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comparison NCBO_services/get_ontology.xml @ 21:03bacb9f1562

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bug fixed in get ontology
author Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
date Tue, 28 Feb 2012 21:17:54 +0100
parents 1910c878378c
children
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20:1910c878378c 21:03bacb9f1562
1 <tool id="get_ontology" name="Get ontology by id" version="1.0.3"> 1 <tool id="get_ontology" name="Get ontology by id" version="1.0.3">
2 <description>Retrieves an ontology from bioportal using its id</description> 2 <description>Retrieves an ontology from bioportal using its id</description>
3 <!-- <command>java -jar ${__tool_data_path__}/shared/jars/ncbo_galaxy.jar $api_key $ontology_id > $output </command> --> 3 <!-- <command>java -jar ${__tool_data_path__}/shared/jars/ncbo_galaxy.jar $api_key $ontology_id > $output </command> -->
4 <command> 4 <command>
5 #if $id_opts.id_opts_menu=="id_by_hand" #java -jar ${__tool_data_path__}/shared/jars/ncbo_galaxy.jar $api_key $id_opts.ontology_id > $output 5 #if $id_opts.id_opts_menu=="id_by_hand" #java -jar ${__tool_data_path__}/shared/jars/get_ontology.jar $api_key $id_opts.ontology_id > $output
6 #else #java -jar ${__tool_data_path__}/shared/jars/ncbo_galaxy.jar $api_key $id_opts.ontology_id > $output 6 #else #java -jar ${__tool_data_path__}/shared/jars/get_ontology.jar $api_key $id_opts.ontology_id > $output
7 #end if 7 #end if
8 </command> 8 </command>
9 9
10 <inputs> 10 <inputs>
11 <param name="api_key" type="text" size="100" label="BioPortal API key" /> 11 <param name="api_key" type="text" size="100" label="BioPortal API key" />