Mercurial > repos > mikel-egana-aranguren > ncbo_services

diff NCBO_services/get_ontology.xml @ 0:e25b2c00fffd

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first version
author mikel-egana-aranguren
date Sat, 31 Dec 2011 10:08:28 -0500
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children d0cff9cccc25
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/NCBO_services/get_ontology.xml	Sat Dec 31 10:08:28 2011 -0500
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+<tool id="get_ontology" name="Get ontology by id" version="1.0.0">
+	<description>Retrieves an ontology from bioportal using its id</description>
+	<command>java -jar ${__tool_data_path__}/shared/jars/ncbo_galaxy.jar $api_key $ontology_id > $output </command> 
+	<inputs>
+		<param name="api_key" type="text" size="100" label="BioPortal API key" />
+		<param name="ontology_id" type="text" size="100" label="Ontology ID from bioportal" />
+	</inputs>
+	<outputs>
+		<data format="text" name="output" />
+	</outputs>
+	<tests>
+		<test>
+			<param name="api_key" value="74c12fc6-9423-455a-a619-b94f47d1951b"/>
+			<param name="ontology_id" value="1522"/>
+		</test>
+	</tests>
+	<help>
+
+**Usage**
+
+  Enter bioportal API key and ontology id (e.g. 1522 for BioPAX), and the ontology will be retrieved.
+
+**Contact**
+
+  Please send any request or comment to mikel.egana.aranguren@gmail.com.
+
+	</help>
+
+</tool>