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author mikel-egana-aranguren
date Sat, 31 Dec 2011 10:08:28 -0500
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4 =============
5 NCBO Services
6 =============
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10 INSTALLATION
11 ============
12
13 1.- Stop Galaxy.
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15 2.- Copy the .jar files and _lib/ directories to
16 /galaxy-dist/tool-data/shared/jars/
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18 3.- Create directory /galaxy-dist/tools/NCBO_services/
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20 4.- Copy get_ontology.xml to /galaxy-dist/tools/NCBO_services/
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22 5.- Add the following lines to /galaxy-dist/tool_conf.xml:
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24 <section name="NCBO services" id="NCBO_services">
25 <tool file="NCBO_services/get_ontology.xml"/>
26 </section>
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28 6.- Start Galaxy.
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32 USAGE
33 =====
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35 A bioportal API key and an ontology id must be provided. The API key can be
36 obtained by creating an account at bioportal
37 (http://bioportal.bioontology.org/). The id can be obtained in the ontology page
38 (e.g. 1522 for BioPAX, see http://bioportal.bioontology.org/ontologies/1522)
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42 CONTACT
43 =======
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45 Please send any request or comment to mikel.egana.aranguren@gmail.com.
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49 ACKNOWLEDGEMENTS
50 ================
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52 This work is funded by the Marie Curie Cofund program of the EU, FP7.
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56 COPYRIGHT AND LICENSE
57 =====================
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59 Copyright (c) 2011 Mikel Egaña Aranguren.
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61 NCBO Services is free software: you can redistribute it and/or modify
62 it under the terms of the GNU General Public License as published by
63 the Free Software Foundation, either version 3 of the License, or
64 (at your option) any later version.
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66 This program is distributed in the hope that it will be useful,
67 but WITHOUT ANY WARRANTY; without even the implied warranty of
68 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
69 GNU General Public License for more details.
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71 You should have received a copy of the GNU General Public License
72 along with this program. If not, see <http://www.gnu.org/licenses/>.
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