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comparison NCBO_services/get_ontology.xml @ 0:e25b2c00fffd

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author mikel-egana-aranguren
date Sat, 31 Dec 2011 10:08:28 -0500
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children d0cff9cccc25
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-1:000000000000 0:e25b2c00fffd
1 <tool id="get_ontology" name="Get ontology by id" version="1.0.0">
2 <description>Retrieves an ontology from bioportal using its id</description>
3 <command>java -jar ${__tool_data_path__}/shared/jars/ncbo_galaxy.jar $api_key $ontology_id > $output </command>
4 <inputs>
5 <param name="api_key" type="text" size="100" label="BioPortal API key" />
6 <param name="ontology_id" type="text" size="100" label="Ontology ID from bioportal" />
7 </inputs>
8 <outputs>
9 <data format="text" name="output" />
10 </outputs>
11 <tests>
12 <test>
13 <param name="api_key" value="74c12fc6-9423-455a-a619-b94f47d1951b"/>
14 <param name="ontology_id" value="1522"/>
15 </test>
16 </tests>
17 <help>
18
19 **Usage**
20
21 Enter bioportal API key and ontology id (e.g. 1522 for BioPAX), and the ontology will be retrieved.
22
23 **Contact**
24
25 Please send any request or comment to mikel.egana.aranguren@gmail.com.
26
27 </help>
28
29 </tool>