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annotate NCBO_services/README @ 21:03bacb9f1562

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bug fixed in get ontology
author Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
date Tue, 28 Feb 2012 21:17:54 +0100
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4 =============
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5 NCBO Services
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6 =============
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10 INSTALLATION
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11 ============
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13 1.- Stop Galaxy.
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15 2.- Copy the .jar files to /galaxy-dist/tool-data/shared/jars/
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17 3.- Create directory /galaxy-dist/tools/NCBO_services/
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19 4.- Copy the .xml files to /galaxy-dist/tools/NCBO_services/
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21 5.- Add the following lines to /galaxy-dist/tool_conf.xml:
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23 <section name="NCBO services" id="NCBO_services">
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24 <tool file="NCBO_services/get_ontology.xml"/>
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25 <tool file="NCBO_services/extract.xml"/>
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26 <tool file="NCBO_services/get_ontology_view.xml"/>
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27 <tool file="NCBO_services/ncbo_annotator.xml"/>
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28 <tool file="NCBO_services/ncbo_annotator.xml"/>
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29 <tool file="NCBO_services/ncbo_recommender.xml"/>
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30 </section>
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32 6.- Start Galaxy.
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36 USAGE
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37 =====
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39 Each tool has a different functionality, but all of them need a
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40 bioportal API key. The API key can be obtained by creating an account at
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41 bioportal (http://bioportal.bioontology.org/).
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45 CONTACT
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46 =======
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48 Please send any request or comment to mikel.egana.aranguren@gmail.com or
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49 jose.minya@gmail.com.
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53 ACKNOWLEDGEMENTS
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54 ================
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56 The work on get_ontology, extract and get_ontology_view is funded by the
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57 Marie Curie Cofund program of the EU, FP7.
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61 COPYRIGHT AND LICENSE
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62 =====================
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64 get_ontology, extract and get_ontology_view are copyright of Mikel
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65 Egaña Aranguren (2012), and they are distributed under a GPL 3 license
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66 (http://www.gnu.org/licenses/)
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