTGTGTGTGTG . . INFRAME_PGEOM=0.94;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38917812;END=38917825;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:52:0:0:0:20.55|31.45:0|0:12.12:-1.1:47:-0.87:-2|29;0|16:-2|27;0|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6694 chr21 38921825 GANGSTR_443959 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38921825;END=38921839;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6695 chr21 38936184 GANGSTR_443960 CGTCCGCGTCCG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38936184;END=38936195;PERIOD=6;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6696 chr21 38941165 GANGSTR_443961 TTGTCATTGTCATTGTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38941165;END=38941182;PERIOD=6;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|48:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6697 chr21 38942841 GANGSTR_443962 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38942841;END=38942856;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6698 chr21 38945946 GANGSTR_443963 TAAATAAATAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38945946;END=38945965;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|40:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6699 chr21 38946063 GANGSTR_443964 AGGAAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38946063;END=38946070;PERIOD=4;NSKIP=0;NFILT=0;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:36:0:0:0:18.00|18.00:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6700 chr21 38953888 GANGSTR_443965 TGAAATGAAATGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38953888;END=38953902;PERIOD=5;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6701 chr21 38955280 GANGSTR_443966 GAGAGAGAGAGA . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38955280;END=38955291;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:1:0:28.00|28.00:0|0:.:0:.:0:0|47;2|1:0|46;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6702 chr21 38957892 GANGSTR_443967 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38957892;END=38957903;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|45:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6703 chr21 38959859 GANGSTR_443968 CATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38959859;END=38959870;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6704 chr21 38969371 GANGSTR_443969 TTTCTTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.1;START=38969371;END=38969386;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:5:29.00|29.00:0|0:.:0:.:0:-1|3;0|33;1|1:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6705 chr21 38979766 GANGSTR_443970 ATATATATATATATATATATT ATATATATATATATATATATATATATATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.13;START=38979766;END=38979785;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=8;DP=20;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|8:1:0.5:20:0:1:1:13.50|6.50:0|0:32.18:-0.84:17:0:-44|1;-1|1;0|8;8|2;10|1:0|6;8|2;10|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6706 chr21 38980621 GANGSTR_443971 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38980621;END=38980632;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|41:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6707 chr21 38988892 GANGSTR_443972 CATATATATATATATATATATATATAT CTTTTATATATATATATAT,CATATATATATATATATATATATAT . . INFRAME_PGEOM=0.94;INFRAME_UP=0.11;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=38988893;END=38988918;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-8,-2;DP=51;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-8|-2:1:0.5:51:0:3:0:31.49|19.51:0|0:13.96:-1.02:44:-0.12:-8|20;-6|1;-4|1;-2|7;0|1:-8|18;-6|1;-4|1;-2|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6708 chr21 38992757 GANGSTR_443974 TTCTTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=38992757;END=38992766;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6709 chr21 38996764 GANGSTR_443975 TCTTTCTTTCTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=38996764;END=38996779;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:2:37.00|37.00:0|0:.:0:.:0:-1|1;0|50:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6710 chr21 38998997 GANGSTR_443976 CATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38998997;END=38999004;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6711 chr21 38999278 GANGSTR_443977 CAGCCAGCCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=38999278;END=38999289;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|41:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6712 chr21 39005657 GANGSTR_443979 TGATGATGATGATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39005657;END=39005671;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6713 chr21 39007520 GANGSTR_443980 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39007520;END=39007531;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:1:23.50|23.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6714 chr21 39012151 GANGSTR_443981 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39012151;END=39012162;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6715 chr21 39012785 GANGSTR_443982 TTCCTTTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39012785;END=39012794;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:30.00|34.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6716 chr21 39025457 GANGSTR_443983 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39025457;END=39025468;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6717 chr21 39026508 GANGSTR_443984 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39026508;END=39026519;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6718 chr21 39027827 GANGSTR_443985 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39027827;END=39027838;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6719 chr21 39030268 GANGSTR_443986 CCTTGCCTTGCCTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39030268;END=39030282;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6720 chr21 39037565 GANGSTR_443987 TATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39037565;END=39037573;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|49:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6721 chr21 39043073 GANGSTR_443988 ACAAAACAAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39043073;END=39043087;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6722 chr21 39052989 GANGSTR_443990 TTGGACTTGGACTTGGAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39052989;END=39053006;PERIOD=6;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6723 chr21 39055757 GANGSTR_443991 CCTCCTCCTCCT CCTCCTCCTTCT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39055757;END=39055768;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:52:0:0:0:26.00|26.00:0|0:15.05:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6724 chr21 39055917 GANGSTR_443992 TTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39055917;END=39055924;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6725 chr21 39059619 GANGSTR_443993 GCAAGCAAGCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39059619;END=39059630;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6726 chr21 39070836 GANGSTR_443994 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39070836;END=39070847;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|39:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6727 chr21 39073698 GANGSTR_443995 TGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.97;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39073698;END=39073713;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=58;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:58:0:1:0:29.01|28.99:0|0:56.63:0:50:0:-32|1;-19|1;-2|1;0|25;4|21:-2|1;0|22;4|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6728 chr21 39076960 GANGSTR_443996 TCGTCATCATCATCATCATCATCATCA TTGTCATCATCATCATCATCATCATCATCATCA . . INFRAME_PGEOM=0.91;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39076963;END=39076986;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=6;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|6:1:0.5:55:0:0:0:29.00|26.00:0|0:116.72:-0.11:47:-0.11:0|25;6|11:0|19;6|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6729 chr21 39084848 GANGSTR_443999 CCTCCCTCCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=39084848;END=39084859;PERIOD=4;NSKIP=0;NFILT=0;DP=34;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:34:0:0:1:17.00|17.00:0|0:.:0:.:0:-4|1;0|21:0|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6730 chr21 39087447 GANGSTR_444000 AGAAAAGAAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39087447;END=39087461;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6731 chr21 39091624 GANGSTR_444001 CATTTCTTTCTTTC CGTTTCTTTCTTTC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39091626;END=39091637;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:50:0:0:0:26.01|23.99:0|0:70.29:-0.06:42:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6732 chr21 39100198 GANGSTR_444002 CAACAACAACAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=39100198;END=39100218;PERIOD=3;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|24:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6733 chr21 39108103 GANGSTR_444003 GTGGCAGTGGCAGTGGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39108103;END=39108120;PERIOD=6;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|36:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6734 chr21 39109766 GANGSTR_444004 GTTTGTTTGTTT GTTTGTTT . . INFRAME_PGEOM=0.93;INFRAME_UP=0.05;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39109766;END=39109777;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:56:0:0:0:35.20|20.80:0|0:15.42:-1.31:51:-0.25:-4|16;0|30:-4|16;0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6735 chr21 39112065 GANGSTR_444005 GGAGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39112065;END=39112072;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6736 chr21 39112167 GANGSTR_444006 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39112167;END=39112182;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6737 chr21 39114742 GANGSTR_444007 TGTTGTTGTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39114742;END=39114753;PERIOD=3;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:1:35.00|35.00:0|0:.:0:.:0:0|55:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6738 chr21 39115600 GANGSTR_444008 TATGTATGTATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39115600;END=39115611;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6739 chr21 39124220 GANGSTR_444009 TGAATGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39124220;END=39124235;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6740 chr21 39127776 GANGSTR_444010 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39127776;END=39127785;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6741 chr21 39128353 GANGSTR_444011 TGGATGGATGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39128353;END=39128364;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6742 chr21 39144659 GANGSTR_444014 ACACACACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39144659;END=39144676;PERIOD=2;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=1;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:1:3:34.50|34.50:0|0:.:0:.:0:-2|1;0|47:-2|1;0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6743 chr21 39147990 GANGSTR_444015 TCTGTTCTGTTCCG TCTGTTCTGTTCCA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39147990;END=39147999;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:60:0:0:0:39.02|20.98:0|0:58.92:-1.7:54:-0.11:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6744 chr21 39149648 GANGSTR_444016 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39149648;END=39149659;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:1:0:21.50|21.50:0|0:.:0:.:0:-4|1;0|31:-4|1;0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6745 chr21 39150824 GANGSTR_444017 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39150824;END=39150835;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|47:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6746 chr21 39161741 GANGSTR_444018 AGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39161741;END=39161752;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|50:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6747 chr21 39169367 GANGSTR_444019 CTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39169367;END=39169378;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:1:25.50|25.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6748 chr21 39174801 GANGSTR_444020 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39174801;END=39174812;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6749 chr21 39181136 GANGSTR_444021 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39181136;END=39181147;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|45:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6750 chr21 39181824 GANGSTR_444022 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39181824;END=39181835;PERIOD=3;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|27:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6751 chr21 39205311 GANGSTR_444023 TTTCTTTTCTTTTCT TTTCTTTTTTCTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.11;START=39205311;END=39205325;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:44:0:0:1:22.00|22.00:0|0:11.12:0:.:0:-3|3;-2|27;-1|1:-2|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6752 chr21 39208107 GANGSTR_444024 ACCCTAACCCTAACCCTAACCCTAACCCTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39208107;END=39208136;PERIOD=6;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6753 chr21 39218656 GANGSTR_444025 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=1;INFRAME_UP=0.13;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=39218656;END=39218707;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-14,-6;DP=65;DSNP=0;DSTUTTER=5;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-14|-6:1:0.5:65:0:5:2:32.43|32.57:0|0:59.58:0:35:0:-16|2;-14|14;-12|1;-8|2;-6|8:-16|1;-14|13;-12|1;-8|2;-6|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6754 chr21 39223270 GANGSTR_444026 TGATTCATTCATTCATTC TCATTCATTCATTCATTC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39223272;END=39223287;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=60;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:60:0:1:0:39.87|20.13:0|0:51.74:-2.04:54:-0.6:0|44:-4|1;0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6755 chr21 39228917 GANGSTR_444027 GAGAGAGAGAGAGAGAGA . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39228917;END=39228934;PERIOD=2;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:2:0:34.00|34.00:0|0:.:0:.:0:-2|2;0|46:-2|2;0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6756 chr21 39234689 GANGSTR_444029 GCATGCATGCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39234689;END=39234700;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6757 chr21 39237737 GANGSTR_444030 AGGAAAGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39237737;END=39237746;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6758 chr21 39241711 GANGSTR_444031 AGTTAGTTAGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39241711;END=39241722;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6759 chr21 39253381 GANGSTR_444032 AGGCAGGCAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39253381;END=39253392;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6760 chr21 39275214 GANGSTR_444033 CCTTCCTTCCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39275214;END=39275225;PERIOD=4;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|52:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6761 chr21 39276027 GANGSTR_444034 AAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39276027;END=39276046;PERIOD=5;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:0:1:40.00|40.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6762 chr21 39283260 GANGSTR_444035 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39283260;END=39283271;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|55:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6763 chr21 39286123 GANGSTR_444036 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39286123;END=39286134;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6764 chr21 39287742 GANGSTR_444038 TCTCCTCTCCTCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39287742;END=39287756;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6765 chr21 39289897 GANGSTR_444039 TACATACATACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39289897;END=39289908;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6766 chr21 39290648 GANGSTR_444040 ATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39290648;END=39290655;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6767 chr21 39301409 GANGSTR_444041 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39301409;END=39301420;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6768 chr21 39304431 GANGSTR_444042 TTTCTTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39304431;END=39304440;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6769 chr21 39306810 GANGSTR_444043 AACCAACCAACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39306810;END=39306821;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6770 chr21 39307853 GANGSTR_444044 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39307853;END=39307864;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|54:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6771 chr21 39308445 GANGSTR_444045 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39308445;END=39308459;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:3:30.00|30.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6772 chr21 39310368 GANGSTR_444046 ATATATATATATAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39310368;END=39310381;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:1:0:31.00|31.00:0|0:.:0:.:0:0|42;2|1:0|39;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6773 chr21 39312269 GANGSTR_444047 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39312269;END=39312283;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6774 chr21 39312548 GANGSTR_444048 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39312548;END=39312559;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|42:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6775 chr21 39312946 GANGSTR_444049 TCCCTCCCTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39312946;END=39312957;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6776 chr21 39314426 GANGSTR_444050 CCATCCATCCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39314426;END=39314437;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6777 chr21 39320042 GANGSTR_444051 TTATTATTATTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39320042;END=39320065;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|35:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6778 chr21 39328292 GANGSTR_444052 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39328292;END=39328303;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6779 chr21 39331905 GANGSTR_444053 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39331905;END=39331919;PERIOD=5;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:2:21.50|21.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6780 chr21 39341135 GANGSTR_444054 TTGTGTTTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39341135;END=39341146;PERIOD=6;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|46:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6781 chr21 39349462 GANGSTR_444056 AAGCAAAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39349462;END=39349471;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6782 chr21 39351664 GANGSTR_444057 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39351664;END=39351675;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6783 chr21 39369758 GANGSTR_444059 GAGAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39369758;END=39369771;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|38:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6784 chr21 39372204 GANGSTR_444060 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39372204;END=39372219;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6785 chr21 39378601 GANGSTR_444061 GTGATGTGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39378601;END=39378610;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6786 chr21 39383109 GANGSTR_444062 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39383109;END=39383120;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6787 chr21 39385593 GANGSTR_444063 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39385593;END=39385604;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6788 chr21 39388263 GANGSTR_444064 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39388263;END=39388277;PERIOD=5;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6789 chr21 39394365 GANGSTR_444065 ACACACACACACACACACACACACACACACACACT ACACACACACACACACACACACACACACACACACA,ACACACACACACACACACACACACACACACACACACT . . INFRAME_PGEOM=0.98;INFRAME_UP=0.08;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=39394365;END=39394398;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0,2;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:0|2:1:0.5:65:0:0:0:34.45|30.55:0|0:9.39:-0.18:46:-0.11:-6|1;0|9;2|6:0|9;2|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6790 chr21 39397405 GANGSTR_444066 CATCATCATCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39397405;END=39397416;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6791 chr21 39407114 GANGSTR_444067 AAATAAATAAATAAATAAATT AAATAAATAAATAAATAAATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39407114;END=39407133;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:70:0:0:0:34.00|36.00:0|0:98.82:-0.05:56:-0.22:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6792 chr21 39410963 GANGSTR_444068 GTATGTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39410963;END=39410970;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6793 chr21 39413577 GANGSTR_444069 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39413577;END=39413588;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6794 chr21 39419678 GANGSTR_444070 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39419678;END=39419689;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:2:0:30.00|30.00:0|0:.:0:.:0:-2|2;0|44:-2|2;0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6795 chr21 39423579 GANGSTR_444071 ATCCATCCATCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39423579;END=39423590;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6796 chr21 39425114 GANGSTR_444072 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39425114;END=39425128;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6797 chr21 39425509 GANGSTR_444073 CACACACACACACACACACACACACACACACA CACACACACACACACACACACACACACACACACACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39425509;END=39425540;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=56;DSNP=0;DSTUTTER=4;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:56:0:4:1:30.52|25.48:0|0:20.42:-0.22:32:-0.51:-14|1;-2|1;0|16;2|2;4|10:-2|1;0|14;2|2;4|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6798 chr21 39425986 GANGSTR_444074 TGGAGCTGGAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39425986;END=39425997;PERIOD=6;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|32:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6799 chr21 39427574 GANGSTR_444075 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39427574;END=39427585;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6800 chr21 39430556 GANGSTR_444076 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39430556;END=39430567;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6801 chr21 39437757 GANGSTR_444077 ATCAATCAATCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39437757;END=39437768;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6802 chr21 39438344 GANGSTR_444078 CTAACCCTAACCCTAACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39438344;END=39438361;PERIOD=6;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:1:25.50|25.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6803 chr21 39439176 GANGSTR_444079 AAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39439176;END=39439195;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6804 chr21 39440414 GANGSTR_444080 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39440414;END=39440425;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6805 chr21 39445523 GANGSTR_444081 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39445523;END=39445534;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6806 chr21 39451893 GANGSTR_444082 AGGAAGGAAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39451893;END=39451904;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6807 chr21 39457843 GANGSTR_444083 ATATGTATATATGTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39457843;END=39457858;PERIOD=8;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|36:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6808 chr21 39459348 GANGSTR_444084 TCTTTCTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39459348;END=39459359;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:26.99|37.01:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6809 chr21 39460059 GANGSTR_444085 ATATTATATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39460059;END=39460068;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6810 chr21 39461654 GANGSTR_444086 GCAAGCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39461654;END=39461661;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6811 chr21 39463652 GANGSTR_444087 AATAAAATAAAATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39463652;END=39463671;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:1:33.50|33.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6812 chr21 39464166 GANGSTR_444088 TCCCTCCCTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39464166;END=39464177;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6813 chr21 39464869 GANGSTR_444089 TATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39464869;END=39464884;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6814 chr21 39465903 GANGSTR_444090 TGAAATGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39465903;END=39465912;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6815 chr21 39466754 GANGSTR_444091 TTGGTTGGTTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39466754;END=39466765;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6816 chr21 39469091 GANGSTR_444092 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39469091;END=39469102;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6817 chr21 39469832 GANGSTR_444093 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39469832;END=39469843;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6818 chr21 39474470 GANGSTR_444094 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39474470;END=39474481;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|40:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6819 chr21 39478042 GANGSTR_444095 TTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39478042;END=39478053;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6820 chr21 39490263 GANGSTR_444097 AACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39490263;END=39490271;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6821 chr21 39493079 GANGSTR_444098 ACACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39493079;END=39493094;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6822 chr21 39494469 GANGSTR_444099 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39494469;END=39494480;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6823 chr21 39498785 GANGSTR_444100 ACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39498785;END=39498810;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|6:1:0.5:53:0:0:1:30.49|22.51:0|0:47.68:-0.61:36:-0.15:-3|2;0|20;4|1;6|12:0|19;6|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6824 chr21 39503481 GANGSTR_444101 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39503481;END=39503492;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|54:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6825 chr21 39507971 GANGSTR_444102 AAACAAACAAAC AAACAAACAAACAAAC . . INFRAME_PGEOM=0.96;INFRAME_UP=0.03;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39507971;END=39507982;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:52:0:0:0:29.42|22.58:0|0:8.98:-0.76:35:-0.16:-3|1;0|23;4|11:0|22;4|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6826 chr21 39510802 GANGSTR_444103 CAAAAACAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39510802;END=39510813;PERIOD=6;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|44:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6827 chr21 39517443 GANGSTR_444104 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39517443;END=39517454;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6828 chr21 39523389 GANGSTR_444105 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39523389;END=39523400;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6829 chr21 39526463 GANGSTR_444106 GTTTTGTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39526463;END=39526472;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6830 chr21 39526665 GANGSTR_444107 TTAAATTAAATTAAATTAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39526665;END=39526684;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6831 chr21 39529249 GANGSTR_444108 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39529249;END=39529264;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6832 chr21 39537066 GANGSTR_444109 GGGAGGGAGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39537066;END=39537077;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6833 chr21 39538808 GANGSTR_444110 AGGAGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39538808;END=39538819;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6834 chr21 39539921 GANGSTR_444111 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39539921;END=39539932;PERIOD=2;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|54:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6835 chr21 39541706 GANGSTR_444112 TGCAATGCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39541706;END=39541715;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6836 chr21 39548227 GANGSTR_444113 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39548227;END=39548238;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|44:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6837 chr21 39548986 GANGSTR_444114 GAAGGAAGGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39548986;END=39548997;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6838 chr21 39550994 GANGSTR_444115 AGCAGCAGCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39550994;END=39551005;PERIOD=3;NSKIP=0;NFILT=0;DP=33;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:33:0:0:0:16.50|16.50:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6839 chr21 39557089 GANGSTR_444116 AAAACAAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39557089;END=39557113;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6840 chr21 39564920 GANGSTR_444117 TTATTTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39564920;END=39564939;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6841 chr21 39567950 GANGSTR_444118 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39567950;END=39567961;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|50:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6842 chr21 39568588 GANGSTR_444119 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39568588;END=39568599;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6843 chr21 39571875 GANGSTR_444120 TGTTTGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39571875;END=39571890;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|53:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6844 chr21 39571994 GANGSTR_444121 TTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39571994;END=39572005;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6845 chr21 39573663 GANGSTR_444122 ATATCTATATCTATATCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39573663;END=39573680;PERIOD=6;NSKIP=0;NFILT=0;DP=84;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:84:0:0:0:42.00|42.00:0|0:.:0:.:0:0|47:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6846 chr21 39580744 GANGSTR_444125 TGTTGTTGTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39580744;END=39580755;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|41:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6847 chr21 39606250 GANGSTR_444126 TTCTTCTTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39606250;END=39606261;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6848 chr21 39607487 GANGSTR_444127 CAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39607487;END=39607494;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6849 chr21 39610800 GANGSTR_444128 TCTCTCTCTCTC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39610800;END=39610811;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:1:0:30.95|26.05:0|0:.:0:.:0:-2|1;0|40:-2|1;0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6850 chr21 39617492 GANGSTR_444129 AAAGAAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39617492;END=39617507;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6851 chr21 39617653 GANGSTR_444130 AAGGAAGGAAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39617653;END=39617664;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6852 chr21 39621016 GANGSTR_444131 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39621016;END=39621027;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6853 chr21 39628283 GANGSTR_444132 TATATATATATATATATATA TATATATGTATATATATATATATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.6;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.1;START=39628283;END=39628302;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=35;DSNP=0;DSTUTTER=4;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:35:0:4:0:17.50|17.50:0|0:3.77:0:.:0:-1|1;4|15;14|1;16|1:4|13;14|1;16|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6854 chr21 39628546 GANGSTR_444133 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39628546;END=39628557;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6855 chr21 39635827 GANGSTR_444134 ACACACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39635827;END=39635844;PERIOD=2;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:0:38.50|38.50:0|0:.:0:.:0:0|59:0|57:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6856 chr21 39638054 GANGSTR_444135 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39638054;END=39638069;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6857 chr21 39641154 GANGSTR_444136 AAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39641154;END=39641173;PERIOD=5;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6858 chr21 39646739 GANGSTR_444137 TCCTCTCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39646739;END=39646748;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6859 chr21 39648950 GANGSTR_444138 TGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39648950;END=39648969;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=70;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:70:0:1:0:35.00|35.00:0|0:15.31:0:.:0:-15|2;0|1;3|1;4|44:4|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6860 chr21 39662912 GANGSTR_444139 GGCTAAACACACACACACACACACACACACACACAC GAGCTAAACACACACACACACACACACACACACACAT . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39662918;END=39662947;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=1;DP=57;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:1|1:1:1:57:0:1:1:28.50|28.50:0|0:14.82:0:.:0:-2|1;0|25:-1|1;1|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6861 chr21 39667075 GANGSTR_444140 TATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39667075;END=39667083;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:1:25.50|25.50:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6862 chr21 39668978 GANGSTR_444141 GAGGGAGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39668978;END=39668989;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6863 chr21 39672969 GANGSTR_444142 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39672969;END=39672983;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:1:32.00|32.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6864 chr21 39675570 GANGSTR_444143 ATGAATGAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39675570;END=39675581;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6865 chr21 39677074 GANGSTR_444144 CACTTCACTTCACTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39677074;END=39677088;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6866 chr21 39681923 GANGSTR_444145 TTCTTTTCTTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.03;START=39681923;END=39681937;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:2:21.70|29.30:0|0:.:0:.:0:0|25;1|1:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6867 chr21 39685146 GANGSTR_444146 TTGCTTTGCTTTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39685146;END=39685160;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6868 chr21 39685391 GANGSTR_444147 CATCATCATCATCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39685391;END=39685405;PERIOD=3;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|34:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6869 chr21 39687957 GANGSTR_444148 AAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39687957;END=39687964;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6870 chr21 39689919 GANGSTR_444149 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39689919;END=39689930;PERIOD=2;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6871 chr21 39699506 GANGSTR_444151 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=39699506;END=39699517;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6872 chr21 39706809 GANGSTR_444152 GCTGCCGCTGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39706809;END=39706820;PERIOD=6;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|37:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6873 chr21 39719025 GANGSTR_444153 AACAAACAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39719025;END=39719036;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.01|28.99:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6874 chr21 39723637 GANGSTR_444154 GAGAGAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39723637;END=39723652;PERIOD=2;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|29:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6875 chr21 39723786 GANGSTR_444155 GAGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39723786;END=39723793;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:25.50|20.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6876 chr21 39726572 GANGSTR_444156 ACACACACACACACACACAC ACACACACACACACACACACACAC . . INFRAME_PGEOM=0.94;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39726572;END=39726591;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=49;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:49:0:2:0:24.66|24.34:0|0:32.38:0:36:0:-17|1;0|20;2|3;4|14:0|16;2|2;4|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6877 chr21 39728623 GANGSTR_444157 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39728623;END=39728634;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:2:24.50|24.50:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6878 chr21 39734878 GANGSTR_444158 ATTTATTTATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39734878;END=39734901;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|29:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6879 chr21 39737152 GANGSTR_444159 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39737152;END=39737166;PERIOD=5;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6880 chr21 39738282 GANGSTR_444160 TGGGTGGGTGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39738282;END=39738293;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:21.50|26.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6881 chr21 39738431 GANGSTR_444161 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39738431;END=39738442;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6882 chr21 39740166 GANGSTR_444162 GTTTGTTTGTTTTGC GTTTGTTTGTTTTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39740166;END=39740177;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:73:0:0:1:36.50|36.50:0|0:117.65:0:66:0:0|56:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6883 chr21 39744456 GANGSTR_444163 TATTATATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39744456;END=39744465;PERIOD=5;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6884 chr21 39746773 GANGSTR_444164 GTTTTGTTTTGTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39746773;END=39746787;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6885 chr21 39747912 GANGSTR_444165 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39747912;END=39747923;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6886 chr21 39749140 GANGSTR_444166 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39749140;END=39749151;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:33.50|29.50:0|0:.:0:.:0:0|43:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6887 chr21 39751785 GANGSTR_444167 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39751785;END=39751796;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6888 chr21 39752918 GANGSTR_444168 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39752918;END=39752929;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|57:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6889 chr21 39768841 GANGSTR_444169 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=39768841;END=39768852;PERIOD=2;NSKIP=0;NFILT=0;DP=25;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:25:0:0:0:12.50|12.50:0|0:.:0:.:0:0|18:0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6890 chr21 39775945 GANGSTR_444170 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39775945;END=39775956;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6891 chr21 39776079 GANGSTR_444171 ACAACAACAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39776079;END=39776090;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6892 chr21 39776917 GANGSTR_444172 CTTCCTTCCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39776917;END=39776928;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6893 chr21 39778537 GANGSTR_444173 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39778537;END=39778551;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6894 chr21 39778994 GANGSTR_444174 ACAACACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39778994;END=39779003;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6895 chr21 39783235 GANGSTR_444176 ATTTTATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39783235;END=39783254;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6896 chr21 39785375 GANGSTR_444177 ATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39785375;END=39785382;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6897 chr21 39789712 GANGSTR_444179 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39789712;END=39789727;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6898 chr21 39790193 GANGSTR_444180 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.7;INFRAME_UP=0.05;INFRAME_DOWN=0.17;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=39790193;END=39790224;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6,8;DP=47;DSNP=0;DSTUTTER=3;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:6|8:1:0.5:47:0:3:1:21.41|25.59:0|0:48.16:-0.21:36:-0.3:-29|3;-11|1;-6|1;-2|1;0|3;4|1;6|11;8|10:4|1;6|9;8|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6899 chr21 39795904 GANGSTR_444181 AAAAGAAAAGAAAAGAAAAG AAAAGAAAAGAAAAGAAAAGAAAAG . . INFRAME_PGEOM=0.96;INFRAME_UP=0.04;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39795904;END=39795923;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=5;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|5:1:0.5:70:0:0:1:37.46|32.54:0|0:15.49:-0.42:47:-0.42:-31|1;-3|1;0|24;5|13:0|22;5|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6900 chr21 39796104 GANGSTR_444182 CTCGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT,CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=39796110;END=39796147;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4,-4;DP=50;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|-4:1:0.5:50:0:2:0:27.70|22.30:0|0:29.17:-0.31:33:-0.54:-4|17;0|1:-6|1;-4|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6901 chr21 39801168 GANGSTR_444183 GTGTGTGTGTGT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.02;START=39801168;END=39801179;PERIOD=2;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:2:1:35.50|35.50:0|0:.:0:.:0:-2|1;0|50;1|1:-4|1;-2|1;0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6902 chr21 39801665 GANGSTR_444184 ATATACACACACACACACACAC ATACACACACACACACACACACAC,ACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.98;INFRAME_UP=0.07;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39801669;END=39801686;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2,4;DP=68;DSNP=0;DSTUTTER=2;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:2|4:1:0.5:68:0:2:2:30.98|37.02:0|0:119.71:-0.3:56:-1.52:-1|2;0|33;2|16;4|1:0|1;2|16;4|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6903 chr21 39804007 GANGSTR_444185 GATTTGATTTGATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39804007;END=39804021;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6904 chr21 39810346 GANGSTR_444186 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39810346;END=39810357;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6905 chr21 39814515 GANGSTR_444187 TCTTTCTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39814515;END=39814526;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:30.00|29.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6906 chr21 39828345 GANGSTR_444189 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39828345;END=39828356;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6907 chr21 39830688 GANGSTR_444190 TACTTACTTACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39830688;END=39830699;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6908 chr21 39832602 GANGSTR_444191 CCCACCCACCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39832602;END=39832613;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6909 chr21 39833721 GANGSTR_444192 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39833721;END=39833732;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|51:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6910 chr21 39834206 GANGSTR_444193 TTGTTATTGTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39834206;END=39834217;PERIOD=6;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6911 chr21 39837320 GANGSTR_444194 GAGGGAGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39837320;END=39837331;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6912 chr21 39839414 GANGSTR_444195 GGAGGAGGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39839414;END=39839425;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|47:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6913 chr21 39855031 GANGSTR_444196 AACAAACAAACAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39855031;END=39855046;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6914 chr21 39855614 GANGSTR_444197 ACAAACAAACAAACAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39855614;END=39855633;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6915 chr21 39859383 GANGSTR_444198 AAATAAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39859383;END=39859392;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6916 chr21 39859808 GANGSTR_444199 TTCAATTCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39859808;END=39859817;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6917 chr21 39864797 GANGSTR_444200 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39864797;END=39864808;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|47:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6918 chr21 39879459 GANGSTR_444201 TGAATGAATGAATGAATGAATGAATGAA TGAATGAATGAATGAATGAATGAATGAATGAATGAA . . INFRAME_PGEOM=1;INFRAME_UP=0.07;INFRAME_DOWN=0.28;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39879459;END=39879486;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=8;DP=60;DSNP=0;DSTUTTER=12;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:8|8:1:1:60:0:12:0:30.00|30.00:0|0:10.06:0:.:0:-9|1;0|5;4|8;8|15:4|9;8|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6919 chr21 39880359 GANGSTR_444202 ATGAGTGGATGAGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39880359;END=39880374;PERIOD=8;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:3:35.50|35.50:0|0:.:0:.:0:0|43:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6920 chr21 39886686 GANGSTR_444204 GAAATGAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39886686;END=39886695;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6921 chr21 39896668 GANGSTR_444205 AAAGAAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39896668;END=39896683;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6922 chr21 39897885 GANGSTR_444206 AATAATAATAATACT AATAATAATAATACC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39897885;END=39897896;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:64:0:0:0:30.04|33.96:0|0:103.71:-0.16:60:-1.68:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6923 chr21 39904233 GANGSTR_444207 CCCACCCACCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39904233;END=39904244;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6924 chr21 39905936 GANGSTR_444208 CACTTCACTTCACTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39905936;END=39905950;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6925 chr21 39908892 GANGSTR_444209 AATAGAATAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39908892;END=39908901;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6926 chr21 39913837 GANGSTR_444210 AAATTAAATTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39913837;END=39913851;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6927 chr21 39915446 GANGSTR_444212 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39915446;END=39915457;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6928 chr21 39932096 GANGSTR_444213 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39932096;END=39932107;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6929 chr21 39933744 GANGSTR_444214 ACAAACAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39933744;END=39933755;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6930 chr21 39934132 GANGSTR_444215 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39934132;END=39934143;PERIOD=2;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6931 chr21 39936500 GANGSTR_444216 TCTCTCTCTCTC TCTCTCTCTCTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.94;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.07;START=39936500;END=39936511;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:56:0:0:4:28.00|28.00:0|0:13.9:0:.:0:-1|2;0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6932 chr21 39945649 GANGSTR_444217 GCCGGTGCCGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39945649;END=39945660;PERIOD=6;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:2:29.50|29.50:0|0:.:0:.:0:0|36:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6933 chr21 39953511 GANGSTR_444218 AGGAGAGGAGAGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39953511;END=39953525;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:29.42|36.58:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6934 chr21 39960241 GANGSTR_444220 CCACCACCACCACCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39960241;END=39960255;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6935 chr21 39961209 GANGSTR_444221 AGCAGCAGCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39961209;END=39961220;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|38:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6936 chr21 39964496 GANGSTR_444222 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=39964496;END=39964531;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4,2;DP=55;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|2:1:0.5:55:0:1:0:27.53|27.47:0|0:20.17:0:30:0:-21|1;-16|1;-9|2;-4|14;0|1;2|10:-4|14;2|8;4|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6937 chr21 39969653 GANGSTR_444223 TCCTTCCTTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39969653;END=39969664;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6938 chr21 39978245 GANGSTR_444225 GATAGATAGATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39978245;END=39978256;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6939 chr21 39982449 GANGSTR_444226 GCGTGTGTGTGTGTGTGTGTGTGTGT GCGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.99;INFRAME_UP=0.08;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39982451;END=39982474;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,0;DP=55;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|0:1:0.5:55:0:1:0:28.48|26.52:0|0:16.66:-0.06:44:-0.44:-2|10;0|22:-2|12;0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6940 chr21 39983650 GANGSTR_444227 TGTCTGTCTGTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39983650;END=39983661;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6941 chr21 39987451 GANGSTR_444228 GTTCTGGTTCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39987451;END=39987462;PERIOD=6;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|39:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6942 chr21 39993071 GANGSTR_444229 ATGGGATGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39993071;END=39993080;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6943 chr21 39994343 GANGSTR_444230 CACACACACACACACA CACACCACACACACACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39994343;END=39994358;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=1;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:1|1:1:1:54:0:1:0:27.00|27.00:0|0:13.84:0:.:0:1|40:1|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6944 chr21 39995246 GANGSTR_444231 CACACACACACACACACACACA CACACACACACACACACA . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39995246;END=39995267;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=44;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:44:0:1:0:22.00|22.00:0|0:8.41:0:.:0:-6|1;-4|25:-6|1;-4|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6945 chr21 39996889 GANGSTR_444232 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39996889;END=39996900;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|55:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6946 chr21 39998601 GANGSTR_444233 TTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=39998601;END=39998612;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6947 chr21 39998698 GANGSTR_444234 ATTGATTGATTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=39998698;END=39998709;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6948 chr21 40004537 GANGSTR_444235 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=40004537;END=40004548;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:1:24.50|24.50:0|0:.:0:.:0:-1|1;0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6949 chr21 40007499 GANGSTR_444236 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40007499;END=40007510;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6950 chr21 40009123 GANGSTR_444237 TGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40009123;END=40009138;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6951 chr21 40009579 GANGSTR_444238 TAATAATAATAA TAATAATAATAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40009579;END=40009590;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:67:0:0:0:35.45|31.55:0|0:93.59:-0.16:56:-0.1:0|49:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6952 chr21 40009741 GANGSTR_444239 GTGTGTGTGTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40009741;END=40009760;PERIOD=2;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6953 chr21 40018711 GANGSTR_444240 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40018711;END=40018722;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6954 chr21 40035276 GANGSTR_444241 GAGAGAGAGAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40035276;END=40035295;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|37:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6955 chr21 40041080 GANGSTR_444242 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40041080;END=40041099;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6956 chr21 40045692 GANGSTR_444243 TTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTG TTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTG . . INFRAME_PGEOM=0.97;INFRAME_UP=0.26;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40045692;END=40045736;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-5;DP=70;DSNP=0;DSTUTTER=9;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-5|-5:1:1:70:0:9:0:35.00|35.00:0|0:3.76:0:.:0:-5|20;0|7:-5|20;0|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6957 chr21 40049749 GANGSTR_444244 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40049749;END=40049763;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6958 chr21 40054634 GANGSTR_444245 TAATTAATTAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40054634;END=40054645;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|40:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6959 chr21 40057212 GANGSTR_444246 AAATAAATAAATAAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=40057212;END=40057243;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|20:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6960 chr21 40057517 GANGSTR_444247 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40057517;END=40057528;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:1:26.49|15.51:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6961 chr21 40062684 GANGSTR_444248 AAAGTAAAAGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40062684;END=40062695;PERIOD=6;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|40:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6962 chr21 40063306 GANGSTR_444249 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40063306;END=40063317;PERIOD=3;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:2:24.00|24.00:0|0:.:0:.:0:0|42:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6963 chr21 40065335 GANGSTR_444250 ATCCATCCATCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40065335;END=40065346;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6964 chr21 40067220 GANGSTR_444251 GTGTGTGTGTGTGT . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40067220;END=40067233;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:1:0:25.00|25.00:0|0:.:0:.:0:0|42;2|1:0|40;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6965 chr21 40068014 GANGSTR_444252 AGAAAGAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40068014;END=40068025;PERIOD=6;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|43:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6966 chr21 40068839 GANGSTR_444253 ACCACCACCACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40068839;END=40068850;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6967 chr21 40070935 GANGSTR_444254 GTGGGTGGGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40070935;END=40070946;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6968 chr21 40075097 GANGSTR_444256 ATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40075097;END=40075110;PERIOD=2;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6969 chr21 40076680 GANGSTR_444257 GAAAAAGAAAAAGAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40076680;END=40076697;PERIOD=6;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6970 chr21 40079327 GANGSTR_444259 ATATATATATAT ATATATATATATAT . . INFRAME_PGEOM=0.98;INFRAME_UP=0.1;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=40079327;END=40079338;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=24;DSNP=0;DSTUTTER=5;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:0.71:0.71:24:0:5:0:12.00|12.00:0|0:0.39:0:.:0:0|5;2|12:0|4;2|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6971 chr21 40079878 GANGSTR_444260 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40079878;END=40079893;PERIOD=4;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:0:39.50|39.50:0|0:.:0:.:0:0|55:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6972 chr21 40081228 GANGSTR_444261 GTTTGTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40081228;END=40081243;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|45:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6973 chr21 40084302 GANGSTR_444262 GAAAGAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40084302;END=40084313;PERIOD=6;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6974 chr21 40086236 GANGSTR_444263 GTTTTTGTTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40086236;END=40086247;PERIOD=6;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6975 chr21 40086718 GANGSTR_444264 TCATCATCATCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40086718;END=40086729;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6976 chr21 40091698 GANGSTR_444265 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40091698;END=40091713;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6977 chr21 40092448 GANGSTR_444266 CCTTCCCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40092448;END=40092457;PERIOD=5;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6978 chr21 40094076 GANGSTR_444267 TGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=40094076;END=40094085;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:4:26.00|26.00:0|0:.:0:.:0:-1|2;0|36:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6979 chr21 40097673 GANGSTR_444269 ACACACACACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40097673;END=40097692;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:1:0:28.50|28.50:0|0:.:0:.:0:-2|1;0|36:-2|1;0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6980 chr21 40100356 GANGSTR_444270 TCATTCTTTTGTTTTGTTTTGTTTTG TTATTCTTTTGTTTTGTTTTGTTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40100362;END=40100381;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:63:0:0:0:28.00|35.00:0|0:74.47:-0.41:49:-0.4:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6981 chr21 40102758 GANGSTR_444271 ATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40102758;END=40102771;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:28.00|34.00:0|0:.:0:.:0:0|43:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6982 chr21 40105466 GANGSTR_444272 TTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTG TTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTG . . INFRAME_PGEOM=0.97;INFRAME_UP=0.08;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=40105466;END=40105510;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-5;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-5:1:0.5:62:0:0:0:31.06|30.94:0|0:5.99:0:26:-0.62:-5|11;0|11:-5|11;0|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6983 chr21 40118729 GANGSTR_444274 CTCTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40118729;END=40118742;PERIOD=2;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6984 chr21 40122708 GANGSTR_444275 AAACAAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40122708;END=40122731;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6985 chr21 40125493 GANGSTR_444276 AAGAAGAAGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40125493;END=40125504;PERIOD=3;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:0:38.50|38.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6986 chr21 40128313 GANGSTR_444277 TTTTGTTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40128313;END=40128337;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6987 chr21 40129530 GANGSTR_444278 ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT ATTTATTTATTTATTTATTTATTTATTTATTTATTT . . INFRAME_PGEOM=0.98;INFRAME_UP=0.08;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=40129530;END=40129569;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:56:0:0:0:27.47|28.53:0|0:3.66:-0.09:18:-0.49:-4|10;0|7:-4|9;0|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6988 chr21 40129811 GANGSTR_444279 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40129811;END=40129822;PERIOD=3;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:1:1:34.50|34.50:0|0:.:0:.:0:-12|1;0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6989 chr21 40138857 GANGSTR_444280 AAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40138857;END=40138876;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:3:32.00|32.00:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6990 chr21 40142411 GANGSTR_444281 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40142411;END=40142422;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6991 chr21 40144967 GANGSTR_444282 AAGAAGAAGAAGAAG AAGAAGAAGAAG . . INFRAME_PGEOM=0.97;INFRAME_UP=0.04;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40144967;END=40144981;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-3:1:0.5:53:0:0:0:23.73|29.27:0|0:10.12:-0.47:39:-0.96:-3|23;0|15:-3|22;0|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6992 chr21 40151909 GANGSTR_444283 AGAAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40151909;END=40151918;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6993 chr21 40154585 GANGSTR_444284 TCTTTCTTTCTTTCTTTCTT TCTTTCTTTCTTTCTTTCTTTTTTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.35;OUTFRAME_UP=0.08;OUTFRAME_DOWN=0.03;START=40154585;END=40154604;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=6;DP=52;DSNP=0;DSTUTTER=3;DFLANKINDEL=5;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|6:1:0.5:52:0:3:5:29.26|22.74:0|0:38.4:-0.41:34:-1.76:0|21;3|2;5|6;6|5:0|19;6|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6994 chr21 40157814 GANGSTR_444285 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40157814;END=40157825;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6995 chr21 40164430 GANGSTR_444286 GGAGAGGGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40164430;END=40164441;PERIOD=6;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6996 chr21 40164546 GANGSTR_444287 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40164546;END=40164557;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6997 chr21 40177760 GANGSTR_444288 CCTCCCCTCCCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40177760;END=40177774;PERIOD=5;NSKIP=0;NFILT=0;DP=35;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:0:0:17.50|17.50:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6998 chr21 40181673 GANGSTR_444289 CCAGCCAGCCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40181673;END=40181684;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
