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annotate NCBO_services/get_ontology_view.xml @ 19:4cd75b0d77af

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get ontology view tool added
author Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
date Wed, 18 Jan 2012 17:59:05 +0100
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Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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1 <tool id="get_ontology_view" name="Get a concrete view of an ontology" version="1.0.1">
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2 <description>Retrieves a view of an ontology using the view id</description>
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3 <command>java -jar ${__tool_data_path__}/shared/jars/get_ontology_view.jar $api_key $ontologyviewid > $output </command>
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5 <inputs>
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6 <param name="api_key" type="text" size="100" label="BioPortal API key" />
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7 <param name="ontologyviewid" type="text" size="100" label="Ontology view ID" />
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8 </inputs>
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9 <outputs>
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10 <data format="text" name="output" />
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11 </outputs>
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12 <tests>
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13 <test>
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14 <param name="api_key"/>
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15 </test>
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16 </tests>
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17 <help>
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19 **What it does**
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21 It retrieves a view from an ontology contained in BioPortal.
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23 **Parameters**
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25 * Bioportal API key: to obtain an API key, open an account in http://bioportal.bioontology.org.
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26 * Ontology view ID: it can be obtained from BioPortal, in the Ontology page, on the views section, by looking at the view URL. For example, it is 41014 for the generic Gene Ontology slim.
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28 **Contact**
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30 Please send any request or comment to mikel.egana.aranguren@gmail.com.
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32 **More information**
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34 http://bioportal.bioontology.org
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36 http://www.bioontology.org/wiki/index.php/BioPortal_REST_services
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38 </help>
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40 </tool>