--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/NCBO_services/get_ontology.java	Wed Jan 25 19:49:20 2012 +0100
@@ -0,0 +1,49 @@
+package es.upm.fi.dia.oeg.ncbo.galaxy;
+
+import java.io.BufferedReader;
+import java.io.BufferedWriter;
+import java.io.IOException;
+import java.io.InputStream;
+import java.io.InputStreamReader;
+import java.io.OutputStreamWriter;
+
+import org.apache.http.HttpEntity;
+import org.apache.http.HttpResponse;
+import org.apache.http.client.ClientProtocolException;
+import org.apache.http.client.HttpClient;
+import org.apache.http.client.methods.HttpGet;
+import org.apache.http.client.methods.HttpPost;
+import org.apache.http.impl.client.DefaultHttpClient;
+
+public class get_ontology {
+
+	/**
+	 * @param args
+	 * @throws IOException 
+	 * @throws ClientProtocolException 
+	 */
+	public static void main(String[] args) throws ClientProtocolException, IOException {
+		String api_key = args [0]; 
+		String ontology_id = args [1]; // 1522
+		HttpClient client = new DefaultHttpClient();
+
+		HttpGet get = new HttpGet("http://rest.bioontology.org/bioportal/virtual/download/" + ontology_id + "?apikey=" +api_key);
+		HttpResponse response = client.execute(get);
+		HttpEntity entity = response.getEntity();
+		if (entity != null) {	
+			InputStream instream = entity.getContent();
+			InputStreamReader is=new InputStreamReader(instream);
+			BufferedReader br=new BufferedReader(is);
+			String read=br.readLine();
+			BufferedWriter bw = new BufferedWriter(new OutputStreamWriter(System.out));
+			while(read!=null){
+//			    System.out.println(read);
+				bw.write(read);
+				bw.newLine();
+			    read=br.readLine();
+			}
+			bw.close();
+			instream.close();
+		}
+	}
+}