6999 chr21 40188643 GANGSTR_444291 TGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40188643;END=40188650;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7000 chr21 40190914 GANGSTR_444292 TGTATGTATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40190914;END=40190925;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|45:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7001 chr21 40192245 GANGSTR_444293 GTTTTTGTTTTTGTTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40192245;END=40192262;PERIOD=6;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|33:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7002 chr21 40195548 GANGSTR_444294 TGTTTGTTTGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40195548;END=40195567;PERIOD=4;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:2:38.00|38.00:0|0:.:0:.:0:0|51:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7003 chr21 40199140 GANGSTR_444295 TGGTGGTGGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40199140;END=40199151;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7004 chr21 40200023 GANGSTR_444296 AGGGAAGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40200023;END=40200032;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:1:36.00|36.00:0|0:.:0:.:0:0|52;14|1:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7005 chr21 40200104 GANGSTR_444297 GCCTGCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40200104;END=40200111;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:22.46|20.54:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7006 chr21 40205889 GANGSTR_444298 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40205889;END=40205900;PERIOD=3;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|49:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7007 chr21 40224262 GANGSTR_444300 CAAACAAACAAACAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40224262;END=40224289;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7008 chr21 40226792 GANGSTR_444301 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40226792;END=40226803;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7009 chr21 40227590 GANGSTR_444302 AGAGATAGAGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40227590;END=40227601;PERIOD=6;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|36:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7010 chr21 40228007 GANGSTR_444303 GTTTTGTTTTGTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40228007;END=40228021;PERIOD=5;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:36.01|38.99:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7011 chr21 40233946 GANGSTR_444304 TCATCATCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40233946;END=40233954;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7012 chr21 40235816 GANGSTR_444305 TGTTGTTGTTGTTGC TGTTGTTGTTGTTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40235816;END=40235827;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:62:0:0:0:31.00|31.00:0|0:15.64:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7013 chr21 40239541 GANGSTR_444307 AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT . . INFRAME_PGEOM=0.94;INFRAME_UP=0.07;INFRAME_DOWN=0.19;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=40239541;END=40239596;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=59;DSNP=0;DSTUTTER=7;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:59:0:7:0:29.50|29.50:0|0:3.78:0:.:0:-8|6;-4|8:-8|4;-4|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7014 chr21 40244064 GANGSTR_444308 CTTTTTCTTTTTCTTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40244064;END=40244081;PERIOD=6;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7015 chr21 40255197 GANGSTR_444309 TCTATCTATCTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40255197;END=40255208;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7016 chr21 40269104 GANGSTR_444310 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40269104;END=40269118;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7017 chr21 40273898 GANGSTR_444311 GAGGAGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40273898;END=40273906;PERIOD=3;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|57:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7018 chr21 40276072 GANGSTR_444312 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.94;INFRAME_UP=0.04;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=40276072;END=40276105;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=68;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:68:0:2:1:34.00|34.00:0|0:6.75:0:.:0:-4|2;-2|23:-4|1;-2|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7019 chr21 40276729 GANGSTR_444313 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40276729;END=40276740;PERIOD=3;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7020 chr21 40285200 GANGSTR_444314 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40285200;END=40285211;PERIOD=3;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7021 chr21 40285606 GANGSTR_444315 AGGGAGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40285606;END=40285617;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7022 chr21 40288530 GANGSTR_444316 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40288530;END=40288541;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7023 chr21 40288641 GANGSTR_444317 AGGGAGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40288641;END=40288652;PERIOD=4;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|25:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7024 chr21 40289193 GANGSTR_444318 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40289193;END=40289204;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7025 chr21 40290912 GANGSTR_444319 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40290912;END=40290923;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7026 chr21 40297450 GANGSTR_444320 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40297450;END=40297461;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|25:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7027 chr21 40301587 GANGSTR_444321 AATGTAATGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40301587;END=40301596;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7028 chr21 40310173 GANGSTR_444322 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40310173;END=40310184;PERIOD=2;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7029 chr21 40311917 GANGSTR_444323 ATCAATCAATCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40311917;END=40311928;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7030 chr21 40313573 GANGSTR_444325 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40313573;END=40313584;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7031 chr21 40315080 GANGSTR_444326 AGGCAGGCAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40315080;END=40315091;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7032 chr21 40315678 GANGSTR_444327 AAATTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40315678;END=40315687;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7033 chr21 40316344 GANGSTR_444328 TTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40316344;END=40316358;PERIOD=5;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7034 chr21 40317431 GANGSTR_444329 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=40317431;END=40317442;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:-1|1;0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7035 chr21 40320389 GANGSTR_444330 ATGAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40320389;END=40320396;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7036 chr21 40321730 GANGSTR_444331 ATTGATTGATTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40321730;END=40321741;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7037 chr21 40323333 GANGSTR_444332 TGTTTTGTTTTG TGTTTTGTTTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40323333;END=40323342;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:61:0:0:0:30.50|30.50:0|0:16.25:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7038 chr21 40329530 GANGSTR_444333 TCATTCATTCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40329530;END=40329541;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|37:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7039 chr21 40330996 GANGSTR_444334 ACAGAACAGAACAGAACAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40330996;END=40331015;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7040 chr21 40338706 GANGSTR_444336 TGATGATGATGATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40338706;END=40338720;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7041 chr21 40344940 GANGSTR_444337 CAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40344940;END=40344955;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7042 chr21 40345164 GANGSTR_444338 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40345164;END=40345175;PERIOD=2;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7043 chr21 40352514 GANGSTR_444339 CCCCACCCCACCCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40352514;END=40352528;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7044 chr21 40361863 GANGSTR_444340 TGCATGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40361863;END=40361870;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7045 chr21 40367888 GANGSTR_444341 TGCTTGCTTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40367888;END=40367899;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7046 chr21 40370869 GANGSTR_444342 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40370869;END=40370880;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7047 chr21 40371363 GANGSTR_444343 GGAGAAGGGAGGGAGGG GAAGAAGGGAGGGAGGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40371368;END=40371379;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:39:0:0:0:17.50|21.50:0|0:49.44:-0.21:36:-0.13:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7048 chr21 40373004 GANGSTR_444344 ACCCACCCACCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40373004;END=40373015;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|40;15|1:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7049 chr21 40373118 GANGSTR_444345 CTGCTGCTGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40373118;END=40373129;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:22.08|27.92:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7050 chr21 40384785 GANGSTR_444346 CACACACACACACA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40384785;END=40384798;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:1:0:25.50|25.50:0|0:.:0:.:0:-2|1;0|36:-2|1;0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7051 chr21 40393433 GANGSTR_444347 TGGGTGGGTGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40393433;END=40393444;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7052 chr21 40396815 GANGSTR_444348 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=40396815;END=40396829;PERIOD=5;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:1:19.00|19.00:0|0:.:0:.:0:0|17:0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7053 chr21 40404305 GANGSTR_444349 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40404305;END=40404314;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:1:24.00|24.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7054 chr21 40406264 GANGSTR_444350 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40406264;END=40406275;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7055 chr21 40407224 GANGSTR_444351 TCATCATCATCATCA TCATCATCATCA . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40407224;END=40407238;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-3|-3:1:1:72:0:0:0:36.00|36.00:0|0:16.3:0:.:0:-3|47;0|1:-3|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7056 chr21 40409222 GANGSTR_444352 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40409222;END=40409236;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7057 chr21 40413922 GANGSTR_444353 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40413922;END=40413933;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7058 chr21 40418960 GANGSTR_444355 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40418960;END=40418999;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,2;DP=77;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|2:1:0.5:77:0:1:2:41.79|35.21:0|0:12.33:-0.53:33:-0.83:-4|1;-2|17;0|1;2|12:-2|15;0|1;2|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7059 chr21 40419462 GANGSTR_444356 GGGGAGGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40419462;END=40419471;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7060 chr21 40420726 GANGSTR_444357 CCAGCCCCAGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40420726;END=40420737;PERIOD=6;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7061 chr21 40421075 GANGSTR_444358 ATATATATATAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40421075;END=40421086;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:1:0:29.50|29.50:0|0:.:0:.:0:0|35;2|1:0|31;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7062 chr21 40421179 GANGSTR_444359 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40421179;END=40421190;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|36:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7063 chr21 40434302 GANGSTR_444360 CAGCCCAGCCCAGCCCTGC CAGCCCAGCCCAGCCCTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40434302;END=40434316;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:54:0:0:0:27.00|27.00:0|0:13.54:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7064 chr21 40435010 GANGSTR_444361 GGAAGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=40435010;END=40435017;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:1:1:26.50|26.50:0|0:.:0:.:0:-1|1;0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7065 chr21 40438522 GANGSTR_444363 TCTTGAGTCTTGAGTCTTGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40438522;END=40438542;PERIOD=7;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|34:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7066 chr21 40439285 GANGSTR_444364 TTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40439285;END=40439294;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7067 chr21 40442814 GANGSTR_444365 ACACACACACACAC ACACACACACACACAC . . INFRAME_PGEOM=0.98;INFRAME_UP=0.02;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.94;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.06;START=40442814;END=40442827;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:54:0:0:2:27.00|27.00:0|0:12.35:0:.:0:0|4;1|2;2|37:2|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7068 chr21 40450628 GANGSTR_444366 CAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40450628;END=40450643;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7069 chr21 40458768 GANGSTR_444367 GAAGAGAAGAGAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40458768;END=40458782;PERIOD=5;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7070 chr21 40463472 GANGSTR_444368 CTCCTCCTCCTCCTCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40463472;END=40463489;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|35:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7071 chr21 40464144 GANGSTR_444369 AAAGGAAAAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40464144;END=40464155;PERIOD=6;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|43:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7072 chr21 40475951 GANGSTR_444371 GAGGAGGAGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40475951;END=40475962;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7073 chr21 40479432 GANGSTR_444372 AGCAGCAGCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40479432;END=40479443;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7074 chr21 40485194 GANGSTR_444373 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40485194;END=40485205;PERIOD=3;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:0:0:40.00|40.00:0|0:.:0:.:0:0|60:0|57:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7075 chr21 40487081 GANGSTR_444374 CTCCCCTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40487081;END=40487090;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7076 chr21 40488133 GANGSTR_444375 CTCCTCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40488133;END=40488141;PERIOD=3;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7077 chr21 40488609 GANGSTR_444376 AGAGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40488609;END=40488622;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|44:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7078 chr21 40492978 GANGSTR_444377 GTGAGTGAGTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40492978;END=40492989;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:26.25|23.75:0|0:.:0:.:0:0|35:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7079 chr21 40496993 GANGSTR_444378 GTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.66;INFRAME_UP=0.07;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40496993;END=40497014;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6,10;DP=56;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:6|10:1:0.5:56:0:1:0:27.81|28.19:0|0:20.06:-0:37:-0.29:-36|2;-6|2;-3|2;0|2;6|15;10|14;14|1:6|17;10|15;14|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7080 chr21 40497474 GANGSTR_444379 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.03;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40497474;END=40497485;PERIOD=2;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:2:0:20.00|20.00:0|0:.:0:.:0:-2|2;0|28:-2|2;0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7081 chr21 40499407 GANGSTR_444380 TTTTTTTGTTTTGTTTTG TGTTTTTTTTTTGTTTTTT,TGTTTTTGTTTTTGTTTTTTTT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.02;INFRAME_DOWN=0.14;OUTFRAME_PGEOM=0.57;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.19;START=40499410;END=40499424;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=1,4;DP=55;DSNP=0;DSTUTTER=4;DFLANKINDEL=6;AN=2;REFAC=0;AC=1,1;HRUN=7;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:1|4:1:0.5:55:0:4:6:28.21|26.79:0|0:132.21:-0.05:48:-1.08:-4|4;-2|2;-1|3;0|4;1|14;2|1;4|11;5|1:1|16;4|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7082 chr21 40501977 GANGSTR_444381 TGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40501977;END=40501990;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:1:0:29.00|29.00:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7083 chr21 40502390 GANGSTR_444382 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40502390;END=40502401;PERIOD=2;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:1:35.50|35.50:0|0:.:0:.:0:0|53:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7084 chr21 40504808 GANGSTR_444383 GGAGGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40504808;END=40504817;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7085 chr21 40508408 GANGSTR_444384 ATATATATATATATATATATATAT ATATATATATATATATATAT,ATATATATATATATATATATAT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.12;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40508408;END=40508431;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4,-2;DP=48;DSNP=0;DSTUTTER=4;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|-2:1:0.5:48:0:4:0:27.30|20.70:0|0:4.19:-0.49:37:-0.5:-23|1;-6|1;-4|19;-2|13;0|2:-6|1;-4|17;-2|11;0|2:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7086 chr21 40509330 GANGSTR_444385 GCTCTCAGCTCTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40509330;END=40509343;PERIOD=7;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|34:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7087 chr21 40511128 GANGSTR_444386 TTATTTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40511128;END=40511147;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7088 chr21 40514390 GANGSTR_444387 TCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40514390;END=40514403;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:-2|1;0|37:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7089 chr21 40522033 GANGSTR_444389 GACTTTGGACTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40522033;END=40522046;PERIOD=7;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|42:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7090 chr21 40525363 GANGSTR_444390 ATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40525363;END=40525372;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7091 chr21 40532014 GANGSTR_444392 TGGGTGGGTGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40532014;END=40532025;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7092 chr21 40538406 GANGSTR_444393 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40538406;END=40538417;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|43:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7093 chr21 40541448 GANGSTR_444394 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40541448;END=40541459;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7094 chr21 40546346 GANGSTR_444395 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40546346;END=40546357;PERIOD=4;NSKIP=0;NFILT=0;DP=83;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:83:0:0:0:41.50|41.50:0|0:.:0:.:0:0|51:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7095 chr21 40547231 GANGSTR_444396 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40547231;END=40547250;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7096 chr21 40553521 GANGSTR_444397 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.79;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=40553521;END=40553530;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:3:26.50|26.50:0|0:.:0:.:0:-2|1;0|41;1|1:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7097 chr21 40555542 GANGSTR_444398 CCGCCCGCCCGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40555542;END=40555553;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:1:20.00|20.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7098 chr21 40559800 GANGSTR_444399 AACCTAACCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40559800;END=40559809;PERIOD=5;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7099 chr21 40563323 GANGSTR_444400 TGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40563323;END=40563337;PERIOD=5;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7100 chr21 40577994 GANGSTR_444402 TAAATAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40577994;END=40578009;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|27:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7101 chr21 40584035 GANGSTR_444404 TTTCCTTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40584035;END=40584044;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:30.50|31.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7102 chr21 40592042 GANGSTR_444405 GTGGGTGGGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40592042;END=40592053;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7103 chr21 40597896 GANGSTR_444406 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40597896;END=40597907;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7104 chr21 40599095 GANGSTR_444407 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40599095;END=40599106;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7105 chr21 40605461 GANGSTR_444408 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=40605461;END=40605472;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:-1|1;0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7106 chr21 40605946 GANGSTR_444409 TAAATAAATAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40605946;END=40605965;PERIOD=4;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:1:40.58|35.42:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7107 chr21 40607180 GANGSTR_444410 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40607180;END=40607199;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7108 chr21 40608538 GANGSTR_444411 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40608538;END=40608549;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7109 chr21 40609340 GANGSTR_444412 AATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40609340;END=40609348;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7110 chr21 40611985 GANGSTR_444413 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40611985;END=40612000;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:3:34.00|34.00:0|0:.:0:.:0:-15|1;0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7111 chr21 40616848 GANGSTR_444414 ATATATATATATATATATATATAT ATATATATATATATATATATATATATATATATATAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=40616848;END=40616871;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=12;DP=24;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|12:1:0.5:24:0:2:0:16.99|7.01:0|0:8.37:-1.89:14:0:-16|1;-1|1;0|10;12|1:-2|1;0|8;12|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7112 chr21 40620391 GANGSTR_444415 AACAAACAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40620391;END=40620402;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7113 chr21 40627347 GANGSTR_444416 AAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40627347;END=40627356;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.50|32.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7114 chr21 40630487 GANGSTR_444417 TGCTGCTGCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40630487;END=40630498;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7115 chr21 40631768 GANGSTR_444418 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40631768;END=40631779;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7116 chr21 40632305 GANGSTR_444419 GCCTGCCTGCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40632305;END=40632316;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7117 chr21 40635207 GANGSTR_444420 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40635207;END=40635218;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7118 chr21 40648066 GANGSTR_444421 ACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40648066;END=40648079;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7119 chr21 40649939 GANGSTR_444422 TTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40649939;END=40649948;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7120 chr21 40654034 GANGSTR_444423 ATAAAATAAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40654034;END=40654048;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7121 chr21 40660759 GANGSTR_444424 GAGGAGGAGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40660759;END=40660770;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|36:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7122 chr21 40671186 GANGSTR_444425 ATATATATATAT AATATATATAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.96;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.03;START=40671186;END=40671197;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=60;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:60:0:1:1:35.21|24.79:0|0:64.75:-0.69:50:0:-2|1;-1|16;0|25:-2|1;-1|17;0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7123 chr21 40685442 GANGSTR_444427 GAGCGAGCGAGCGAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40685442;END=40685457;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:2:24.50|24.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7124 chr21 40685516 GANGSTR_444428 CGCCGCCGCCGCCGCCGCCGCCGC CGCCGCCGCCGCCGCCGCCGCCGCCGC . . INFRAME_PGEOM=0.99;INFRAME_UP=0.08;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.07;START=40685516;END=40685539;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=3;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|3:1:0.5:46:0:0:1:20.18|25.82:0|0:3.2:-0.61:27:-0.16:-7|1;-1|1;0|10;3|14:0|10;3|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7125 chr21 40690506 GANGSTR_444429 TTCATTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40690506;END=40690521;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:-13|1;0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7126 chr21 40690861 GANGSTR_444430 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40690861;END=40690876;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7127 chr21 40697634 GANGSTR_444431 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40697634;END=40697645;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7128 chr21 40702554 GANGSTR_444432 TAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40702554;END=40702561;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7129 chr21 40702857 GANGSTR_444433 AATAATAATAATAAT AATAATAATAATAATAATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=40702857;END=40702871;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=4;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:41:0:0:1:19.50|21.50:0|0:76.42:-0.07:28:-0.82:-9|1;0|10;4|12:0|9;4|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7130 chr21 40704488 GANGSTR_444434 TTTGTTTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40704488;END=40704507;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7131 chr21 40706144 GANGSTR_444435 ATTTTATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40706144;END=40706163;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7132 chr21 40707314 GANGSTR_444436 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40707314;END=40707325;PERIOD=3;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.50|21.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7133 chr21 40717036 GANGSTR_444438 CACACACACACACACACACACACACACA CACACACACACACACACACACACA . . INFRAME_PGEOM=0.91;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=40717036;END=40717063;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=36;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:36:0:1:0:23.34|12.66:0|0:9.23:-1.36:25:0:-4|7;0|14:-4|7;0|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7134 chr21 40718984 GANGSTR_444439 ACACACACACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40718984;END=40719005;PERIOD=2;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|50:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7135 chr21 40721640 GANGSTR_444440 CTTCCTTCCTTCCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40721640;END=40721655;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:30.50|19.50:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7136 chr21 40723600 GANGSTR_444441 GTTTTGTTTTGTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40723600;END=40723614;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:1:34.00|34.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7137 chr21 40727513 GANGSTR_444442 ATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40727513;END=40727527;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7138 chr21 40733371 GANGSTR_444443 GTGGTGGTGGTGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40733371;END=40733385;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7139 chr21 40737898 GANGSTR_444444 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40737898;END=40737909;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7140 chr21 40739923 GANGSTR_444445 GTTTGTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40739923;END=40739938;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7141 chr21 40741107 GANGSTR_444446 TACAAAAATTACAAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=40741107;END=40741124;PERIOD=9;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|23:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7142 chr21 40743246 GANGSTR_444447 TTTCTTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40743246;END=40743261;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7143 chr21 40753681 GANGSTR_444448 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40753681;END=40753692;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7144 chr21 40755024 GANGSTR_444449 CCACCACCACCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=40755024;END=40755035;PERIOD=3;NSKIP=0;NFILT=0;DP=26;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:26:0:0:0:13.00|13.00:0|0:.:0:.:0:0|21:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7145 chr21 40756174 GANGSTR_444450 TTATTATTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=40756174;END=40756194;PERIOD=3;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|21:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7146 chr21 40758876 GANGSTR_444451 TCCCTCCCTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40758876;END=40758887;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7147 chr21 40766250 GANGSTR_444452 AAATAAAATAAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40766250;END=40766264;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:1:35.50|35.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7148 chr21 40773670 GANGSTR_444454 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40773670;END=40773681;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|46:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7149 chr21 40784527 GANGSTR_444455 CACACACACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40784527;END=40784544;PERIOD=2;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:1:21.50|21.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7150 chr21 40789133 GANGSTR_444456 ATTTTTGTATTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40789133;END=40789148;PERIOD=8;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|26:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7151 chr21 40790417 GANGSTR_444457 TTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.98;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=40790417;END=40790426;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:2:33.00|33.00:0|0:.:0:.:0:-1|1;0|45;1|1:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7152 chr21 40790983 GANGSTR_444458 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40790983;END=40790994;PERIOD=4;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|58:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7153 chr21 40796409 GANGSTR_444459 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40796409;END=40796420;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|48:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7154 chr21 40801942 GANGSTR_444461 AAACAAACAAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40801942;END=40801969;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7155 chr21 40806754 GANGSTR_444462 TTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40806754;END=40806765;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7156 chr21 40807590 GANGSTR_444463 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40807590;END=40807601;PERIOD=2;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7157 chr21 40809306 GANGSTR_444464 GAAATGAAATGAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40809306;END=40809320;PERIOD=5;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:0:38.50|38.50:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7158 chr21 40810112 GANGSTR_444465 CAGAAACAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40810112;END=40810123;PERIOD=6;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7159 chr21 40812327 GANGSTR_444466 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40812327;END=40812341;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7160 chr21 40813827 GANGSTR_444467 TTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40813827;END=40813834;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7161 chr21 40818279 GANGSTR_444468 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40818279;END=40818290;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|35:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7162 chr21 40819042 GANGSTR_444469 TGGTGGTGGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40819042;END=40819053;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7163 chr21 40822533 GANGSTR_444470 AGAGAGAGAGAGAG . . . INFRAME_PGEOM=0.73;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40822533;END=40822546;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:2:0:31.00|31.00:0|0:.:0:.:0:-4|1;-2|1;0|43:-4|1;-2|1;0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7164 chr21 40822711 GANGSTR_444471 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40822711;END=40822726;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7165 chr21 40824836 GANGSTR_444472 TGTCTGTCTGTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40824836;END=40824847;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7166 chr21 40830243 GANGSTR_444474 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40830243;END=40830258;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7167 chr21 40831452 GANGSTR_444475 TTTCTTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40831452;END=40831467;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|36:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7168 chr21 40833772 GANGSTR_444476 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40833772;END=40833783;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|36:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7169 chr21 40836911 GANGSTR_444477 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40836911;END=40836922;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7170 chr21 40841280 GANGSTR_444478 TTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40841280;END=40841287;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7171 chr21 40843526 GANGSTR_444479 TTGTTTGTTTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40843526;END=40843545;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7172 chr21 40846817 GANGSTR_444480 GTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=40846817;END=40846832;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:57:0:0:0:28.50|28.50:0|0:11.92:0:.:0:-4|2;2|38:2|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7173 chr21 40849230 GANGSTR_444481 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40849230;END=40849241;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7174 chr21 40850923 GANGSTR_444482 TTTGCTTTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40850923;END=40850932;PERIOD=5;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:1:37.50|37.50:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7175 chr21 40852030 GANGSTR_444483 TTAATTTAATTTAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40852030;END=40852044;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:2:35.00|35.00:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7176 chr21 40853238 GANGSTR_444484 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=40853238;END=40853249;PERIOD=4;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:0:0:40.00|40.00:0|0:.:0:.:0:0|65:0|62:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7177 chr21 40855220 GANGSTR_444485 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40855220;END=40855234;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7178 chr21 40860898 GANGSTR_444486 CAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40860898;END=40860913;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7179 chr21 40870210 GANGSTR_444487 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40870210;END=40870221;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:1:26.50|26.50:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7180 chr21 40870675 GANGSTR_444488 TCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40870675;END=40870688;PERIOD=2;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|36:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7181 chr21 40877933 GANGSTR_444489 GAAGAAGAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40877933;END=40877944;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7182 chr21 40879256 GANGSTR_444490 TATTTATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40879256;END=40879275;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7183 chr21 40881225 GANGSTR_444491 CAGGCCAGGCCAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=40881225;END=40881239;PERIOD=5;NSKIP=0;NFILT=0;DP=33;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:33:0:0:0:16.50|16.50:0|0:.:0:.:0:0|21:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7184 chr21 40884739 GANGSTR_444493 AAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40884739;END=40884758;PERIOD=5;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:0:39.50|39.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7185 chr21 40885705 GANGSTR_444494 AAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40885705;END=40885714;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7186 chr21 40885904 GANGSTR_444495 AAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40885904;END=40885911;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|56:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7187 chr21 40890297 GANGSTR_444497 AAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40890297;END=40890316;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7188 chr21 40891958 GANGSTR_444498 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40891958;END=40891969;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7189 chr21 40908468 GANGSTR_444500 TAAACTATAAACTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40908468;END=40908481;PERIOD=7;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|36:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7190 chr21 40909076 GANGSTR_444501 GAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGA . . INFRAME_PGEOM=0.97;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40909076;END=40909095;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=62;DSNP=0;DSTUTTER=3;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:62:0:3:2:36.59|25.41:0|0:34.5:-0.76:44:-0.12:-4|2;-2|1;0|26;2|2;4|12:-2|1;0|21;2|1;4|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7191 chr21 40916309 GANGSTR_444502 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40916309;END=40916318;PERIOD=5;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:23.50|19.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7192 chr21 40920985 GANGSTR_444503 CTCCCTCCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40920985;END=40920996;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:23.56|31.44:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7193 chr21 40926084 GANGSTR_444504 TCCTCCTCCTCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40926084;END=40926098;PERIOD=3;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:23.66|16.34:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7194 chr21 40927432 GANGSTR_444505 TTCTTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40927432;END=40927441;PERIOD=5;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7195 chr21 40943251 GANGSTR_444506 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.93;INFRAME_UP=0.06;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=40943251;END=40943288;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,2;DP=52;DSNP=0;DSTUTTER=2;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 2|1:2|-2:1:0.5:52:0:2:2:25.89|26.11:0|0:9.68:0:24:0:-10|1;-4|1;-2|12;0|1;2|8:-4|1;-2|9;0|1;2|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7196 chr21 40945562 GANGSTR_444507 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.07;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=40945562;END=40945601;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=60;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:60:0:1:1:29.07|30.93:0|0:4.36:-0.07:26:-0.34:-14|1;-2|1;0|14;2|9:-2|1;0|8;2|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7197 chr21 40948246 GANGSTR_444508 AAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40948246;END=40948265;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:1:34.50|34.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7198 chr21 40949533 GANGSTR_444509 TAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40949533;END=40949541;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7199 chr21 40952614 GANGSTR_444510 CATCCATCCATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40952614;END=40952625;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7200 chr21 40958762 GANGSTR_444512 TTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40958762;END=40958769;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:4:23.00|23.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7201 chr21 40966903 GANGSTR_444513 TTGTTTGTTTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40966903;END=40966922;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7202 chr21 40970034 GANGSTR_444514 TGCTGCTGCTGCTGC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40970034;END=40970048;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:1:1:32.00|32.00:0|0:.:0:.:0:-3|1;0|46:-3|1;0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7203 chr21 40976215 GANGSTR_444515 TTAATTAATTAATTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40976215;END=40976238;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7204 chr21 40979914 GANGSTR_444516 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40979914;END=40979925;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7205 chr21 40982160 GANGSTR_444517 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40982160;END=40982171;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7206 chr21 40982586 GANGSTR_444518 GGATGGATGGATGGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40982586;END=40982601;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7207 chr21 40983501 GANGSTR_444519 AGGCAGGCAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40983501;END=40983512;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|34:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7208 chr21 40984436 GANGSTR_444520 TGGTGGTGGTC TGGTGGTGGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40984436;END=40984444;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:47:0:0:0:20.51|26.49:0|0:63.49:-0.35:44:-1:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7209 chr21 40985010 GANGSTR_444521 GGGGCGCGGGGCGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40985010;END=40985023;PERIOD=7;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|27:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7210 chr21 40985354 GANGSTR_444522 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=40985354;END=40985365;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|47:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7211 chr21 40986275 GANGSTR_444523 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=40986275;END=40986286;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|35:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7212 chr21 40994974 GANGSTR_444524 TTTTCTTTTCTTTTCTTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=40994974;END=40994998;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7213 chr21 41001520 GANGSTR_444525 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41001520;END=41001531;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7214 chr21 41013285 GANGSTR_444526 AAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=41013285;END=41013292;PERIOD=4;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:1:38.50|38.50:0|0:.:0:.:0:0|62:0|57:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7215 chr21 41014481 GANGSTR_444527 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41014481;END=41014492;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7216 chr21 41017223 GANGSTR_444528 TTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41017223;END=41017232;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7217 chr21 41019347 GANGSTR_444529 TTAATTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41019347;END=41019362;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7218 chr21 41022366 GANGSTR_444530 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41022366;END=41022377;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7219 chr21 41025217 GANGSTR_444531 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41025217;END=41025228;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7220 chr21 41030526 GANGSTR_444532 AGAGAAAGAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41030526;END=41030537;PERIOD=6;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7221 chr21 41036045 GANGSTR_444534 AGAGAGAGAGAG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41036045;END=41036056;PERIOD=2;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:2:0:32.00|32.00:0|0:.:0:.:0:-2|2;0|51:-2|2;0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7222 chr21 41038233 GANGSTR_444535 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41038233;END=41038244;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7223 chr21 41038617 GANGSTR_444536 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41038617;END=41038631;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7224 chr21 41039438 GANGSTR_444537 TGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41039438;END=41039451;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|41:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7225 chr21 41042139 GANGSTR_444538 TGTGTGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.03;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41042139;END=41042162;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:2:1:29.50|29.50:0|0:.:0:.:0:-2|2;0|33:-2|2;0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7226 chr21 41043215 GANGSTR_444539 TTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41043215;END=41043226;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:22.50|26.50:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7227 chr21 41045199 GANGSTR_444540 AGGGAGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41045199;END=41045210;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7228 chr21 41049413 GANGSTR_444541 TTTGTTTGTTTGTTTG TTTGTTTGTTTG . . INFRAME_PGEOM=0.97;INFRAME_UP=0.07;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41049413;END=41049428;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:55:0:0:0:30.67|24.33:0|0:7.99:-0.64:34:-0.32:-4|13;0|20:-4|13;0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7229 chr21 41055080 GANGSTR_444543 ATTTTTATTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41055080;END=41055091;PERIOD=6;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|41:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7230 chr21 41055712 GANGSTR_444544 CAAAAACAAAAACAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41055712;END=41055729;PERIOD=6;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|29:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7231 chr21 41063574 GANGSTR_444546 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41063574;END=41063585;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7232 chr21 41071224 GANGSTR_444547 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41071224;END=41071235;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7233 chr21 41073398 GANGSTR_444548 ATGATGATGATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41073398;END=41073409;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:26.48|30.52:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7234 chr21 41075652 GANGSTR_444549 CTCTTGCTCTCTTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41075652;END=41075667;PERIOD=8;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|39:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7235 chr21 41082776 GANGSTR_444550 GGGAGGGAGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41082776;END=41082787;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7236 chr21 41090261 GANGSTR_444552 CTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41090261;END=41090272;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7237 chr21 41091087 GANGSTR_444553 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41091087;END=41091098;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7238 chr21 41101287 GANGSTR_444555 GGTGAGGTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41101287;END=41101296;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7239 chr21 41101634 GANGSTR_444556 AATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41101634;END=41101641;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7240 chr21 41104955 GANGSTR_444557 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41104955;END=41104966;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|33:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7241 chr21 41108360 GANGSTR_444559 AAACAAAACAAAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41108360;END=41108384;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7242 chr21 41108732 GANGSTR_444560 GCTGAGGCTGAGGCTGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41108732;END=41108749;PERIOD=6;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|27:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7243 chr21 41112214 GANGSTR_444561 CCTTTCCTTTCCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41112214;END=41112228;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7244 chr21 41118718 GANGSTR_444562 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41118718;END=41118729;PERIOD=3;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|51:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7245 chr21 41128017 GANGSTR_444563 CAAACAAACAAACAAACAAACAAACAAACAAA CAAACAAACAAACAAACAAACAAA,CAAACAAACAAACAAACAAACAAACAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41128017;END=41128048;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-8,-4;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-8|-4:1:0.5:60:0:0:0:32.31|27.69:0|0:9.54:-0.49:37:0:-8|21;-4|11:-8|20;-4|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7246 chr21 41128799 GANGSTR_444564 GGAAGGAAGGAA GGAAGGAAAGAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41128799;END=41128810;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:58:0:0:0:24.51|33.49:0|0:83.28:-0.57:53:-0.1:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7247 chr21 41133591 GANGSTR_444565 CTTTCCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41133591;END=41133600;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7248 chr21 41145400 GANGSTR_444567 CTTTTCTTTT CTTTTCTTTTTTTTTCCTTTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.02;START=41145400;END=41145409;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=12;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|12:1:0.5:62:0:0:2:20.47|41.53:0|0:101.79:-2.42:49:-0.28:-4|7;-3|1;0|25;12|14;13|1:0|16;12|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7249 chr21 41151155 GANGSTR_444568 GCTGCTGCTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41151155;END=41151166;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7250 chr21 41162590 GANGSTR_444569 AACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41162590;END=41162604;PERIOD=3;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|53:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7251 chr21 41166324 GANGSTR_444570 TGGTTGGTTGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41166324;END=41166335;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7252 chr21 41166459 GANGSTR_444571 ATGAATGAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41166459;END=41166470;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:34.50|23.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7253 chr21 41182715 GANGSTR_444572 TTTGTTTGTTTGTTTGTTTGTTTG TTTGTTTGTTTGTTTGTTGGTTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.09;START=41182715;END=41182738;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=6;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:64:0:0:6:32.00|32.00:0|0:17.46:0:.:0:-1|4;0|35;1|2:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7254 chr21 41192737 GANGSTR_444573 TTATTTTATTTTATT TTATTTTATTTTAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.94;OUTFRAME_UP=0.08;OUTFRAME_DOWN=0.03;START=41192737;END=41192751;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-1|-1:1:1:52:0:0:0:26.00|26.00:0|0:12.32:0:.:0:-1|29;0|1:-1|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7255 chr21 41195465 GANGSTR_444574 CTGCTGCTGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41195465;END=41195476;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7256 chr21 41195886 GANGSTR_444575 GTGATATTTATTTATTTATTTATTTATTTATTTATT GAGTGATATTTATTTATTTATTTATTTATTTATTTATT,GTGATATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=41195890;END=41195921;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=2,16;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:2|16:1:0.5:54:0:0:0:29.50|24.50:0|0:62.77:-0.27:41:-0.28:-2|2;0|13;16|8:2|10;16|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7257 chr21 41198345 GANGSTR_444576 GTGTGTGTGTGT GTGTGTGTGTGTAT . . INFRAME_PGEOM=0.96;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41198345;END=41198356;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:52:0:0:0:30.74|21.26:0|0:37.33:-0.81:40:-0.82:0|24;2|14:0|21;2|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7258 chr21 41198417 GANGSTR_444577 TATATATATATATAAG TATATATATATATAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41198417;END=41198430;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:50:0:0:1:31.01|18.99:0|0:54.07:-1.02:44:0:0|40:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7259 chr21 41201190 GANGSTR_444578 TCTTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41201190;END=41201199;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7260 chr21 41208003 GANGSTR_444579 AGAAGAAGAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41208003;END=41208014;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7261 chr21 41208460 GANGSTR_444580 CATTCATTCATTCATT CATTCATTCATCCATT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41208460;END=41208475;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:67:0:0:0:34.44|32.56:0|0:103.58:-0.05:60:-0.22:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7262 chr21 41209330 GANGSTR_444581 TCTCTCTCTCTC TCTCTCTCTCTCTCTC . . INFRAME_PGEOM=0.91;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41209330;END=41209341;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:59:0:0:0:36.00|23.00:0|0:47.57:-0.93:59:-0.1:-17|2;0|24;4|15:0|20;4|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7263 chr21 41215305 GANGSTR_444582 GGGTCTGGGTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41215305;END=41215316;PERIOD=6;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:23.00|29.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7264 chr21 41215618 GANGSTR_444583 GGAGGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41215618;END=41215626;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7265 chr21 41217101 GANGSTR_444584 GGAGGAGGAGGAGGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=41217101;END=41217118;PERIOD=3;NSKIP=0;NFILT=0;DP=21;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:21:0:0:0:10.50|10.50:0|0:.:0:.:0:0|17:0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7266 chr21 41221263 GANGSTR_444585 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41221263;END=41221274;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:24.50|20.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7267 chr21 41222373 GANGSTR_444586 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41222373;END=41222384;PERIOD=2;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7268 chr21 41225092 GANGSTR_444587 AGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41225092;END=41225103;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7269 chr21 41229492 GANGSTR_444588 CACTCACTCACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41229492;END=41229503;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7270 chr21 41232328 GANGSTR_444589 CTGCTCCTGCTCCTGCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41232328;END=41232345;PERIOD=6;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|33:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7271 chr21 41234720 GANGSTR_444590 AGAGAGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41234720;END=41234735;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7272 chr21 41235184 GANGSTR_444591 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41235184;END=41235195;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7273 chr21 41237841 GANGSTR_444592 CCTCCTCCTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41237841;END=41237852;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|30:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7274 chr21 41237929 GANGSTR_444593 AGGAGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41237929;END=41237940;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7275 chr21 41240835 GANGSTR_444594 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41240835;END=41240846;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|30:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7276 chr21 41249641 GANGSTR_444595 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41249641;END=41249655;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7277 chr21 41249929 GANGSTR_444596 GAGAGAGAGAGAGAGATTATG GAGAGAGAGAGAGAGATTATGTCT,GAGAGAGAGAGAGAGAGATTATGTCT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.04;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41249929;END=41249944;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=3,5;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:3|5:1:0.5:73:0:0:0:34.23|38.77:0|0:24.55:-0.23:55:-0.76:-1|1;0|23;2|29:3|21;5|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7278 chr21 41255578 GANGSTR_444597 TATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41255578;END=41255587;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7279 chr21 41262285 GANGSTR_444598 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41262285;END=41262296;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7280 chr21 41272620 GANGSTR_444599 ATGGGATGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41272620;END=41272629;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7281 chr21 41273156 GANGSTR_444600 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41273156;END=41273167;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7282 chr21 41276579 GANGSTR_444602 CTCTGCTCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41276579;END=41276588;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|58:0|58:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7283 chr21 41284622 GANGSTR_444604 TTAATTTAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41284622;END=41284631;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7284 chr21 41299957 GANGSTR_444605 TTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41299957;END=41299966;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7285 chr21 41304559 GANGSTR_444606 AGAACAGAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41304559;END=41304568;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7286 chr21 41314777 GANGSTR_444607 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41314777;END=41314788;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7287 chr21 41324126 GANGSTR_444609 TTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41324126;END=41324145;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:27.50|30.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7288 chr21 41327286 GANGSTR_444610 TTATTTTATTTTATTTTATTTTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=41327286;END=41327315;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|15:0|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7289 chr21 41331584 GANGSTR_444611 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41331584;END=41331595;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|35:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7290 chr21 41341233 GANGSTR_444612 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41341233;END=41341244;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7291 chr21 41343451 GANGSTR_444613 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41343451;END=41343462;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7292 chr21 41343533 GANGSTR_444614 TTCTTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41343533;END=41343542;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7293 chr21 41345722 GANGSTR_444615 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGA,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGA . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=41345722;END=41345765;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-14,-4;DP=56;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-14|-4:1:0.5:56:0:1:0:28.97|27.03:0|0:114.69:-0.06:34:-0.29:-14|18;-6|1;-4|12:-14|17;-6|1;-4|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7294 chr21 41346059 GANGSTR_444616 GGTGGTGGTGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41346059;END=41346070;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7295 chr21 41350443 GANGSTR_444617 GAGAGAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41350443;END=41350458;PERIOD=2;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:1:0:23.50|23.50:0|0:.:0:.:0:-2|1;0|34:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7296 chr21 41356670 GANGSTR_444618 GTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=1;INFRAME_UP=0.07;INFRAME_DOWN=0.14;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41356670;END=41356695;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2,10;DP=56;DSNP=0;DSTUTTER=4;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:2|10:1:0.5:56:0:4:0:26.48|29.52:0|0:18.02:-0.18:46:-0.12:-15|1;-8|3;-4|1;-2|2;2|12;4|1;8|3;10|11:2|12;4|1;8|3;10|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7297 chr21 41357457 GANGSTR_444619 ATACACACACACACACACACACACACACACACACAC ACACACACACACACACACACAC,ATACACACACACACACACACACACACACACACCC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=41357459;END=41357492;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-14,-2;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-14|-2:1:0.5:57:0:0:0:25.93|31.07:0|0:115.63:-0.22:57:-0.97:-21|3;-14|17;-2|12:-14|17;-2|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7298 chr21 41358165 GANGSTR_444621 CACACACACACACACACACACACACACACACACACA CACACACACACACACACACACACACACACACA . . INFRAME_PGEOM=0.92;INFRAME_UP=0.1;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=41358165;END=41358200;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=51;DSNP=0;DSTUTTER=4;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:51:0:4:1:26.04|24.96:0|0:16.15:-0:37:-0.29:-32|1;-6|1;-4|8;-2|2;0|8:-4|9;-2|2;0|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7299 chr21 41360175 GANGSTR_444622 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41360175;END=41360186;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7300 chr21 41360700 GANGSTR_444623 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41360700;END=41360711;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7301 chr21 41371363 GANGSTR_444624 ATTGATTGATTGATTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41371363;END=41371378;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7302 chr21 41379916 GANGSTR_444625 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41379916;END=41379927;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7303 chr21 41385532 GANGSTR_444626 TACTTACTTACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41385532;END=41385543;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7304 chr21 41386311 GANGSTR_444627 AAACAAAACAAAACAAAACAAAACAAAACA . