=============
			NCBO Services
			=============



INSTALLATION
============

1.- Stop Galaxy.

2.- Copy the .jar files and _lib/ directories to
/galaxy-dist/tool-data/shared/jars/

3.- Create directory /galaxy-dist/tools/NCBO_services/

4.- Copy get_ontology.xml to /galaxy-dist/tools/NCBO_services/

5.- Add the following lines to /galaxy-dist/tool_conf.xml:

  <section name="NCBO services" id="NCBO_services">
    <tool file="NCBO_services/get_ontology.xml"/>
  </section>

6.- Start Galaxy.



USAGE
=====

A bioportal API key and an ontology id must be provided. The API key can be
obtained by creating an account at bioportal
(http://bioportal.bioontology.org/). The id can be obtained in the ontology page
(e.g. 1522 for BioPAX, see http://bioportal.bioontology.org/ontologies/1522)



CONTACT
=======

Please send any request or comment to mikel.egana.aranguren@gmail.com.



ACKNOWLEDGEMENTS
================

This work is funded by the Marie Curie Cofund program of the EU, FP7.



COPYRIGHT AND LICENSE
=====================

Copyright (c) 2011 Mikel Egaña Aranguren. 

NCBO Services is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program.  If not, see <http://www.gnu.org/licenses/>.