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comparison NCBO_services/get_ontology_view.xml @ 19:4cd75b0d77af

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get ontology view tool added
author Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
date Wed, 18 Jan 2012 17:59:05 +0100
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18:0078fe4c89e3 19:4cd75b0d77af
1 <tool id="get_ontology_view" name="Get a concrete view of an ontology" version="1.0.1">
2 <description>Retrieves a view of an ontology using the view id</description>
3 <command>java -jar ${__tool_data_path__}/shared/jars/get_ontology_view.jar $api_key $ontologyviewid > $output </command>
4
5 <inputs>
6 <param name="api_key" type="text" size="100" label="BioPortal API key" />
7 <param name="ontologyviewid" type="text" size="100" label="Ontology view ID" />
8 </inputs>
9 <outputs>
10 <data format="text" name="output" />
11 </outputs>
12 <tests>
13 <test>
14 <param name="api_key"/>
15 </test>
16 </tests>
17 <help>
18
19 **What it does**
20
21 It retrieves a view from an ontology contained in BioPortal.
22
23 **Parameters**
24
25 * Bioportal API key: to obtain an API key, open an account in http://bioportal.bioontology.org.
26 * Ontology view ID: it can be obtained from BioPortal, in the Ontology page, on the views section, by looking at the view URL. For example, it is 41014 for the generic Gene Ontology slim.
27
28 **Contact**
29
30 Please send any request or comment to mikel.egana.aranguren@gmail.com.
31
32 **More information**
33
34 http://bioportal.bioontology.org
35
36 http://www.bioontology.org/wiki/index.php/BioPortal_REST_services
37
38 </help>
39
40 </tool>