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41386311;END=41386340;PERIOD=5;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:1:0:36.50|36.50:0|0:.:0:.:0:-5|1;0|33:-5|1;0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7305 chr21 41390262 GANGSTR_444628 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41390262;END=41390273;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7306 chr21 41392272 GANGSTR_444629 CTTCCTTCCTTCCTTCCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41392272;END=41392291;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:32.00|23.00:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7307 chr21 41400263 GANGSTR_444630 AGGCAGGCAGGCAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41400263;END=41400278;PERIOD=4;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:4:19.50|19.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7308 chr21 41401134 GANGSTR_444631 CTTCTTCTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41401134;END=41401145;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:1:34.00|34.00:0|0:.:0:.:0:0|51:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7309 chr21 41405613 GANGSTR_444632 GCCTGCCTGCCTGCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41405613;END=41405628;PERIOD=4;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:0:38.50|38.50:0|0:.:0:.:0:0|58:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7310 chr21 41411098 GANGSTR_444633 AAAGAAAAGAAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41411098;END=41411112;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7311 chr21 41414853 GANGSTR_444634 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41414853;END=41414864;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7312 chr21 41427933 GANGSTR_444635 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41427933;END=41427944;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7313 chr21 41438774 GANGSTR_444636 TCCCTTCCCTTCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41438774;END=41438788;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7314 chr21 41440068 GANGSTR_444637 GGAAGGAAGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41440068;END=41440079;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:29.00|25.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7315 chr21 41443326 GANGSTR_444638 TTTCTTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41443326;END=41443341;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7316 chr21 41454387 GANGSTR_444639 AACAAAACAAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41454387;END=41454401;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:29.00|31.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7317 chr21 41455361 GANGSTR_444640 AACAAAACAAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41455361;END=41455375;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7318 chr21 41455583 GANGSTR_444641 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41455583;END=41455594;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7319 chr21 41456807 GANGSTR_444643 TTCCTTTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41456807;END=41456816;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|55:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7320 chr21 41462461 GANGSTR_444644 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=41462461;END=41462472;PERIOD=3;NSKIP=0;NFILT=0;DP=31;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:31:0:0:1:15.50|15.50:0|0:.:0:.:0:0|23:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7321 chr21 41464587 GANGSTR_444645 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41464587;END=41464598;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7322 chr21 41467671 GANGSTR_444646 AATCAATCAATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41467671;END=41467682;PERIOD=4;NSKIP=0;NFILT=0;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:78:0:0:0:39.00|39.00:0|0:.:0:.:0:0|54:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7323 chr21 41471923 GANGSTR_444648 GGCTGGGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41471923;END=41471932;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7324 chr21 41481055 GANGSTR_444650 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41481055;END=41481066;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7325 chr21 41481885 GANGSTR_444651 GCCTGCCTGCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41481885;END=41481896;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:2:33.50|33.50:0|0:.:0:.:0:0|49:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7326 chr21 41488067 GANGSTR_444652 ACAACAACAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41488067;END=41488078;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7327 chr21 41490514 GANGSTR_444653 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41490514;END=41490525;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7328 chr21 41493157 GANGSTR_444654 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41493157;END=41493171;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:-38|1;0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7329 chr21 41494349 GANGSTR_444655 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41494349;END=41494360;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|49;4|1:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7330 chr21 41499732 GANGSTR_444656 GGACAGGACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41499732;END=41499741;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7331 chr21 41501154 GANGSTR_444657 GCCGTGCCGT GCCTTGCCGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41501154;END=41501163;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:55:0:0:2:27.50|27.50:0|0:8.89:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7332 chr21 41509522 GANGSTR_444658 ACACACACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACATACACACACACACACACACACACACACACAC,ACACACACACACACACATACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.15;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41509522;END=41509571;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4,-2;DP=57;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|-2:1:0.5:57:0:3:0:30.90|26.10:0|0:15.83:-0.47:39:-0.72:-6|1;-4|18;-2|11:-6|1;-4|16;-2|8:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7333 chr21 41510745 GANGSTR_444660 GTGTGGTGTGGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41510745;END=41510759;PERIOD=5;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:3:22.50|22.50:0|0:.:0:.:0:-2|1;0|28;4|1:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7334 chr21 41518631 GANGSTR_444661 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41518631;END=41518642;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7335 chr21 41518869 GANGSTR_444662 TAATTAATTAAT TAATTAATCAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41518869;END=41518880;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:60:0:0:0:24.00|36.00:0|0:50.71:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7336 chr21 41520542 GANGSTR_444663 ACCACCACCACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41520542;END=41520553;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|48:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7337 chr21 41527464 GANGSTR_444664 AGGGAGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41527464;END=41527475;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7338 chr21 41531060 GANGSTR_444666 ATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41531060;END=41531068;PERIOD=3;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7339 chr21 41531508 GANGSTR_444667 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41531508;END=41531519;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7340 chr21 41533571 GANGSTR_444668 TTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41533571;END=41533580;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7341 chr21 41534998 GANGSTR_444669 ACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=41534998;END=41535033;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=8;DP=58;DSNP=0;DSTUTTER=4;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|8:1:0.5:58:0:4:0:26.44|31.56:0|0:101.56:-0.34:29:0:-6|2;-2|2;0|17;4|1;8|6:-2|1;0|11;6|1;8|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7342 chr21 41535940 GANGSTR_444670 CATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41535940;END=41535951;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:-35|1;0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7343 chr21 41536730 GANGSTR_444671 AAATAAATAAAT AAATAAATAAATAAAT . . INFRAME_PGEOM=0.98;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41536730;END=41536741;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:75:0:0:0:40.06|34.94:0|0:17.04:-0.31:52:-0.11:-1|2;0|24;4|21:0|22;4|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7344 chr21 41537101 GANGSTR_444672 TTCTTTCTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41537101;END=41537112;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7345 chr21 41540975 GANGSTR_444673 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41540975;END=41540986;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7346 chr21 41544806 GANGSTR_444674 TGGGTGGGTGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41544806;END=41544817;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7347 chr21 41548604 GANGSTR_444675 CCTTCCCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41548604;END=41548613;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7348 chr21 41562420 GANGSTR_444676 AATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41562420;END=41562428;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7349 chr21 41567011 GANGSTR_444677 ATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41567011;END=41567018;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:31.00|35.00:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7350 chr21 41568572 GANGSTR_444678 CCTTCCTTCCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41568572;END=41568583;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7351 chr21 41569034 GANGSTR_444679 TTTCTTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41569034;END=41569049;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:1:2:32.00|32.00:0|0:.:0:.:0:-16|1;0|49:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7352 chr21 41569569 GANGSTR_444680 TCCTTCCTTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41569569;END=41569580;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:19.50|23.50:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7353 chr21 41573370 GANGSTR_444681 TTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41573370;END=41573385;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:31.50|36.50:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7354 chr21 41578837 GANGSTR_444682 CAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41578837;END=41578851;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7355 chr21 41582874 GANGSTR_444683 CCACCACCACCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41582874;END=41582885;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:1:23.00|23.00:0|0:.:0:.:0:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7356 chr21 41583210 GANGSTR_444684 TTGTTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41583210;END=41583227;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7357 chr21 41583847 GANGSTR_444685 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41583847;END=41583858;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7358 chr21 41593751 GANGSTR_444686 TCATTTCATTTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41593751;END=41593765;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7359 chr21 41595861 GANGSTR_444687 CCCCACCCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41595861;END=41595870;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.00|31.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7360 chr21 41604795 GANGSTR_444688 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41604795;END=41604806;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.99|28.01:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7361 chr21 41605425 GANGSTR_444689 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41605425;END=41605436;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|46:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7362 chr21 41609144 GANGSTR_444690 TTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41609144;END=41609158;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7363 chr21 41612349 GANGSTR_444691 AGATAGATAGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41612349;END=41612360;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:0|38:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7364 chr21 41614135 GANGSTR_444692 TGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41614135;END=41614142;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7365 chr21 41615480 GANGSTR_444693 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41615480;END=41615491;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7366 chr21 41616607 GANGSTR_444694 GGTAGGTAGGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41616607;END=41616618;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7367 chr21 41616923 GANGSTR_444695 GAGGGAGGGAGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41616923;END=41616938;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:1:23.50|23.50:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7368 chr21 41629397 GANGSTR_444696 ACACACACACACACACACACACACACACAATG ACACACACACACACACACACACACACACACACACACACACACAATC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=41629397;END=41629424;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=14;DP=50;DSNP=0;DSTUTTER=4;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|14:1:0.5:50:0:4:0:34.66|15.34:0|0:59.09:-2.65:40:-0.55:-31|1;-4|6;0|16;1|2;14|2:0|16;12|1;14|3:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7369 chr21 41638964 GANGSTR_444698 GGGAGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41638964;END=41638971;PERIOD=4;NSKIP=0;NFILT=0;DP=34;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:34:0:0:0:17.00|17.00:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7370 chr21 41640532 GANGSTR_444699 AGGAGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41640532;END=41640543;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7371 chr21 41648334 GANGSTR_444700 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41648334;END=41648345;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7372 chr21 41648836 GANGSTR_444701 GATATGATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41648836;END=41648845;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7373 chr21 41653393 GANGSTR_444702 ATATATATATAT . . . INFRAME_PGEOM=0.98;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41653393;END=41653404;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:2:0:27.50|27.50:0|0:.:0:.:0:-2|1;0|37;2|1:-2|1;0|34;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7374 chr21 41660365 GANGSTR_444703 AACAAACAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41660365;END=41660376;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7375 chr21 41664036 GANGSTR_444704 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41664036;END=41664047;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7376 chr21 41675611 GANGSTR_444705 GAATGAATGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41675611;END=41675622;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7377 chr21 41676856 GANGSTR_444706 ATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41676856;END=41676864;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7378 chr21 41680011 GANGSTR_444707 AATAAAATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41680011;END=41680025;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7379 chr21 41689450 GANGSTR_444708 TTCTTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41689450;END=41689459;PERIOD=5;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:2:37.00|37.00:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7380 chr21 41706643 GANGSTR_444711 ACCACAACCACA ACCACA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.04;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41706643;END=41706654;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-6:1:0.5:50:0:0:0:23.73|26.27:0|0:21.15:-0.19:44:-0.42:-6|21;0|12:-6|23;0|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7381 chr21 41708813 GANGSTR_444712 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41708813;END=41708824;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7382 chr21 41715571 GANGSTR_444713 ACACACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41715571;END=41715586;PERIOD=2;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:1:0:22.50|22.50:0|0:.:0:.:0:-2|1;0|27:-2|1;0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7383 chr21 41721641 GANGSTR_444714 CAAAACAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41721641;END=41721660;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7384 chr21 41721973 GANGSTR_444715 TATTATTATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41721973;END=41721990;PERIOD=3;NSKIP=0;NFILT=0;DP=84;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:84:0:0:0:42.00|42.00:0|0:.:0:.:0:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7385 chr21 41728316 GANGSTR_444716 ATATATATATATATATATAT ATATATATATATATATATATATATAT . . INFRAME_PGEOM=0.96;INFRAME_UP=0.1;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=41728316;END=41728335;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6;DP=40;DSNP=0;DSTUTTER=4;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|6:1:0.5:40:0:4:0:25.55|14.45:0|0:35.63:-1.05:35:-0.31:-30|1;-2|2;0|14;2|1;6|7;8|1:-2|1;0|10;2|1;6|7;8|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7386 chr21 41733057 GANGSTR_444717 TATATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41733057;END=41733072;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:1:24.50|24.50:0|0:.:0:.:0:0|32:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7387 chr21 41733547 GANGSTR_444718 AAACAAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41733547;END=41733570;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:1:0:28.00|28.00:0|0:.:0:.:0:-4|1;0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7388 chr21 41734209 GANGSTR_444719 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41734209;END=41734220;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:-1|1;0|38:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7389 chr21 41741313 GANGSTR_444720 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=41741313;END=41741348;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,8;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|8:1:0.5:43:0:0:2:24.72|18.28:0|0:15.1:-0.58:20:-0.46:-7|1;-2|13;0|1;6|1;8|4:-2|12;8|4:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7390 chr21 41752321 GANGSTR_444721 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41752321;END=41752332;PERIOD=4;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:0:39.50|39.50:0|0:.:0:.:0:0|54:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7391 chr21 41755268 GANGSTR_444722 AAAAGAAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41755268;END=41755287;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7392 chr21 41756543 GANGSTR_444723 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41756543;END=41756554;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7393 chr21 41756763 GANGSTR_444724 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41756763;END=41756774;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7394 chr21 41759923 GANGSTR_444725 AAGAAAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41759923;END=41759934;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7395 chr21 41767159 GANGSTR_444726 TTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41767159;END=41767173;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7396 chr21 41769874 GANGSTR_444727 ACCACCACCACC ACCACCACCACT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41769874;END=41769885;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:51:0:0:0:26.50|24.50:0|0:73.7:-0.05:46:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7397 chr21 41771197 GANGSTR_444728 ACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAA ACAAAACAAAACAAAACAAAACAAAACAAAACAAA . . INFRAME_PGEOM=0.97;INFRAME_UP=0.11;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=41771197;END=41771236;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-5;DP=67;DSNP=0;DSTUTTER=7;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-5|-5:0.63:0.63:67:0:7:0:33.50|33.50:0|0:0.22:0:.:0:-5|16;0|6:-5|16;0|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7398 chr21 41771638 GANGSTR_444729 ATTCATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41771638;END=41771653;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7399 chr21 41772434 GANGSTR_444730 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41772434;END=41772445;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:1:37.00|37.00:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7400 chr21 41775557 GANGSTR_444731 CACACACACACACACACACACACACACACACACA CACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACA . . INFRAME_PGEOM=0.9;INFRAME_UP=0.1;INFRAME_DOWN=0.18;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41775557;END=41775590;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,2;DP=58;DSNP=0;DSTUTTER=6;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|2:1:0.5:58:0:6:1:30.08|27.92:0|0:6.32:-0:31:-0.32:-4|3;-2|11;0|4;2|11:-4|1;-2|9;0|3;2|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7401 chr21 41777923 GANGSTR_444732 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41777923;END=41777934;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7402 chr21 41778515 GANGSTR_444733 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41778515;END=41778530;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7403 chr21 41780180 GANGSTR_444734 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41780180;END=41780191;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7404 chr21 41783101 GANGSTR_444735 ATACACACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=1;INFRAME_UP=0.09;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=41783103;END=41783150;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-10,0;DP=53;DSNP=0;DSTUTTER=6;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-10|0:1:0.5:53:0:6:1:25.48|27.52:0|0:45.14:-0.07:26:-0.62:-12|1;-10|7;-8|2;-4|1;-2|1;0|12:-12|1;-10|8;-8|1;-2|4;0|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7405 chr21 41789163 GANGSTR_444736 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41789163;END=41789174;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|44:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7406 chr21 41791702 GANGSTR_444737 TCATCATCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41791702;END=41791710;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7407 chr21 41793256 GANGSTR_444738 CCTGTCCTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41793256;END=41793265;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7408 chr21 41795277 GANGSTR_444739 GAGAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41795277;END=41795290;PERIOD=2;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7409 chr21 41800761 GANGSTR_444741 ACACACACACACACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41800761;END=41800784;PERIOD=2;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:1:2:36.50|36.50:0|0:.:0:.:0:-2|2;0|50:-2|1;0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7410 chr21 41810331 GANGSTR_444742 ATGAATGAATGAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41810331;END=41810346;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7411 chr21 41815729 GANGSTR_444743 TGAAATGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41815729;END=41815738;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7412 chr21 41820930 GANGSTR_444744 ATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41820930;END=41820944;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:29.50|23.50:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7413 chr21 41822675 GANGSTR_444745 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41822675;END=41822686;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7414 chr21 41824165 GANGSTR_444746 ACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=41824165;END=41824194;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6,18;DP=46;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:6|18:1:0.5:46:0:1:0:25.00|21.00:0|0:52.82:-0.27:24:-0.17:-6|5;6|12;16|1;18|5:6|13;16|1;18|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7415 chr21 41828011 GANGSTR_444748 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41828011;END=41828022;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7416 chr21 41829457 GANGSTR_444749 AAACAAACAAACAAACAAACAAAC AAACAAACAAACAAACAAACAAACAAAC . . INFRAME_PGEOM=0.97;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.02;START=41829457;END=41829480;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:75:0:0:0:33.04|41.96:0|0:14.13:-0.67:52:-0.41:-1|3;0|21;1|1;4|24:0|21;4|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7417 chr21 41833257 GANGSTR_444750 ATAATAATA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41833257;END=41833265;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:1:0:26.50|26.50:0|0:.:0:.:0:-3|1;0|40:-3|1;0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7418 chr21 41833959 GANGSTR_444751 AGCAGCAGCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41833959;END=41833970;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|54:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7419 chr21 41840327 GANGSTR_444752 GAGAAGAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41840327;END=41840336;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7420 chr21 41846360 GANGSTR_444753 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41846360;END=41846371;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7421 chr21 41849234 GANGSTR_444754 GAAAAGGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41849234;END=41849245;PERIOD=6;NSKIP=0;NFILT=0;DP=82;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:82:0:0:0:41.00|41.00:0|0:.:0:.:0:0|61:0|63:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7422 chr21 41850879 GANGSTR_444755 TCTCTCTCTCTC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.6;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=41850879;END=41850890;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:1:1:25.50|25.50:0|0:.:0:.:0:-5|1;-2|1;0|42:-2|1;0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7423 chr21 41851244 GANGSTR_444756 ATCATCATCATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41851244;END=41851255;PERIOD=3;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7424 chr21 41856214 GANGSTR_444757 CATCCATCCATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41856214;END=41856225;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7425 chr21 41857547 GANGSTR_444758 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41857547;END=41857558;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:33.50|21.50:0|0:.:0:.:0:0|33:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7426 chr21 41858363 GANGSTR_444759 AGGCAGGCAGGCAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41858363;END=41858378;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7427 chr21 41875720 GANGSTR_444760 TTTGGTTTTGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41875720;END=41875731;PERIOD=6;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:38.00|31.00:0|0:.:0:.:0:0|49:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7428 chr21 41877911 GANGSTR_444761 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41877911;END=41877922;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|48:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7429 chr21 41879207 GANGSTR_444762 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41879207;END=41879218;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|27:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7430 chr21 41879719 GANGSTR_444763 AAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41879719;END=41879726;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7431 chr21 41880501 GANGSTR_444764 TTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41880501;END=41880509;PERIOD=3;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7432 chr21 41884822 GANGSTR_444766 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41884822;END=41884837;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7433 chr21 41885784 GANGSTR_444767 AACAACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41885784;END=41885801;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|41:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7434 chr21 41888049 GANGSTR_444768 ACACACACACACACAC ACACACACACACAC . . INFRAME_PGEOM=0.98;INFRAME_UP=0.04;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41888049;END=41888064;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:66:0:0:1:31.40|34.60:0|0:17.13:-0.17:50:-0.6:-2|24;0|21:-2|23;0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7435 chr21 41889051 GANGSTR_444769 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=41889051;END=41889062;PERIOD=2;NSKIP=0;NFILT=0;DP=18;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:18:0:0:0:9.00|9.00:0|0:.:0:.:0:0|12:0|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7436 chr21 41890685 GANGSTR_444770 CATCCATCCATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41890685;END=41890696;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7437 chr21 41896047 GANGSTR_444771 ATTTATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41896047;END=41896066;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7438 chr21 41904796 GANGSTR_444772 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTATGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=41904796;END=41904837;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-10,-4;DP=52;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 2|1:-4|-10:1:0.5:52:0:1:0:25.89|26.11:0|0:50.07:0:46:0:-10|14;-6|1;-4|11:-10|14;-6|1;-4|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7439 chr21 41909224 GANGSTR_444773 AGACAGACAGAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41909224;END=41909235;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7440 chr21 41909950 GANGSTR_444774 GTGAGTGAGTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41909950;END=41909961;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7441 chr21 41910582 GANGSTR_444775 TGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41910582;END=41910591;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7442 chr21 41913535 GANGSTR_444776 TGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41913535;END=41913548;PERIOD=2;NSKIP=0;NFILT=0;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:78:0:0:0:39.00|39.00:0|0:.:0:.:0:0|58:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7443 chr21 41919802 GANGSTR_444777 AGGCAGGCAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41919802;END=41919813;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7444 chr21 41926958 GANGSTR_444778 TGAGTGAGTGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41926958;END=41926969;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7445 chr21 41928581 GANGSTR_444779 AGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41928581;END=41928592;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7446 chr21 41931042 GANGSTR_444780 AATAAAATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41931042;END=41931056;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7447 chr21 41932565 GANGSTR_444781 TAGCCTAGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41932565;END=41932574;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7448 chr21 41942844 GANGSTR_444782 AGAAGAAGAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41942844;END=41942855;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7449 chr21 41943915 GANGSTR_444783 AATGCAAATGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41943915;END=41943926;PERIOD=6;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|37:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7450 chr21 41945265 GANGSTR_444784 AAATAAATAAATAAATAAAC AAATAAATAAATAAATAAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41945265;END=41945280;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:67:0:0:0:32.00|35.00:0|0:92.47:-0.11:53:-0.76:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7451 chr21 41945924 GANGSTR_444785 ATAAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41945924;END=41945933;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7452 chr21 41948920 GANGSTR_444786 AATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=41948920;END=41948929;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:29.49|24.51:0|0:.:0:.:0:-1|1;0|38:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7453 chr21 41956519 GANGSTR_444787 CCTCCCTCCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41956519;END=41956530;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7454 chr21 41965894 GANGSTR_444788 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41965894;END=41965905;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7455 chr21 41968797 GANGSTR_444789 ATATATATATATATGC ATATATATATATATGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41968797;END=41968810;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:60:0:0:0:28.95|31.05:0|0:76.99:-0.05:46:-0.63:-11|1;0|40:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7456 chr21 41971134 GANGSTR_444790 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41971134;END=41971145;PERIOD=3;NSKIP=0;NFILT=0;DP=82;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:82:0:0:0:41.00|41.00:0|0:.:0:.:0:0|56:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7457 chr21 41972619 GANGSTR_444791 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41972619;END=41972630;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|53:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7458 chr21 41976792 GANGSTR_444792 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41976792;END=41976803;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7459 chr21 41980879 GANGSTR_444793 ATTAATTAATTAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41980879;END=41980894;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7460 chr21 41982515 GANGSTR_444794 TCCCCTCCCCTCCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41982515;END=41982529;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7461 chr21 41986245 GANGSTR_444795 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41986245;END=41986256;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7462 chr21 41986917 GANGSTR_444796 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41986917;END=41986928;PERIOD=2;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7463 chr21 41987918 GANGSTR_444797 ACACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41987918;END=41987933;PERIOD=2;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7464 chr21 41993164 GANGSTR_444798 ACAAACAAAAAAA ACAAACAAAAAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41993164;END=41993171;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=7;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:55:0:0:0:34.50|20.50:0|0:65.78:-1.12:54:-1.02:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7465 chr21 41993910 GANGSTR_444799 AGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41993910;END=41993921;PERIOD=2;NSKIP=0;NFILT=0;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:36:0:0:0:18.00|18.00:0|0:.:0:.:0:0|27:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7466 chr21 41995743 GANGSTR_444800 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=41995743;END=41995757;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7467 chr21 41996170 GANGSTR_444801 TAAAATAAAATAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=41996170;END=41996184;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7468 chr21 42000619 GANGSTR_444802 CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT CTATCTATCTATCTATCTATCTATCTATCTAT,CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=42000619;END=42000674;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-24,-12;DP=80;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-24|-12:1:0.5:80:0:2:0:27.59|52.41:0|0:35.76:-3.1:53:-0.9:-28|1;-24|11;-12|23:-28|1;-24|11;-12|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7469 chr21 42002547 GANGSTR_444803 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42002547;END=42002558;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7470 chr21 42007386 GANGSTR_444804 AAGAAAGAAAGA AAGAATGAAAGA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42007386;END=42007397;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:53:0:0:0:23.99|29.01:0|0:70.79:-0.26:45:-0.29:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7471 chr21 42021312 GANGSTR_444806 CACCACCACCAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42021312;END=42021323;PERIOD=3;NSKIP=0;NFILT=0;DP=33;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:33:0:0:0:16.50|16.50:0|0:.:0:.:0:0|27:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7472 chr21 42021812 GANGSTR_444807 GAGAGAGAGAGAGA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42021812;END=42021825;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:1:0:28.03|30.97:0|0:.:0:.:0:-2|1;0|44:-2|1;0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7473 chr21 42024259 GANGSTR_444808 AACAACAACAACAACAAAAA AACAACAACAACAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42024259;END=42024273;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-5;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=5;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-5|-5:1:1:60:0:0:1:30.00|30.00:0|0:13.43:0:.:0:-5|35;0|5:-5|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7474 chr21 42027977 GANGSTR_444809 CAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42027977;END=42027991;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7475 chr21 42028771 GANGSTR_444810 TATCTTATCTTATCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=42028771;END=42028785;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:1:1:34.50|34.50:0|0:.:0:.:0:-1|1;0|43:-5|1;0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7476 chr21 42031280 GANGSTR_444811 TATCTATCTATCTATCTATCTATCTATCTATCTATCTATC TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC . . INFRAME_PGEOM=0.96;INFRAME_UP=0.08;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42031280;END=42031319;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:73:0:0:0:34.22|38.78:0|0:6.43:-0.3:35:0:-32|5;-16|2;-7|2;0|13;4|10:0|13;4|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7477 chr21 42032339 GANGSTR_444812 AACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42032339;END=42032347;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7478 chr21 42034050 GANGSTR_444813 AAACAAACAAACAAACAAAC AAAACAAACAAACAAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42034050;END=42034069;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-3:1:0.5:49:0:0:0:23.00|26.00:0|0:127.83:-0.12:43:0:-3|20;0|14:-3|20;0|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7479 chr21 42040911 GANGSTR_444814 ACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42040911;END=42040924;PERIOD=2;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:32.00|36.00:0|0:.:0:.:0:0|47:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7480 chr21 42047050 GANGSTR_444815 CATGGCATGGCATGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42047050;END=42047064;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7481 chr21 42048477 GANGSTR_444816 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42048477;END=42048491;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:2:31.00|31.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7482 chr21 42056664 GANGSTR_444817 ATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42056664;END=42056675;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7483 chr21 42059478 GANGSTR_444818 CTCCCTCCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42059478;END=42059489;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:1:25.50|25.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7484 chr21 42061904 GANGSTR_444819 GGAGGGAGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42061904;END=42061915;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|25:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7485 chr21 42069908 GANGSTR_444820 TGTGTGTGTGTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42069908;END=42069919;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:1:0:28.50|28.50:0|0:.:0:.:0:-2|1;0|45:-2|1;0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7486 chr21 42074392 GANGSTR_444821 TTGATTTGATTTGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42074392;END=42074406;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.01|33.99:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7487 chr21 42075964 GANGSTR_444822 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42075964;END=42075975;PERIOD=3;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7488 chr21 42076111 GANGSTR_444823 CCCTCCCTCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42076111;END=42076122;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7489 chr21 42077570 GANGSTR_444824 ACTCACTCACTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42077570;END=42077581;PERIOD=4;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7490 chr21 42088307 GANGSTR_444826 TGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.96;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42088307;END=42088326;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:52:0:0:0:24.67|27.33:0|0:8.12:-0.13:37:-0.5:0|17;2|18:0|12;2|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7491 chr21 42091054 GANGSTR_444827 ACACACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42091054;END=42091071;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7492 chr21 42093157 GANGSTR_444828 CAATCAATCAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42093157;END=42093168;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7493 chr21 42105666 GANGSTR_444829 CTGCTCTGCTCTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42105666;END=42105680;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7494 chr21 42110162 GANGSTR_444830 AAATTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42110162;END=42110171;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7495 chr21 42114697 GANGSTR_444831 TCATCATCATCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42114697;END=42114708;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7496 chr21 42114774 GANGSTR_444832 ATCATCATCATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42114774;END=42114785;PERIOD=3;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|50:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7497 chr21 42120157 GANGSTR_444833 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42120157;END=42120168;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:1:2:35.00|35.00:0|0:.:0:.:0:-6|1;0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7498 chr21 42120374 GANGSTR_444834 TTGAAATTGAAATTGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42120374;END=42120391;PERIOD=6;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:0:38.50|38.50:0|0:.:0:.:0:0|42:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7499 chr21 42122216 GANGSTR_444835 TCCACTCCAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42122216;END=42122225;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7500 chr21 42122407 GANGSTR_444836 CTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42122407;END=42122418;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7501 chr21 42124617 GANGSTR_444837 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42124617;END=42124628;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7502 chr21 42124838 GANGSTR_444838 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42124838;END=42124849;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7503 chr21 42125082 GANGSTR_444839 TATTTTATTTATTTA TGTTTTATTTATTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42125085;END=42125096;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:70:0:0:0:26.50|43.50:0|0:74.91:-1.4:61:-0.74:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7504 chr21 42137273 GANGSTR_444841 TCCTCCTCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42137273;END=42137284;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7505 chr21 42138258 GANGSTR_444842 TATATATATATATA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42138258;END=42138271;PERIOD=2;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:1:0:33.50|33.50:0|0:.:0:.:0:-2|1;0|50:-2|1;0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7506 chr21 42142911 GANGSTR_444843 AGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42142911;END=42142918;PERIOD=4;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7507 chr21 42143502 GANGSTR_444844 CGGAACTCACTCACTC CAGAACTCACTCACTC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42143506;END=42143517;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:46:0:0:0:20.49|25.51:0|0:66.11:-0.27:43:-0.26:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7508 chr21 42149489 GANGSTR_444845 ATCATCATCATCATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42149489;END=42149503;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|47:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7509 chr21 42151213 GANGSTR_444846 CTGACTGACTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42151213;END=42151224;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7510 chr21 42162940 GANGSTR_444847 TAAAAATAAAAATAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42162940;END=42162957;PERIOD=6;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.50|30.50:0|0:.:0:.:0:0|34:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7511 chr21 42172869 GANGSTR_444850 TCTTTCTTTCTTTCTTCTCC TCTTTCTTTCTTTCTTCTCCT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.93;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.09;START=42172869;END=42172884;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=1;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|1:1:0.5:42:0:0:2:18.94|23.06:0|0:24.88:-0.14:31:-0.56:-1|1;0|15;1|12:0|16;1|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7512 chr21 42177630 GANGSTR_444851 TTTCTTTTCTTTTCTTTTTT TTTCTTTTCTTTTCTTTTC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.96;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=42177630;END=42177644;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=6;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:45:0:0:2:20.99|24.01:0|0:65.57:-0.07:32:0:-1|12;0|12:-1|13;0|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7513 chr21 42179036 GANGSTR_444852 AATCAATCAATCAATCAATCAATCAATCAATC AATCAATCAATCAATCAATCAATCAATC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42179036;END=42179067;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:48:0:0:0:24.00|24.00:0|0:8.55:0:.:0:-4|29:-4|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7514 chr21 42195130 GANGSTR_444853 TGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.87;INFRAME_UP=0.03;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42195130;END=42195153;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=49;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:49:0:2:0:27.62|21.38:0|0:20.54:-0.38:38:-0.29:-6|2;-4|14;0|22:-6|2;-4|13;0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7515 chr21 42197805 GANGSTR_444854 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42197805;END=42197816;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7516 chr21 42198910 GANGSTR_444855 GGAAGGGAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42198910;END=42198919;PERIOD=5;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7517 chr21 42200168 GANGSTR_444856 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42200168;END=42200179;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7518 chr21 42203875 GANGSTR_444857 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42203875;END=42203886;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7519 chr21 42210053 GANGSTR_444858 AAATTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42210053;END=42210062;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7520 chr21 42215295 GANGSTR_444859 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=1;INFRAME_UP=0.06;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42215295;END=42215334;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-10;DP=73;DSNP=0;DSTUTTER=4;DFLANKINDEL=3;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-10:1:0.5:73:0:4:3:41.82|31.18:0|0:176.37:-1.27:46:0:-16|1;-12|1;-10|15;-2|4;0|16;2|1:-12|1;-10|14;-2|2;0|15;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7521 chr21 42221274 GANGSTR_444860 AGGTGGCAGGTGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=42221274;END=42221287;PERIOD=7;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:18.50|22.50:0|0:.:0:.:0:0|19:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7522 chr21 42226535 GANGSTR_444862 CTGAGCCTGAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42226535;END=42226546;PERIOD=6;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|33:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7523 chr21 42227673 GANGSTR_444863 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42227673;END=42227682;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7524 chr21 42228075 GANGSTR_444864 AAGGAAAGGAAAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42228075;END=42228089;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:29.07|22.93:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7525 chr21 42229104 GANGSTR_444865 ACACACACACACACACACACACACACAC ACACACACACACACACACACACACACCCAC . . INFRAME_PGEOM=0.98;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42229104;END=42229131;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=67;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:67:0:1:0:33.52|33.48:0|0:44.37:0:53:-0.11:-2|1;0|18;2|17:0|16;2|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7526 chr21 42238348 GANGSTR_444866 ATTATTATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42238348;END=42238368;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:1:32.00|32.00:0|0:.:0:.:0:0|26:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7527 chr21 42239776 GANGSTR_444867 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42239776;END=42239787;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7528 chr21 42241994 GANGSTR_444868 GGGAGGGAGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42241994;END=42242005;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7529 chr21 42251842 GANGSTR_444869 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42251842;END=42251856;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7530 chr21 42255167 GANGSTR_444870 TCTCTTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42255167;END=42255176;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7531 chr21 42259500 GANGSTR_444872 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42259500;END=42259515;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7532 chr21 42260705 GANGSTR_444873 TTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42260705;END=42260719;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7533 chr21 42262703 GANGSTR_444874 AGCAGCAGCAGCAGCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=42262703;END=42262720;PERIOD=3;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|24:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7534 chr21 42263166 GANGSTR_444875 CAAACAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42263166;END=42263185;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:32.99|36.01:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7535 chr21 42273653 GANGSTR_444876 TGGACTGGAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42273653;END=42273662;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7536 chr21 42275304 GANGSTR_444877 AAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42275304;END=42275323;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7537 chr21 42276996 GANGSTR_444878 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42276996;END=42277007;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7538 chr21 42283247 GANGSTR_444880 CCTCCTCCTCCT CCTCCTCCTGCT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42283247;END=42283258;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:51:0:0:0:25.50|25.50:0|0:13.51:0:.:0:0|36:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7539 chr21 42285301 GANGSTR_444881 AGACACACACACACACACACACACACACACACACACACACACAG ACACACACACACACACACACACATACACACAC,AGACACACACACACACACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.37;INFRAME_UP=0.22;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=42285303;END=42285342;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-12,14;DP=63;DSNP=0;DSTUTTER=5;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-12|14:1:0.5:63:0:5:0:31.29|31.71:0|0:123.3:-0:59:-0.36:-16|1;-12|12;-10|3;0|10;8|1;14|3;16|2:-16|1;-12|15;14|6;16|3:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7540 chr21 42290868 GANGSTR_444882 TTGGTTGGTTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42290868;END=42290879;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7541 chr21 42294444 GANGSTR_444883 CACACACACACACACACACACACA CACACACACACACACACAAAAA,CACACACACACACACACACAAA . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.03;START=42294444;END=42294467;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,-2;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|-2:1:0.5:54:0:1:1:31.70|22.30:0|0:53.59:-0.61:47:-1.35:-4|1;-2|30;-1|1;0|1:-4|1;-2|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7542 chr21 42294728 GANGSTR_444884 TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC TATCTATCTATCTATCTATCTATCTATC,TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=42294728;END=42294771;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-16,4;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 2|1:4|-16:1:0.5:58:0:0:0:26.55|31.45:0|0:9.25:-0.33:31:-0.14:-16|16;-2|1;4|7:-16|14;4|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7543 chr21 42308140 GANGSTR_444886 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42308140;END=42308154;PERIOD=5;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:0:0:40.00|40.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7544 chr21 42315975 GANGSTR_444887 TGGGGTGGGGTGGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42315975;END=42315989;PERIOD=5;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7545 chr21 42321668 GANGSTR_444888 TAAAATAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42321668;END=42321677;PERIOD=5;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:1:38.00|38.00:0|0:.:0:.:0:0|58:0|58:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7546 chr21 42336995 GANGSTR_444889 ATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42336995;END=42337009;PERIOD=3;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7547 chr21 42350842 GANGSTR_444891 TTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42350842;END=42350861;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:1:35.50|35.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7548 chr21 42366008 GANGSTR_444892 CACACACACACACACA CACACACACACACACACA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.08;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=42366008;END=42366023;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=37;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:37:0:1:0:17.68|19.32:0|0:4.11:-0.15:27:-0.35:-2|1;-1|1;0|10;2|12:-2|1;0|10;2|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7549 chr21 42369246 GANGSTR_444893 TTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42369246;END=42369260;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|37:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7550 chr21 42378145 GANGSTR_444895 GTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.06;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42378145;END=42378164;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:55:0:0:0:24.16|30.84:0|0:8.83:-0.61:36:-2.87:0|14;2|21:0|13;2|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7551 chr21 42382084 GANGSTR_444896 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42382084;END=42382095;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7552 chr21 42382828 GANGSTR_444897 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42382828;END=42382839;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7553 chr21 42387000 GANGSTR_444898 AAATTAAAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=42387000;END=42387011;PERIOD=6;NSKIP=0;NFILT=0;DP=35;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:0:0:17.50|17.50:0|0:.:0:.:0:0|19:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7554 chr21 42388187 GANGSTR_444900 ATAAAATAAAATAAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42388187;END=42388206;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7555 chr21 42389918 GANGSTR_444901 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42389918;END=42389929;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7556 chr21 42390400 GANGSTR_444902 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42390400;END=42390411;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7557 chr21 42393624 GANGSTR_444903 TCTGCCTCTGCCTCTGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42393624;END=42393641;PERIOD=6;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|30:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7558 chr21 42394815 GANGSTR_444904 AGAGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=42394815;END=42394828;PERIOD=2;NSKIP=0;NFILT=0;DP=31;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:31:0:0:0:15.50|15.50:0|0:.:0:.:0:0|18:0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7559 chr21 42399836 GANGSTR_444905 TATCTATCTATCTATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42399836;END=42399851;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7560 chr21 42401769 GANGSTR_444906 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42401769;END=42401780;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:-3|1;0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7561 chr21 42408905 GANGSTR_444907 TGATTGATTGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42408905;END=42408916;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7562 chr21 42411149 GANGSTR_444908 AGAAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42411149;END=42411158;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7563 chr21 42416118 GANGSTR_444909 TCTCTCTCTCTCTC TCTCTCTCTCTCTCTC . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42416118;END=42416131;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=73;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:73:0:1:0:36.50|36.50:0|0:13.24:0:.:0:-23|3;0|1;2|47:0|1;2|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7564 chr21 42423698 GANGSTR_444910 TTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.06;START=42423698;END=42423712;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:2:23.00|23.00:0|0:.:0:.:0:-1|1;0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7565 chr21 42435298 GANGSTR_444913 AAATAAAATAAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.02;START=42435298;END=42435312;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:2:33.50|33.50:0|0:.:0:.:0:0|38;1|1:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7566 chr21 42442661 GANGSTR_444914 TCTCTCTCTCTC TCTCTCTCTC . . INFRAME_PGEOM=0.98;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42442661;END=42442672;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:52:0:0:1:25.55|26.45:0|0:13.2:-0:39:-0.28:-2|16;0|16:-2|15;0|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7567 chr21 42444287 GANGSTR_444915 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=42444287;END=42444298;PERIOD=4;NSKIP=0;NFILT=0;DP=34;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:34:0:0:0:17.00|17.00:0|0:.:0:.:0:0|19:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7568 chr21 42445041 GANGSTR_444916 TGTTTGTTTGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42445041;END=42445060;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7569 chr21 42447787 GANGSTR_444917 GGCCAGGCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42447787;END=42447796;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7570 chr21 42454066 GANGSTR_444918 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42454066;END=42454077;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7571 chr21 42454400 GANGSTR_444919 TTGTTTTGTTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42454400;END=42454414;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7572 chr21 42457460 GANGSTR_444920 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42457460;END=42457471;PERIOD=3;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|50:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7573 chr21 42463710 GANGSTR_444921 CAGCCAGCCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42463710;END=42463721;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|56:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7574 chr21 42477648 GANGSTR_444923 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42477648;END=42477659;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7575 chr21 42491892 GANGSTR_444924 AAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42491892;END=42491899;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|51:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7576 chr21 42492063 GANGSTR_444925 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42492063;END=42492074;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7577 chr21 42504324 GANGSTR_444927 AAGCAAGCAAGCAAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42504324;END=42504339;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:24.44|27.56:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7578 chr21 42505344 GANGSTR_444928 AATAATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42505344;END=42505361;PERIOD=3;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|28:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7579 chr21 42510461 GANGSTR_444929 AGTGAGTGAGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42510461;END=42510472;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7580 chr21 42512744 GANGSTR_444930 GTGGTGGTGGTGGTGGTGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42512744;END=42512764;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7581 chr21 42513500 GANGSTR_444931 TCAATCAATCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42513500;END=42513511;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7582 chr21 42517306 GANGSTR_444932 TTCCCTTCCCTTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42517306;END=42517320;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:1:25.50|25.50:0|0:.:0:.:0:0|30;15|1:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7583 chr21 42522776 GANGSTR_444933 GTGTGGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42522776;END=42522785;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7584 chr21 42522843 GANGSTR_444934 TGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42522843;END=42522856;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|47:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7585 chr21 42528324 GANGSTR_444935 AACCCAACCCAACCCAACCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42528324;END=42528343;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7586 chr21 42529230 GANGSTR_444936 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42529230;END=42529241;PERIOD=3;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|54:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7587 chr21 42533158 GANGSTR_444937 TTATTATTATTA . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42533158;END=42533169;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:1:0:32.00|32.00:0|0:.:0:.:0:0|42;3|1:0|41;3|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7588 chr21 42536267 GANGSTR_444938 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42536267;END=42536281;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:1:0:31.50|31.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7589 chr21 42540059 GANGSTR_444939 CCGCCGCCGCCG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42540059;END=42540070;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:1:2:31.00|31.00:0|0:.:0:.:0:-3|1;0|43:-3|1;0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7590 chr21 42547100 GANGSTR_444941 AAATGAAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42547100;END=42547109;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7591 chr21 42550357 GANGSTR_444942 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42550357;END=42550368;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7592 chr21 42551682 GANGSTR_444943 TGGGGTGGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42551682;END=42551691;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7593 chr21 42551936 GANGSTR_444944 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42551936;END=42551947;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7594 chr21 42566733 GANGSTR_444945 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42566733;END=42566744;PERIOD=3;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|55:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7595 chr21 42568882 GANGSTR_444947 TTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42568882;END=42568896;PERIOD=5;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:0:38.50|38.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7596 chr21 42570639 GANGSTR_444949 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=42570639;END=42570653;PERIOD=5;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7597 chr21 42571238 GANGSTR_444951 CCCTCCCTCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42571238;END=42571249;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7598 chr21 42587820 GANGSTR_444952 GTGTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42587820;END=42587833;PERIOD=2;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7599 chr21 42594814 GANGSTR_444953 GGCCTGGCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42594814;END=42594823;PERIOD=5;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7600 chr21 42602763 GANGSTR_444954 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42602763;END=42602777;PERIOD=5;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|56:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7601 chr21 42604350 GANGSTR_444955 AAACAAACAAACAAAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42604350;END=42604365;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:1:0:33.50|33.50:0|0:.:0:.:0:-4|1;0|43:-4|1;0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7602 chr21 42607782 GANGSTR_444956 AATGAATGAATGAATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42607782;END=42607805;PERIOD=4;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:0:39.50|39.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7603 chr21 42611113 GANGSTR_444957 GGGGTGGGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42611113;END=42611122;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7604 chr21 42614267 GANGSTR_444958 TCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTC . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42614267;END=42614284;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=59;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:59:0:1:2:26.18|32.82:0|0:10.51:-0.34:46:-0.12:-2|1;0|19;1|1;2|25:-2|1;0|18;2|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7605 chr21 42618425 GANGSTR_444959 AAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42618425;END=42618434;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7606 chr21 42619578 GANGSTR_444960 GGCGGGGCGGCGGGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42619578;END=42619593;PERIOD=8;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:25.06|30.94:0|0:.:0:.:0:0|25:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7607 chr21 42632070 GANGSTR_444961 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42632070;END=42632084;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7608 chr21 42632801 GANGSTR_444962 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42632801;END=42632812;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:3:28.50|28.50:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7609 chr21 42633476 GANGSTR_444963 TTATATTTATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42633476;END=42633487;PERIOD=6;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|58:0|58:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7610 chr21 42636517 GANGSTR_444964 GAGAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42636517;END=42636530;PERIOD=2;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7611 chr21 42636911 GANGSTR_444965 TAAATAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42636911;END=42636926;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7612 chr21 42640870 GANGSTR_444966 TTCTCTTCTCTTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42640870;END=42640884;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7613 chr21 42642348 GANGSTR_444967 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42642348;END=42642359;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|50:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7614 chr21 42644398 GANGSTR_444968 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42644398;END=42644409;PERIOD=2;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|50:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7615 chr21 42647459 GANGSTR_444969 CTGCTGCTGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42647459;END=42647470;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7616 chr21 42650952 GANGSTR_444970 TTGTTTTGTT TTGTTTTGTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.92;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.04;START=42650952;END=42650961;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=1;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|1:1:0.5:61:0:0:1:34.67|26.33:0|0:56.47:-0.48:52:-0.11:0|26;1|16;2|1:0|26;1|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7617 chr21 42660881 GANGSTR_444971 CTCTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42660881;END=42660894;PERIOD=2;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|38:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7618 chr21 42663099 GANGSTR_444972 CACACACACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42663099;END=42663116;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:37.37|25.63:0|0:.:0:.:0:0|44:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7619 chr21 42664148 GANGSTR_444973 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42664148;END=42664159;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7620 chr21 42666356 GANGSTR_444974 GAATGAATGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42666356;END=42666367;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7621 chr21 42666453 GANGSTR_444975 TGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42666453;END=42666468;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|44:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7622 chr21 42667602 GANGSTR_444976 CATCCCATCCCATCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42667602;END=42667616;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7623 chr21 42670358 GANGSTR_444977 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42670358;END=42670367;PERIOD=5;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:0:0:40.00|40.00:0|0:.:0:.:0:0|58:0|58:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7624 chr21 42675782 GANGSTR_444978 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=42675782;END=42675811;PERIOD=2;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:2:1:21.00|21.00:0|0:.:0:.:0:-25|1;-2|1;-1|1;0|21:-2|2;0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7625 chr21 42676140 GANGSTR_444979 CTGCGCCTGCGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42676140;END=42676151;PERIOD=6;NSKIP=0;NFILT=0;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:36:0:0:1:18.00|18.00:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7626 chr21 42677383 GANGSTR_444980 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42677383;END=42677397;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|56:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7627 chr21 42685728 GANGSTR_444981 TTGTTGTTGTTGTTGTTG TTGTTGTTGTTGTTGTTGTTG . . INFRAME_PGEOM=0.96;INFRAME_UP=0.04;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42685728;END=42685745;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=3;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|3:1:0.5:54:0:0:0:28.89|25.11:0|0:12.84:-0.28:39:-0.7:-7|1;0|22;3|15:0|22;3|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7628 chr21 42688263 GANGSTR_444982 GCTGGGCTGGGCTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42688263;END=42688277;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7629 chr21 42690731 GANGSTR_444983 GGAGGGAGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42690731;END=42690742;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7630 chr21 42693571 GANGSTR_444984 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42693571;END=42693580;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7631 chr21 42693862 GANGSTR_444985 CTTCCTTCCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42693862;END=42693873;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7632 chr21 42697024 GANGSTR_444986 CAAAAACAAAAACAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42697024;END=42697041;PERIOD=6;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|41:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7633 chr21 42702758 GANGSTR_444987 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42702758;END=42702769;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|53:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7634 chr21 42709735 GANGSTR_444988 GTGTGTGTGTGTGT GTCTGTGTGTGTGT . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42709735;END=42709748;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:54:0:1:0:29.97|24.03:0|0:75.93:-0.32:50:0:-2|1;0|43:-2|1;0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7635 chr21 42712839 GANGSTR_444990 TATATATATATATA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=42712839;END=42712852;PERIOD=2;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:1:1:23.50|23.50:0|0:.:0:.:0:-2|1;-1|1;0|34:-2|1;0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7636 chr21 42716047 GANGSTR_444991 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42716047;END=42716058;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7637 chr21 42718496 GANGSTR_444992 GGTGTGGGTGTGGGTGTGGC GGTGTGGGTGTGGGTGTGGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42718496;END=42718513;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:55:0:0:0:24.34|30.66:0|0:56.29:-0.35:44:-0.27:0|29:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7638 chr21 42721064 GANGSTR_444993 TGCTGCTGCTGCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42721064;END=42721078;PERIOD=3;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|49:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7639 chr21 42722767 GANGSTR_444994 TTCCTTCCTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42722767;END=42722778;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:1:33.00|33.00:0|0:.:0:.:0:-13|1;0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7640 chr21 42724724 GANGSTR_444996 AAATAAATAAATAAATAAATAAATAAAT AAATAAATAAATAAATAAATAAATAAATAAACAAAT . . INFRAME_PGEOM=0.9;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=42724724;END=42724751;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=8;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|8:1:0.5:64:0:0:0:36.00|28.00:0|0:71.95:-0.52:46:0:0|18;8|6:0|16;8|5:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7641 chr21 42727484 GANGSTR_444997 AAACAAACAAACAAACAAACAAAC AAACAAACAAACAAACAAAC,AAACAAACAAACAAACAAACAAACAAAC . . INFRAME_PGEOM=0.91;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42727484;END=42727507;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4,4;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|4:1:0.5:68:0:0:0:29.98|38.02:0|0:17.8:-0.61:36:-0.3:-10|1;-6|1;-4|13;2|1;4|16:-4|12;4|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7642 chr21 42727968 GANGSTR_444998 ACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.62;INFRAME_UP=0.1;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=42727968;END=42728011;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6,4;DP=67;DSNP=0;DSTUTTER=4;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-6|4:1:0.5:67:0:4:0:33.93|33.07:0|0:17.2:0:34:-0.14:-8|2;-6|14;0|5;4|7;6|1:-8|1;-6|13;0|1;4|9;6|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7643 chr21 42729629 GANGSTR_444999 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42729629;END=42729640;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7644 chr21 42734452 GANGSTR_445000 GGGCAGGGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42734452;END=42734461;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7645 chr21 42737131 GANGSTR_445001 TTTGTTTGTTTGTTTGTTTGTTTGTTTG TTTGTTTGTTTGTTTGTTTGTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42737131;END=42737158;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:58:0:0:0:29.00|29.00:0|0:9.45:0:.:0:-4|32:-4|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7646 chr21 42740567 GANGSTR_445002 TGAGGGTGAGGGTGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42740567;END=42740584;PERIOD=6;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7647 chr21 42747144 GANGSTR_445003 TGGTTGGTTGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42747144;END=42747155;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7648 chr21 42748474 GANGSTR_445004 CAACAACAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42748474;END=42748491;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7649 chr21 42755289 GANGSTR_445005 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42755289;END=42755304;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7650 chr21 42762413 GANGSTR_445006 TGCCTGCCTGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42762413;END=42762424;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7651 chr21 42762980 GANGSTR_445007 AGGGAGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42762980;END=42762991;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7652 chr21 42763612 GANGSTR_445008 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42763612;END=42763623;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|43:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7653 chr21 42765453 GANGSTR_445009 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42765453;END=42765464;PERIOD=2;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|52:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7654 chr21 42766866 GANGSTR_445010 AGAGAGAGAGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42766866;END=42766885;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|37:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7655 chr21 42771494 GANGSTR_445011 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42771494;END=42771508;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7656 chr21 42772631 GANGSTR_445012 TTTATTTATTTATTTA TTTATTTATTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42772631;END=42772646;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:69:0:0:0:34.50|34.50:0|0:15.43:0:.:0:-4|50:-4|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7657 chr21 42775438 GANGSTR_445014 CCTGCCTGCCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42775438;END=42775449;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:1:22.50|22.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7658 chr21 42779018 GANGSTR_445015 GAGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42779018;END=42779025;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7659 chr21 42784421 GANGSTR_445016 GACAAAGACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42784421;END=42784432;PERIOD=6;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7660 chr21 42788899 GANGSTR_445017 TACTACTACTACTACTACTACTACTAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=42788899;END=42788925;PERIOD=3;NSKIP=0;NFILT=0;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:36:0:0:0:18.00|18.00:0|0:.:0:.:0:0|21:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7661 chr21 42789123 GANGSTR_445018 AGGGTGAGGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42789123;END=42789134;PERIOD=6;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|41:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7662 chr21 42792215 GANGSTR_445019 GGGCGCGGGCGCGGGCGC GGGCGCGGGCGC,GGGCGCGGGCGCGGGCGCGGGCGC . . INFRAME_PGEOM=0.93;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=42792215;END=42792232;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=-6,6;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-6|6:1:0.5:47:0:0:2:24.45|22.55:0|0:17.72:0:35:0:-6|16;-2|3;0|2;6|11:-6|17;6|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7663 chr21 42796154 GANGSTR_445020 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.08;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=42796154;END=42796189;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4,-2;DP=54;DSNP=0;DSTUTTER=3;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|-2:1:0.5:54:0:3:2:26.60|27.40:0|0:5:-0:29:-0.15:-6|3;-4|11;-2|12:-6|2;-4|9;-2|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7664 chr21 42797557 GANGSTR_445021 TTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42797557;END=42797571;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7665 chr21 42798115 GANGSTR_445022 GCGGGGCGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42798115;END=42798124;PERIOD=5;NSKIP=0;NFILT=0;DP=34;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:34:0:0:1:17.00|17.00:0|0:.:0:.:0:0|27:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7666 chr21 42799831 GANGSTR_445023 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42799831;END=42799842;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:2:29.50|29.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7667 chr21 42802391 GANGSTR_445024 TGGGTGGGTGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42802391;END=42802402;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7668 chr21 42812413 GANGSTR_445025 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42812413;END=42812427;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7669 chr21 42814646 GANGSTR_445026 GATGGATGGATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42814646;END=42814657;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7670 chr21 42820731 GANGSTR_445027 ACAAACAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42820731;END=42820742;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:-11|1;0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7671 chr21 42820858 GANGSTR_445028 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=42820858;END=42820905;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-24;DP=59;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-24|-24:1:1:59:0:1:0:29.50|29.50:0|0:10.21:0:.:0:-26|1;-24|33;-21|1:-26|1;-24|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7672 chr21 42821375 GANGSTR_445029 CAATTCAATTCAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42821375;END=42821389;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7673 chr21 42824525 GANGSTR_445030 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=42824525;END=42824536;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7674 chr21 42829932 GANGSTR_445031 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42829932;END=42829943;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7675 chr21 42838500 GANGSTR_445032 CCTCCTCCTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42838500;END=42838511;PERIOD=3;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7676 chr21 42843517 GANGSTR_445033 CAGTACAGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42843517;END=42843526;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7677 chr21 42849810 GANGSTR_445038 CCACCACCACCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42849810;END=42849821;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|35:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7678 chr21 42851920 GANGSTR_445039 TGATTGATTGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42851920;END=42851931;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7679 chr21 42855220 GANGSTR_445040 CTTCTTCTTCTTCTTCTT CTTCTTCTTCTTCTTTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.07;START=42855220;END=42855237;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:51:0:0:2:25.50|25.50:0|0:12.18:0:.:0:-2|1;-1|1;0|23:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7680 chr21 42857009 GANGSTR_445041 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.6;INFRAME_UP=0.04;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=42857009;END=42857044;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-8;DP=53;DSNP=0;DSTUTTER=3;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-8|-8:1:1:53:0:3:1:26.50|26.50:0|0:11.05:0:.:0:-14|1;-12|1;-10|2;-8|30:-14|1;-12|1;-10|1;-8|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7681 chr21 42859723 GANGSTR_445042 TTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42859723;END=42859734;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7682 chr21 42860561 GANGSTR_445043 TGTTTTGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42860561;END=42860580;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7683 chr21 42864123 GANGSTR_445044 AAACAAACAAACAAACAAACAAC AAACAAACAAACAAACAAACAACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.2;START=42864123;END=42864142;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=1;DP=59;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:1|1:1:1:59:0:1:2:29.50|29.50:0|0:11.87:0:.:0:0|5;1|18;2|2:1|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7684 chr21 42867126 GANGSTR_445045 TTTGGTTTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42867126;END=42867135;PERIOD=5;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7685 chr21 42867618 GANGSTR_445046 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42867618;END=42867629;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:1:35.50|35.50:0|0:.:0:.:0:0|59:0|57:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7686 chr21 42873057 GANGSTR_445047 GGAAGGAAGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42873057;END=42873068;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7687 chr21 42874436 GANGSTR_445049 CACCACCACCAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42874436;END=42874447;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7688 chr21 42875208 GANGSTR_445050 CAGGCAGGCAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42875208;END=42875219;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7689 chr21 42877162 GANGSTR_445051 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=42877162;END=42877177;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|20:0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7690 chr21 42880043 GANGSTR_445052 CCTCCGCCTCCGCCTCCG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42880043;END=42880060;PERIOD=6;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7691 chr21 42882255 GANGSTR_445053 TTATAAATATTATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=42882255;END=42882272;PERIOD=9;NSKIP=0;NFILT=0;DP=22;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:22:0:0:0:11.00|11.00:0|0:.:0:.:0:0|10:0|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7692 chr21 42889109 GANGSTR_445054 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42889109;END=42889124;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7693 chr21 42889781 GANGSTR_445055 CAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42889781;END=42889789;PERIOD=3;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7694 chr21 42896745 GANGSTR_445056 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42896745;END=42896756;PERIOD=3;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7695 chr21 42896869 GANGSTR_445057 CTGCTGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42896869;END=42896877;PERIOD=3;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7696 chr21 42898195 GANGSTR_445058 ACCCCTCGACCCCTCGACCCCTCG ACCCCTCGACCCCTCGACCCCTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42898195;END=42898218;PERIOD=8;NSKIP=0;NFILT=0;BPDIFFS=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:70:0:0:0:35.00|35.00:0|0:16.24:0:.:0:0|33:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7697 chr21 42901445 GANGSTR_445059 AGGGAGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42901445;END=42901456;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:28.48|19.52:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7698 chr21 42904934 GANGSTR_445060 TTTATTTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42904934;END=42904953;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7699 chr21 42905338 GANGSTR_445061 TAATAATAATAATTT TAATAATAATAATTAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.91;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42905338;END=42905349;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=2;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:62:0:0:0:31.99|30.01:0|0:187.84:-0.05:52:-0.41:0|27;2|18:0|25;2|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7700 chr21 42907192 GANGSTR_445062 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42907192;END=42907211;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:31.95|33.05:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7701 chr21 42912041 GANGSTR_445064 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42912041;END=42912052;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7702 chr21 42915854 GANGSTR_445065 GGAAGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42915854;END=42915861;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|56:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7703 chr21 42916323 GANGSTR_445066 AAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42916323;END=42916337;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7704 chr21 42922175 GANGSTR_445067 GGAGGAGGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42922175;END=42922186;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:37.50|25.50:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7705 chr21 42922750 GANGSTR_445068 GGAGGAGGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42922750;END=42922761;PERIOD=3;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7706 chr21 42924188 GANGSTR_445069 TCCTCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42924188;END=42924196;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:26.50|30.50:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7707 chr21 42928329 GANGSTR_445070 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42928329;END=42928340;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7708 chr21 42937927 GANGSTR_445071 AAACAAACAAACAAAC AAACAAACAAAAAAAAAA,AAACAAACAAACAAAAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.63;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.19;START=42937927;END=42937942;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=2,2;DP=47;DSNP=0;DSTUTTER=1;DFLANKINDEL=3;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:2|2:1:0.5:47:0:1:3:14.86|32.14:0|0:2.73:-2.22:35:-3.79:0|1;1|1;2|18;3|1:2|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7709 chr21 42942697 GANGSTR_445072 AAATAAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42942697;END=42942706;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:1:23.50|23.50:0|0:.:0:.:0:0|36;14|1:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7710 chr21 42946523 GANGSTR_445073 TCCCTCCCTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42946523;END=42946534;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|51:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7711 chr21 42946749 GANGSTR_445074 TTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42946749;END=42946756;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7712 chr21 42948373 GANGSTR_445075 AGAGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=42948373;END=42948386;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7713 chr21 42953754 GANGSTR_445076 AAGCAAGCAAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=42953754;END=42953765;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:27.50|23.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7714 chr21 43008886 GANGSTR_445077 CTGTTCTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=43008886;END=43008895;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:1:1:25.00|25.00:0|0:.:0:.:0:-1|1;0|39:-5|1;0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7715 chr21 43026859 GANGSTR_445078 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43026859;END=43026870;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7716 chr21 43032793 GANGSTR_445079 TTTTCTTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=43032793;END=43032807;PERIOD=5;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7717 chr21 43037275 GANGSTR_445080 TTTCTTTTCTTTTCTTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=43037275;END=43037294;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7718 chr21 43038875 GANGSTR_445082 TATCTATCTATCTATCTATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=43038875;END=43038894;PERIOD=4;NSKIP=0;NFILT=0;DP=24;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:24:0:0:0:12.00|12.00:0|0:.:0:.:0:0|19:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7719 chr21 43039245 GANGSTR_445083 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.96;INFRAME_UP=0.15;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43039245;END=43039276;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,4;DP=54;DSNP=0;DSTUTTER=4;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|4:1:0.5:54:0:4:0:30.13|23.87:0|0:19.36:-0.41:34:0:-2|17;-1|1;0|8;2|1;4|5:-4|1;-2|15;0|1;2|1;4|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7720 chr21 43040512 GANGSTR_445084 ATGAATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43040512;END=43040519;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7721 chr21 43046700 GANGSTR_445085 GTTTGTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43046700;END=43046715;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7722 chr21 43050220 GANGSTR_445086 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43050220;END=43050235;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7723 chr21 43054039 GANGSTR_445087 TCCATCCATCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43054039;END=43054050;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:41.50|28.50:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7724 chr21 43058091 GANGSTR_445088 TTCCTTCCTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43058091;END=43058102;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7725 chr21 43058879 GANGSTR_445089 TTAATTAATTAA TTAATTTATTAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43058879;END=43058890;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:49:0:0:0:25.97|23.03:0|0:76.84:-0.12:45:-0.25:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7726 chr21 43063188 GANGSTR_445091 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43063188;END=43063203;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7727 chr21 43064291 GANGSTR_445092 AAATTTAAATTTAAATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43064291;END=43064308;PERIOD=6;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:2:32.00|32.00:0|0:.:0:.:0:-1|1;0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7728 chr21 43072555 GANGSTR_445093 TTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43072555;END=43072569;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7729 chr21 43081854 GANGSTR_445095 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.99;INFRAME_UP=0.04;INFRAME_DOWN=0.14;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=43081854;END=43081899;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-8;DP=54;DSNP=0;DSTUTTER=6;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-8:1:0.5:54:0:6:1:28.18|25.82:0|0:91.04:-0.13:37:-0.37:-15|1;-10|2;-8|14;-2|2;0|13:-10|2;-8|13;-2|2;0|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7730 chr21 43084024 GANGSTR_445096 CAACAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43084024;END=43084038;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7731 chr21 43086067 GANGSTR_445097 GTGGGTGGGTGG GTGAGTGGGTGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43086067;END=43086078;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:45:0:0:0:18.51|26.49:0|0:42.22:-0.59:38:-0.74:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7732 chr21 43087330 GANGSTR_445098 CATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43087330;END=43087341;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7733 chr21 43090985 GANGSTR_445099 GAGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43090985;END=43090992;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:1:26.00|40.00:0|0:.:0:.:0:0|54:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7734 chr21 43092279 GANGSTR_445100 GAGTGAGTGAGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43092279;END=43092290;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|59:0|59:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7735 chr21 43096037 GANGSTR_445101 AAAATAATAATAAT ATAATAATAATAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.02;START=43096039;END=43096050;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:49:0:0:2:24.52|24.48:0|0:75.07:0:42:0:0|39;1|1:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7736 chr21 43099157 GANGSTR_445102 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43099157;END=43099168;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7737 chr21 43100834 GANGSTR_445103 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43100834;END=43100853;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7738 chr21 43103177 GANGSTR_445104 AGCCAGCCAGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43103177;END=43103188;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7739 chr21 43103774 GANGSTR_445105 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43103774;END=43103785;PERIOD=2;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:1:32.00|32.00:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7740 chr21 43106725 GANGSTR_445106 AAGGAAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43106725;END=43106732;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7741 chr21 43111921 GANGSTR_445107 CTTCCTTCCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43111921;END=43111932;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7742 chr21 43115255 GANGSTR_445108 ACGTGGCCTGCCTGCCT ATGTGGCCTGCCTGCCT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43115260;END=43115271;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:64:0:0:0:30.99|33.01:0|0:89.71:-0.05:58:-0.94:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7743 chr21 43117150 GANGSTR_445109 TTTATTTATTTATTTA TTTGTTTATTTATTTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43117150;END=43117165;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:66:0:0:0:34.49|31.51:0|0:116.59:-0.1:63:-0.1:0|46:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7744 chr21 43117874 GANGSTR_445110 TTTTATGTTTTATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43117874;END=43117887;PERIOD=7;NSKIP=0;NFILT=0;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:78:0:0:1:39.00|39.00:0|0:.:0:.:0:0|45;1|1:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7745 chr21 43130625 GANGSTR_445111 GGAGGGAGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43130625;END=43130636;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:31.48|33.52:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7746 chr21 43133144 GANGSTR_445112 AAACAAACAAAC AGACAAACAAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43133144;END=43133155;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:37:0:0:0:16.51|20.49:0|0:46.14:-0.22:32:0:0|25:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7747 chr21 43136322 GANGSTR_445113 GATCAGATCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43136322;END=43136331;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:-2|1;0|38:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7748 chr21 43136396 GANGSTR_445114 AGGCAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43136396;END=43136403;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:-14|1;0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7749 chr21 43136762 GANGSTR_445115 GGAGGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43136762;END=43136770;PERIOD=3;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7750 chr21 43139726 GANGSTR_445116 TAAAAATAAAAATAAAAATAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43139726;END=43139749;PERIOD=6;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.00|33.00:0|0:.:0:.:0:0|30:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7751 chr21 43143194 GANGSTR_445117 ACCCCACCCCACCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43143194;END=43143208;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7752 chr21 43143802 GANGSTR_445118 TAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43143802;END=43143813;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7753 chr21 43149067 GANGSTR_445119 ATGAATGAATGAATGAATGAATGA ATGAATGAATGAATGAATGAATGAATGA . . INFRAME_PGEOM=0.98;INFRAME_UP=0.04;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43149067;END=43149090;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:67:0:0:1:32.81|34.19:0|0:12.44:-0:41:-0.68:-10|3;0|18;4|14:0|18;4|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7754 chr21 43153019 GANGSTR_445120 TTTCCTTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43153019;END=43153028;PERIOD=5;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:1:20.00|20.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7755 chr21 43153174 GANGSTR_445121 ACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.93;INFRAME_UP=0.12;INFRAME_DOWN=0.13;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=43153174;END=43153201;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=6,10;DP=53;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:6|10:1:0.5:53:0:2:0:24.86|28.14:0|0:13.67:-0.35:27:-0.15:0|5;4|2;5|2;6|9;7|1;10|10:4|2;6|5;10|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7756 chr21 43154169 GANGSTR_445122 TCCTCCTCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43154169;END=43154180;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7757 chr21 43156530 GANGSTR_445123 GAGGGAGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=43156530;END=43156541;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:1:2:27.50|27.50:0|0:.:0:.:0:-1|1;0|40:-8|1;0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7758 chr21 43159118 GANGSTR_445124 AGGTAGGTAGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43159118;END=43159129;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7759 chr21 43167544 GANGSTR_445125 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43167544;END=43167555;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7760 chr21 43169747 GANGSTR_445126 AATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43169747;END=43169754;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7761 chr21 43170843 GANGSTR_445127 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43170843;END=43170854;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7762 chr21 43173163 GANGSTR_445128 AATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=43173163;END=43173171;PERIOD=3;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|62:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7763 chr21 43173433 GANGSTR_445129 AAAGAAAAGAAAAGAAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43173433;END=43173452;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:28.00|30.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7764 chr21 43179259 GANGSTR_445130 TGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43179259;END=43179266;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7765 chr21 43182165 GANGSTR_445131 AACAAACAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43182165;END=43182176;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7766 chr21 43196544 GANGSTR_445133 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43196544;END=43196563;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7767 chr21 43204147 GANGSTR_445136 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43204147;END=43204158;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|40:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7768 chr21 43207480 GANGSTR_445137 ACACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.99;INFRAME_UP=0.05;INFRAME_DOWN=0.18;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=43207480;END=43207525;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-12,2;DP=58;DSNP=0;DSTUTTER=6;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-12|2:1:0.5:58:0:6:2:29.35|28.65:0|0:8.07:0:47:-0.25:-14|1;-12|12;-4|2;0|4;2|9;3|1:-12|11;-2|1;0|3;2|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7769 chr21 43221313 GANGSTR_445139 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43221313;END=43221324;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7770 chr21 43221415 GANGSTR_445140 CTGCTGCTGCTGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43221415;END=43221429;PERIOD=3;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7771 chr21 43231824 GANGSTR_445141 AAAATAAAATAAAATAAAATAAAATAAAAT . . . INFRAME_PGEOM=0.97;INFRAME_UP=0.04;INFRAME_DOWN=0.22;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=43231824;END=43231853;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=12;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:12:0:30.00|30.00:0|0:.:0:.:0:-5|8;0|16:-5|8;0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7772 chr21 43239815 GANGSTR_445142 GGCCCCCGCCCCC GCCCCCCCCCCCC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=43239816;END=43239827;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=0;DP=44;DSNP=0;DSTUTTER=2;DFLANKINDEL=5;AN=2;REFAC=1;AC=1;HRUN=5;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:44:0:2:5:29.21|14.79:0|0:24.76:-1.7:37:-4.84:-6|1;0|20;1|2;2|2:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7773 chr21 43249054 GANGSTR_445143 TGACTGACTGAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43249054;END=43249065;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7774 chr21 43257197 GANGSTR_445144 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43257197;END=43257208;PERIOD=4;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:0:0:40.00|40.00:0|0:.:0:.:0:0|54:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7775 chr21 43258064 GANGSTR_445145 GTGGTGGTGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43258064;END=43258075;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7776 chr21 43260713 GANGSTR_445146 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43260713;END=43260724;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7777 chr21 43262603 GANGSTR_445147 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43262603;END=43262614;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7778 chr21 43266907 GANGSTR_445151 CTGGCCCCTGGCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43266907;END=43266920;PERIOD=7;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|30:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7779 chr21 43269221 GANGSTR_445152 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43269221;END=43269232;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7780 chr21 43270048 GANGSTR_445153 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43270048;END=43270057;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7781 chr21 43270673 GANGSTR_445154 TAAAAATAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43270673;END=43270684;PERIOD=6;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:26.00|33.00:0|0:.:0:.:0:0|36:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7782 chr21 43273875 GANGSTR_445155 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43273875;END=43273886;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7783 chr21 43275466 GANGSTR_445156 GCAGGCAGGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43275466;END=43275477;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7784 chr21 43277869 GANGSTR_445157 AAAGAAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43277869;END=43277878;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7785 chr21 43285130 GANGSTR_445158 CACTCCCCACTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43285130;END=43285143;PERIOD=7;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:1:2:27.00|27.00:0|0:.:0:.:0:-24|2;0|33:-7|1;0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7786 chr21 43294612 GANGSTR_445160 ATATATATATATATATATATATAT ATATATATATATATATATATATTTTTT,ATATATATATATATATATATATTTTTTT . . INFRAME_PGEOM=0.9;INFRAME_UP=0.06;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.74;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.17;START=43294612;END=43294635;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=3,4;DP=29;DSNP=0;DSTUTTER=4;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:3|4:1:0.5:29:0:4:2:15.54|13.46:0|0:7.85:-0:17:-0.33:-3|1;0|3;1|1;3|3;4|5:1|2;3|5;4|5:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7787 chr21 43297856 GANGSTR_445161 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43297856;END=43297867;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|47:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7788 chr21 43299032 GANGSTR_445162 GCGGGCGGGCGG GCGGCGGGCGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.07;START=43299032;END=43299043;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:0.99:0.49:36:0:0:0:32.95|3.05:0|0:1.87:-7.81:32:-0.33:-1|1;0|24:-1|1;0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7789 chr21 43299107 GANGSTR_445163 GGCGGGCGGGCG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=43299107;END=43299118;PERIOD=4;NSKIP=0;NFILT=0;DP=34;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:34:0:0:0:17.00|17.00:0|0:.:0:.:0:0|14:0|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7790 chr21 43301128 GANGSTR_445164 CCACCACCACCACT CCACCACCACC . . INFRAME_PGEOM=0.94;INFRAME_UP=0.06;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43301128;END=43301139;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-3:1:0.5:50:0:0:1:30.54|19.46:0|0:27.73:-0.9:43:0:-3|14;0|26:-3|14;0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7791 chr21 43301589 GANGSTR_445165 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43301589;END=43301600;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7792 chr21 43302035 GANGSTR_445166 CCGCCCGCCCGCCCGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43302035;END=43302050;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7793 chr21 43302992 GANGSTR_445167 CAAAACAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43302992;END=43303011;PERIOD=5;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:0:38.50|38.50:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7794 chr21 43306140 GANGSTR_445168 ACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43306140;END=43306153;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7795 chr21 43310489 GANGSTR_445169 AGCAGCAGCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43310489;END=43310500;PERIOD=3;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.50|20.50:0|0:.:0:.:0:0|28:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7796 chr21 43313478 GANGSTR_445170 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43313478;END=43313492;PERIOD=5;NSKIP=0;NFILT=0;DP=81;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:81:0:0:0:40.50|40.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7797 chr21 43320386 GANGSTR_445171 AAAATAAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43320386;END=43320405;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7798 chr21 43320810 GANGSTR_445172 CCCACCCACCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43320810;END=43320821;PERIOD=4;NSKIP=0;NFILT=0;DP=34;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:34:0:0:0:17.00|17.00:0|0:.:0:.:0:0|26:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7799 chr21 43321090 GANGSTR_445173 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43321090;END=43321101;PERIOD=4;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:0:38.50|38.50:0|0:.:0:.:0:0|55:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7800 chr21 43321558 GANGSTR_445174 AACACAACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43321558;END=43321567;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:29.44|18.56:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7801 chr21 43322240 GANGSTR_445175 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43322240;END=43322251;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7802 chr21 43326464 GANGSTR_445176 TGTTTTGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43326464;END=43326483;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7803 chr21 43328939 GANGSTR_445178 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43328939;END=43328950;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7804 chr21 43330801 GANGSTR_445179 ACACACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43330801;END=43330816;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:1:0:27.50|27.50:0|0:.:0:.:0:-2|1;0|35:-2|1;0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7805 chr21 43334678 GANGSTR_445180 CAGGCAGGCAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43334678;END=43334689;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7806 chr21 43335882 GANGSTR_445181 TTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43335882;END=43335889;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|54:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7807 chr21 43336774 GANGSTR_445182 ACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.99;INFRAME_UP=0.03;INFRAME_DOWN=0.14;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43336774;END=43336815;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6,-2;DP=66;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-6|-2:1:0.5:66:0:3:0:34.54|31.46:0|0:10.17:-0.13:39:-0.31:-8|4;-6|16;-2|12:-8|3;-6|15;-2|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7808 chr21 43337195 GANGSTR_445183 CTGCTCTGCTCTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43337195;END=43337209;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7809 chr21 43338430 GANGSTR_445184 AGGAAGGAAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43338430;END=43338441;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:34.00|28.00:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7810 chr21 43342259 GANGSTR_445185 TCTTCTTCTTCTTCT TCTTCTTCTTCTTTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.91;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.04;START=43342259;END=43342273;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=1;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=6;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|1:1:0.5:65:0:0:6:37.29|27.71:0|0:61.84:-0.57:53:0:0|26;1|9;2|2:0|18;1|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7811 chr21 43347276 GANGSTR_445186 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=43347276;END=43347287;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:1:33.00|33.00:0|0:.:0:.:0:-1|1;0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7812 chr21 43347575 GANGSTR_445187 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43347575;END=43347586;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7813 chr21 43352524 GANGSTR_445188 GTGGGGTGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=43352524;END=43352533;PERIOD=5;NSKIP=0;NFILT=0;DP=32;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:32:0:0:1:16.00|16.00:0|0:.:0:.:0:0|22:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7814 chr21 43353883 GANGSTR_445189 AGGGGAGGGGAGGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43353883;END=43353897;PERIOD=5;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:20.04|22.96:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7815 chr21 43358277 GANGSTR_445190 TATATATATATATATATA . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43358277;END=43358294;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:2:0:27.00|27.00:0|0:.:0:.:0:-2|2;0|35:-2|2;0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7816 chr21 43361098 GANGSTR_445191 ATAATAATAATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43361098;END=43361118;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7817 chr21 43364777 GANGSTR_445192 TGCCTGCCTGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43364777;END=43364788;PERIOD=4;NSKIP=0;NFILT=0;DP=33;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:33:0:0:0:16.50|16.50:0|0:.:0:.:0:0|26:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7818 chr21 43365769 GANGSTR_445193 GAGGGAGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43365769;END=43365780;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7819 chr21 43375150 GANGSTR_445196 GTGTGTGTGTGT . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43375150;END=43375161;PERIOD=2;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:1:0:19.50|19.50:0|0:.:0:.:0:-2|1;0|31:-2|1;0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7820 chr21 43375993 GANGSTR_445197 ACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43375993;END=43376006;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:1:26.50|26.50:0|0:.:0:.:0:0|40:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7821 chr21 43376658 GANGSTR_445198 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43376658;END=43376669;PERIOD=4;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:0:38.50|38.50:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7822 chr21 43386757 GANGSTR_445199 TCATTCATTCATTCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43386757;END=43386772;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7823 chr21 43394426 GANGSTR_445200 GGGAGGGAGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43394426;END=43394437;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7824 chr21 43406224 GANGSTR_445201 TATATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43406224;END=43406239;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7825 chr21 43407823 GANGSTR_445202 CATGCATGCATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43407823;END=43407834;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|55:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7826 chr21 43412316 GANGSTR_445203 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43412316;END=43412327;PERIOD=2;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|59:0|57:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7827 chr21 43419770 GANGSTR_445204 TCATTCATTCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43419770;END=43419781;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7828 chr21 43423353 GANGSTR_445205 CTTCCTTCCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43423353;END=43423364;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:1:35.00|35.00:0|0:.:0:.:0:0|50:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7829 chr21 43424926 GANGSTR_445206 ACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43424926;END=43424937;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:1:0:25.00|25.00:0|0:.:0:.:0:-2|1;0|40:-2|1;0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7830 chr21 43430548 GANGSTR_445207 GGGCGGGGCG GGGCGGGGC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.1;OUTFRAME_DOWN=0.05;START=43430548;END=43430557;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=28;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-1|-1:1:1:28:0:0:0:14.00|14.00:0|0:5.68:0:.:0:-1|15;0|1:-1|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7831 chr21 43432355 GANGSTR_445208 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43432355;END=43432369;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7832 chr21 43434042 GANGSTR_445209 ACCCACCCACCC ACCCACCCCCCC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=43434042;END=43434053;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=41;DSNP=0;DSTUTTER=5;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:41:0:5:2:25.99|15.01:0|0:14.23:-0.76:35:-5.13:0|28:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7833 chr21 43435008 GANGSTR_445210 TTTGTTTTGTTTTGTTTTGTTTTGT TTTGTTTTGTTTTGTTTTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43435008;END=43435032;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-5;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-5|-5:1:1:65:0:0:0:32.50|32.50:0|0:11.54:0:.:0:-5|39:-5|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7834 chr21 43435919 GANGSTR_445211 TGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43435919;END=43435934;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:58:0:0:1:29.00|29.00:0|0:12.2:0:.:0:-10|1;-7|1;2|38:2|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7835 chr21 43436903 GANGSTR_445212 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43436903;END=43436914;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|49:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7836 chr21 43441440 GANGSTR_445213 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43441440;END=43441454;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7837 chr21 43445076 GANGSTR_445214 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGC TGTGTGTGTGTGTGTGTGTGTGTGCGT . . INFRAME_PGEOM=0.94;INFRAME_UP=0.1;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43445076;END=43445117;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-16;DP=80;DSNP=0;DSTUTTER=3;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-16|-16:1:1:80:0:3:1:40.00|40.00:0|0:18.01:0:.:0:-18|1;-16|41;-14|3:-18|1;-16|38;-14|2:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7838 chr21 43455983 GANGSTR_445216 AATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43455983;END=43455992;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7839 chr21 43462439 GANGSTR_445217 ATTATTATTATTATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43462439;END=43462465;PERIOD=3;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7840 chr21 43462931 GANGSTR_445218 GAGGAGGAGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43462931;END=43462942;PERIOD=3;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|57:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7841 chr21 43464759 GANGSTR_445219 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43464759;END=43464773;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|52:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7842 chr21 43465558 GANGSTR_445220 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43465558;END=43465569;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|35:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7843 chr21 43465780 GANGSTR_445221 CCACCCCACCCCACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43465780;END=43465794;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7844 chr21 43473807 GANGSTR_445223 TTGTTTTGTTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43473807;END=43473821;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7845 chr21 43475517 GANGSTR_445224 GGAGGAGGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43475517;END=43475528;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7846 chr21 43477211 GANGSTR_445225 CAGTCAGTCAGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43477211;END=43477222;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7847 chr21 43478419 GANGSTR_445226 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43478419;END=43478433;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7848 chr21 43479114 GANGSTR_445227 GCTGCTGCTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43479114;END=43479125;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7849 chr21 43480813 GANGSTR_445228 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43480813;END=43480824;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:25.00|32.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7850 chr21 43484654 GANGSTR_445229 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43484654;END=43484665;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7851 chr21 43484975 GANGSTR_445230 TTTCTTTTCTTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43484975;END=43484989;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7852 chr21 43486388 GANGSTR_445231 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43486388;END=43486403;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7853 chr21 43492153 GANGSTR_445232 CAAACAAACAAACAAACAAACAAA CAAACAAACAAACAAACAAACAAACAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43492153;END=43492176;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:73:0:0:0:39.60|33.40:0|0:12.93:-0.55:42:0:0|25;4|15:0|23;4|15:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7854 chr21 43503841 GANGSTR_445234 TGAATGAATGAATGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43503841;END=43503864;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7855 chr21 43509128 GANGSTR_445235 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43509128;END=43509139;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|44:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7856 chr21 43514865 GANGSTR_445237 GTTGGTTGGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43514865;END=43514876;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7857 chr21 43519603 GANGSTR_445238 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43519603;END=43519614;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|27:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7858 chr21 43523628 GANGSTR_445240 ATCAATCAATCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43523628;END=43523639;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7859 chr21 43523767 GANGSTR_445241 CCAGGCCAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43523767;END=43523776;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7860 chr21 43526893 GANGSTR_445242 CACTCACTCACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43526893;END=43526904;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7861 chr21 43535703 GANGSTR_445243 AAGGAAGGAAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43535703;END=43535714;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7862 chr21 43541479 GANGSTR_445244 GTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGT . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43541479;END=43541496;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=59;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:59:0:1:0:28.66|30.34:0|0:12.25:-0.19:42:-0.12:-4|1;-2|21;0|19:-4|1;-2|19;0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7863 chr21 43542021 GANGSTR_445245 GGTGGGTGGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43542021;END=43542032;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7864 chr21 43550332 GANGSTR_445246 GTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.96;INFRAME_UP=0.02;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43550332;END=43550355;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2,6;DP=67;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:2|6:1:0.5:67:0:3:0:29.84|37.16:0|0:22.17:-0.54:44:-0.26:-4|1;0|4;2|16;6|22:0|2;2|16;4|1;6|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7865 chr21 43552984 GANGSTR_445247 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43552984;END=43552995;PERIOD=3;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7866 chr21 43554724 GANGSTR_445248 AATTAATTT AATTAATTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43554724;END=43554731;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:43:0:0:0:18.57|24.43:0|0:60.86:-0.37:40:-0.12:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7867 chr21 43559268 GANGSTR_445249 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43559268;END=43559279;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7868 chr21 43561816 GANGSTR_445250 ACCCACCCACCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43561816;END=43561827;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7869 chr21 43564272 GANGSTR_445251 CCATCTAACCATCTAA CCGTCTAACCATCTAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=43564272;END=43564287;PERIOD=8;NSKIP=0;NFILT=0;BPDIFFS=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:40:0:0:0:20.49|19.51:0|0:65.65:-0:39:-0.28:0|23:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7870 chr21 43573666 GANGSTR_445252 GGCAGGCAGGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43573666;END=43573677;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7871 chr21 43583711 GANGSTR_445253 GGAGGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43583711;END=43583719;PERIOD=3;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:1:2:20.00|20.00:0|0:.:0:.:0:0|35:-6|1;0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7872 chr21 43584094 GANGSTR_445254 CAAAAAACAAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43584094;END=43584107;PERIOD=7;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=6;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|43:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7873 chr21 43598396 GANGSTR_445255 ATGTATGTATGTATGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43598396;END=43598411;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7874 chr21 43598905 GANGSTR_445256 CCATCCATCCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43598905;END=43598916;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|55:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7875 chr21 43599008 GANGSTR_445257 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43599008;END=43599019;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7876 chr21 43604121 GANGSTR_445258 GTGTGGTGTGGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43604121;END=43604135;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:-2|1;0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7877 chr21 43608685 GANGSTR_445259 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43608685;END=43608696;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:28.51|22.49:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7878 chr21 43614482 GANGSTR_445262 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43614482;END=43614497;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7879 chr21 43616195 GANGSTR_445263 GAGGGAGAGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43616195;END=43616206;PERIOD=6;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:1:36.50|36.50:0|0:.:0:.:0:0|57:0|57:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7880 chr21 43617189 GANGSTR_445264 AACAAAACAAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43617189;END=43617203;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7881 chr21 43626014 GANGSTR_445265 ATTTTCATTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43626014;END=43626025;PERIOD=6;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|42:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7882 chr21 43631566 GANGSTR_445266 TCCTTCCTTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43631566;END=43631577;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7883 chr21 43632014 GANGSTR_445267 AAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43632014;END=43632033;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7884 chr21 43639163 GANGSTR_445268 GCCCGCCCGCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43639163;END=43639174;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:2:21.50|21.50:0|0:.:0:.:0:0|30:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7885 chr21 43639333 GANGSTR_445269 CCGCCGCCGCCGCCGCCGCCGCCGCCGCCG CCGCCGCCGCCGCCGCCGCCGCCG . . INFRAME_PGEOM=0.91;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=43639333;END=43639362;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-6:1:0.5:42:0:0:0:22.91|19.09:0|0:20.31:-0.24:28:-0.6:-6|9;0|13:-6|9;0|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7886 chr21 43647950 GANGSTR_445270 GAGAGAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43647950;END=43647965;PERIOD=2;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|25:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7887 chr21 43649850 GANGSTR_445271 AAAGAAAGAAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43649850;END=43649869;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:3:30.50|30.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7888 chr21 43654141 GANGSTR_445272 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43654141;END=43654152;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7889 chr21 43657720 GANGSTR_445273 AATGAATGAATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=43657720;END=43657731;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:-1|1;0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7890 chr21 43659362 GANGSTR_445274 AATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43659362;END=43659367;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|57:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7891 chr21 43662614 GANGSTR_445275 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43662614;END=43662623;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7892 chr21 43668465 GANGSTR_445276 GAAGTGAAGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43668465;END=43668474;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7893 chr21 43671212 GANGSTR_445277 CGGTCGGTCGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43671212;END=43671223;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7894 chr21 43678061 GANGSTR_445278 TCCATCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43678061;END=43678068;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7895 chr21 43679629 GANGSTR_445279 GGCTGGCTGGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43679629;END=43679640;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7896 chr21 43680806 GANGSTR_445280 AGGAAGGAAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43680806;END=43680817;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7897 chr21 43682013 GANGSTR_445281 CCCAGCCCAGCCCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43682013;END=43682027;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7898 chr21 43682735 GANGSTR_445282 GGAGGGAGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43682735;END=43682746;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7899 chr21 43688717 GANGSTR_445283 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43688717;END=43688728;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7900 chr21 43690703 GANGSTR_445284 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43690703;END=43690714;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7901 chr21 43692006 GANGSTR_445285 AACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43692006;END=43692020;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7902 chr21 43693361 GANGSTR_445286 GGAGGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43693361;END=43693369;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7903 chr21 43696361 GANGSTR_445287 ACAACAACAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43696361;END=43696372;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|41:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7904 chr21 43700626 GANGSTR_445288 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43700626;END=43700637;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:37.00|28.00:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7905 chr21 43713583 GANGSTR_445289 CACACCACACCACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43713583;END=43713597;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:1:23.00|23.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7906 chr21 43714948 GANGSTR_445290 ACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.05;START=43714948;END=43714959;PERIOD=2;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:1:1:19.50|19.50:0|0:.:0:.:0:-1|1;0|30;2|1:0|29;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7907 chr21 43717391 GANGSTR_445291 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43717391;END=43717406;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7908 chr21 43725476 GANGSTR_445292 TTTTGTTTTGTTTTGTTTTGTTTTGTTTTG TTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTG . . INFRAME_PGEOM=0.97;INFRAME_UP=0.05;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.02;START=43725476;END=43725505;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=5;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|5:1:0.5:75:0:0:0:31.37|43.63:0|0:8.36:-1.27:46:-0.12:-16|1;0|16;1|1;5|22:0|16;5|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7909 chr21 43732719 GANGSTR_445293 ACCCCCACCCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=43732719;END=43732730;PERIOD=6;NSKIP=0;NFILT=0;DP=30;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:30:0:0:1:15.00|15.00:0|0:.:0:.:0:0|19:0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7910 chr21 43733472 GANGSTR_445294 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43733472;END=43733483;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7911 chr21 43740894 GANGSTR_445295 TTCTTCTTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43740894;END=43740905;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7912 chr21 43741471 GANGSTR_445296 CCTGGCCTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43741471;END=43741480;PERIOD=5;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:2:20.50|20.50:0|0:.:0:.:0:0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7913 chr21 43754958 GANGSTR_445297 TGTATGTATGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43754958;END=43754969;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:2:34.50|34.50:0|0:.:0:.:0:0|52:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7914 chr21 43763610 GANGSTR_445299 AAGGGAAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43763610;END=43763619;PERIOD=5;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7915 chr21 43765496 GANGSTR_445300 ATAATAATAATAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43765496;END=43765510;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7916 chr21 43768543 GANGSTR_445302 TATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43768543;END=43768556;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|39:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7917 chr21 43773522 GANGSTR_445303 TCCTTCCTTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43773522;END=43773533;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|30:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7918 chr21 43779965 GANGSTR_445304 CAGACAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43779965;END=43779972;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7919 chr21 43781659 GANGSTR_445305 GGAGGAGGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43781659;END=43781670;PERIOD=3;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7920 chr21 43787529 GANGSTR_445306 CTCCCTCCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43787529;END=43787540;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:27.50|23.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7921 chr21 43788483 GANGSTR_445307 GGAAGGAAGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43788483;END=43788494;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7922 chr21 43789234 GANGSTR_445308 TATGTATGTATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43789234;END=43789245;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7923 chr21 43797067 GANGSTR_445310 GAGGAGGAGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43797067;END=43797078;PERIOD=3;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|27:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7924 chr21 43798822 GANGSTR_445311 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43798822;END=43798836;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7925 chr21 43798980 GANGSTR_445312 TTTGTTTGTTTGTTTGTTTGTTTGTTTG TTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTG . . INFRAME_PGEOM=0.91;INFRAME_UP=0.08;INFRAME_DOWN=0.14;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=43798980;END=43799007;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=51;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:51:0:1:0:25.38|25.62:0|0:2.68:0:18:0:-4|1;0|8;4|6:-4|1;0|7;4|6:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7926 chr21 43806887 GANGSTR_445313 TTATTTATTTATTTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43806887;END=43806914;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7927 chr21 43807481 GANGSTR_445314 GTGTGTGTGTGTGTGTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.09;OUTFRAME_DOWN=0.04;START=43807481;END=43807506;PERIOD=2;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:2:1:22.00|22.00:0|0:.:0:.:0:-6|1;0|17;1|1:-6|1;0|15;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7928 chr21 43811308 GANGSTR_445315 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43811308;END=43811319;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7929 chr21 43812670 GANGSTR_445316 ATGAATGAATGA ATGAATGAATGAATGA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43812670;END=43812681;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:56:0:0:0:28.00|28.00:0|0:11.32:0:.:0:-14|1;-4|1;4|34:4|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7930 chr21 43822636 GANGSTR_445317 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43822636;END=43822647;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7931 chr21 43837614 GANGSTR_445319 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43837614;END=43837625;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7932 chr21 43837932 GANGSTR_445320 GATGGATGGATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43837932;END=43837943;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|53:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7933 chr21 43841618 GANGSTR_445321 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43841618;END=43841629;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7934 chr21 43841964 GANGSTR_445322 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43841964;END=43841978;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7935 chr21 43863679 GANGSTR_445323 CTGCTGCTGCTGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43863679;END=43863693;PERIOD=3;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|25:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7936 chr21 43863880 GANGSTR_445324 CTGCTGCTGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43863880;END=43863891;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|33:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7937 chr21 43871330 GANGSTR_445325 ACCCTAACCCTAACCCTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43871330;END=43871347;PERIOD=6;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|35:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7938 chr21 43872089 GANGSTR_445326 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43872089;END=43872104;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7939 chr21 43878330 GANGSTR_445327 TATTATTATTATTATTATTATTATTATTATTAT TATTATTATTATTATTATTATTAT,TATTATTATTATTATTATTATTATTATTATTATTAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=43878330;END=43878362;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-9,3;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-9|3:1:0.5:41:0:0:0:23.96|17.04:0|0:4.68:-0.78:19:-0:-9|13;3|4:-9|13;3|3:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7940 chr21 43883337 GANGSTR_445328 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43883337;END=43883348;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7941 chr21 43886712 GANGSTR_445329 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43886712;END=43886723;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:2:28.50|28.50:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7942 chr21 43887846 GANGSTR_445330 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43887846;END=43887857;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7943 chr21 43892955 GANGSTR_445331 TTCTTCTTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43892955;END=43892966;PERIOD=3;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7944 chr21 43895260 GANGSTR_445332 TCAGTCAGTCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43895260;END=43895271;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7945 chr21 43899837 GANGSTR_445333 ACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.99;INFRAME_UP=0.05;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43899837;END=43899870;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=65;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:65:0:1:0:30.86|34.14:0|0:7.92:-0.13:37:-0.13:-2|1;0|16;2|17:-2|1;0|14;2|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7946 chr21 43901315 GANGSTR_445334 ATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=43901315;END=43901328;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:1:1:25.00|25.00:0|0:.:0:.:0:-1|1;0|36:-4|1;0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7947 chr21 43902192 GANGSTR_445335 TTGTTTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43902192;END=43902207;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7948 chr21 43904100 GANGSTR_445336 GTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.98;INFRAME_UP=0.05;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43904100;END=43904117;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:51:0:0:0:25.14|25.86:0|0:11.84:-0:37:-0.29:0|16;2|19:0|15;2|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7949 chr21 43911565 GANGSTR_445337 GTGTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43911565;END=43911578;PERIOD=2;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|53:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7950 chr21 43911743 GANGSTR_445338 AAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43911743;END=43911757;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:-25|1;0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7951 chr21 43914177 GANGSTR_445339 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43914177;END=43914188;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7952 chr21 43933990 GANGSTR_445340 GGCCGGGCCG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43933990;END=43933999;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7953 chr21 43934996 GANGSTR_445341 TGCCTGCCTGCCTGCCTGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43934996;END=43935015;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7954 chr21 43935395 GANGSTR_445342 AAAGAAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43935395;END=43935404;PERIOD=5;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7955 chr21 43943905 GANGSTR_445343 TTGGTTTGGTTTGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43943905;END=43943919;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7956 chr21 43948326 GANGSTR_445344 GATGATGATGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43948326;END=43948337;PERIOD=3;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|52:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7957 chr21 43949673 GANGSTR_445345 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43949673;END=43949682;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:20.01|26.99:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7958 chr21 43954037 GANGSTR_445347 GGTGGGTGGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43954037;END=43954048;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7959 chr21 43959142 GANGSTR_445348 CCAGCCAGCCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43959142;END=43959153;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7960 chr21 43963036 GANGSTR_445349 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=43963036;END=43963047;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7961 chr21 43971915 GANGSTR_445350 TTTGTTTTGTTTTGTTTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43971915;END=43971944;PERIOD=5;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:0:39.50|39.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7962 chr21 43972686 GANGSTR_445351 TGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43972686;END=43972693;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7963 chr21 43974454 GANGSTR_445352 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43974454;END=43974465;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7964 chr21 43978565 GANGSTR_445353 TTCTTTCTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43978565;END=43978576;PERIOD=4;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:0:0:40.00|40.00:0|0:.:0:.:0:0|60:0|57:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7965 chr21 43991211 GANGSTR_445356 CCACCACCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43991211;END=43991219;PERIOD=3;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:1:21.50|21.50:0|0:.:0:.:0:0|36:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7966 chr21 43991794 GANGSTR_445357 CACCCCTCCTCCTCCT CCCCCCTCCTCCTCCT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43991798;END=43991809;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:52:0:0:0:41.41|10.59:0|0:3.67:-5.03:49:-2.09:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7967 chr21 43992569 GANGSTR_445358 CTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43992569;END=43992580;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.50|32.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7968 chr21 43999999 GANGSTR_445361 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=43999999;END=44000010;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:26.48|21.52:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7969 chr21 44000201 GANGSTR_445362 CTCCCTCCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44000201;END=44000212;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7970 chr21 44006130 GANGSTR_445363 TATTATTATTATTTTT TATTATTATTATTA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.96;OUTFRAME_UP=0.08;OUTFRAME_DOWN=0.08;START=44006130;END=44006141;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=1;AC=1;HRUN=5;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:45:0:0:3:30.00|15.00:0|0:83.24:-1.45:45:-0.29:-2|9;-1|2;0|12:-2|9;0|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7971 chr21 44007375 GANGSTR_445364 GGGAAGGGAAGGGAAGGGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.06;START=44007375;END=44007394;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:1:23.00|23.00:0|0:.:0:.:0:-1|1;0|28:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7972 chr21 44010833 GANGSTR_445365 GCAGCAGCAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44010833;END=44010844;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7973 chr21 44012346 GANGSTR_445366 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44012346;END=44012357;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|33:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7974 chr21 44016576 GANGSTR_445367 AGCAAGCAAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44016576;END=44016587;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7975 chr21 44021627 GANGSTR_445368 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44021627;END=44021638;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:2:22.00|22.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7976 chr21 44023154 GANGSTR_445369 AGAGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44023154;END=44023167;PERIOD=2;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:1:33.00|33.00:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7977 chr21 44032008 GANGSTR_445370 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44032008;END=44032017;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7978 chr21 44035366 GANGSTR_445371 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44035366;END=44035377;PERIOD=2;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:5:33.50|33.50:0|0:.:0:.:0:-4|4;0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7979 chr21 44037870 GANGSTR_445372 CCTGCCCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44037870;END=44037879;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:1:0:22.00|22.00:0|0:.:0:.:0:-13|1;0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7980 chr21 44038637 GANGSTR_445373 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44038637;END=44038648;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7981 chr21 44039128 GANGSTR_445374 ATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44039128;END=44039139;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|52:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7982 chr21 44044138 GANGSTR_445375 TGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44044138;END=44044145;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7983 chr21 44054510 GANGSTR_445376 CTGCCTGCCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44054510;END=44054521;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7984 chr21 44054640 GANGSTR_445377 CATACATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44054640;END=44054647;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7985 chr21 44054726 GANGSTR_445378 CACCCACCCACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44054726;END=44054737;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7986 chr21 44054935 GANGSTR_445379 TCCATCCATCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44054935;END=44054946;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7987 chr21 44058862 GANGSTR_445380 GGCTGGCTGGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44058862;END=44058873;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7988 chr21 44060852 GANGSTR_445381 GGGGAGGGGAGGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44060852;END=44060866;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7989 chr21 44068264 GANGSTR_445382 ACAACAACAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44068264;END=44068275;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7990 chr21 44071393 GANGSTR_445383 CTCCCTCCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44071393;END=44071404;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7991 chr21 44074179 GANGSTR_445385 TGGGGGGTGGGGGGTGGGGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=44074179;END=44074199;PERIOD=7;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=6;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:1:21.50|21.50:0|0:.:0:.:0:0|20;2|1:0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7992 chr21 44075051 GANGSTR_445386 GCTGGGCAGCTGGGCAGCTGGGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44075051;END=44075074;PERIOD=8;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|30:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7993 chr21 44077229 GANGSTR_445387 GGCTTTGTGGGCTTTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44077229;END=44077246;PERIOD=9;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|25:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7994 chr21 44079632 GANGSTR_445388 CAGGGCAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44079632;END=44079641;PERIOD=5;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7995 chr21 44082268 GANGSTR_445389 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44082268;END=44082279;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7996 chr21 44084778 GANGSTR_445390 AGGGAGGGAGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44084778;END=44084793;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7997 chr21 44091404 GANGSTR_445393 TGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.02;START=44091404;END=44091418;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|44;1|1:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7998 chr21 44093107 GANGSTR_445394 AGGAGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44093107;END=44093118;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
7999 chr21 44094610 GANGSTR_445395 CCCTCCCTCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44094610;END=44094621;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8000 chr21 44106926 GANGSTR_445396 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44106926;END=44106941;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8001 chr21 44107433 GANGSTR_445397 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44107433;END=44107444;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8002 chr21 44111266 GANGSTR_445398 TCACCATCACCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44111266;END=44111277;PERIOD=6;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8003 chr21 44111735 GANGSTR_445399 CATCATCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44111735;END=44111743;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8004 chr21 44115776 GANGSTR_445400 CCTCCTCCTCCTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44115776;END=44115790;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8005 chr21 44116705 GANGSTR_445401 AGGAAGGAAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44116705;END=44116716;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8006 chr21 44118137 GANGSTR_445402 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44118137;END=44118148;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8007 chr21 44121556 GANGSTR_445404 AGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44121556;END=44121567;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:4:28.50|28.50:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8008 chr21 44122254 GANGSTR_445405 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44122254;END=44122265;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8009 chr21 44126182 GANGSTR_445406 GGCTGGCTGGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44126182;END=44126193;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:-23|1;0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8010 chr21 44128653 GANGSTR_445407 GTTTTGTTTTGTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44128653;END=44128667;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8011 chr21 44129565 GANGSTR_445408 AAATTAAATTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44129565;END=44129579;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8012 chr21 44140605 GANGSTR_445409 AATAAATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44140605;END=44140620;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.50|25.50:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8013 chr21 44147437 GANGSTR_445411 TGTTTGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44147437;END=44147452;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8014 chr21 44147883 GANGSTR_445412 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44147883;END=44147894;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8015 chr21 44149632 GANGSTR_445413 TTCCTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44149632;END=44149639;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8016 chr21 44151040 GANGSTR_445414 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44151040;END=44151051;PERIOD=4;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:0:19.50|19.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8017 chr21 44153024 GANGSTR_445415 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44153024;END=44153038;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8018 chr21 44157576 GANGSTR_445416 TTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44157576;END=44157584;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8019 chr21 44158802 GANGSTR_445417 TGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44158802;END=44158816;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8020 chr21 44167777 GANGSTR_445419 GGGCAGGGGCAGGGGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44167777;END=44167794;PERIOD=6;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|32:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8021 chr21 44170250 GANGSTR_445420 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44170250;END=44170265;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8022 chr21 44170859 GANGSTR_445421 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.02;START=44170859;END=44170870;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:31.00|27.00:0|0:.:0:.:0:0|44;1|1:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8023 chr21 44186442 GANGSTR_445423 AGAGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44186442;END=44186455;PERIOD=2;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|30:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8024 chr21 44188235 GANGSTR_445424 AGCAGCAGCAGCAGGC AGCAGCAGCAGCAGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.94;OUTFRAME_UP=0.09;OUTFRAME_DOWN=0.03;START=44188235;END=44188246;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-1|-1:1:1:44:0:0:0:22.00|22.00:0|0:10.23:0:.:0:-1|26;0|2:-1|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8025 chr21 44193920 GANGSTR_445425 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44193920;END=44193931;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8026 chr21 44199977 GANGSTR_445426 CACACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44199977;END=44199990;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:-2|1;0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8027 chr21 44200691 GANGSTR_445427 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44200691;END=44200702;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8028 chr21 44204382 GANGSTR_445428 TCCCCTCCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44204382;END=44204391;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8029 chr21 44210266 GANGSTR_445430 AATTAAATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44210266;END=44210275;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|55:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8030 chr21 44212475 GANGSTR_445431 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44212475;END=44212486;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:34.50|24.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8031 chr21 44220511 GANGSTR_445432 TGGTGGTGGTGGTGGTGGTGGTGGTGG TGGTGGTGGTGGTGGTGGTGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44220511;END=44220537;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-6|-6:1:1:52:0:0:0:26.00|26.00:0|0:10.21:0:.:0:-6|33:-6|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8032 chr21 44237138 GANGSTR_445433 CCTCCTCCTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44237138;END=44237149;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8033 chr21 44239971 GANGSTR_445434 AATAATAATAATAATAAT AAAAATAATAATAATAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.05;START=44239971;END=44239988;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:52:0:0:3:26.00|26.00:0|0:13.19:0:.:0:-1|1;0|34:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8034 chr21 44241520 GANGSTR_445435 ACAGACAGACAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44241520;END=44241531;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8035 chr21 44247556 GANGSTR_445436 ATAGATAGATAGATAGATAG ATAGATAGATAGATAGATAGATAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44247556;END=44247575;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:65:0:0:0:32.50|32.50:0|0:13.4:0:.:0:-2|1;0|2;4|41:4|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8036 chr21 44248805 GANGSTR_445437 TGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44248805;END=44248826;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=50;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:50:0:1:0:25.00|25.00:0|0:10.95:0:.:0:-2|35:-2|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8037 chr21 44250138 GANGSTR_445438 TGAGTGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44250138;END=44250145;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|53:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8038 chr21 44250736 GANGSTR_445439 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44250736;END=44250750;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8039 chr21 44255031 GANGSTR_445440 CTCCACTCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=44255031;END=44255040;PERIOD=5;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:0:19.50|19.50:0|0:.:0:.:0:0|22:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8040 chr21 44260641 GANGSTR_445441 TGGTATGGTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44260641;END=44260650;PERIOD=5;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|57:0|57:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8041 chr21 44268454 GANGSTR_445442 CACACACACACA CACACACACA . . INFRAME_PGEOM=0.98;INFRAME_UP=0.04;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44268454;END=44268465;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:41:0:0:1:20.75|20.25:0|0:11.38:0:36:0:-2|19;0|14:-2|18;0|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8042 chr21 44272209 GANGSTR_445444 CCTGCCCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44272209;END=44272218;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8043 chr21 44274102 GANGSTR_445445 CAGGCAGGCAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44274102;END=44274113;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8044 chr21 44278816 GANGSTR_445446 CCTGACCCTGACCCTGAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44278816;END=44278833;PERIOD=6;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|29:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8045 chr21 44282763 GANGSTR_445447 CACCCCTGCCTGCCTG CCCCCCTGCCTGCCTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44282767;END=44282778;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:52:0:0:0:34.47|17.53:0|0:21.27:-1.86:43:-4.72:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8046 chr21 44285855 GANGSTR_445448 GGGTCTCGGGTCTCGGGTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=44285855;END=44285875;PERIOD=7;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:1:26.50|26.50:0|0:.:0:.:0:0|23:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8047 chr21 44289197 GANGSTR_445449 GAGGAGGAGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44289197;END=44289208;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8048 chr21 44290466 GANGSTR_445450 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44290466;END=44290477;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8049 chr21 44301509 GANGSTR_445451 GTTTGTTTGTTTGTTTGTTT GTTTGTTTGTTTGTTT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.05;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44301509;END=44301528;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:63:0:0:2:34.51|28.49:0|0:14.6:-0.42:47:-0.41:-4|18;0|22:-4|18;0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8050 chr21 44309166 GANGSTR_445453 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44309166;END=44309177;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:1:0:27.50|27.50:0|0:.:0:.:0:-2|1;0|46:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8051 chr21 44311529 GANGSTR_445454 TCTTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44311529;END=44311538;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8052 chr21 44313705 GANGSTR_445455 CCGCCGCCGCCG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44313705;END=44313716;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:2:27.50|27.50:0|0:.:0:.:0:0|44:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8053 chr21 44314309 GANGSTR_445456 AATAAATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=44314309;END=44314324;PERIOD=4;NSKIP=0;NFILT=0;DP=31;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:31:0:0:0:15.50|15.50:0|0:.:0:.:0:0|21:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8054 chr21 44317517 GANGSTR_445457 TTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGT TTTGTTTTGTTTTGTTTTGTTTTGTTTTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44317517;END=44317551;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-5;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-5|-5:1:1:55:0:0:0:27.50|27.50:0|0:8.24:0:.:0:-5|29:-5|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8055 chr21 44320614 GANGSTR_445458 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44320614;END=44320625;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8056 chr21 44322333 GANGSTR_445459 ATAAATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44322333;END=44322348;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8057 chr21 44325615 GANGSTR_445460 TTTGTTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44325615;END=44325638;PERIOD=4;NSKIP=0;NFILT=0;DP=86;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:86:0:0:1:43.00|43.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8058 chr21 44333182 GANGSTR_445461 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44333182;END=44333193;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:27.48|31.52:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8059 chr21 44335131 GANGSTR_445462 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44335131;END=44335146;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:38.01|26.99:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8060 chr21 44336165 GANGSTR_445463 GTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44336165;END=44336176;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8061 chr21 44337169 GANGSTR_445464 GAGGAGGAGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44337169;END=44337180;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8062 chr21 44344190 GANGSTR_445465 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44344190;END=44344201;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8063 chr21 44345931 GANGSTR_445466 GAGGAGGAGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44345931;END=44345942;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:31.56|26.44:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8064 chr21 44348958 GANGSTR_445468 TTTCTTTCTTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44348958;END=44348977;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8065 chr21 44350628 GANGSTR_445469 TATATATATATATA . . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44350628;END=44350641;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:1:0:31.50|31.50:0|0:.:0:.:0:0|38;2|1:0|36;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8066 chr21 44358241 GANGSTR_445470 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44358241;END=44358252;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8067 chr21 44360106 GANGSTR_445471 CGGAATAGGAATA CAGAATAGGAATA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44360107;END=44360118;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:52:0:0:0:31.99|20.01:0|0:59.36:-0.98:46:-0.26:0|33:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8068 chr21 44361824 GANGSTR_445472 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44361824;END=44361835;PERIOD=2;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8069 chr21 44362713 GANGSTR_445473 CCCTTCCCTTCCCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=44362713;END=44362727;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:25.00|30.00:0|0:.:0:.:0:-1|1;0|40:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8070 chr21 44377249 GANGSTR_445474 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44377249;END=44377264;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8071 chr21 44379276 GANGSTR_445476 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44379276;END=44379287;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8072 chr21 44379514 GANGSTR_445477 ATTATTATTATTATTATTATTATTCTTA ATTATTATTATTATTATTATTTTTTTT,ATTATTATTATTATTATTATTATTTTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.98;OUTFRAME_UP=0.13;OUTFRAME_DOWN=0.08;START=44379514;END=44379537;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-1,0;DP=62;DSNP=0;DSTUTTER=1;DFLANKINDEL=4;AN=2;REFAC=0;AC=1,1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-1|0:1:0.5:62:0:1:4:27.60|34.40:0|0:61.97:-0.32:50:0:-4|3;-2|1;-1|11;0|20;1|1:-1|12;0|18;3|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8073 chr21 44379975 GANGSTR_445478 AGGAGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44379975;END=44379986;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8074 chr21 44380867 GANGSTR_445479 TTTGTTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44380867;END=44380890;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8075 chr21 44386712 GANGSTR_445482 TTTTGTTTTGTTTTGTTTTGTTTTG TTTTGGTTTGTTTTGTTTTGTTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=44386712;END=44386736;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:55:0:0:0:26.95|28.05:0|0:79.93:0:49:-0.25:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8076 chr21 44392656 GANGSTR_445483 ATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44392656;END=44392671;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8077 chr21 44395078 GANGSTR_445484 CGCCGCCGCCGCCGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=44395078;END=44395092;PERIOD=3;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:3:21.00|21.00:0|0:.:0:.:0:0|24:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8078 chr21 44398125 GANGSTR_445485 TCCCTCCCTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44398125;END=44398136;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|47:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8079 chr21 44403857 GANGSTR_445486 TTTAATTTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44403857;END=44403866;PERIOD=5;NSKIP=0;NFILT=0;DP=86;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:86:0:0:0:43.00|43.00:0|0:.:0:.:0:0|58:0|58:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8080 chr21 44405439 GANGSTR_445487 TTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44405439;END=44405458;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8081 chr21 44407130 GANGSTR_445488 ATTACATTACAG ATTACATTACAT . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44407130;END=44407139;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=46;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:46:0:1:0:23.00|23.00:0|0:13.11:0:.:0:-5|1;0|35:-5|1;0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8082 chr21 44410375 GANGSTR_445491 ATAAATAAATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44410375;END=44410394;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:30.98|41.02:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8083 chr21 44411976 GANGSTR_445492 TTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=44411976;END=44411991;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|23:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8084 chr21 44428172 GANGSTR_445494 CACACACACACACACACACACACACACACACACACA CTCACACACACACACACACACACACACACACA,CTCTCACACACACACACACACACACACACACACACACACACACACACA . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=44428172;END=44428207;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4,12;DP=65;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|12:1:0.5:65:0:3:0:32.51|32.49:0|0:151.69:0:44:-0.26:-37|1;-6|1;-4|17;6|1;8|1;10|1;12|6:-6|1;-4|15;8|1;10|1;12|5:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8085 chr21 44430522 GANGSTR_445495 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44430522;END=44430533;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8086 chr21 44430664 GANGSTR_445496 AAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44430664;END=44430678;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8087 chr21 44430982 GANGSTR_445497 AAAATAAAATAAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44430982;END=44431006;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8088 chr21 44432680 GANGSTR_445498 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44432680;END=44432694;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:1:1:33.00|33.00:0|0:.:0:.:0:-30|1;0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8089 chr21 44440416 GANGSTR_445501 CTTCCTTCCTTCCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44440416;END=44440431;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|55:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8090 chr21 44442326 GANGSTR_445502 CCTCCTCCTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44442326;END=44442337;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8091 chr21 44459438 GANGSTR_445505 GAGCAGAGCAGAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44459438;END=44459452;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:31.57|26.43:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8092 chr21 44460702 GANGSTR_445506 CCACCACCACCACCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44460702;END=44460716;PERIOD=3;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:1:1:24.00|24.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8093 chr21 44466329 GANGSTR_445507 GCTGGCTGGCTGGCTGGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44466329;END=44466348;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8094 chr21 44467879 GANGSTR_445508 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=44467879;END=44467890;PERIOD=2;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|24:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8095 chr21 44471198 GANGSTR_445510 AGACAGACAGAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44471198;END=44471209;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8096 chr21 44471367 GANGSTR_445511 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44471367;END=44471378;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8097 chr21 44486018 GANGSTR_445512 AGGAGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44486018;END=44486029;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8098 chr21 44490673 GANGSTR_445513 TTCTTTCTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44490673;END=44490684;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8099 chr21 44491735 GANGSTR_445514 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44491735;END=44491746;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8100 chr21 44491835 GANGSTR_445515 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44491835;END=44491846;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8101 chr21 44492653 GANGSTR_445516 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44492653;END=44492664;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|43:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8102 chr21 44496277 GANGSTR_445517 GCCCGCCCGCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=44496277;END=44496288;PERIOD=4;NSKIP=0;NFILT=0;DP=23;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:23:0:0:1:11.50|11.50:0|0:.:0:.:0:0|15:0|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8103 chr21 44497976 GANGSTR_445518 CACACACACACACACACACACACACACACACACA CACACACACACACACACACACACACACACACA . . INFRAME_PGEOM=0.98;INFRAME_UP=0.03;INFRAME_DOWN=0.13;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44497976;END=44498009;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=74;DSNP=0;DSTUTTER=7;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:74:0:7:1:37.00|37.00:0|0:8.9:0:.:0:-4|6;-2|30;10|1:-4|6;-2|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8104 chr21 44498067 GANGSTR_445519 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44498067;END=44498081;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8105 chr21 44500939 GANGSTR_445522 CACTCACTCACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44500939;END=44500950;PERIOD=4;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8106 chr21 44502425 GANGSTR_445523 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44502425;END=44502436;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8107 chr21 44505802 GANGSTR_445524 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44505802;END=44505816;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8108 chr21 44507743 GANGSTR_445525 CTCCTCCTCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44507743;END=44507754;PERIOD=3;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|49:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8109 chr21 44512309 GANGSTR_445526 GAGCAGAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44512309;END=44512318;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8110 chr21 44513285 GANGSTR_445527 CCGCCACCGCCACCGCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44513285;END=44513302;PERIOD=6;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8111 chr21 44514250 GANGSTR_445528 TTCTTCTTCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44514250;END=44514261;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8112 chr21 44518941 GANGSTR_445529 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44518941;END=44518952;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8113 chr21 44531319 GANGSTR_445531 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44531319;END=44531330;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8114 chr21 44532098 GANGSTR_445532 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44532098;END=44532109;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8115 chr21 44552356 GANGSTR_445535 AAGAAGAAGAAGAAGAAG AAAGAAGAAGAAGAAGAAGAAG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.08;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.93;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.04;START=44552356;END=44552373;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=4;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=5;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:54:0:1:5:25.37|28.63:0|0:41.48:-0.19:42:0:0|18;1|2;3|3;4|12;5|2:0|14;1|1;4|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8116 chr21 44554630 GANGSTR_445536 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44554630;END=44554641;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8117 chr21 44557414 GANGSTR_445537 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44557414;END=44557425;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|43:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8118 chr21 44560677 GANGSTR_445538 ATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44560677;END=44560684;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8119 chr21 44562446 GANGSTR_445539 GGCAGGGCAGGGCAGGGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44562446;END=44562465;PERIOD=5;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8120 chr21 44570257 GANGSTR_445540 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44570257;END=44570276;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8121 chr21 44571407 GANGSTR_445541 CATCCATCCATCCATCCATCCATCCATCCATCCATC CATCCATCCATCCATCCATCCATCCATC,CATCCATCCATCCATCCATCCATCCATCCATCCATCCATC . . INFRAME_PGEOM=0.91;INFRAME_UP=0.04;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44571407;END=44571442;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-8,4;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-8|4:1:0.5:65:0:0:0:33.52|31.48:0|0:20.85:-0.06:40:-0.12:-27|1;-8|19;0|3;2|1;4|9:-8|19;4|9:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8122 chr21 44575548 GANGSTR_445542 TCCATCCATCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44575548;END=44575559;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8123 chr21 44578519 GANGSTR_445543 CCCTCCCTCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44578519;END=44578530;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8124 chr21 44580587 GANGSTR_445544 CACACACACACA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44580587;END=44580598;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=1;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:1:3:25.00|25.00:0|0:.:0:.:0:-2|1;0|40:-2|1;0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8125 chr21 44587945 GANGSTR_445545 AATAATAATAATAATAATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44587945;END=44587974;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|25:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8126 chr21 44588134 GANGSTR_445546 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=44588134;END=44588145;PERIOD=4;NSKIP=0;NFILT=0;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:36:0:0:0:18.00|18.00:0|0:.:0:.:0:0|23:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8127 chr21 44590226 GANGSTR_445547 CCAGCCAGCCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44590226;END=44590237;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8128 chr21 44590312 GANGSTR_445548 AGCCAGCCAGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44590312;END=44590323;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:2:27.00|27.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8129 chr21 44597910 GANGSTR_445549 CACACACACACACA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44597910;END=44597923;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:1:0:31.50|31.50:0|0:.:0:.:0:-2|1;0|44:-2|1;0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8130 chr21 44605284 GANGSTR_445550 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44605284;END=44605299;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8131 chr21 44608045 GANGSTR_445551 ACATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44608045;END=44608052;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8132 chr21 44609903 GANGSTR_445552 TCATTCATTCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44609903;END=44609914;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8133 chr21 44614241 GANGSTR_445553 TCCCTCCCTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44614241;END=44614252;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8134 chr21 44616429 GANGSTR_445554 TCTTCTTCTTTC TCTTCTTCTTTCT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.92;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.06;START=44616429;END=44616437;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=1;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:1|1:1:1:56:0:0:4:28.00|28.00:0|0:5.58:0:.:0:-1|1;0|13;1|27;2|1:1|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8135 chr21 44617342 GANGSTR_445555 TCTGTTTCTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44617342;END=44617353;PERIOD=6;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:1:1:27.50|27.50:0|0:.:0:.:0:0|34:-12|1;0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8136 chr21 44623873 GANGSTR_445556 CTGCCTGCCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44623873;END=44623884;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8137 chr21 44626301 GANGSTR_445557 AGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44626301;END=44626312;PERIOD=2;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|29:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8138 chr21 44627371 GANGSTR_445558 TCTCTCTCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44627371;END=44627390;PERIOD=2;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:1:0:24.00|24.00:0|0:.:0:.:0:0|29:-2|1;0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8139 chr21 44629492 GANGSTR_445559 TTATTTTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44629492;END=44629506;PERIOD=5;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8140 chr21 44631797 GANGSTR_445560 AGAGAGAGAGAG . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44631797;END=44631808;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:1:0:30.00|30.00:0|0:.:0:.:0:0|45;2|1:0|43;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8141 chr21 44684833 GANGSTR_445561 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44684833;END=44684844;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8142 chr21 44685170 GANGSTR_445562 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44685170;END=44685184;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|43:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8143 chr21 44689064 GANGSTR_445563 TTCATTCATTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44689064;END=44689083;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|41:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8144 chr21 44694269 GANGSTR_445564 CTCCCCTCCCCTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44694269;END=44694283;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8145 chr21 44706588 GANGSTR_445568 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44706588;END=44706599;PERIOD=4;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:0:0:40.00|40.00:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8146 chr21 44712076 GANGSTR_445569 CACCCACCCACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44712076;END=44712087;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8147 chr21 44713492 GANGSTR_445571 TTATTTTATTTTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44713492;END=44713511;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8148 chr21 44718492 GANGSTR_445572 ACACACACACACAC ACACACACACACACAC . . INFRAME_PGEOM=0.94;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44718492;END=44718505;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:62:0:0:0:36.25|25.75:0|0:14.41:-0.95:48:-1.87:0|30;2|18:0|28;2|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8149 chr21 44718833 GANGSTR_445573 CACGCACGCACG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44718833;END=44718844;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:21.50|29.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8150 chr21 44720403 GANGSTR_445574 TTATTTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44720403;END=44720422;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8151 chr21 44720658 GANGSTR_445575 AGTAGTAGTAGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44720658;END=44720669;PERIOD=3;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8152 chr21 44728760 GANGSTR_445576 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44728760;END=44728775;PERIOD=4;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8153 chr21 44732635 GANGSTR_445577 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44732635;END=44732646;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:29.48|24.52:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8154 chr21 44734481 GANGSTR_445578 AGGAGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44734481;END=44734492;PERIOD=3;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:1:20.00|20.00:0|0:.:0:.:0:-27|1;0|28:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8155 chr21 44737183 GANGSTR_445579 GTTTTGTTTTGTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44737183;END=44737197;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8156 chr21 44739968 GANGSTR_445580 CTGCTGCTGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44739968;END=44739979;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8157 chr21 44747460 GANGSTR_445581 TCAATCAATCAATCAATCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44747460;END=44747479;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8158 chr21 44754764 GANGSTR_445582 TGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.73;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44754764;END=44754781;PERIOD=2;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:1:1:34.50|34.50:0|0:.:0:.:0:-4|1;0|38:-4|1;0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8159 chr21 44755160 GANGSTR_445583 AGTGAGTGAGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44755160;END=44755171;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8160 chr21 44758390 GANGSTR_445584 CCACGCCACGCCACGCCACG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44758390;END=44758409;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8161 chr21 44771209 GANGSTR_445585 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.93;INFRAME_UP=0.05;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=44771209;END=44771256;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-12,-8;DP=69;DSNP=0;DSTUTTER=4;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-12|-8:1:0.5:69:0:4:1:34.97|34.03:0|0:27.41:-0:33:-0.53:-14|1;-12|16;-10|3;-8|13:-14|1;-12|14;-10|2;-8|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8162 chr21 44775937 GANGSTR_445586 CCAGCCAGCCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44775937;END=44775948;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8163 chr21 44777248 GANGSTR_445588 AATAATAATAATAATAATAATAATAATAATAATAATAAT AATAATAATAATAATAATAATAATAATAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=44777248;END=44777286;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-9;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-9|-9:1:1:50:0:0:0:25.00|25.00:0|0:7.8:0:.:0:-9|21:-9|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8164 chr21 44779535 GANGSTR_445589 CACACACACACACACACACA . . . INFRAME_PGEOM=0.99;INFRAME_UP=0.02;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44779535;END=44779554;PERIOD=2;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:3:0:30.50|30.50:0|0:.:0:.:0:-2|3;0|42:-2|3;0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8165 chr21 44780395 GANGSTR_445590 GTGTGTGTGTGT GTGTGTGTGT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44780395;END=44780406;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:46:0:0:0:23.00|23.00:0|0:10.03:0:.:0:-2|35:-2|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8166 chr21 44787988 GANGSTR_445591 GAGGAGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44787988;END=44787997;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:-11|1;0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8167 chr21 44796237 GANGSTR_445593 TGGTTGGTTGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44796237;END=44796248;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8168 chr21 44800286 GANGSTR_445594 GTGTGTGTGTGTGT GTGTGTGTGTGTGTGT . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44800286;END=44800299;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=49;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:49:0:1:0:24.01|24.99:0|0:10.43:-0:39:-0.13:-19|1;-2|2;0|18;2|17:-2|1;0|18;2|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8169 chr21 44803456 GANGSTR_445595 GAGGGAGGGAGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44803456;END=44803471;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8170 chr21 44805241 GANGSTR_445596 GTGTGTGTGTGTGT . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.73;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=44805241;END=44805254;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:2:1:26.50|26.50:0|0:.:0:.:0:-3|1;-2|2;0|34:-2|2;0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8171 chr21 44805773 GANGSTR_445597 GTGTGTGTGTGT GTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.9;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44805773;END=44805784;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:60:0:0:2:30.97|29.03:0|0:52.82:0:53:0:-18|6;-5|2;0|28;4|15:0|22;4|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8172 chr21 44806865 GANGSTR_445598 GGATGGGTGGGTGGG GAATGGGTGGGTGGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44806868;END=44806879;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:43:0:0:0:18.22|24.78:0|0:44.14:-0.41:34:-0.31:0|26:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8173 chr21 44820489 GANGSTR_445599 GCCCTGCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44820489;END=44820498;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8174 chr21 44825134 GANGSTR_445600 TATATATATATATATATATATATATA TATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.14;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=44825134;END=44825159;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2,8;DP=33;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-2|8:1:0.5:33:0:2:1:21.93|11.07:0|0:7.21:-1.03:23:-0.19:-4|1;-2|12;0|2;8|3:-4|1;-2|12;8|3:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8175 chr21 44826082 GANGSTR_445601 AAATTAAAAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44826082;END=44826095;PERIOD=7;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:1:1:29.00|29.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8176 chr21 44826539 GANGSTR_445602 AACACAACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44826539;END=44826548;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8177 chr21 44827206 GANGSTR_445603 AGAGAGAGAGAGAGAG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44827206;END=44827221;PERIOD=2;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:1:2:33.50|33.50:0|0:.:0:.:0:-2|1;0|45:-2|1;0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8178 chr21 44833324 GANGSTR_445604 TTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44833324;END=44833331;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8179 chr21 44835003 GANGSTR_445605 AGCAGCAGCAGCAGCAGCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44835003;END=44835023;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|25:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8180 chr21 44835705 GANGSTR_445606 GCCATGAGCCATGAGCCATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=44835705;END=44835725;PERIOD=7;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8181 chr21 44836219 GANGSTR_445607 CACACACACACACACACACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44836219;END=44836246;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:1:0:30.00|35.00:0|0:.:0:.:0:0|35:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8182 chr21 44843442 GANGSTR_445608 GGAGGAGGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44843442;END=44843453;PERIOD=3;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|28:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8183 chr21 44847721 GANGSTR_445610 CCGGCCCCGGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.04;START=44847721;END=44847732;PERIOD=6;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=1;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:1:5:23.80|21.20:0|0:.:0:.:0:0|24;1|1:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8184 chr21 44850044 GANGSTR_445612 GACAGACAGACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44850044;END=44850055;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8185 chr21 44851174 GANGSTR_445613 GACAGACAGACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44851174;END=44851185;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8186 chr21 44868344 GANGSTR_445615 CTGCTGCTGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44868344;END=44868355;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8187 chr21 44873671 GANGSTR_445616 CCAGCCAGCCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44873671;END=44873682;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:2:25.50|25.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8188 chr21 44880074 GANGSTR_445617 GGAGGAGGAGGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=44880074;END=44880088;PERIOD=3;NSKIP=0;NFILT=0;DP=35;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:0:1:17.50|17.50:0|0:.:0:.:0:0|19:0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8189 chr21 44886918 GANGSTR_445618 TTTCATTTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44886918;END=44886927;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8190 chr21 44888455 GANGSTR_445619 TGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44888455;END=44888468;PERIOD=2;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:2:0:28.00|28.00:0|0:.:0:.:0:-2|1;0|37:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8191 chr21 44888571 GANGSTR_445620 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44888571;END=44888582;PERIOD=2;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:1:22.00|22.00:0|0:.:0:.:0:0|36:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8192 chr21 44893166 GANGSTR_445621 AGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44893166;END=44893177;PERIOD=2;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|53:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8193 chr21 44894686 GANGSTR_445622 TTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44894686;END=44894695;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8194 chr21 44895000 GANGSTR_445623 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=44895000;END=44895011;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:1:1:32.00|32.00:0|0:.:0:.:0:-1|1;0|46:-4|1;0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8195 chr21 44898752 GANGSTR_445624 AGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44898752;END=44898763;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8196 chr21 44901359 GANGSTR_445625 GAGGGAGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44901359;END=44901370;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8197 chr21 44914537 GANGSTR_445626 CTCCTCCTCCTCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44914537;END=44914551;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|51:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8198 chr21 44918365 GANGSTR_445628 CTGGCCCTGGCCCTGGCCCTGGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44918365;END=44918388;PERIOD=6;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|38:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8199 chr21 44918727 GANGSTR_445629 ACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44918727;END=44918740;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|41:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8200 chr21 44919194 GANGSTR_445630 CCCACCCACCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44919194;END=44919205;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8201 chr21 44926595 GANGSTR_445631 CCCTCCCTCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=44926595;END=44926606;PERIOD=4;NSKIP=0;NFILT=0;DP=33;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:33:0:0:0:16.50|16.50:0|0:.:0:.:0:0|21:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8202 chr21 44947315 GANGSTR_445632 AAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44947315;END=44947334;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8203 chr21 44953027 GANGSTR_445633 AAACAAACAAACAAACAAACAAACAAACAAAC AAACAAACAAACAAACAAACAAACAAAC . . INFRAME_PGEOM=0.98;INFRAME_UP=0.06;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44953027;END=44953058;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:73:0:0:0:36.78|36.22:0|0:12.89:-0:39:-0.48:-4|17;0|17:-4|17;0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8204 chr21 44953694 GANGSTR_445634 TAATAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44953694;END=44953708;PERIOD=3;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|52:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8205 chr21 44956174 GANGSTR_445635 AATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44956174;END=44956182;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8206 chr21 44956259 GANGSTR_445636 TTTCTTTTCTTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.94;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=44956259;END=44956273;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:2:36.00|36.00:0|0:.:0:.:0:-1|2;0|49:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8207 chr21 44958347 GANGSTR_445637 TGTTTGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44958347;END=44958362;PERIOD=4;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8208 chr21 44964346 GANGSTR_445638 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44964346;END=44964357;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8209 chr21 44966296 GANGSTR_445639 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44966296;END=44966307;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8210 chr21 44969713 GANGSTR_445640 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44969713;END=44969724;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8211 chr21 44975828 GANGSTR_445641 ACCCACCCACCCACCC ACCCCCCCACCCACCC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.07;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.07;OUTFRAME_DOWN=0.07;START=44975828;END=44975843;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=37;DSNP=0;DSTUTTER=8;DFLANKINDEL=4;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:37:0:8:4:17.62|19.38:0|0:20.35:-0.25:26:-1.99:0|13;3|1;6|1;9|1:0|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8212 chr21 44980145 GANGSTR_445642 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44980145;END=44980156;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8213 chr21 44985201 GANGSTR_445643 AGGAAGCGCAAGCGC AAGAAGCGCAAGCGC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=44985204;END=44985215;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:51:0:0:0:32.00|19.00:0|0:64.49:-1.04:51:-0.11:0|34:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8214 chr21 44998231 GANGSTR_445645 TGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=44998231;END=44998246;PERIOD=2;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|51:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8215 chr21 45001276 GANGSTR_445646 AAAAGAAAGAAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.63;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.12;START=45001276;END=45001293;PERIOD=9;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:3:26.50|26.50:0|0:.:0:.:0:-3|1;-2|1;-1|1;0|26:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8216 chr21 45008262 GANGSTR_445647 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45008262;END=45008281;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8217 chr21 45009721 GANGSTR_445648 AACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45009721;END=45009735;PERIOD=3;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|48:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8218 chr21 45015557 GANGSTR_445649 TAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45015557;END=45015565;PERIOD=3;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:0:19.50|19.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8219 chr21 45016269 GANGSTR_445650 ACACACACACACACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45016269;END=45016292;PERIOD=2;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:2:0:34.00|34.00:0|0:.:0:.:0:-2|2;0|40:-2|1;0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8220 chr21 45025474 GANGSTR_445652 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45025474;END=45025485;PERIOD=2;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8221 chr21 45025795 GANGSTR_445653 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45025795;END=45025806;PERIOD=2;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|41:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8222 chr21 45026325 GANGSTR_445654 GGAGGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45026325;END=45026333;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8223 chr21 45027234 GANGSTR_445655 CACACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45027234;END=45027247;PERIOD=2;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:1:36.50|36.50:0|0:.:0:.:0:0|60:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8224 chr21 45029311 GANGSTR_445656 AAATTTAAATTTAAATTTTTTTA AAATTTAAATTTAAATTTTTTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45029311;END=45029328;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=7;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:69:0:0:0:38.50|30.50:0|0:84.97:-0.46:56:-0.11:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8225 chr21 45037119 GANGSTR_445658 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45037119;END=45037130;PERIOD=2;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|49:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8226 chr21 45054967 GANGSTR_445659 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45054967;END=45054978;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8227 chr21 45056086 GANGSTR_445660 AAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA AAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA . . INFRAME_PGEOM=0.91;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.09;START=45056086;END=45056150;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-10;DP=96;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-10:1:0.5:96:0:1:0:52.35|43.65:0|0:19.52:-0.76:35:-0.14:-10|12;0|12:-10|12;0|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8228 chr21 45057368 GANGSTR_445661 AAATAAATAAATAAATAAATAAAT AAATAAATAAATAAATAAAT . . INFRAME_PGEOM=0.96;INFRAME_UP=0.08;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45057368;END=45057391;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:45:0:0:0:22.63|22.37:0|0:6.26:0:26:-0.36:-4|13;0|12:-4|13;0|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8229 chr21 45062076 GANGSTR_445662 AATTAATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=45062076;END=45062091;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:-1|1;0|37:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8230 chr21 45062245 GANGSTR_445663 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45062245;END=45062260;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8231 chr21 45079423 GANGSTR_445664 CGCCGCCGCCGCCGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45079423;END=45079437;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|30:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8232 chr21 45079724 GANGSTR_445665 GGGGCTGGGGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45079724;END=45079735;PERIOD=6;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|35:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8233 chr21 45080445 GANGSTR_445666 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45080445;END=45080459;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:1:1:32.50|32.50:0|0:.:0:.:0:0|38:-5|1;0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8234 chr21 45082627 GANGSTR_445667 ATTCATTCATTCATTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45082627;END=45082642;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8235 chr21 45083984 GANGSTR_445668 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45083984;END=45083995;PERIOD=2;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8236 chr21 45085413 GANGSTR_445669 TTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45085413;END=45085427;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8237 chr21 45087098 GANGSTR_445670 GTTTGTTTGTTTGTTTGTTTGTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45087098;END=45087125;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8238 chr21 45087294 GANGSTR_445671 GTGTGTGTGTGTGTGTGT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45087294;END=45087311;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:1:0:27.00|27.00:0|0:.:0:.:0:-2|1;0|41:-2|1;0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8239 chr21 45091572 GANGSTR_445672 GTTGTTGTTGTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45091572;END=45091586;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:1:1:32.00|32.00:0|0:.:0:.:0:-5|1;0|41:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8240 chr21 45097480 GANGSTR_445674 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45097480;END=45097491;PERIOD=2;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|50:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8241 chr21 45100132 GANGSTR_445675 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45100132;END=45100147;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8242 chr21 45101143 GANGSTR_445676 AGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT AGATAGATAGATAGATAGATAGATAGATAGAT . . INFRAME_PGEOM=0.91;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45101143;END=45101182;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-8;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-8:1:0.5:70:0:0:0:35.01|34.99:0|0:33.37:0:36:0:-8|17;0|15:-8|18;0|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8243 chr21 45106484 GANGSTR_445677 CCTTGCCTTGCCTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45106484;END=45106498;PERIOD=5;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|54:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8244 chr21 45107458 GANGSTR_445678 GAAGAAGAAGAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45107458;END=45107472;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|35:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8245 chr21 45108547 GANGSTR_445679 TTCTTTTCTTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45108547;END=45108561;PERIOD=5;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8246 chr21 45114733 GANGSTR_445681 TCATTCATTCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45114733;END=45114744;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8247 chr21 45128060 GANGSTR_445682 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45128060;END=45128069;PERIOD=5;NSKIP=0;NFILT=0;DP=82;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:82:0:0:0:41.00|41.00:0|0:.:0:.:0:0|59:0|59:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8248 chr21 45128412 GANGSTR_445683 TCCTTTCCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45128412;END=45128421;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:32.00|28.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8249 chr21 45128639 GANGSTR_445684 TTTGTTTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=45128639;END=45128658;PERIOD=5;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|22:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8250 chr21 45131599 GANGSTR_445685 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45131599;END=45131613;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8251 chr21 45132607 GANGSTR_445686 CCAGCCAGCCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45132607;END=45132618;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8252 chr21 45132964 GANGSTR_445687 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45132964;END=45132978;PERIOD=5;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8253 chr21 45137600 GANGSTR_445688 TTTATTTTATTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45137600;END=45137614;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:28.45|26.55:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8254 chr21 45139586 GANGSTR_445689 GGGCGGGCGGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45139586;END=45139597;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8255 chr21 45142717 GANGSTR_445690 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45142717;END=45142728;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8256 chr21 45145204 GANGSTR_445691 CAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45145204;END=45145218;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8257 chr21 45145894 GANGSTR_445692 TCTCTCTCTCTCTCTCTCTCTCTCTC . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45145894;END=45145919;PERIOD=2;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:1:0:37.50|37.50:0|0:.:0:.:0:-2|2;0|32:-2|1;0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8258 chr21 45146235 GANGSTR_445693 CCTCCTCCTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45146235;END=45146246;PERIOD=3;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8259 chr21 45148953 GANGSTR_445694 CCCGCCCGCCCG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45148953;END=45148964;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8260 chr21 45149984 GANGSTR_445695 TGATTGATTGATTGATTGATTGATTGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45149984;END=45150011;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8261 chr21 45153404 GANGSTR_445696 ACCCTCACCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45153404;END=45153415;PERIOD=6;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|27:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8262 chr21 45162059 GANGSTR_445697 TTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45162059;END=45162073;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:33.01|29.99:0|0:.:0:.:0:0|45:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8263 chr21 45166292 GANGSTR_445698 TTCTTTTCTTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45166292;END=45166306;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8264 chr21 45167065 GANGSTR_445699 CAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45167065;END=45167073;PERIOD=3;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8265 chr21 45168369 GANGSTR_445700 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45168369;END=45168383;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8266 chr21 45168572 GANGSTR_445701 CCTCCCTCCCTCCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45168572;END=45168587;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:1:20.50|20.50:0|0:.:0:.:0:-20|1;0|29:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8267 chr21 45171436 GANGSTR_445702 AAAACAAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=45171436;END=45171460;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8268 chr21 45171983 GANGSTR_445703 TGTGTGTGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45171983;END=45172008;PERIOD=2;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:1:1:35.50|35.50:0|0:.:0:.:0:-2|2;0|42:-2|1;0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8269 chr21 45177487 GANGSTR_445704 ACCCCCACCCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45177487;END=45177498;PERIOD=6;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8270 chr21 45186250 GANGSTR_445706 GATCGATCGATC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45186250;END=45186261;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8271 chr21 45191255 GANGSTR_445707 CTCCTCCTCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45191255;END=45191266;PERIOD=3;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8272 chr21 45192217 GANGSTR_445708 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45192217;END=45192231;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8273 chr21 45195750 GANGSTR_445709 CCTGCCTGCCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45195750;END=45195761;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8274 chr21 45196615 GANGSTR_445711 CAGGGGTCAGGGGTCAGGGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45196615;END=45196635;PERIOD=7;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|29:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8275 chr21 45200084 GANGSTR_445713 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45200084;END=45200095;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8276 chr21 45202408 GANGSTR_445714 AAACAAACAAACAAACAAACAAACAAAC AAACAAACAAACAAACAAACAAACAAACAAAC . . INFRAME_PGEOM=0.96;INFRAME_UP=0.07;INFRAME_DOWN=0.09;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45202408;END=45202435;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:59:0:0:0:30.48|28.52:0|0:6.31:-0.15:29:0:-10|1;-8|1;0|15;4|11:0|14;4|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8277 chr21 45202571 GANGSTR_445715 AAGGAAGGAAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45202571;END=45202582;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8278 chr21 45205287 GANGSTR_445716 AAATAAAATAAAATAAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45205287;END=45205306;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:1:25.00|28.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8279 chr21 45209243 GANGSTR_445718 AGGCGCAGGCGCAGGCGCAGGCGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45209243;END=45209266;PERIOD=6;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|34:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8280 chr21 45209702 GANGSTR_445719 GGCGGCGGCGGCC GGCGGCGGCGGCT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45209702;END=45209713;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:52:0:0:0:30.97|21.03:0|0:40.38:-0.76:44:-0.12:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8281 chr21 45217072 GANGSTR_445720 TGGTGGTGG TGGTGCTGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45217072;END=45217080;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:48:0:0:0:25.50|22.50:0|0:82.9:-0.11:47:-0.11:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8282 chr21 45223630 GANGSTR_445721 AGAAGAAGAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45223630;END=45223641;PERIOD=3;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|26:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8283 chr21 45224566 GANGSTR_445722 CCAGCCAGCCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45224566;END=45224577;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8284 chr21 45233329 GANGSTR_445723 AGGCCCAGGCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45233329;END=45233340;PERIOD=6;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8285 chr21 45234839 GANGSTR_445724 AGGAAGGAAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45234839;END=45234850;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:23.60|31.40:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8286 chr21 45243735 GANGSTR_445727 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45243735;END=45243746;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:1:24.00|24.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8287 chr21 45245236 GANGSTR_445728 CCTCCTCCTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45245236;END=45245247;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:1:23.00|23.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8288 chr21 45246802 GANGSTR_445729 GAGAAGAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45246802;END=45246811;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8289 chr21 45250304 GANGSTR_445730 AAAGAAAGAAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45250304;END=45250323;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8290 chr21 45253818 GANGSTR_445731 AAACAAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45253818;END=45253841;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8291 chr21 45254135 GANGSTR_445732 CTTCCTTCCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45254135;END=45254146;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8292 chr21 45256463 GANGSTR_445733 AAACAAACAAACAAACAAACAAAC AAACAAACAAACAAACAAAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45256463;END=45256486;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:54:0:0:0:27.00|27.00:0|0:9.73:0:.:0:-4|32:-4|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8293 chr21 45258359 GANGSTR_445734 AAACCAAACCAAACCAAACC AAACCAAACCAAACC . . INFRAME_PGEOM=1;INFRAME_UP=0.06;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45258359;END=45258378;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-5;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-5|-5:1:1:52:0:0:1:26.00|26.00:0|0:10.32:0:.:0:-5|31;0|1:-5|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8294 chr21 45259288 GANGSTR_445735 AATAATAATAATAATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45259288;END=45259311;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:1:1:31.01|35.99:0|0:.:0:.:0:-18|1;-3|1;0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8295 chr21 45260112 GANGSTR_445736 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45260112;END=45260123;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8296 chr21 45261326 GANGSTR_445737 TATTTATTTATTTATTTATTTATT TATTTATTTATTTATTTATT . . INFRAME_PGEOM=0.96;INFRAME_UP=0.09;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45261326;END=45261349;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:63:0:0:0:33.84|29.16:0|0:4.93:-0.44:30:-0.14:-4|10;0|16:-4|11;0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8297 chr21 45262944 GANGSTR_445739 TTATTTATTTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45262944;END=45262967;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8298 chr21 45264754 GANGSTR_445740 AATATTTCCTTCCTTCC ACTATTTCCTTCCTTCC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45264759;END=45264770;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:63:0:0:0:34.00|29.00:0|0:91.57:-0.23:55:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8299 chr21 45265046 GANGSTR_445741 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45265046;END=45265057;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8300 chr21 45268137 GANGSTR_445742 TTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT TTATTTATTTATTTATTTATTTATTTATTTATTTAT,TTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=45268137;END=45268176;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4,8;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|8:1:0.5:59:0:0:0:32.04|26.96:0|0:14.43:-0.37:25:0:-4|12;0|1;8|3:-4|12;8|3:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8301 chr21 45268853 GANGSTR_445743 GTGGCTGGCTGGC GCGGCTGGCTGGC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45268854;END=45268865;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:46:0:0:0:23.00|23.00:0|0:11.43:0:.:0:0|30:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8302 chr21 45269957 GANGSTR_445744 AAGGAAGGAAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45269957;END=45269968;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:24.55|33.45:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8303 chr21 45270576 GANGSTR_445745 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=45270576;END=45270591;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|24:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8304 chr21 45272714 GANGSTR_445746 TTTAATTTTAATTTAAA TTTAATTTTAATTTAAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.96;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=45272714;END=45272725;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=1;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|1:1:0.5:69:0:0:0:32.97|36.03:0|0:46.18:-0.12:45:-0.43:0|17;1|14:0|19;1|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8305 chr21 45273020 GANGSTR_445747 ATTTTAATTTTAATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45273020;END=45273037;PERIOD=6;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|36:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8306 chr21 45273818 GANGSTR_445748 TGGCAGCTTGGCAGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45273818;END=45273833;PERIOD=8;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|31:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8307 chr21 45277167 GANGSTR_445750 AACAACAACAACAACAACAACAAA AACAACAACAACAACAAA,AACAACAACAACAACAACAACAAC . . INFRAME_PGEOM=0.91;INFRAME_UP=0.04;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45277167;END=45277187;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-6,0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-6|0:1:0.5:63:0:0:0:24.99|38.01:0|0:27.35:-1.1:47:-0.27:-6|11;0|18:-6|10;0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8308 chr21 45278418 GANGSTR_445751 TTTGTTTGTTTG TTTGTTTGTTTGTTTG . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45278418;END=45278429;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:4|4:1:1:73:0:0:0:36.50|36.50:0|0:17:0:.:0:-15|1;0|3;4|48:4|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8309 chr21 45283227 GANGSTR_445752 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45283227;END=45283242;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:33.50|23.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8310 chr21 45285125 GANGSTR_445755 GGGCCGGGCCGGGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=45285125;END=45285139;PERIOD=5;NSKIP=0;NFILT=0;DP=29;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:29:0:0:1:14.50|14.50:0|0:.:0:.:0:0|15:0|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8311 chr21 45289964 GANGSTR_445756 CGGGCGGGCGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45289964;END=45289975;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|31:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8312 chr21 45298198 GANGSTR_445757 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=45298198;END=45298209;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:2:24.50|24.50:0|0:.:0:.:0:-1|1;0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8313 chr21 45303466 GANGSTR_445758 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45303466;END=45303480;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8314 chr21 45305710 GANGSTR_445760 AGGTGCGCAGGTGCGC AGGTGCGC . . INFRAME_PGEOM=0.98;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45305710;END=45305725;PERIOD=8;NSKIP=0;NFILT=0;BPDIFFS=-8;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-8:1:0.5:53:0:0:0:27.92|25.08:0|0:15.76:-0.06:42:0:-8|17;0|17:-8|19;0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8315 chr21 45307534 GANGSTR_445761 TTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45307534;END=45307553;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8316 chr21 45308280 GANGSTR_445762 ATATATATATATAT ATATATATATAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45308280;END=45308293;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:54:0:0:0:27.00|27.00:0|0:12.48:0:.:0:-2|42:-2|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8317 chr21 45308436 GANGSTR_445763 AAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45308436;END=45308443;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8318 chr21 45314985 GANGSTR_445765 TTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.03;START=45314985;END=45314992;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:1:20.50|20.50:0|0:.:0:.:0:0|30;1|1:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8319 chr21 45319618 GANGSTR_445766 TCGTGTGTGTGTGT TTGTGTGTGTGTGT . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45319620;END=45319631;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=48;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:48:0:1:0:27.58|20.42:0|0:56.15:-0.44:43:-0.45:-2|1;0|38:-2|1;0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8320 chr21 45321784 GANGSTR_445767 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45321784;END=45321795;PERIOD=4;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8321 chr21 45323371 GANGSTR_445768 GGGCTGGGCTGGGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45323371;END=45323385;PERIOD=5;NSKIP=0;NFILT=0;DP=35;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:0:0:17.50|17.50:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8322 chr21 45327597 GANGSTR_445770 CAACAACAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45327597;END=45327614;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|29:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8323 chr21 45331131 GANGSTR_445771 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45331131;END=45331142;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8324 chr21 45331451 GANGSTR_445772 TCTGTCTGTCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45331451;END=45331462;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|45:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8325 chr21 45334416 GANGSTR_445773 TTTGTTTTGTTTTGTTTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=45334416;END=45334445;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|17:0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8326 chr21 45337664 GANGSTR_445774 GGGTATTGTGGGTATTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45337664;END=45337681;PERIOD=9;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|29:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8327 chr21 45338361 GANGSTR_445776 AGAGAAGAGAAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45338361;END=45338375;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8328 chr21 45350507 GANGSTR_445777 GGGTGGGTGGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45350507;END=45350518;PERIOD=4;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8329 chr21 45357267 GANGSTR_445780 CTTGGCTTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45357267;END=45357276;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:32.04|24.96:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8330 chr21 45357441 GANGSTR_445781 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45357441;END=45357455;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8331 chr21 45362880 GANGSTR_445782 GAGGGAGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45362880;END=45362891;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8332 chr21 45364250 GANGSTR_445783 AGAGAGAGAGAG . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=45364250;END=45364261;PERIOD=2;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:1:0:18.50|18.50:0|0:.:0:.:0:-2|1;0|19:-2|1;0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8333 chr21 45365273 GANGSTR_445784 CATTTCATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45365273;END=45365282;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:32.50|27.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8334 chr21 45367560 GANGSTR_445785 TTTCTTTTCTTTTCT TTTCTTTTCTTTTCTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.1;START=45367560;END=45367574;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=1;DP=84;DSNP=0;DSTUTTER=0;DFLANKINDEL=6;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|1:1:0.5:84:0:0:6:41.30|42.70:0|0:51.11:-0.05:58:0:-1|1;0|33;1|14;2|1:0|30;1|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8335 chr21 45378237 GANGSTR_445786 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45378237;END=45378248;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:1:24.50|24.50:0|0:.:0:.:0:-15|1;0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8336 chr21 45378521 GANGSTR_445787 TGTGGTGTGGTGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45378521;END=45378535;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8337 chr21 45378816 GANGSTR_445788 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45378816;END=45378827;PERIOD=2;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:1:21.00|21.00:0|0:.:0:.:0:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8338 chr21 45379495 GANGSTR_445789 CCCTGTCCCTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45379495;END=45379506;PERIOD=6;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8339 chr21 45384813 GANGSTR_445790 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45384813;END=45384824;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8340 chr21 45395610 GANGSTR_445792 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45395610;END=45395621;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8341 chr21 45397777 GANGSTR_445793 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45397777;END=45397791;PERIOD=5;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:3:20.00|20.00:0|0:.:0:.:0:0|28:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8342 chr21 45402161 GANGSTR_445794 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45402161;END=45402172;PERIOD=2;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|56:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8343 chr21 45405785 GANGSTR_445795 GCCTGCCTGCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45405785;END=45405796;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8344 chr21 45408114 GANGSTR_445796 TGCATGCATGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45408114;END=45408125;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8345 chr21 45408266 GANGSTR_445797 TTGTTTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45408266;END=45408281;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:29.50|24.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8346 chr21 45410392 GANGSTR_445798 ATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45410392;END=45410403;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|32:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8347 chr21 45412380 GANGSTR_445799 TTGTTTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45412380;END=45412395;PERIOD=4;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|50:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8348 chr21 45417821 GANGSTR_445800 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45417821;END=45417832;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8349 chr21 45423030 GANGSTR_445801 ATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45423030;END=45423037;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8350 chr21 45424608 GANGSTR_445802 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45424608;END=45424619;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8351 chr21 45427367 GANGSTR_445803 TCATTTTCATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45427367;END=45427378;PERIOD=6;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|37:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8352 chr21 45431434 GANGSTR_445804 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45431434;END=45431448;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8353 chr21 45433592 GANGSTR_445805 TCTCCTCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45433592;END=45433601;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8354 chr21 45434277 GANGSTR_445806 CTTCTTCTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45434277;END=45434288;PERIOD=3;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:4:35.50|35.50:0|0:.:0:.:0:0|42:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8355 chr21 45435297 GANGSTR_445807 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45435297;END=45435308;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|40:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8356 chr21 45436534 GANGSTR_445808 TTTTAATTTTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45436534;END=45436545;PERIOD=6;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|47:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8357 chr21 45439992 GANGSTR_445809 TTTTCTTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.03;START=45439992;END=45440006;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:0|29;1|1:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8358 chr21 45440514 GANGSTR_445810 CAAAAAACAAAAAACAAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45440514;END=45440534;PERIOD=7;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=6;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:1:38.00|38.00:0|0:.:0:.:0:0|39:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8359 chr21 45443659 GANGSTR_445811 TTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45443659;END=45443678;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:0:0:36.00|36.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8360 chr21 45448976 GANGSTR_445813 TTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45448976;END=45448987;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8361 chr21 45453005 GANGSTR_445814 TGTAAATGTAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45453005;END=45453016;PERIOD=6;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|46:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8362 chr21 45466069 GANGSTR_445815 TTGGTTGGTTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45466069;END=45466080;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|52:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8363 chr21 45466942 GANGSTR_445816 CAAGCAAGCAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45466942;END=45466953;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8364 chr21 45467062 GANGSTR_445817 TTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45467062;END=45467076;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8365 chr21 45467414 GANGSTR_445818 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.97;INFRAME_UP=0.09;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45467414;END=45467447;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=67;DSNP=0;DSTUTTER=4;DFLANKINDEL=2;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:2|2:1:1:67:0:4:2:33.50|33.50:0|0:4.62:0:.:0:0|12;2|19:0|3;2|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8366 chr21 45468366 GANGSTR_445819 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45468366;END=45468381;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8367 chr21 45469110 GANGSTR_445820 TACATACATACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45469110;END=45469121;PERIOD=4;NSKIP=0;NFILT=0;DP=81;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:81:0:0:0:40.50|40.50:0|0:.:0:.:0:0|61:0|59:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8368 chr21 45476107 GANGSTR_445821 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45476107;END=45476118;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:1:35.00|35.00:0|0:.:0:.:0:0|56:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8369 chr21 45477171 GANGSTR_445822 TCTCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45477171;END=45477186;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:1:1:28.50|28.50:0|0:.:0:.:0:0|36:-2|1;0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8370 chr21 45479314 GANGSTR_445823 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=45479314;END=45479325;PERIOD=3;NSKIP=0;NFILT=0;DP=95;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:95:0:0:0:47.50|47.50:0|0:.:0:.:0:0|67;1|1:0|67:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8371 chr21 45480485 GANGSTR_445824 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45480485;END=45480496;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8372 chr21 45484055 GANGSTR_445825 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45484055;END=45484066;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|57:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8373 chr21 45484390 GANGSTR_445826 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45484390;END=45484401;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8374 chr21 45488493 GANGSTR_445827 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45488493;END=45488504;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:-19|1;0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8375 chr21 45492346 GANGSTR_445828 TGTTTGTTTGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45492346;END=45492365;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:2:28.00|28.00:0|0:.:0:.:0:-27|1;0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8376 chr21 45500414 GANGSTR_445829 TCTTCTTCTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.06;START=45500414;END=45500425;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:2:25.00|25.00:0|0:.:0:.:0:-2|1;-1|1;0|28:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8377 chr21 45504509 GANGSTR_445830 AGCAAGCAAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45504509;END=45504520;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8378 chr21 45505783 GANGSTR_445831 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45505783;END=45505794;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8379 chr21 45507947 GANGSTR_445832 TCTGTCTGTCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45507947;END=45507958;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8380 chr21 45514690 GANGSTR_445833 TTTCTTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45514690;END=45514699;PERIOD=5;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:0:19.50|19.50:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8381 chr21 45514937 GANGSTR_445834 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=45514937;END=45514948;PERIOD=4;NSKIP=0;NFILT=0;DP=17;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:17:0:0:0:8.50|8.50:0|0:.:0:.:0:0|12:0|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8382 chr21 45517549 GANGSTR_445835 TTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45517549;END=45517563;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8383 chr21 45521035 GANGSTR_445836 CAACAACAACAACAACAACAA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45521035;END=45521055;PERIOD=3;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:1:0:35.50|35.50:0|0:.:0:.:0:-3|1;0|37:-3|1;0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8384 chr21 45523947 GANGSTR_445837 GGGAGGGAGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45523947;END=45523958;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8385 chr21 45525401 GANGSTR_445838 GAAATGAAATGAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45525401;END=45525415;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8386 chr21 45531590 GANGSTR_445839 TTTCTTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.06;START=45531590;END=45531599;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:1:2:23.00|23.00:0|0:.:0:.:0:-1|1;0|30:-5|1;0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8387 chr21 45533014 GANGSTR_445840 GTTTGTTTGTTTGTTTTGAGG GTTTGTTTGTTTGTTTTGAGA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45533014;END=45533029;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=78;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:78:0:0:0:39.00|39.00:0|0:20.17:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8388 chr21 45543336 GANGSTR_445841 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45543336;END=45543347;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8389 chr21 45546444 GANGSTR_445842 CTGGGCTGGGCTGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45546444;END=45546458;PERIOD=5;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8390 chr21 45548944 GANGSTR_445843 TGCTGCTGCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45548944;END=45548955;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8391 chr21 45549512 GANGSTR_445844 ATTATTATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45549512;END=45549532;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8392 chr21 45554137 GANGSTR_445845 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45554137;END=45554151;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8393 chr21 45560249 GANGSTR_445847 GGGAGGGAGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45560249;END=45560260;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8394 chr21 45569882 GANGSTR_445848 AAAGAAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45569882;END=45569897;PERIOD=4;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:1:39.50|39.50:0|0:.:0:.:0:0|53:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8395 chr21 45571276 GANGSTR_445849 TATTTATTTATTTATTTATTTATTTATT TATTTATTTATTTATTTATTTATT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=45571276;END=45571303;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:42:0:0:0:21.00|21.00:0|0:5.6:0:.:0:-4|20:-4|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8396 chr21 45571960 GANGSTR_445850 TTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45571960;END=45571969;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8397 chr21 45573382 GANGSTR_445851 GGCTGGCTGGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45573382;END=45573393;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8398 chr21 45575627 GANGSTR_445852 CGTGTGGCGTGTGG CATGTGGCGTGTGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45575627;END=45575640;PERIOD=7;NSKIP=0;NFILT=0;BPDIFFS=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:53:0:0:0:26.50|26.50:0|0:14.75:0:.:0:0|38:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8399 chr21 45578473 GANGSTR_445854 TTTTGTTTTGTTTTGTTTTGTTTTGTTTTG TTTTGTTTTGTTTTGTTTTGTTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45578473;END=45578502;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-5;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-5|-5:1:1:70:0:0:0:35.00|35.00:0|0:11.49:0:.:0:-5|34:-5|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8400 chr21 45580035 GANGSTR_445855 CCCTGCCCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45580035;END=45580044;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8401 chr21 45580433 GANGSTR_445856 CCCTGCCCCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=45580433;END=45580444;PERIOD=6;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:2:18.50|18.50:0|0:.:0:.:0:0|24:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8402 chr21 45581851 GANGSTR_445857 TTCTTTTCTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45581851;END=45581866;PERIOD=8;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|26:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8403 chr21 45583668 GANGSTR_445858 GGGCAGGGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45583668;END=45583677;PERIOD=5;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:37.39|27.61:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8404 chr21 45588586 GANGSTR_445859 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45588586;END=45588600;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8405 chr21 45590902 GANGSTR_445860 GGCCTGGCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45590902;END=45590911;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8406 chr21 45595350 GANGSTR_445861 GCGCGCGCGCGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45595350;END=45595361;PERIOD=2;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:21.98|24.02:0|0:.:0:.:0:0|35:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8407 chr21 45600101 GANGSTR_445862 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45600101;END=45600112;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8408 chr21 45601385 GANGSTR_445863 CTGCCCCTGCCCCTGCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45601385;END=45601402;PERIOD=6;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|31:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8409 chr21 45601953 GANGSTR_445864 CTGCCTGCCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45601953;END=45601964;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|39:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8410 chr21 45603419 GANGSTR_445865 CTATTTCATCTATTTCATCTATTTCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45603419;END=45603445;PERIOD=9;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|29:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8411 chr21 45603613 GANGSTR_445866 CTATTTCATCTATTTCATCTATTTCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45603613;END=45603639;PERIOD=9;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|28:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8412 chr21 45603766 GANGSTR_445867 CTATTTCATCTATTTCATCTATTTCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45603766;END=45603792;PERIOD=9;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|33:.:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8413 chr21 45605345 GANGSTR_445868 CCTCCTCCTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45605345;END=45605356;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:1:1:30.00|30.00:0|0:.:0:.:0:0|40:-3|1;0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8414 chr21 45609291 GANGSTR_445869 AATAATAATAATAATAATAATAAT AATAATAATAATAATAATAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45609291;END=45609314;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-3|-3:1:1:64:0:0:0:32.00|32.00:0|0:10.66:0:.:0:-3|34:-3|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8415 chr21 45609868 GANGSTR_445870 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45609868;END=45609879;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|36:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8416 chr21 45621913 GANGSTR_445871 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45621913;END=45621924;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8417 chr21 45630188 GANGSTR_445872 TTATTTTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45630188;END=45630202;PERIOD=5;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:0:39.50|39.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8418 chr21 45632835 GANGSTR_445873 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45632835;END=45632846;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8419 chr21 45633135 GANGSTR_445874 AATAAATAAATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45633135;END=45633154;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|38:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8420 chr21 45638378 GANGSTR_445875 GGCAGGCAGGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45638378;END=45638389;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:2:33.00|33.00:0|0:.:0:.:0:-4|1;0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8421 chr21 45640732 GANGSTR_445876 CACTGCACTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45640732;END=45640741;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:1:1:27.50|27.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8422 chr21 45641516 GANGSTR_445877 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45641516;END=45641527;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8423 chr21 45642132 GANGSTR_445878 TTTATTTATTTATTTATTTATTTA TTTATTTATTTATTTATTTATTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45642132;END=45642155;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:57:0:0:1:28.50|28.50:0|0:11.43:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8424 chr21 45643770 GANGSTR_445879 TTTCTTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45643770;END=45643785;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8425 chr21 45644212 GANGSTR_445880 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45644212;END=45644223;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8426 chr21 45644578 GANGSTR_445881 AAATAAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45644578;END=45644587;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8427 chr21 45652600 GANGSTR_445882 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45652600;END=45652615;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|34:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8428 chr21 45655018 GANGSTR_445883 CTCCCCTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45655018;END=45655027;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8429 chr21 45658508 GANGSTR_445884 GCCTGCCTGCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45658508;END=45658519;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|48:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8430 chr21 45661669 GANGSTR_445885 CCCTCCCTCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45661669;END=45661680;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8431 chr21 45666456 GANGSTR_445886 GAGGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45666456;END=45666465;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8432 chr21 45667116 GANGSTR_445887 TCCTCCTCCTCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45667116;END=45667130;PERIOD=3;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8433 chr21 45668477 GANGSTR_445888 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45668477;END=45668488;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8434 chr21 45670292 GANGSTR_445889 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45670292;END=45670303;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8435 chr21 45674223 GANGSTR_445890 GCTCTGGGCTCTGGGCTCTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45674223;END=45674243;PERIOD=7;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|35:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8436 chr21 45674711 GANGSTR_445891 TTGTTGTTGTTG TTGTTGTTG . . INFRAME_PGEOM=0.97;INFRAME_UP=0.06;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45674711;END=45674722;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-3;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-3:1:0.5:44:0:0:0:25.34|18.66:0|0:8.91:-0.61:36:-0.14:-3|14;0|20:-3|14;0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8437 chr21 45680502 GANGSTR_445893 ATTTTTATTTTTATTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45680502;END=45680519;PERIOD=6;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|28:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8438 chr21 45684471 GANGSTR_445896 TTTTGTTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45684471;END=45684495;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8439 chr21 45694141 GANGSTR_445897 ATTTATTTATTTATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=45694141;END=45694164;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|23:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8440 chr21 45695066 GANGSTR_445898 CCTGCCCCACCTGCCCCACCTGCCCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=45695066;END=45695092;PERIOD=9;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:1:0:24.00|24.00:0|0:.:0:.:0:-9|1;0|17:-9|1;0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8441 chr21 45695180 GANGSTR_445899 CCTGCCCCACCTGCCCCACCTGCCCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=45695180;END=45695206;PERIOD=9;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:3:25.50|25.50:0|0:.:0:.:0:-7|1;0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8442 chr21 45696974 GANGSTR_445900 TTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=45696974;END=45696985;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:1:34.00|32.00:0|0:.:0:.:0:-1|1;0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8443 chr21 45697951 GANGSTR_445901 TTTTCTTTTCTTTTCTTTTCTTTC TTTTCTTTTCTTTTCTTTTCTTTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45697951;END=45697970;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=81;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:81:0:0:0:40.01|40.99:0|0:121.78:-0:65:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8444 chr21 45705073 GANGSTR_445902 AGGAAGGAAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45705073;END=45705084;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|44:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8445 chr21 45718017 GANGSTR_445904 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45718017;END=45718031;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8446 chr21 45718667 GANGSTR_445905 TTTCTTTTCTTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45718667;END=45718681;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8447 chr21 45719081 GANGSTR_445906 ACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.97;INFRAME_UP=0.09;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=45719081;END=45719112;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2,4;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:2|4:1:0.5:52:0:0:1:24.79|27.21:0|0:5.14:-0.15:27:-0.39:-19|1;-12|2;2|10;4|14:2|8;4|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8448 chr21 45719915 GANGSTR_445907 GCGGGGCGGGGCGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=45719915;END=45719929;PERIOD=5;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:2:19.00|19.00:0|0:.:0:.:0:0|20:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8449 chr21 45724381 GANGSTR_445909 GAGGGAGG GAGGGAGA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45724381;END=45724388;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:44:0:0:0:23.60|20.40:0|0:54.05:-0.13:39:-1.26:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8450 chr21 45724663 GANGSTR_445910 TGTCTGTCTGTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=45724663;END=45724674;PERIOD=4;NSKIP=0;NFILT=0;DP=30;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:30:0:0:4:15.00|15.00:0|0:.:0:.:0:0|21:0|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8451 chr21 45727443 GANGSTR_445911 CTCACTGCTCACTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45727443;END=45727456;PERIOD=7;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:1:23.00|23.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8452 chr21 45731008 GANGSTR_445912 CAGACAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45731008;END=45731015;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8453 chr21 45736153 GANGSTR_445913 CATCATCATCAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45736153;END=45736164;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|44:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8454 chr21 45736456 GANGSTR_445914 GTGTGGGTGTGGGTGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45736456;END=45736473;PERIOD=6;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8455 chr21 45736936 GANGSTR_445915 CTGGCCTGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45736936;END=45736945;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8456 chr21 45738654 GANGSTR_445916 GTGGGACGTGGGAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45738654;END=45738667;PERIOD=7;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|28:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8457 chr21 45742354 GANGSTR_445917 GCCAGGCCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45742354;END=45742363;PERIOD=5;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8458 chr21 45744542 GANGSTR_445918 AGCCCAGCCCAGCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=45744542;END=45744556;PERIOD=5;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8459 chr21 45744617 GANGSTR_445919 CAGGGCAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45744617;END=45744626;PERIOD=5;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8460 chr21 45745337 GANGSTR_445920 GGGCTGGGGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45745337;END=45745348;PERIOD=6;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8461 chr21 45749567 GANGSTR_445921 CTGCCTGCCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45749567;END=45749578;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|56:0|54:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8462 chr21 45750179 GANGSTR_445922 GCAGCAGCAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45750179;END=45750190;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8463 chr21 45754628 GANGSTR_445923 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45754628;END=45754639;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:18.80|24.20:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8464 chr21 45759581 GANGSTR_445925 CTCCCTCCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45759581;END=45759592;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8465 chr21 45762528 GANGSTR_445926 TCCTCCTCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45762528;END=45762539;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8466 chr21 45765280 GANGSTR_445927 GGGAGAGGGGGAGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45765280;END=45765295;PERIOD=8;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:23.13|26.87:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8467 chr21 45766042 GANGSTR_445928 TTTCTTTCTTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45766042;END=45766061;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:1:35.00|35.00:0|0:.:0:.:0:0|32:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8468 chr21 45771020 GANGSTR_445929 GCTGGGCTGGGCTGGGCTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45771020;END=45771039;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:3:23.50|23.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8469 chr21 45774161 GANGSTR_445930 CAGGCAGGCAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45774161;END=45774172;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|37;1|1:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8470 chr21 45774413 GANGSTR_445931 CTTCCTTCCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45774413;END=45774424;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8471 chr21 45781025 GANGSTR_445932 TATTATTATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45781025;END=45781042;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:1:33.50|33.50:0|0:.:0:.:0:0|44:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8472 chr21 45783246 GANGSTR_445933 TTGTTTGTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45783246;END=45783257;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8473 chr21 45784557 GANGSTR_445934 GGGAGGGAGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45784557;END=45784568;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8474 chr21 45785483 GANGSTR_445935 CCGTGGCCGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45785483;END=45785494;PERIOD=6;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|37:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8475 chr21 45792009 GANGSTR_445937 AAACCAAACCAAACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45792009;END=45792023;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8476 chr21 45792388 GANGSTR_445938 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45792388;END=45792399;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8477 chr21 45793885 GANGSTR_445940 TCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=45793885;END=45793898;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:4:27.00|27.00:0|0:.:0:.:0:-1|1;0|34;1|1:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8478 chr21 45797241 GANGSTR_445941 CTCCCTCCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45797241;END=45797252;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8479 chr21 45800259 GANGSTR_445942 TTCCTTCCTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45800259;END=45800270;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|47:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8480 chr21 45808717 GANGSTR_445943 CAAAAACAAAAACAAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45808717;END=45808734;PERIOD=6;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8481 chr21 45817688 GANGSTR_445944 AGGAGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45817688;END=45817699;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8482 chr21 45820720 GANGSTR_445945 CCTGGCCTGGCCTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45820720;END=45820734;PERIOD=5;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8483 chr21 45833986 GANGSTR_445947 GGTGGGTGGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45833986;END=45833997;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8484 chr21 45837897 GANGSTR_445948 CGCCGCGCCG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45837897;END=45837906;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8485 chr21 45854951 GANGSTR_445949 CCCTGCCCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45854951;END=45854960;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8486 chr21 45862193 GANGSTR_445950 GCCTGGCCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45862193;END=45862202;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8487 chr21 45869827 GANGSTR_445952 AGGGGCAGGGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45869827;END=45869838;PERIOD=6;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8488 chr21 45872001 GANGSTR_445953 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45872001;END=45872012;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8489 chr21 45873004 GANGSTR_445954 CAAAAACAAAAACAAAAACAAAAA CAAAAACAAAAACAAAAACAAAAACAAA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45873004;END=45873027;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=4;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=5;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:77:0:0:0:37.50|39.50:0|0:109.68:-0.05:52:-0.23:0|17;4|10:0|13;4|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8490 chr21 45875358 GANGSTR_445955 GCCCCGCCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45875358;END=45875367;PERIOD=5;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:2:19.50|19.50:0|0:.:0:.:0:0|27;1|1:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8491 chr21 45876339 GANGSTR_445956 CCCTCCCTCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45876339;END=45876350;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8492 chr21 45880686 GANGSTR_445957 CCCTAACCCTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45880686;END=45880697;PERIOD=6;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:22.50|29.50:0|0:.:0:.:0:0|37:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8493 chr21 45880821 GANGSTR_445958 AACCCAACCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45880821;END=45880830;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:29.01|27.99:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8494 chr21 45882889 GANGSTR_445959 GGGGAGGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45882889;END=45882898;PERIOD=5;NSKIP=0;NFILT=0;DP=34;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:34:0:0:0:17.00|17.00:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8495 chr21 45883451 GANGSTR_445960 AAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45883451;END=45883470;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8496 chr21 45885530 GANGSTR_445961 ACACACACACAC . . . INFRAME_PGEOM=1;INFRAME_UP=0.04;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45885530;END=45885541;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:1:0:31.50|31.50:0|0:.:0:.:0:0|53;2|1:0|49;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8497 chr21 45885800 GANGSTR_445962 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45885800;END=45885811;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:1:0:23.61|27.39:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8498 chr21 45885873 GANGSTR_445963 ACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45885873;END=45885886;PERIOD=2;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:1:22.41|22.59:0|0:.:0:.:0:0|33:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8499 chr21 45888249 GANGSTR_445964 ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT ATTTATTTATTTATTTATTTATTTATTTATTT . . INFRAME_PGEOM=0.93;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=45888249;END=45888292;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-12;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-12:1:0.5:52:0:0:0:27.22|24.78:0|0:32.72:-0.15:29:-0.94:-12|10;0|5:-12|9;0|5:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8500 chr21 45900739 GANGSTR_445965 GGCTGGGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45900739;END=45900748;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8501 chr21 45902245 GANGSTR_445966 TGATAGTGATAGTGATAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45902245;END=45902262;PERIOD=6;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8502 chr21 45902348 GANGSTR_445967 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45902348;END=45902359;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.53|31.47:0|0:.:0:.:0:0|48:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8503 chr21 45906652 GANGSTR_445968 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45906652;END=45906663;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:2:32.00|32.00:0|0:.:0:.:0:-1|1;0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8504 chr21 45924959 GANGSTR_445970 ATTTTATTTTATTTTATTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45924959;END=45924978;PERIOD=5;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8505 chr21 45932221 GANGSTR_445972 GGGGTGGGGTGGGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45932221;END=45932235;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8506 chr21 45936200 GANGSTR_445973 CTGCCTGCCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45936200;END=45936211;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8507 chr21 45965217 GANGSTR_445974 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45965217;END=45965228;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:3:35.00|35.00:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8508 chr21 45968326 GANGSTR_445975 GGGTGGGTGGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45968326;END=45968337;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.42|20.58:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8509 chr21 45970325 GANGSTR_445976 ACCAGCGACCAGCGACCAGCG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45970325;END=45970345;PERIOD=7;NSKIP=0;NFILT=0;DP=88;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:88:0:0:1:59.42|28.58:0|0:.:0:.:0:0|51:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8510 chr21 45975074 GANGSTR_445977 GGAAAGGAAAGGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45975074;END=45975088;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8511 chr21 45978766 GANGSTR_445978 TTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45978766;END=45978777;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:1:32.00|32.00:0|0:.:0:.:0:0|50:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8512 chr21 45986068 GANGSTR_445979 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45986068;END=45986079;PERIOD=4;NSKIP=0;NFILT=0;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:80:0:0:0:40.00|40.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8513 chr21 45988476 GANGSTR_445980 TGGCCTGGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=45988476;END=45988485;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=1;DFLANKINDEL=4;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:1:4:25.50|25.50:0|0:.:0:.:0:0|32;1|3:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8514 chr21 45989416 GANGSTR_445981 GTGTGTGTGTGTGT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45989416;END=45989429;PERIOD=2;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:1:0:32.00|32.00:0|0:.:0:.:0:-2|1;0|43:-2|1;0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8515 chr21 45991688 GANGSTR_445982 ATAAATAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45991688;END=45991699;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8516 chr21 45992718 GANGSTR_445983 ACACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.98;INFRAME_UP=0.09;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=45992718;END=45992763;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:65:0:0:1:32.11|32.89:0|0:4.15:0:21:-0.18:-2|9;0|10:-2|8;0|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8517 chr21 45994294 GANGSTR_445984 CCTCCTCCTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=45994294;END=45994305;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:-31|1;0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8518 chr21 46001410 GANGSTR_445985 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46001410;END=46001421;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|42:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8519 chr21 46002875 GANGSTR_445986 TTTCTTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46002875;END=46002890;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8520 chr21 46003067 GANGSTR_445987 CTGAGCTGAGCTGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=46003067;END=46003081;PERIOD=5;NSKIP=0;NFILT=0;DP=36;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:36:0:0:0:18.00|18.00:0|0:.:0:.:0:0|22:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8521 chr21 46015661 GANGSTR_445988 ACATACATACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46015661;END=46015672;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8522 chr21 46020151 GANGSTR_445990 GGATGGATGGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46020151;END=46020162;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8523 chr21 46026999 GANGSTR_445991 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46026999;END=46027013;PERIOD=5;NSKIP=0;NFILT=0;DP=79;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:79:0:0:0:39.50|39.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8524 chr21 46033810 GANGSTR_445992 CCAGGCCAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46033810;END=46033819;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8525 chr21 46035632 GANGSTR_445993 TATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46035632;END=46035643;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|44:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8526 chr21 46036439 GANGSTR_445994 CCTCCTCCTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46036439;END=46036450;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:1:0:26.00|26.00:0|0:.:0:.:0:-3|1;0|40:-3|1;0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8527 chr21 46038354 GANGSTR_445995 ACAAACAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46038354;END=46038365;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|44:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8528 chr21 46044593 GANGSTR_445996 TGTTGTTGTTGTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46044593;END=46044607;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|49:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8529 chr21 46050827 GANGSTR_445997 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46050827;END=46050841;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|35;1|1:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8530 chr21 46051480 GANGSTR_445998 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=46051480;END=46051495;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:1:25.50|25.50:0|0:.:0:.:0:0|23:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8531 chr21 46051835 GANGSTR_445999 GGAGGAGGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46051835;END=46051846;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8532 chr21 46056102 GANGSTR_446000 GCTGAGCTGAGCTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46056102;END=46056116;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8533 chr21 46066914 GANGSTR_446001 CCTCCTCCTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46066914;END=46066925;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|40:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8534 chr21 46080005 GANGSTR_446002 AAAGAGAAAGAGAAAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46080005;END=46080022;PERIOD=6;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|35:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8535 chr21 46082059 GANGSTR_446003 ATTAAATTAAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.03;START=46082059;END=46082073;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:1:31.50|31.50:0|0:.:0:.:0:0|34;1|1:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8536 chr21 46084047 GANGSTR_446004 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46084047;END=46084058;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8537 chr21 46087985 GANGSTR_446005 AAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46087985;END=46087992;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8538 chr21 46089347 GANGSTR_446006 TAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46089347;END=46089354;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8539 chr21 46093177 GANGSTR_446007 GAAAGAAAGAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46093177;END=46093188;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8540 chr21 46093480 GANGSTR_446008 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46093480;END=46093491;PERIOD=3;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8541 chr21 46094649 GANGSTR_446009 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.91;INFRAME_UP=0.15;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=46094649;END=46094702;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4,-2;DP=54;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|-2:0.92:0.46:54:0:1:2:27.94|26.06:0|0:1.06:-0:15:0:-4|8;-2|5;-1|1;0|1:-4|7;-2|5;0|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8542 chr21 46097399 GANGSTR_446010 CTTGTTCTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46097399;END=46097410;PERIOD=6;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|42:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8543 chr21 46100101 GANGSTR_446011 CAACAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46100101;END=46100115;PERIOD=3;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|57:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8544 chr21 46110365 GANGSTR_446013 CAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46110365;END=46110380;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8545 chr21 46111030 GANGSTR_446014 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46111030;END=46111041;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8546 chr21 46112286 GANGSTR_446015 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46112286;END=46112297;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|55:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8547 chr21 46113754 GANGSTR_446016 AAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=46113754;END=46113761;PERIOD=4;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:0:38.00|38.00:0|0:.:0:.:0:0|62:0|60:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8548 chr21 46118397 GANGSTR_446017 CCCAGCCCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46118397;END=46118406;PERIOD=5;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8549 chr21 46119116 GANGSTR_446018 AATTAATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46119116;END=46119131;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|26:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8550 chr21 46128053 GANGSTR_446019 TGCATGCATGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=46128053;END=46128064;PERIOD=4;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8551 chr21 46129916 GANGSTR_446020 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46129916;END=46129927;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8552 chr21 46130324 GANGSTR_446021 TATGACCCCCACCCCCACCCCCACCCCC TGTGACCCCCACCCCCACCCCCACCCCC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=46130328;END=46130351;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=5;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:41:0:0:0:27.05|13.95:0|0:29.86:-1.39:35:0:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8553 chr21 46130857 GANGSTR_446022 TGTGTCTGTGTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=46130857;END=46130868;PERIOD=6;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:1:1:25.00|25.00:0|0:.:0:.:0:-1|1;0|35:-6|1;0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8554 chr21 46132748 GANGSTR_446023 GGAGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46132748;END=46132755;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8555 chr21 46134491 GANGSTR_446024 CTCTCTCTCTCTCTCT . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46134491;END=46134506;PERIOD=2;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:1:0:20.00|20.00:0|0:.:0:.:0:-2|1;0|28:-2|1;0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8556 chr21 46134692 GANGSTR_446025 AAGAAAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46134692;END=46134703;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8557 chr21 46141545 GANGSTR_446027 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46141545;END=46141556;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8558 chr21 46150410 GANGSTR_446028 TCTAAAGTCTAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46150410;END=46150423;PERIOD=7;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|29:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8559 chr21 46156474 GANGSTR_446029 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46156474;END=46156485;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:21.56|29.44:0|0:.:0:.:0:0|32:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8560 chr21 46157093 GANGSTR_446030 GGGGTGGGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=46157093;END=46157102;PERIOD=5;NSKIP=0;NFILT=0;DP=31;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:31:0:0:3:15.50|15.50:0|0:.:0:.:0:-25|1;0|20:0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8561 chr21 46166402 GANGSTR_446031 TGTTGTTGTTGTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46166402;END=46166416;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8562 chr21 46170359 GANGSTR_446032 CCAACCAACCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46170359;END=46170370;PERIOD=4;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8563 chr21 46172005 GANGSTR_446033 CCAGCCTCCCAGCCTCCCAGCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=46172005;END=46172028;PERIOD=8;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:0:19.50|19.50:0|0:.:0:.:0:0|21:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8564 chr21 46190970 GANGSTR_446034 AGGGAGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46190970;END=46190981;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8565 chr21 46204327 GANGSTR_446035 TTATTATTATTA TTATTA . . INFRAME_PGEOM=0.91;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46204327;END=46204338;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-6:1:0.5:50:0:0:0:24.51|25.49:0|0:47.13:-0:45:-0.26:-6|22;0|14:-6|22;0|14:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8566 chr21 46218074 GANGSTR_446036 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46218074;END=46218089;PERIOD=4;NSKIP=0;NFILT=0;DP=83;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:83:0:0:0:41.50|41.50:0|0:.:0:.:0:0|53:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8567 chr21 46222842 GANGSTR_446037 CCCTCCCTCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46222842;END=46222853;PERIOD=4;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:1:19.50|19.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8568 chr21 46223218 GANGSTR_446038 TCAAATCAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46223218;END=46223227;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8569 chr21 46225678 GANGSTR_446039 CAAGCAAGCAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46225678;END=46225689;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8570 chr21 46233300 GANGSTR_446040 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46233300;END=46233311;PERIOD=2;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8571 chr21 46240425 GANGSTR_446041 AAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46240425;END=46240434;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8572 chr21 46241538 GANGSTR_446042 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46241538;END=46241549;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:1:24.50|24.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8573 chr21 46248499 GANGSTR_446045 AGAAGAAGAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46248499;END=46248510;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:26.00|29.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8574 chr21 46249209 GANGSTR_446046 TTTGGTTTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46249209;END=46249218;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8575 chr21 46251074 GANGSTR_446047 AAACTAAACTAAACT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46251074;END=46251088;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8576 chr21 46251946 GANGSTR_446048 TTATTTTATTTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46251946;END=46251960;PERIOD=5;NSKIP=0;NFILT=0;DP=81;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:81:0:0:0:40.50|40.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8577 chr21 46259140 GANGSTR_446050 CAGCCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46259140;END=46259147;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8578 chr21 46267961 GANGSTR_446051 ATTTTTATTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46267961;END=46267972;PERIOD=6;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|38:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8579 chr21 46268986 GANGSTR_446052 GACAGACAGACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46268986;END=46268997;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8580 chr21 46271432 GANGSTR_446053 GGCTGGGCTGGGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46271432;END=46271446;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:23.58|33.42:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8581 chr21 46271571 GANGSTR_446054 TTCATTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46271571;END=46271582;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8582 chr21 46276194 GANGSTR_446055 GCAGCAGCAGCAGCAGCA . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46276194;END=46276211;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:1:0:23.50|23.50:0|0:.:0:.:0:-3|1;0|32:-3|1;0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8583 chr21 46280266 GANGSTR_446056 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46280266;END=46280285;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8584 chr21 46281631 GANGSTR_446057 CCTCCTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46281631;END=46281639;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8585 chr21 46281995 GANGSTR_446058 GTGTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46281995;END=46282008;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|39:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8586 chr21 46284303 GANGSTR_446059 GTTTTTGTTTTTGTTTTTGTTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46284303;END=46284326;PERIOD=6;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:0:38.50|38.50:0|0:.:0:.:0:0|37:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8587 chr21 46290730 GANGSTR_446060 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46290730;END=46290741;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|47:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8588 chr21 46293179 GANGSTR_446061 ACAAAGACAAAGACAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=46293179;END=46293196;PERIOD=6;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|21:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8589 chr21 46293340 GANGSTR_446062 ACCCCGACCCCGACCCCG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=46293340;END=46293357;PERIOD=6;NSKIP=0;NFILT=0;DP=34;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:34:0:0:0:17.00|17.00:0|0:.:0:.:0:-1|1;0|22:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8590 chr21 46295839 GANGSTR_446064 TCCTCCTCCTCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46295839;END=46295853;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8591 chr21 46301580 GANGSTR_446065 GGAGGGAGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46301580;END=46301591;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8592 chr21 46307403 GANGSTR_446066 CCTGGCCTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46307403;END=46307412;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8593 chr21 46315448 GANGSTR_446067 AAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46315448;END=46315462;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8594 chr21 46316950 GANGSTR_446068 CCCTGCCCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46316950;END=46316959;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8595 chr21 46322724 GANGSTR_446069 TGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46322724;END=46322737;PERIOD=2;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|37:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8596 chr21 46324067 GANGSTR_446070 AGGGAGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46324067;END=46324078;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:2:34.00|34.00:0|0:.:0:.:0:0|44:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8597 chr21 46324815 GANGSTR_446071 CCTGGCCCTGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46324815;END=46324826;PERIOD=6;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8598 chr21 46325060 GANGSTR_446072 CCCTTCCCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46325060;END=46325069;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8599 chr21 46328316 GANGSTR_446073 TATTATTATTATTATTATTAT TAATATTATTATTATTATTAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46328316;END=46328336;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:58:0:0:0:29.00|29.00:0|0:16.22:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8600 chr21 46330873 GANGSTR_446074 AGGGAGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46330873;END=46330884;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8601 chr21 46330975 GANGSTR_446075 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46330975;END=46330986;PERIOD=2;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|45:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8602 chr21 46335833 GANGSTR_446076 TTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46335833;END=46335848;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8603 chr21 46340060 GANGSTR_446077 CCACACCACACCACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46340060;END=46340074;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8604 chr21 46340153 GANGSTR_446078 GCACACACACACA GTACACACACACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46340154;END=46340165;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:56:0:0:0:26.48|29.52:0|0:77.16:-0.11:49:0:0|43:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8605 chr21 46341410 GANGSTR_446079 GGATGGATGGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46341410;END=46341421;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8606 chr21 46341615 GANGSTR_446080 TTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46341615;END=46341630;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:32.00|25.00:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8607 chr21 46343380 GANGSTR_446081 GGGTTGGGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46343380;END=46343389;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8608 chr21 46345189 GANGSTR_446082 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46345189;END=46345200;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8609 chr21 46345836 GANGSTR_446084 ACAACAACAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46345836;END=46345847;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|39:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8610 chr21 46346047 GANGSTR_446085 AATTAATTAATTAATT AATAAATAAATAAATT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=46346047;END=46346062;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:43:0:0:0:21.50|21.50:0|0:11.74:0:.:0:-12|3;0|22:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8611 chr21 46346744 GANGSTR_446086 GGTTGGTTGGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46346744;END=46346755;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8612 chr21 46354772 GANGSTR_446088 CTCCCTCCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46354772;END=46354783;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8613 chr21 46354851 GANGSTR_446089 GGCAGGCAGGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46354851;END=46354862;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8614 chr21 46369217 GANGSTR_446090 TGGGCCCTGGGCCCTGGGCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46369217;END=46369237;PERIOD=7;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:1:25.50|25.50:0|0:.:0:.:0:-5|1;0|26:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8615 chr21 46369431 GANGSTR_446091 GCAGCAGCAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46369431;END=46369442;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8616 chr21 46369584 GANGSTR_446092 CTGCTGCTGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46369584;END=46369595;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|33:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8617 chr21 46371017 GANGSTR_446093 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46371017;END=46371028;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|49:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8618 chr21 46372010 GANGSTR_446094 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46372010;END=46372021;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|51:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8619 chr21 46384417 GANGSTR_446095 TTGCTTTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46384417;END=46384426;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:1:22.00|22.00:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8620 chr21 46385278 GANGSTR_446096 CCTCCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46385278;END=46385285;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:2:21.00|21.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8621 chr21 46386382 GANGSTR_446097 TTAAATTAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46386382;END=46386391;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8622 chr21 46387975 GANGSTR_446098 GGGCCTGGGCCTGGGCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46387975;END=46387992;PERIOD=6;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:1:22.50|22.50:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8623 chr21 46396191 GANGSTR_446099 GGCTCTCGGCTCTCGGCTCTCGGCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=46396191;END=46396218;PERIOD=7;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|19:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8624 chr21 46403561 GANGSTR_446100 CCAGCCAGCCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46403561;END=46403572;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8625 chr21 46421847 GANGSTR_446101 CAGCCCCTGCCCCTGCCCCTGCCCCT CTGCCCCTGCCCCTGCCCCTGCCCCT,CTGCCCCTGCCCCTGCCCCTGCCCCCT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.09;OUTFRAME_DOWN=0.04;START=46421849;END=46421872;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=0,1;DP=32;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:0|1:0.9:0.45:32:0:0:0:27.41|4.59:0|0:0.96:-5.81:25:0:0|18;1|1:0|19;1|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8626 chr21 46434419 GANGSTR_446102 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46434419;END=46434430;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8627 chr21 46435341 GANGSTR_446103 AGGGGAGGGGAGGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46435341;END=46435355;PERIOD=5;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:1:18.50|18.50:0|0:.:0:.:0:0|25:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8628 chr21 46436687 GANGSTR_446104 GTCGGGGAGTCGGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46436687;END=46436702;PERIOD=8;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:1:33.50|33.50:0|0:.:0:.:0:0|45:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8629 chr21 46437780 GANGSTR_446105 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46437780;END=46437789;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=1;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:1:3:27.50|27.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8630 chr21 46444187 GANGSTR_446107 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46444187;END=46444202;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8631 chr21 46452353 GANGSTR_446108 GGGGCGGGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46452353;END=46452362;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:2:28.50|28.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8632 chr21 46453791 GANGSTR_446109 CCTGGCCCTGGCCCTGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46453791;END=46453808;PERIOD=6;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8633 chr21 46456389 GANGSTR_446110 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46456389;END=46456404;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|35:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8634 chr21 46460237 GANGSTR_446111 TGCTGCTGCTGCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46460237;END=46460251;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:1:26.50|26.50:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8635 chr21 46461304 GANGSTR_446112 GAAGAAGAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46461304;END=46461315;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|36:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8636 chr21 46461894 GANGSTR_446113 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46461894;END=46461905;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|35:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8637 chr21 46463205 GANGSTR_446114 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46463205;END=46463216;PERIOD=2;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:1:21.50|21.50:0|0:.:0:.:0:0|36:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8638 chr21 46465846 GANGSTR_446115 AACAAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46465846;END=46465855;PERIOD=5;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8639 chr21 46466343 GANGSTR_446116 GGGAGGGAGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46466343;END=46466354;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|44:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8640 chr21 46467068 GANGSTR_446117 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46467068;END=46467079;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8641 chr21 46475889 GANGSTR_446118 TCCCTCCCTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46475889;END=46475900;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8642 chr21 46477008 GANGSTR_446119 GACAGACAGACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46477008;END=46477019;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8643 chr21 46477312 GANGSTR_446120 AAAGAAAAGAAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46477312;END=46477326;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8644 chr21 46492533 GANGSTR_446122 GGTGGGTGGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46492533;END=46492544;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8645 chr21 46493661 GANGSTR_446123 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46493661;END=46493676;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8646 chr21 46500574 GANGSTR_446125 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46500574;END=46500585;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8647 chr21 46501421 GANGSTR_446126 TAGGCTAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46501421;END=46501430;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:1:30.00|30.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8648 chr21 46505507 GANGSTR_446127 TATGTATGTATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46505507;END=46505518;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8649 chr21 46506248 GANGSTR_446128 GTTTTGTTTTGTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46506248;END=46506262;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8650 chr21 46508623 GANGSTR_446129 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46508623;END=46508634;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8651 chr21 46512969 GANGSTR_446130 ACCCCACCCCACCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46512969;END=46512983;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8652 chr21 46513827 GANGSTR_446131 AAAAAATAAAAT ATAAAATAAAAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46513829;END=46513838;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=6;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:55:0:0:0:27.50|27.50:0|0:13.83:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8653 chr21 46520922 GANGSTR_446132 GCAGCAGCAGCAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46520922;END=46520936;PERIOD=3;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8654 chr21 46521807 GANGSTR_446133 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46521807;END=46521818;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8655 chr21 46524995 GANGSTR_446134 TTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTT TTGTTTTGTTTTGTTTTGTTTTGTTTTGTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46524995;END=46525029;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-5;DP=72;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-5|-5:1:1:72:0:0:0:36.00|36.00:0|0:9.35:0:.:0:-5|29:-5|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8656 chr21 46525604 GANGSTR_446135 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46525604;END=46525615;PERIOD=2;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|54:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8657 chr21 46530782 GANGSTR_446136 GTGCTGTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46530782;END=46530791;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8658 chr21 46531190 GANGSTR_446137 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46531190;END=46531201;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|50:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8659 chr21 46536834 GANGSTR_446138 TTTTCTTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=46536834;END=46536843;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:-1|1;0|40:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8660 chr21 46539007 GANGSTR_446139 TTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46539007;END=46539018;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8661 chr21 46552912 GANGSTR_446140 CTTCCTTCCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46552912;END=46552923;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8662 chr21 46554430 GANGSTR_446141 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46554430;END=46554441;PERIOD=2;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8663 chr21 46558374 GANGSTR_446142 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46558374;END=46558385;PERIOD=3;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|49:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8664 chr21 46562062 GANGSTR_446143 TGCTTGCTTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46562062;END=46562073;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8665 chr21 46570191 GANGSTR_446144 ACAAACAAACAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46570191;END=46570206;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8666 chr21 46570941 GANGSTR_446145 AGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46570941;END=46570952;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8667 chr21 46580497 GANGSTR_446146 TTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46580497;END=46580508;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8668 chr21 46582027 GANGSTR_446147 AGGAGAGAAGGAGAGA AGGAGAGAGGAGAGA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.09;START=46582027;END=46582042;PERIOD=8;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:42:0:0:0:35.51|6.49:0|0:4.16:-6.88:33:0:-1|1;0|18:-1|1;0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8669 chr21 46594598 GANGSTR_446149 ATACATACATACATACATACATACATACATACATACATACATAC ATACATACATACATACATACATACATACATACATACATAC . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46594598;END=46594641;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=79;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:79:0:1:1:39.50|39.50:0|0:12.14:0:.:0:-8|1;-4|36:-8|1;-4|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8670 chr21 46597173 GANGSTR_446150 AGGGAGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46597173;END=46597184;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8671 chr21 46606010 GANGSTR_446151 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46606010;END=46606021;PERIOD=2;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|55:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8672 chr21 46607625 GANGSTR_446152 TTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46607625;END=46607636;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8673 chr21 46608739 GANGSTR_446153 TCCATTTCCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46608739;END=46608750;PERIOD=6;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|36:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8674 chr21 46613575 GANGSTR_446155 GAATGAATGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46613575;END=46613586;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|55:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8675 chr21 46621471 GANGSTR_446156 TTCATTTTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46621471;END=46621482;PERIOD=6;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:0:38.50|38.50:0|0:.:0:.:0:0|48:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8676 chr21 46625178 GANGSTR_446157 AAAGAAAGAAAGAAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=46625178;END=46625201;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|22:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8677 chr21 46626875 GANGSTR_446158 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46626875;END=46626886;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8678 chr21 46628645 GANGSTR_446159 GTGTGTGTGTGTGTGT . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46628645;END=46628660;PERIOD=2;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:1:0:22.50|22.50:0|0:.:0:.:0:-2|1;0|31:-2|1;0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8679 chr21 46635512 GANGSTR_446160 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46635512;END=46635523;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8680 chr21 46644986 GANGSTR_446161 TTGTTTTGTTTTGTTTTGTTTTGTT TTGTTTTGTTTTGTTTTGTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.04;START=46644986;END=46645010;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=-5;DP=83;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-5|-5:1:1:83:0:0:1:41.50|41.50:0|0:16.9:0:.:0:-6|1;-5|49:-5|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8681 chr21 46649764 GANGSTR_446162 ACACACACACACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46649764;END=46649785;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:28.96|25.04:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8682 chr21 46662213 GANGSTR_446163 TTTGTTTTGTTTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46662213;END=46662227;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:30.50|27.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8683 chr21 46667876 GANGSTR_446164 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46667876;END=46667887;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:27.50|28.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8684 chr21 46668910 GANGSTR_446165 GCTGCTGCTGCTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46668910;END=46668924;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8685 chr21 46675398 GANGSTR_446166 CCTGCCTGCCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46675398;END=46675409;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8686 chr21 46675889 GANGSTR_446167 GTGGGTGGGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46675889;END=46675900;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8687 chr21 46691063 GANGSTR_446168 AACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46691063;END=46691074;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:2:25.50|25.50:0|0:.:0:.:0:0|39:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8688 chr21 46694137 GANGSTR_446169 CAAACAAACAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46694137;END=46694156;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:1:35.50|35.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8689 chr21 46697090 GANGSTR_446170 CGCCCGCCCGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46697090;END=46697101;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8690 chr21 46701982 GANGSTR_446171 CCCAGCCCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46701982;END=46701991;PERIOD=5;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|26:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8691 chr21 46707114 GANGSTR_446172 CCCTGCCCCTGCCCCTGC . . . INFRAME_PGEOM=1;INFRAME_UP=0.13;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=46707114;END=46707131;PERIOD=6;NSKIP=0;NFILT=0;DP=15;DSNP=0;DSTUTTER=3;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:15:0:3:0:7.50|7.50:0|0:.:0:.:0:0|10;6|1:0|8;6|2:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8692 chr21 46708627 GANGSTR_446174 CCGCCGCCGCCG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46708627;END=46708638;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8693 chr21 46714998 GANGSTR_446175 TTCATTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46714998;END=46715005;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|46:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8694 chr21 46719333 GANGSTR_446176 TTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46719333;END=46719340;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8695 chr21 46720423 GANGSTR_446177 AGAGGTGAGAGGTGAGAGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46720423;END=46720443;PERIOD=7;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|29:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8696 chr21 46728720 GANGSTR_446178 CTGCCTGCCTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46728720;END=46728731;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8697 chr21 46728942 GANGSTR_446179 GGTGAGGTGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46728942;END=46728951;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8698 chr21 46731132 GANGSTR_446180 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46731132;END=46731143;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8699 chr21 46731688 GANGSTR_446181 ACACACACACACACACACACACACACACACACAC . . . INFRAME_PGEOM=0.82;INFRAME_UP=0.07;INFRAME_DOWN=0.1;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46731688;END=46731721;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=5;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:5:1:27.00|27.00:0|0:.:0:.:0:-8|1;-4|1;-2|2;0|23;2|1:-4|1;-2|2;0|22;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8700 chr21 46745234 GANGSTR_446182 GGCAGGCAGGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46745234;END=46745245;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8701 chr21 46745423 GANGSTR_446183 GGGAGGGAGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46745423;END=46745434;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8702 chr21 46749313 GANGSTR_446184 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46749313;END=46749324;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8703 chr21 46753958 GANGSTR_446185 TGAGTGAGTGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46753958;END=46753969;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8704 chr21 46758986 GANGSTR_446186 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46758986;END=46758997;PERIOD=4;NSKIP=0;NFILT=0;DP=73;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:73:0:0:0:36.50|36.50:0|0:.:0:.:0:0|53:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8705 chr21 46763906 GANGSTR_446187 AAATAAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=46763906;END=46763929;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8706 chr21 46768017 GANGSTR_446188 GCAGCAGCAGCAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46768017;END=46768031;PERIOD=3;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|30:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8707 chr21 46768804 GANGSTR_446189 AGGCCAGGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46768804;END=46768813;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:1:23.00|23.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8708 chr21 46769901 GANGSTR_446190 GTGCGTGTGCGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46769901;END=46769912;PERIOD=6;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|47:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8709 chr21 46770439 GANGSTR_446191 CACACCACACCACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46770439;END=46770453;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8710 chr21 46770722 GANGSTR_446192 CACACACACACACACACACA CACACACACACACACA,CACACACACACACACACA . . INFRAME_PGEOM=0.97;INFRAME_UP=0.05;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46770722;END=46770741;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4,-2;DP=69;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-4|-2:1:0.5:69:0:1:0:35.54|33.46:0|0:15.99:-0.05:48:0:-6|1;-4|24;-2|22:-4|20;-2|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8711 chr21 46782350 GANGSTR_446193 GAGAGAGAGAGA . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46782350;END=46782361;PERIOD=2;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:1:0:23.00|23.00:0|0:.:0:.:0:-2|1;0|28:-2|1;0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8712 chr21 46782992 GANGSTR_446194 GTCTGTGGAGTCTGTGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46782992;END=46783009;PERIOD=9;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|31:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8713 chr21 46786370 GANGSTR_446195 AACAACAACAACAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46786370;END=46786384;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|46:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8714 chr21 46787089 GANGSTR_446196 CAGTGCAGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=46787089;END=46787098;PERIOD=5;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|22:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8715 chr21 46794753 GANGSTR_446197 GGGGAGGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=46794753;END=46794762;PERIOD=5;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|21:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8716 chr21 46795230 GANGSTR_446198 GGGAGGGAGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=46795230;END=46795241;PERIOD=4;NSKIP=0;NFILT=0;DP=28;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:28:0:0:0:14.00|14.00:0|0:.:0:.:0:0|21:0|21:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8717 chr21 46795799 GANGSTR_446199 GAAGAGAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46795799;END=46795808;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8718 chr21 46797550 GANGSTR_446201 ATTTAAATTTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46797550;END=46797561;PERIOD=6;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:1:33.50|33.50:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8719 chr21 46801843 GANGSTR_446203 GGTGGGTGGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46801843;END=46801854;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8720 chr21 46803063 GANGSTR_446204 GGCTGGGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46803063;END=46803072;PERIOD=5;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:0:19.50|19.50:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8721 chr21 46804482 GANGSTR_446205 AATAAAATAAAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46804482;END=46804496;PERIOD=5;NSKIP=0;NFILT=0;DP=72;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:72:0:1:1:36.00|36.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8722 chr21 46805383 GANGSTR_446206 GAGGGAGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46805383;END=46805394;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8723 chr21 46810847 GANGSTR_446207 TGGGTGGGTGGG TGGGTGGGGGGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46810847;END=46810858;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:37:0:0:1:24.36|12.64:0|0:7.23:-1.1:33:-1.76:0|27:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8724 chr21 46815310 GANGSTR_446208 AAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46815310;END=46815324;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8725 chr21 46815681 GANGSTR_446209 TGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=1;INFRAME_UP=0.06;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46815681;END=46815698;PERIOD=2;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:1:0:19.50|19.50:0|0:.:0:.:0:0|30;2|1:0|28;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8726 chr21 46816302 GANGSTR_446210 ATGCATGCATGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46816302;END=46816313;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8727 chr21 46818353 GANGSTR_446211 TCTTTCTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46818353;END=46818364;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.57|35.43:0|0:.:0:.:0:0|51:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8728 chr21 46818745 GANGSTR_446212 ACAAAACAAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46818745;END=46818759;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:31.00|33.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8729 chr21 46819577 GANGSTR_446213 TCTACATCTACATCCA TCTACATCTACATCCT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46819577;END=46819588;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:62:0:0:0:26.07|35.93:0|0:79.51:-0.63:58:0:0|49:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8730 chr21 46823303 GANGSTR_446214 TGGGTTGGGTTGGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46823303;END=46823317;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8731 chr21 46825314 GANGSTR_446217 GGCGGCGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46825314;END=46825322;PERIOD=3;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8732 chr21 46826278 GANGSTR_446218 GGGAGGGAGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46826278;END=46826289;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:1:34.50|34.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8733 chr21 46828249 GANGSTR_446219 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46828249;END=46828260;PERIOD=2;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|38:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8734 chr21 46828950 GANGSTR_446220 TGGCTGTGGCTG TGGCTGTGGCTGAGCACAGCCCCCAGGCTGGGGCTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46828950;END=46828961;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=24;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|24:1:0.5:60:0:0:0:28.49|31.51:0|0:127.84:-0.11:51:0:-24|8;-15|1;-7|1;0|23;1|2;24|12:0|23;24|13:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8735 chr21 46836715 GANGSTR_446221 CCCCAGCCCCAGCGCCT CCCCAGCCCCAGCGCCC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46836715;END=46836726;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:45:0:0:0:22.50|22.50:0|0:12.33:0:.:0:0|34:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8736 chr21 46845194 GANGSTR_446222 GTGTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46845194;END=46845207;PERIOD=2;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:25.60|38.40:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8737 chr21 46848805 GANGSTR_446223 CTTTCTTTCTTTTCT CTTTCTTTCTTTTC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.97;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46848805;END=46848816;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-1;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=4;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-1:1:0.5:71:0:0:2:36.50|34.50:0|0:58.28:-0.05:52:-0.24:-1|18;0|30:-1|18;0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8738 chr21 46851786 GANGSTR_446224 GGGTGGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46851786;END=46851793;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8739 chr21 46852151 GANGSTR_446225 GCTGGGGCTGGGGCTGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46852151;END=46852168;PERIOD=6;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:1:0:25.50|25.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8740 chr21 46856706 GANGSTR_446227 GGAGGGAGGGAG GGAGGGAGGGGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46856706;END=46856717;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:42:0:0:2:28.95|13.05:0|0:8.26:-1.86:38:-3.13:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8741 chr21 46860069 GANGSTR_446229 GGCTGTGGCTGTGGCTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46860069;END=46860086;PERIOD=6;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8742 chr21 46862597 GANGSTR_446230 GGTGGTGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=46862597;END=46862605;PERIOD=3;NSKIP=0;NFILT=0;DP=27;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:27:0:0:2:13.50|13.50:0|0:.:0:.:0:0|18:0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8743 chr21 46862708 GANGSTR_446231 GGTGGTGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=46862708;END=46862716;PERIOD=3;NSKIP=0;NFILT=0;DP=26;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:26:0:0:1:13.00|13.00:0|0:.:0:.:0:0|19:0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8744 chr21 46865034 GANGSTR_446232 CCCTCCCTCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46865034;END=46865045;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8745 chr21 46867110 GANGSTR_446233 TATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46867110;END=46867123;PERIOD=2;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8746 chr21 46868402 GANGSTR_446234 CATGCATGCATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46868402;END=46868413;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:29.50|30.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8747 chr21 46873964 GANGSTR_446236 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46873964;END=46873975;PERIOD=3;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8748 chr21 46878017 GANGSTR_446237 AGGGAGGGAGGGAGGGAGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=46878017;END=46878040;PERIOD=4;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:5:19.00|19.00:0|0:.:0:.:0:0|20:0|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8749 chr21 46879203 GANGSTR_446238 AGGAGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46879203;END=46879214;PERIOD=3;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8750 chr21 46883819 GANGSTR_446239 AAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46883819;END=46883828;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:2:30.00|30.00:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8751 chr21 46886096 GANGSTR_446240 AGGGGAGGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46886096;END=46886105;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:3:23.50|23.50:0|0:.:0:.:0:-2|1;0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8752 chr21 46888745 GANGSTR_446241 TGGGGTGGGGTGGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46888745;END=46888759;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:1:29.00|29.00:0|0:.:0:.:0:-1|1;0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8753 chr21 46893228 GANGSTR_446243 GTGAGTGAGTGA . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46893228;END=46893239;PERIOD=4;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:1:0:25.50|25.50:0|0:.:0:.:0:-4|1;0|38:-4|1;0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8754 chr21 46894469 GANGSTR_446244 TGTGTCTGTGTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46894469;END=46894480;PERIOD=6;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:1:26.50|26.50:0|0:.:0:.:0:-2|1;0|33:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8755 chr21 46896689 GANGSTR_446245 GTGTGGTGTGGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46896689;END=46896703;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:26.50|33.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8756 chr21 46899449 GANGSTR_446246 ACTCACACATCACACA ATTCACACATCACACA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46899451;END=46899464;PERIOD=7;NSKIP=0;NFILT=0;BPDIFFS=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:57:0:0:1:29.00|28.00:0|0:85.9:0:47:0:-12|1;0|33:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8757 chr21 46899516 GANGSTR_446247 CACACACACACACACAT CACACACACACACAC . . INFRAME_PGEOM=0.98;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46899516;END=46899531;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=47;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-2:1:0.5:47:0:1:0:23.57|23.43:0|0:35.08:0:38:-0.48:-2|18;0|17:-2|17;0|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8758 chr21 46904403 GANGSTR_446248 CACACACACACAT CACACACACACAC . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46904403;END=46904414;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=60;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:60:0:1:0:31.43|28.57:0|0:94.78:-0.1:55:-0.55:-2|1;0|49:-2|1;0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8759 chr21 46905961 GANGSTR_446249 CCTCCCTCCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=46905961;END=46905972;PERIOD=4;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|22:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8760 chr21 46914159 GANGSTR_446250 CCCTCCACCCTCCACCCTCCA CCCTCCACCCTCCACCCTCCACCCTCCA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.04;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46914159;END=46914179;PERIOD=7;NSKIP=0;NFILT=0;BPDIFFS=7;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|7:1:0.5:51:0:0:0:30.55|20.45:0|0:6.74:-1.33:37:-0.14:0|21;7|11:0|22;7|11:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8761 chr21 46920530 GANGSTR_446251 GTGTGTGTGTGT GTGTGT . . INFRAME_PGEOM=0.65;INFRAME_UP=0.04;INFRAME_DOWN=0.22;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=46920530;END=46920541;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-6;DP=163;DSNP=0;DSTUTTER=26;DFLANKINDEL=22;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-6:1:0.5:163:0:26:22:99.54|63.46:0|0:13.99:-4.8:107:-0.58:-38|1;-36|1;-32|3;-25|1;-17|1;-15|1;-10|1;-6|2;-4|7;-2|16;0|86:-6|25;-4|1;-2|8;0|36;2|2:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8762 chr21 46920946 GANGSTR_446254 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.72;INFRAME_UP=0.02;INFRAME_DOWN=0.11;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46920946;END=46920957;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=14;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:14:3:19.73|37.27:0|0:.:0:.:0:-28|1;-18|1;-4|5;-2|2;0|37:0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8763 chr21 46921022 GANGSTR_446255 GTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGT . . INFRAME_PGEOM=0.97;INFRAME_UP=0.06;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46921022;END=46921039;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:50:0:0:1:24.64|25.36:0|0:13.71:-0:37:0:-34|8;-3|1;0|18;2|5:0|16;2|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8764 chr21 46924426 GANGSTR_446256 GGCCCCCCAGGCCCCCCA GGCCCCCCA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=46924426;END=46924443;PERIOD=9;NSKIP=0;NFILT=0;BPDIFFS=-9;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=6;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-9|-9:1:1:40:0:0:0:20.00|20.00:0|0:8.81:0:.:0:-9|24:-9|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8765 chr21 46924740 GANGSTR_446257 GGTCAGGTCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46924740;END=46924749;PERIOD=5;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.91|23.09:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8766 chr21 46925141 GANGSTR_446258 GGCCCCCCAGGCCCCCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=46925141;END=46925158;PERIOD=9;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=6;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|22:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8767 chr21 46925683 GANGSTR_446259 TTCCTTCCTTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46925683;END=46925694;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:3:27.00|27.00:0|0:.:0:.:0:0|36:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8768 chr21 46928092 GANGSTR_446260 GATGGATGGATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46928092;END=46928103;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8769 chr21 46931190 GANGSTR_446261 GGCGGGCGGGCG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46931190;END=46931201;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8770 chr21 46933979 GANGSTR_446262 AGGCAGGCAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46933979;END=46933990;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8771 chr21 46935755 GANGSTR_446263 CGGGGCCGGGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46935755;END=46935766;PERIOD=6;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:1:29.50|29.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8772 chr21 46940859 GANGSTR_446264 AGGAGGAGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46940859;END=46940870;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|38:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8773 chr21 46948013 GANGSTR_446265 GGCAGGCAGGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46948013;END=46948024;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|43:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8774 chr21 46948358 GANGSTR_446266 GGCCGGCCGGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46948358;END=46948369;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8775 chr21 46949299 GANGSTR_446267 GGAGGGAGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=46949299;END=46949310;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8776 chr21 46958830 GANGSTR_446269 AGCAGCAGCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46958830;END=46958841;PERIOD=3;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8777 chr21 46960939 GANGSTR_446270 AAGAAGAAGAAG AAGAAGAAGAAGAAGAAG . . INFRAME_PGEOM=0.91;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46960939;END=46960950;PERIOD=3;NSKIP=0;NFILT=0;BPDIFFS=6;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|6:1:0.5:63:0:0:0:31.03|31.97:0|0:48.75:0:49:-0.25:-3|1;0|26;2|4;6|16:0|23;6|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8778 chr21 46968664 GANGSTR_446271 TAAATAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46968664;END=46968679;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8779 chr21 46971204 GANGSTR_446272 AATTAATTAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46971204;END=46971215;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|38:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8780 chr21 46972143 GANGSTR_446273 GCTGCTGCTGCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46972143;END=46972154;PERIOD=3;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8781 chr21 46975547 GANGSTR_446274 TCAGGAGGGCGGGGCGGGGCGGGGCG TGGGGGGGGCGGGGGGGGGGGGGGCG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=46975553;END=46975572;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=0;DP=38;DSNP=0;DSTUTTER=1;DFLANKINDEL=2;AN=2;REFAC=1;AC=1;HRUN=4;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:38:0:1:2:32.96|5.04:0|0:13.88:-5.71:36:-3.23:-38|1;0|27:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8782 chr21 46987905 GANGSTR_446275 ACTCACTCACTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=46987905;END=46987916;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|43:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8783 chr21 47001681 GANGSTR_446276 CAGCCCAGCCCAGCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47001681;END=47001695;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8784 chr21 47003471 GANGSTR_446277 TACATACATACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47003471;END=47003482;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8785 chr21 47005466 GANGSTR_446278 GAATGAATGAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47005466;END=47005477;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8786 chr21 47011599 GANGSTR_446280 CACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47011599;END=47011610;PERIOD=2;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|37:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8787 chr21 47014830 GANGSTR_446281 CCTGCCTGCCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47014830;END=47014841;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:3:24.00|24.00:0|0:.:0:.:0:0|35:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8788 chr21 47017336 GANGSTR_446282 TTTATTTATTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47017336;END=47017363;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.50|32.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8789 chr21 47018355 GANGSTR_446283 CCTGCCTGCCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47018355;END=47018366;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:2:26.50|26.50:0|0:.:0:.:0:0|42;3|1:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8790 chr21 47031148 GANGSTR_446285 TAATTTATTTATTT TTATTTATTTATTT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47031150;END=47031161;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:70:0:0:1:35.00|35.00:0|0:17.75:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8791 chr21 47034878 GANGSTR_446286 AAAAGAAAAGAAAAGAAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47034878;END=47034902;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8792 chr21 47041839 GANGSTR_446287 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47041839;END=47041850;PERIOD=2;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:1:33.50|33.50:0|0:.:0:.:0:0|59:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8793 chr21 47045705 GANGSTR_446288 AAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47045705;END=47045712;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8794 chr21 47048787 GANGSTR_446289 TCTTTCTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47048787;END=47048798;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:1:24.50|24.50:0|0:.:0:.:0:-24|1;0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8795 chr21 47058850 GANGSTR_446290 GGAGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47058850;END=47058857;PERIOD=4;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8796 chr21 47062181 GANGSTR_446291 GGCGGGCGGGCG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=47062181;END=47062192;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:2:22.00|22.00:0|0:.:0:.:0:0|28:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8797 chr21 47062885 GANGSTR_446292 GCCCGCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=47062885;END=47062892;PERIOD=4;NSKIP=0;NFILT=0;DP=15;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:15:0:0:0:7.50|7.50:0|0:.:0:.:0:0|12:0|12:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8798 chr21 47076588 GANGSTR_446294 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47076588;END=47076599;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|56:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8799 chr21 47076740 GANGSTR_446295 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47076740;END=47076751;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|27:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8800 chr21 47080962 GANGSTR_446296 ATATATATATATAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47080962;END=47080975;PERIOD=2;NSKIP=0;NFILT=0;DP=77;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:77:0:0:2:38.50|38.50:0|0:.:0:.:0:0|56:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8801 chr21 47081613 GANGSTR_446297 TTCTATTTCTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47081613;END=47081624;PERIOD=6;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|33:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8802 chr21 47083077 GANGSTR_446298 CTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCT . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47083077;END=47083096;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=66;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:66:0:1:0:33.00|33.00:0|0:12.05:0:.:0:-4|1;-2|42:-4|1;-2|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8803 chr21 47087735 GANGSTR_446299 TTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47087735;END=47087749;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:2:29.00|29.00:0|0:.:0:.:0:0|40:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8804 chr21 47089041 GANGSTR_446300 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47089041;END=47089052;PERIOD=4;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|52:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8805 chr21 47089148 GANGSTR_446301 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47089148;END=47089162;PERIOD=5;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8806 chr21 47101749 GANGSTR_446303 ATGGATGGATGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47101749;END=47101760;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|49:0|48:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8807 chr21 47102934 GANGSTR_446304 AAACAAAACAAAACAAAACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47102934;END=47102953;PERIOD=5;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|38:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8808 chr21 47104152 GANGSTR_446305 CAAACAAACAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47104152;END=47104163;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8809 chr21 47105790 GANGSTR_446306 AAAACAAAACAAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47105790;END=47105809;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:30.50|30.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8810 chr21 47109141 GANGSTR_446307 TAGGTAGGTAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47109141;END=47109152;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8811 chr21 47114509 GANGSTR_446308 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47114509;END=47114520;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|45:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8812 chr21 47121457 GANGSTR_446309 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47121457;END=47121468;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8813 chr21 47130063 GANGSTR_446310 TTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47130063;END=47130077;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|43:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8814 chr21 47130899 GANGSTR_446311 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47130899;END=47130910;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|36:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8815 chr21 47134350 GANGSTR_446312 ACACACACACACACAC ACACACACACACACACAC . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47134350;END=47134365;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=2;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|2:1:0.5:54:0:0:0:30.22|23.78:0|0:15.08:-0.52:46:-0.64:-2|1;0|26;2|17:0|26;2|17:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8816 chr21 47135897 GANGSTR_446313 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47135897;END=47135908;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8817 chr21 47148787 GANGSTR_446315 TATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47148787;END=47148802;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8818 chr21 47152472 GANGSTR_446316 TTATTTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47152472;END=47152491;PERIOD=4;NSKIP=0;NFILT=0;DP=93;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:93:0:0:0:46.50|46.50:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8819 chr21 47153195 GANGSTR_446317 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47153195;END=47153206;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8820 chr21 47154805 GANGSTR_446318 CTGTCTGTCTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47154805;END=47154816;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8821 chr21 47171909 GANGSTR_446319 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47171909;END=47171920;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:1:22.50|22.50:0|0:.:0:.:0:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8822 chr21 47179213 GANGSTR_446320 TTGTTGTTGTTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47179213;END=47179227;PERIOD=3;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8823 chr21 47181201 GANGSTR_446321 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47181201;END=47181212;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8824 chr21 47182236 GANGSTR_446322 GAGAGAGAGAGAGAGAGA . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47182236;END=47182253;PERIOD=2;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:1:0:26.00|26.00:0|0:.:0:.:0:-2|1;0|31:-2|1;0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8825 chr21 47190443 GANGSTR_446323 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47190443;END=47190454;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|46:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8826 chr21 47196345 GANGSTR_446324 TCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47196345;END=47196356;PERIOD=2;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|36:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8827 chr21 47196471 GANGSTR_446325 TATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47196471;END=47196484;PERIOD=2;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:1:0:21.50|21.50:0|0:.:0:.:0:-2|1;0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8828 chr21 47200570 GANGSTR_446326 ACAGCACAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47200570;END=47200579;PERIOD=5;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8829 chr21 47200709 GANGSTR_446327 AGAGAGAGAGAGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47200709;END=47200722;PERIOD=2;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|30:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8830 chr21 47206049 GANGSTR_446328 AATAAATAAATAAATAAATA AAATAAATAAATAAATAAATA . . INFRAME_PGEOM=0.96;INFRAME_UP=0.24;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=47206049;END=47206068;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=1;DP=57;DSNP=0;DSTUTTER=8;DFLANKINDEL=4;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|1:0.99:0.5:57:0:8:4:43.27|13.73:0|0:2.21:-5.61:39:-1.33:-1|1;0|18;1|1;4|6:0|12;1|4;4|7:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8831 chr21 47210236 GANGSTR_446329 AGGTGAGGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47210236;END=47210245;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8832 chr21 47217117 GANGSTR_446330 GATGGATGGATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47217117;END=47217128;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8833 chr21 47219288 GANGSTR_446331 GAGAGAGAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47219288;END=47219299;PERIOD=2;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8834 chr21 47222509 GANGSTR_446332 GGAGGAGGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47222509;END=47222520;PERIOD=3;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:0:0:18.50|18.50:0|0:.:0:.:0:0|28:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8835 chr21 47237936 GANGSTR_446333 ATTATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47237936;END=47237950;PERIOD=3;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8836 chr21 47246560 GANGSTR_446334 GCCAGCCAGCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47246560;END=47246571;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8837 chr21 47251618 GANGSTR_446335 AGTTAGTTAGTTAGTT AGTTAGTTAGTTAGTTAGTT . . INFRAME_PGEOM=0.98;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47251618;END=47251633;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=4;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=2;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:59:0:0:0:28.46|30.54:0|0:12.44:-0.06:40:-0:0|18;4|18:0|17;4|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8838 chr21 47253746 GANGSTR_446336 CCTGCCTGCCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47253746;END=47253757;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8839 chr21 47258313 GANGSTR_446337 TAATAATAATAATAATAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47258313;END=47258330;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|44:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8840 chr21 47259596 GANGSTR_446338 TGTTGTTGTTGTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47259596;END=47259610;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8841 chr21 47260015 GANGSTR_446339 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47260015;END=47260026;PERIOD=2;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8842 chr21 47262123 GANGSTR_446340 TGTTGTGTTGTGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47262123;END=47262137;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8843 chr21 47262303 GANGSTR_446341 TTTGTTTGTTTGTTTGTTTG TTTGTTTGTTTGTTTG . . INFRAME_PGEOM=0.96;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47262303;END=47262322;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=80;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|-4:1:0.5:80:0:0:0:35.90|44.10:0|0:16.81:-0.64:56:-0.11:-4|27;0|20:-4|29;0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8844 chr21 47270034 GANGSTR_446342 TGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47270034;END=47270045;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8845 chr21 47271429 GANGSTR_446343 AAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47271429;END=47271440;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|32:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8846 chr21 47275028 GANGSTR_446344 GGAGGGAGGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47275028;END=47275039;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:1:25.00|25.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8847 chr21 47281223 GANGSTR_446345 CCTGCCTGCCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47281223;END=47281234;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8848 chr21 47283238 GANGSTR_446346 GCAGCAGCAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47283238;END=47283249;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|39:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8849 chr21 47286702 GANGSTR_446347 CTCCCCTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=47286702;END=47286711;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:27.05|16.95:0|0:.:0:.:0:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8850 chr21 47289341 GANGSTR_446348 CTTCCTTCCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47289341;END=47289352;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|32:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8851 chr21 47289454 GANGSTR_446349 CTGCTCCTGCTCCTGCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=47289454;END=47289471;PERIOD=6;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:2:25.00|25.00:0|0:.:0:.:0:0|22:0|23:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8852 chr21 47298895 GANGSTR_446351 TTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47298895;END=47298914;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|37:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8853 chr21 47299819 GANGSTR_446352 AAAACAAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47299819;END=47299828;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8854 chr21 47303856 GANGSTR_446353 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47303856;END=47303867;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8855 chr21 47329118 GANGSTR_446355 CCTGGCCTGGCCTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47329118;END=47329132;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8856 chr21 47337485 GANGSTR_446356 TCTCTCTCTCTCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47337485;END=47337498;PERIOD=2;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:1:21.50|21.50:0|0:.:0:.:0:0|27:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8857 chr21 47350055 GANGSTR_446358 GCTGGGGCTGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47350055;END=47350066;PERIOD=6;NSKIP=0;NFILT=0;DP=35;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:35:0:0:1:17.50|17.50:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8858 chr21 47354592 GANGSTR_446359 ATCAGAATCAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47354592;END=47354603;PERIOD=6;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8859 chr21 47357328 GANGSTR_446360 CACCCACCCACC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47357328;END=47357339;PERIOD=4;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8860 chr21 47357579 GANGSTR_446361 GAGGAGAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47357579;END=47357588;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8861 chr21 47368485 GANGSTR_446362 GAGGGAGGGAGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=47368485;END=47368500;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:1:36.48|24.52:0|0:.:0:.:0:-1|1;0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8862 chr21 47370715 GANGSTR_446363 CCTCCCTCCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=47370715;END=47370726;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8863 chr21 47372912 GANGSTR_446364 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47372912;END=47372923;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8864 chr21 47377924 GANGSTR_446365 AAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47377924;END=47377933;PERIOD=5;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|51:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8865 chr21 47385800 GANGSTR_446367 GAGTGAGTGAGTGAGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47385800;END=47385815;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8866 chr21 47392485 GANGSTR_446368 GCCCTGCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47392485;END=47392494;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8867 chr21 47396918 GANGSTR_446369 TGGGGGTGGGGGTGGGGGTGGGGGTGGA TGGGGGGGGGGGTGGGGGTGGG,TGGGGGTGGGGGTGGGGGTGGA . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=47396918;END=47396941;PERIOD=6;NSKIP=0;NFILT=0;BPDIFFS=-6,-6;DP=29;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=1,1;HRUN=5;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-6|-6:1:0.5:29:0:1:0:5.97|23.03:0|0:2.98:-3.04:28:-0.89:-6|16:-6|16:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8868 chr21 47401642 GANGSTR_446372 CCCCTCCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.06;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=47401642;END=47401651;PERIOD=5;NSKIP=0;NFILT=0;DP=16;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:16:0:0:1:8.00|8.00:0|0:.:0:.:0:0|11:0|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8869 chr21 47401705 GANGSTR_446373 GGCGGCGGCGGCGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.05;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.05;START=47401705;END=47401719;PERIOD=3;NSKIP=0;NFILT=0;DP=24;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:24:0:0:0:12.00|12.00:0|0:.:0:.:0:0|18:0|18:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8870 chr21 47409469 GANGSTR_446374 GCCCCTGCCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=47409469;END=47409480;PERIOD=6;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|19:0|20:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8871 chr21 47412581 GANGSTR_446375 CAGGCCAGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47412581;END=47412590;PERIOD=5;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8872 chr21 47415082 GANGSTR_446376 CAGGGCAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47415082;END=47415091;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:24.49|30.51:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8873 chr21 47416540 GANGSTR_446377 GGGCCAGGTGGGCCAGGTGGGCCAGGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47416540;END=47416566;PERIOD=9;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|34:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8874 chr21 47425041 GANGSTR_446378 GTGCGTGCGTGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47425041;END=47425052;PERIOD=4;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|40:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8875 chr21 47428473 GANGSTR_446379 CCTCCCTCCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47428473;END=47428484;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:2:34.50|34.50:0|0:.:0:.:0:0|50:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8876 chr21 47431119 GANGSTR_446380 TCCCTCCCTCCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47431119;END=47431130;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8877 chr21 47436953 GANGSTR_446381 AGGGAGGGAGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47436953;END=47436964;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|47:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8878 chr21 47440547 GANGSTR_446382 CCCCACCCCACCCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47440547;END=47440561;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8879 chr21 47446884 GANGSTR_446383 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47446884;END=47446895;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|55:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8880 chr21 47449048 GANGSTR_446384 GATGATGATGAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47449048;END=47449059;PERIOD=3;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8881 chr21 47459378 GANGSTR_446385 GATGTTATTTATTTAT GGTGTTATTTATTTAT . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47459382;END=47459393;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:52:0:0:0:31.08|20.92:0|0:51.13:-0.78:42:-0.69:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8882 chr21 47473611 GANGSTR_446386 ACACACACACACACACACACAC ACACACACACACACACACACACACAC . . INFRAME_PGEOM=0.87;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47473611;END=47473632;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=4;DP=81;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=1;AC=1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|4:1:0.5:81:0:2:0:41.20|39.80:0|0:44.52:-0:59:0:-21|1;-7|2;-2|1;0|31;2|1;4|20:-2|1;0|23;2|1;4|19:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8883 chr21 47473992 GANGSTR_446387 TTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47473992;END=47473999;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|55:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8884 chr21 47479271 GANGSTR_446388 GTGTGTGTGTGT . . . INFRAME_PGEOM=1;INFRAME_UP=0.02;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47479271;END=47479282;PERIOD=2;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:1:0:28.50|28.50:0|0:.:0:.:0:-2|1;0|44:-2|1;0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8885 chr21 47497436 GANGSTR_446390 TGAATGAATGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47497436;END=47497447;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|57:0|53:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8886 chr21 47498173 GANGSTR_446391 AGGAGAGGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47498173;END=47498182;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8887 chr21 47512649 GANGSTR_446392 TCCTCCTCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47512649;END=47512660;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:1:0:32.50|32.50:0|0:.:0:.:0:0|49:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8888 chr21 47518158 GANGSTR_446393 GGCGGCGGCGGCGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47518158;END=47518172;PERIOD=3;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:1:21.50|21.50:0|0:.:0:.:0:0|28:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8889 chr21 47520225 GANGSTR_446394 TGTTTGTTTGTTTGTTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47520225;END=47520244;PERIOD=4;NSKIP=0;NFILT=0;DP=70;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:70:0:0:0:35.00|35.00:0|0:.:0:.:0:0|49:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8890 chr21 47525301 GANGSTR_446395 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47525301;END=47525320;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8891 chr21 47528007 GANGSTR_446396 TATATATATATATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47528007;END=47528020;PERIOD=2;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|34:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8892 chr21 47530862 GANGSTR_446397 CCTCCCTCCCTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=47530862;END=47530873;PERIOD=4;NSKIP=0;NFILT=0;DP=42;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:42:0:0:0:21.00|21.00:0|0:.:0:.:0:0|24:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8893 chr21 47546381 GANGSTR_446398 ACCCTGGCCTGG AACCTGGCCTGGCCCGGCCCGGCCCGG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47546383;END=47546392;PERIOD=5;NSKIP=0;NFILT=0;BPDIFFS=15;DP=58;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:15|15:1:1:58:0:1:0:29.00|29.00:0|0:7.76:0:.:0:-41|1;-26|4;-1|2;0|7;4|1;15|24:0|1;15|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8894 chr21 47548193 GANGSTR_446399 CCCCTCCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47548193;END=47548202;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8895 chr21 47562009 GANGSTR_446401 TAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47562009;END=47562020;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8896 chr21 47563200 GANGSTR_446402 CTCCCTCCCTCC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47563200;END=47563211;PERIOD=4;NSKIP=0;NFILT=0;DP=38;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:38:0:0:0:19.00|19.00:0|0:.:0:.:0:0|25:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8897 chr21 47563970 GANGSTR_446403 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47563970;END=47563981;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|50:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8898 chr21 47564650 GANGSTR_446405 CTCTCTCTCTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=47564650;END=47564661;PERIOD=2;NSKIP=0;NFILT=0;DP=30;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:30:0:0:0:15.00|15.00:0|0:.:0:.:0:0|23:0|22:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8899 chr21 47566791 GANGSTR_446406 CCCCACCCCACCCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47566791;END=47566805;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8900 chr21 47568545 GANGSTR_446407 AAATTAAATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47568545;END=47568554;PERIOD=5;NSKIP=0;NFILT=0;DP=88;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:88:0:0:0:44.00|44.00:0|0:.:0:.:0:0|61:0|61:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8901 chr21 47581348 GANGSTR_446408 AGCAGCAGCAGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47581348;END=47581359;PERIOD=3;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8902 chr21 47588842 GANGSTR_446409 CCTGCCTGCCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47588842;END=47588853;PERIOD=4;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8903 chr21 47596209 GANGSTR_446410 AAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47596209;END=47596216;PERIOD=4;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|58:0|57:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8904 chr21 47598803 GANGSTR_446411 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47598803;END=47598814;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8905 chr21 47602344 GANGSTR_446412 AGGGGAGGGGAGGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47602344;END=47602358;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8906 chr21 47606752 GANGSTR_446413 TTTGTTTGTTTG TTTGTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47606752;END=47606763;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:50:0:0:0:25.00|25.00:0|0:11.42:0:.:0:-4|37:-4|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8907 chr21 47615478 GANGSTR_446414 AAACAAACAAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47615478;END=47615501;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8908 chr21 47623012 GANGSTR_446415 AGAGAAGAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47623012;END=47623021;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8909 chr21 47624218 GANGSTR_446416 AAGAAAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47624218;END=47624229;PERIOD=4;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:1:33.00|33.00:0|0:.:0:.:0:-17|1;0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8910 chr21 47624544 GANGSTR_446417 AAAGAAAGAAAGAAAGAAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47624544;END=47624567;PERIOD=4;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|31:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8911 chr21 47625203 GANGSTR_446418 GAGCAGGAGAGCAGGAGAGCAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=47625203;END=47625226;PERIOD=8;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|24:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8912 chr21 47635215 GANGSTR_446419 ACAGGGGACAGGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=47635215;END=47635228;PERIOD=7;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:0:0:21.50|21.50:0|0:.:0:.:0:0|23:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8913 chr21 47635548 GANGSTR_446420 ACCCTGACCCTGACCCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47635548;END=47635565;PERIOD=6;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:0:23.00|23.00:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8914 chr21 47638537 GANGSTR_446421 CAAAACAAAACAAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47638537;END=47638551;PERIOD=5;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8915 chr21 47639033 GANGSTR_446422 GCAGCAGCAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47639033;END=47639044;PERIOD=3;NSKIP=0;NFILT=0;DP=39;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:39:0:0:1:19.50|19.50:0|0:.:0:.:0:0|26:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8916 chr21 47639266 GANGSTR_446423 CCACCCACCCAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47639266;END=47639277;PERIOD=4;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|33:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8917 chr21 47640021 GANGSTR_446424 CAGCAGCAGCAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47640021;END=47640032;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8918 chr21 47643102 GANGSTR_446425 TTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47643102;END=47643113;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.50|32.50:0|0:.:0:.:0:0|30:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8919 chr21 47649324 GANGSTR_446427 GCCGGGGCCGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47649324;END=47649335;PERIOD=6;NSKIP=0;NFILT=0;DP=37;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:37:0:1:1:18.50|18.50:0|0:.:0:.:0:0|26:-12|1;0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8920 chr21 47650830 GANGSTR_446428 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47650830;END=47650841;PERIOD=4;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|29:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8921 chr21 47660298 GANGSTR_446429 GGGAGGGAGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47660298;END=47660309;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8922 chr21 47661952 GANGSTR_446430 ATCTATCTATCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47661952;END=47661963;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:2:29.50|29.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8923 chr21 47675973 GANGSTR_446431 GACATGACAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47675973;END=47675982;PERIOD=5;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8924 chr21 47678652 GANGSTR_446432 TGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47678652;END=47678671;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-2;DP=82;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-2|-2:1:1:82:0:0:0:41.00|41.00:0|0:15.51:0:.:0:-2|51:-2|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8925 chr21 47688115 GANGSTR_446433 AAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=47688115;END=47688126;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:1:1:30.50|30.50:0|0:.:0:.:0:-1|1;0|38:-4|1;0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8926 chr21 47688952 GANGSTR_446434 TAAATAAATAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47688952;END=47688971;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|40:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8927 chr21 47691411 GANGSTR_446435 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47691411;END=47691422;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8928 chr21 47691776 GANGSTR_446436 AAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47691776;END=47691785;PERIOD=5;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8929 chr21 47692024 GANGSTR_446437 CATTCATTCATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47692024;END=47692035;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8930 chr21 47695338 GANGSTR_446438 ACACACACACAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47695338;END=47695349;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:0:24.50|24.50:0|0:.:0:.:0:0|39:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8931 chr21 47696827 GANGSTR_446439 TTATTTATTTATTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47696827;END=47696842;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|30:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8932 chr21 47700355 GANGSTR_446440 ATAAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47700355;END=47700364;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8933 chr21 47701917 GANGSTR_446441 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47701917;END=47701928;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8934 chr21 47702723 GANGSTR_446442 AAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47702723;END=47702738;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:1:1:32.50|32.50:0|0:.:0:.:0:-9|1;0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8935 chr21 47707097 GANGSTR_446443 GTTTTGTTTTGTTTTGTTTTGTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47707097;END=47707121;PERIOD=5;NSKIP=0;NFILT=0;DP=74;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:74:0:0:0:37.00|37.00:0|0:.:0:.:0:0|32:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8936 chr21 47707936 GANGSTR_446444 AAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47707936;END=47707945;PERIOD=5;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:2:24.50|24.50:0|0:.:0:.:0:-2|1;0|34:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8937 chr21 47709896 GANGSTR_446445 CGTGTGTGTGTGT CATGTGTGTGTGT . . INFRAME_PGEOM=0.52;INFRAME_UP=0;INFRAME_DOWN=0.08;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0;OUTFRAME_DOWN=0;START=47709897;END=47709908;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=303;DSNP=0;DSTUTTER=2;DFLANKINDEL=31;AN=2;REFAC=1;AC=1;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|1:0|0:1:0.5:303:0:2:31:175.37|127.63:0|0:28.96:-10.69:176:-2.05:-4|20;0|233:-4|2;0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8938 chr21 47715886 GANGSTR_446446 GCTTGCTTGCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47715886;END=47715897;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|41;2|1:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8939 chr21 47717438 GANGSTR_446447 CTTCCTTCCTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47717438;END=47717449;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|34:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8940 chr21 47719260 GANGSTR_446448 GCAGCAGCAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47719260;END=47719271;PERIOD=3;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8941 chr21 47720365 GANGSTR_446450 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47720365;END=47720376;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8942 chr21 47721986 GANGSTR_446451 TGGTGGTGGTGGTGGTGGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47721986;END=47722006;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:3:26.50|26.50:0|0:.:0:.:0:0|34:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8943 chr21 47722467 GANGSTR_446452 GCAGCAGCAGCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47722467;END=47722478;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8944 chr21 47725861 GANGSTR_446453 AAAAGAAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47725861;END=47725870;PERIOD=5;NSKIP=0;NFILT=0;DP=43;DSNP=0;DSTUTTER=1;DFLANKINDEL=3;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:43:0:1:3:21.50|21.50:0|0:.:0:.:0:0|28:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8945 chr21 47729911 GANGSTR_446454 AAAATAAAATAAAATAAAATAAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47729911;END=47729935;PERIOD=5;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|28:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8946 chr21 47732482 GANGSTR_446455 CCAACCAACCAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47732482;END=47732493;PERIOD=4;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8947 chr21 47741079 GANGSTR_446456 TATATATATATATATT TATATATATATATATA . . INFRAME_PGEOM=1;INFRAME_UP=0.05;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47741079;END=47741092;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=44;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:44:0:2:0:22.00|22.00:0|0:10.13:0:.:0:0|31;2|1:-2|1;0|29;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8948 chr21 47743299 GANGSTR_446457 CTTTTCTTTTCTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.76;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=47743299;END=47743313;PERIOD=5;NSKIP=0;NFILT=0;DP=83;DSNP=0;DSTUTTER=0;DFLANKINDEL=4;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:83:0:0:4:41.50|41.50:0|0:.:0:.:0:-2|1;-1|1;0|51:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8949 chr21 47745309 GANGSTR_446458 GGGAGGGAGGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47745309;END=47745320;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|35:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8950 chr21 47756901 GANGSTR_446459 TTTGTTTGTTTGTTTGTTTGTTTG TTTGTTTGTTTGTTTGTTTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.05;OUTFRAME_DOWN=0.02;START=47756901;END=47756924;PERIOD=4;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=3;AN=2;REFAC=0;AC=2;HRUN=3;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:69:0:0:3:34.50|34.50:0|0:12.13:0:.:0:-4|37;-3|1:-4|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8951 chr21 47757496 GANGSTR_446460 TGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47757496;END=47757510;PERIOD=5;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8952 chr21 47758693 GANGSTR_446461 TATTTATTTATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47758693;END=47758712;PERIOD=4;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|29:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8953 chr21 47761397 GANGSTR_446462 ATTTTTATTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47761397;END=47761408;PERIOD=6;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=5;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|45:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8954 chr21 47761590 GANGSTR_446463 TGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47761590;END=47761604;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8955 chr21 47762819 GANGSTR_446464 TATTTTATTTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47762819;END=47762833;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:1:28.50|28.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8956 chr21 47763566 GANGSTR_446465 TTCTTTCTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47763566;END=47763577;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:1:31.00|31.00:0|0:.:0:.:0:-9|1;0|47:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8957 chr21 47763967 GANGSTR_446466 TCTTTTCTTTTCTTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.98;OUTFRAME_UP=0.06;OUTFRAME_DOWN=0.06;START=47763967;END=47763986;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=6;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:6:29.00|29.00:0|0:.:0:.:0:-1|2;0|27:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8958 chr21 47765135 GANGSTR_446467 TTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47765135;END=47765142;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8959 chr21 47770840 GANGSTR_446468 GCTGGGCTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47770840;END=47770849;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|50:0|50:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8960 chr21 47777358 GANGSTR_446469 TTTTGTTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47777358;END=47777377;PERIOD=5;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:0:0:34.00|34.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8961 chr21 47782073 GANGSTR_446470 GCTTGCTTGCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47782073;END=47782084;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8962 chr21 47786274 GANGSTR_446471 CTTTGGCCTTTGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47786274;END=47786287;PERIOD=7;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:1:26.50|26.50:0|0:.:0:.:0:0|27:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8963 chr21 47792936 GANGSTR_446472 TGTTGTTGTTGTTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47792936;END=47792950;PERIOD=3;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|31:0|28:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8964 chr21 47795071 GANGSTR_446473 CCCTGCCCTGCCCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47795071;END=47795085;PERIOD=5;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8965 chr21 47800495 GANGSTR_446474 CCCCACCCCACCCCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=1;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.05;START=47800495;END=47800509;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=1;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:1:1:27.50|27.50:0|0:.:0:.:0:-1|1;0|38:-5|1;0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8966 chr21 47810456 GANGSTR_446476 CCTGGCCTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47810456;END=47810465;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|41:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8967 chr21 47811995 GANGSTR_446477 TTATTATTATTATTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47811995;END=47812009;PERIOD=3;NSKIP=0;NFILT=0;DP=51;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:51:0:0:0:25.50|25.50:0|0:.:0:.:0:0|31:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8968 chr21 47815784 GANGSTR_446478 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47815784;END=47815795;PERIOD=3;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|48:.:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8969 chr21 47816008 GANGSTR_446479 AATAATAATAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47816008;END=47816019;PERIOD=3;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|36:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8970 chr21 47816515 GANGSTR_446480 TTTATTTATTTATTTATTTA . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47816515;END=47816534;PERIOD=4;NSKIP=0;NFILT=0;DP=68;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:68:0:1:0:34.00|34.00:0|0:.:0:.:0:-4|1;0|34:-4|1;0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8971 chr21 47821751 GANGSTR_446481 TTCTTTTCTTTTCTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47821751;END=47821765;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8972 chr21 47823239 GANGSTR_446482 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47823239;END=47823250;PERIOD=2;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:22.45|40.55:0|0:.:0:.:0:0|47:0|10:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8973 chr21 47823467 GANGSTR_446483 ATTGTGTGTGTGTG AGTGTGTGTGTGTG . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47823469;END=47823480;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=2;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:55:0:0:0:27.50|27.50:0|0:13.5:0:.:0:0|45:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8974 chr21 47823935 GANGSTR_446484 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=47823935;END=47823946;PERIOD=2;NSKIP=0;NFILT=0;DP=88;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:88:0:0:0:44.00|44.00:0|0:.:0:.:0:0|72:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8975 chr21 47824051 GANGSTR_446485 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47824051;END=47824062;PERIOD=2;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:-2|1;0|36:0|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8976 chr21 47826161 GANGSTR_446486 CCCTCCCTCCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47826161;END=47826172;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8977 chr21 47834742 GANGSTR_446487 CCTCCTCCTCCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47834742;END=47834753;PERIOD=3;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:0:26.00|26.00:0|0:.:0:.:0:0|41:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8978 chr21 47844237 GANGSTR_446488 CCACCACCACCA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47844237;END=47844248;PERIOD=3;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|48:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8979 chr21 47845039 GANGSTR_446489 CTCTGGGCTCTGGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47845039;END=47845052;PERIOD=7;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|44:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8980 chr21 47855138 GANGSTR_446490 TTTGGTTTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.94;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.08;START=47855138;END=47855147;PERIOD=5;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:5:23.00|23.00:0|0:.:0:.:0:-2|1;-1|2;0|31:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8981 chr21 47855449 GANGSTR_446491 TGTTTTGTTTTGTTTTGTTTTGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47855449;END=47855473;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|25:0|25:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8982 chr21 47859072 GANGSTR_446492 CACACACACACACA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47859072;END=47859085;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|43:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8983 chr21 47863122 GANGSTR_446493 GTTGTTGTTGTTGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47863122;END=47863136;PERIOD=3;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:0:33.00|33.00:0|0:.:0:.:0:0|42:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8984 chr21 47879111 GANGSTR_446494 GAGCTGGAGCTGGAGCTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.04;INFRAME_DOWN=0.04;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=47879111;END=47879128;PERIOD=6;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|24:0|26:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8985 chr21 47882996 GANGSTR_446495 AGATGAAGATGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47882996;END=47883007;PERIOD=6;NSKIP=0;NFILT=0;DP=47;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:47:0:0:0:23.50|23.50:0|0:.:0:.:0:0|34:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8986 chr21 47883594 GANGSTR_446496 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTT . . INFRAME_PGEOM=0.87;INFRAME_UP=0.08;INFRAME_DOWN=0.15;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.04;OUTFRAME_DOWN=0.04;START=47883594;END=47883631;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=0;DP=57;DSNP=0;DSTUTTER=4;DFLANKINDEL=0;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:0|0:1:1:57:0:4:0:28.50|28.50:0|0:9.37:0:.:0:-4|1;-2|2;0|19;2|1:-4|1;-2|1;0|17;2|1:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8987 chr21 47887269 GANGSTR_446497 TTTGTTTGTTTGTTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47887269;END=47887292;PERIOD=4;NSKIP=0;NFILT=0;DP=52;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:52:0:0:1:26.00|26.00:0|0:.:0:.:0:0|35:0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8988 chr21 47888654 GANGSTR_446498 ATGTTTATGTTTATGTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47888654;END=47888671;PERIOD=6;NSKIP=0;NFILT=0;DP=63;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:63:0:0:0:31.50|31.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8989 chr21 47892924 GANGSTR_446499 TTAATTAATTAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47892924;END=47892935;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|45:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8990 chr21 47893427 GANGSTR_446500 TTTTATTTTATTTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47893427;END=47893441;PERIOD=5;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:1:28.00|28.00:0|0:.:0:.:0:0|29:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8991 chr21 47905150 GANGSTR_446502 TGTGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.03;INFRAME_DOWN=0.07;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47905150;END=47905169;PERIOD=2;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:2:0:27.00|27.00:0|0:.:0:.:0:-2|2;0|33:-2|2;0|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8992 chr21 47907159 GANGSTR_446503 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47907159;END=47907170;PERIOD=3;NSKIP=0;NFILT=0;DP=56;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:56:0:0:0:28.00|28.00:0|0:.:0:.:0:0|46:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8993 chr21 47907434 GANGSTR_446504 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47907434;END=47907445;PERIOD=4;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:1:32.50|32.50:0|0:.:0:.:0:0|42:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8994 chr21 47920043 GANGSTR_446505 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47920043;END=47920054;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|42:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8995 chr21 47921305 GANGSTR_446506 GTTTATGTTTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47921305;END=47921316;PERIOD=6;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:2:37.50|37.50:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8996 chr21 47922047 GANGSTR_446507 TTTATTTATTTA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47922047;END=47922058;PERIOD=4;NSKIP=0;NFILT=0;DP=75;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:75:0:0:0:37.50|37.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8997 chr21 47934036 GANGSTR_446509 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47934036;END=47934047;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|35:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8998 chr21 47935451 GANGSTR_446510 TATTTATTTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47935451;END=47935462;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|45:0|42:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
8999 chr21 47935757 GANGSTR_446511 TTTGTTTGTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47935757;END=47935768;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9000 chr21 47941099 GANGSTR_446512 TTTCTTTTCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47941099;END=47941108;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9001 chr21 47943141 GANGSTR_446513 TTATTTATTTATTTATTTAT . . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.06;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47943141;END=47943160;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=1;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:1:0:30.50|30.50:0|0:.:0:.:0:-4|1;0|30:-4|1;0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9002 chr21 47946257 GANGSTR_446515 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47946257;END=47946268;PERIOD=2;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|58:0|55:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9003 chr21 47950979 GANGSTR_446516 TGAGTGAGTGAGTGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47950979;END=47950994;PERIOD=4;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9004 chr21 47961866 GANGSTR_446517 GTTTTGTTTTGTTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47961866;END=47961880;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9005 chr21 47965745 GANGSTR_446518 GTTGGTTGGTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47965745;END=47965756;PERIOD=4;NSKIP=0;NFILT=0;DP=46;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:46:0:0:1:23.00|23.00:0|0:.:0:.:0:0|38:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9006 chr21 47969040 GANGSTR_446519 TGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47969040;END=47969055;PERIOD=2;NSKIP=0;NFILT=0;DP=49;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:49:0:0:1:24.50|24.50:0|0:.:0:.:0:0|33:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9007 chr21 47977730 GANGSTR_446520 AACAAAACAAAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47977730;END=47977744;PERIOD=5;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|37:0|37:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9008 chr21 47979347 GANGSTR_446521 GCAGGGCAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47979347;END=47979356;PERIOD=5;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9009 chr21 47979780 GANGSTR_446522 TGACCTTGACCTTGACCT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47979780;END=47979797;PERIOD=6;NSKIP=0;NFILT=0;DP=69;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:69:0:0:0:34.50|34.50:0|0:.:0:.:0:0|46:0|46:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9010 chr21 47982602 GANGSTR_446523 GAGTGAGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47982602;END=47982609;PERIOD=4;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9011 chr21 47987309 GANGSTR_446524 TGGTGGTGGTGGTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47987309;END=47987323;PERIOD=3;NSKIP=0;NFILT=0;DP=53;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:53:0:0:0:26.50|26.50:0|0:.:0:.:0:0|41:0|38:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9012 chr21 47987778 GANGSTR_446525 AAGGAAAGGAAAGGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47987778;END=47987792;PERIOD=5;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9013 chr21 47991798 GANGSTR_446526 CTTTCTTTCTTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=47991798;END=47991809;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9014 chr21 47998227 GANGSTR_446527 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=47998227;END=47998238;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|33:0|33:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9015 chr21 48002151 GANGSTR_446528 CTGTGCTGTGCTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=48002151;END=48002165;PERIOD=5;NSKIP=0;NFILT=0;DP=48;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:48:0:0:0:24.00|24.00:0|0:.:0:.:0:0|35:0|35:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9016 chr21 48002874 GANGSTR_446529 AAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=48002874;END=48002881;PERIOD=4;NSKIP=0;NFILT=0;DP=61;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:61:0:0:0:30.50|30.50:0|0:.:0:.:0:0|40:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9017 chr21 48008392 GANGSTR_446530 AAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=48008392;END=48008403;PERIOD=4;NSKIP=0;NFILT=0;DP=60;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:60:0:0:0:30.00|30.00:0|0:.:0:.:0:0|48:0|47:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9018 chr21 48009361 GANGSTR_446531 AGAAAGAAAGAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=48009361;END=48009372;PERIOD=4;NSKIP=0;NFILT=0;DP=62;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:62:0:0:0:31.00|31.00:0|0:.:0:.:0:0|41:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9019 chr21 48014614 GANGSTR_446532 CAACAACAACAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=48014614;END=48014625;PERIOD=3;NSKIP=0;NFILT=0;DP=50;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:50:0:0:0:25.00|25.00:0|0:.:0:.:0:0|39:0|34:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9020 chr21 48029859 GANGSTR_446533 TTGGTTGGTTGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=48029859;END=48029870;PERIOD=4;NSKIP=0;NFILT=0;DP=41;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:41:0:0:0:20.50|20.50:0|0:.:0:.:0:0|30:0|30:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9021 chr21 48033516 GANGSTR_446534 TTTTGTTTTGTTTTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=48033516;END=48033530;PERIOD=5;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=4;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9022 chr21 48034039 GANGSTR_446535 TGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=48034039;END=48034050;PERIOD=2;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|48:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9023 chr21 48034153 GANGSTR_446536 TGTGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.94;INFRAME_UP=0.02;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=48034153;END=48034170;PERIOD=2;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=2;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:2:0:33.50|33.50:0|0:.:0:.:0:-2|2;0|48:-2|2;0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9024 chr21 48035739 GANGSTR_446537 TTTCTTTCTTTC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=48035739;END=48035750;PERIOD=4;NSKIP=0;NFILT=0;DP=57;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:57:0:0:0:28.50|28.50:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9025 chr21 48038042 GANGSTR_446538 AAAGAAAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=48038042;END=48038049;PERIOD=4;NSKIP=0;NFILT=0;DP=76;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:76:0:0:1:38.00|38.00:0|0:.:0:.:0:0|59:0|56:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9026 chr21 48038655 GANGSTR_446539 AAATAAATAAATAAATAAAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=48038655;END=48038674;PERIOD=4;NSKIP=0;NFILT=0;DP=59;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:59:0:0:0:29.50|29.50:0|0:.:0:.:0:0|27:0|27:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9027 chr21 48041904 GANGSTR_446540 ATTATTATTATT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=48041904;END=48041915;PERIOD=3;NSKIP=0;NFILT=0;DP=65;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:65:0:0:0:32.50|32.50:0|0:.:0:.:0:0|47:0|45:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9028 chr21 48041970 GANGSTR_446541 GCAAAGCAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=48041970;END=48041979;PERIOD=5;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:0:27.00|27.00:0|0:.:0:.:0:0|39:0|39:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9029 chr21 48043105 GANGSTR_446542 AAACAAACAAACAAAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=48043105;END=48043120;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:1:27.50|27.50:0|0:.:0:.:0:0|27:0|24:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9030 chr21 48051970 GANGSTR_446543 AATAAATAAATA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=48051970;END=48051981;PERIOD=4;NSKIP=0;NFILT=0;DP=55;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:55:0:0:0:27.50|27.50:0|0:.:0:.:0:0|36:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9031 chr21 48053344 GANGSTR_446544 TAAATAAATAAATAAA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=48053344;END=48053359;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|46:0|44:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9032 chr21 48053656 GANGSTR_446545 TGTGTGTGTGTGTGTG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=48053656;END=48053671;PERIOD=2;NSKIP=0;NFILT=0;DP=71;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:71:0:0:0:35.50|35.50:0|0:.:0:.:0:0|54:0|51:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9033 chr21 48055363 GANGSTR_446546 CCTCGCCTCG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=48055363;END=48055372;PERIOD=5;NSKIP=0;NFILT=0;DP=44;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:44:0:0:0:22.00|22.00:0|0:.:0:.:0:0|31:0|31:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9034 chr21 48061632 GANGSTR_446547 TGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTG . . INFRAME_PGEOM=1;INFRAME_UP=0.03;INFRAME_DOWN=0.05;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=48061632;END=48061659;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-4;DP=50;DSNP=0;DSTUTTER=1;DFLANKINDEL=3;AN=2;REFAC=0;AC=2;HRUN=1;HET=0;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|1:-4|-4:1:1:50:0:1:3:25.00|25.00:0|0:10.53:0:.:0:-6|1;-4|33:-6|1;-4|32:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9035 chr21 48066632 GANGSTR_446548 GTGTGTGTGTGT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.03;INFRAME_DOWN=0.03;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.03;OUTFRAME_DOWN=0.03;START=48066632;END=48066643;PERIOD=2;NSKIP=0;NFILT=0;DP=40;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:40:0:0:0:20.00|20.00:0|0:.:0:.:0:0|35:0|29:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9036 chr21 48068963 GANGSTR_446549 CTGAGCTGAG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=48068963;END=48068972;PERIOD=5;NSKIP=0;NFILT=0;DP=58;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:58:0:0:0:29.00|29.00:0|0:.:0:.:0:0|40:0|40:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9037 chr21 48069656 GANGSTR_446550 GGGCGGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=48069656;END=48069663;PERIOD=4;NSKIP=0;NFILT=0;DP=45;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:45:0:0:0:22.50|22.50:0|0:.:0:.:0:0|37:0|36:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9038 chr21 48071650 GANGSTR_446551 GAGGGAGGGAGG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=48071650;END=48071661;PERIOD=4;NSKIP=0;NFILT=0;DP=54;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:54:0:0:1:27.00|27.00:0|0:.:0:.:0:0|42:0|41:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9039 chr21 48093632 GANGSTR_446553 TATTATTATTAT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=48093632;END=48093643;PERIOD=3;NSKIP=0;NFILT=0;DP=64;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=2;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:64:0:0:0:32.00|32.00:0|0:.:0:.:0:0|45:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9040 chr21 48098550 GANGSTR_446555 ATACATAC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=48098550;END=48098557;PERIOD=4;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|53:0|52:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9041 chr21 48098619 GANGSTR_446556 ATGATGATGATG . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=48098619;END=48098630;PERIOD=3;NSKIP=0;NFILT=0;DP=67;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=1;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:67:0:0:0:33.50|33.50:0|0:.:0:.:0:0|43:0|43:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9042 chr21 48103172 GANGSTR_446557 AGGGTTAGGGTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=48103172;END=48103183;PERIOD=6;NSKIP=0;NFILT=0;DP=66;DSNP=0;DSTUTTER=0;DFLANKINDEL=1;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:66:0:0:1:33.00|33.00:0|0:.:0:.:0:0|49:0|49:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9043 chr21 48108609 GANGSTR_446558 AAGAAAGAAAGA . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=48108609;END=48108620;PERIOD=4;NSKIP=0;NFILT=0;DP=100;DSNP=0;DSTUTTER=0;DFLANKINDEL=5;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:100:0:0:5:50.00|50.00:0|0:.:0:.:0:0|74:0|73:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9044 chr21 48108744 GANGSTR_446559 ACACACACACACACACACACACACACACACAC ACACACACACACACACACACACAC,ACACACACACACACACACACACACACACACACAT . . INFRAME_PGEOM=0.98;INFRAME_UP=0.02;INFRAME_DOWN=0.12;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=48108744;END=48108775;PERIOD=2;NSKIP=0;NFILT=0;BPDIFFS=-8,2;DP=81;DSNP=0;DSTUTTER=2;DFLANKINDEL=1;AN=2;REFAC=0;AC=1,1;HRUN=1;HET=0.5;HWEP=1 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 1|2:-8|2:1:0.5:81:0:2:1:61.19|19.81:0|0:21.57:-6.55:65:-0.46:-10|1;-8|34;0|3;2|4:-10|1;-8|30;2|5:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9045 chr21 48109624 GANGSTR_446560 ATTTATTTATTT . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.02;INFRAME_DOWN=0.02;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.02;OUTFRAME_DOWN=0.02;START=48109624;END=48109635;PERIOD=4;NSKIP=0;NFILT=0;DP=95;DSNP=0;DSTUTTER=0;DFLANKINDEL=0;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:95:0:0:0:47.50|47.50:0|0:.:0:.:0:0|59:0|58:PASS
ecf8c4f9f8ba "planemo upload for repository https://github.com/Kulivox/TRToolsGalaxyWrapper commit 08480e3145858e41b14bf1061f87243e8cc2d04e"
michal_klinka
parents:
diff changeset
9046 chr21 48119372 GANGSTR_446561 GGGCGGGCGGGC . . . INFRAME_PGEOM=0.95;INFRAME_UP=0.01;INFRAME_DOWN=0.01;OUTFRAME_PGEOM=0.95;OUTFRAME_UP=0.01;OUTFRAME_DOWN=0.01;START=48119372;END=48119383;PERIOD=4;NSKIP=0;NFILT=0;DP=156;DSNP=0;DSTUTTER=0;DFLANKINDEL=2;AN=2;REFAC=2;HRUN=3;HET=0;HWEP=1;AC=0 GT:GB:Q:PQ:DP:DSNP:DSTUTTER:DFLANKINDEL:PDP:PSNP:GLDIFF:AB:DAB:FS:ALLREADS:MALLREADS:FILTER 0|0:0|0:1:1:156:0:0:2:78.00|78.00:0|0:.:0:.:0:0|101;4|2:0|96:PASS