Mercurial > repos > mikel-egana-aranguren > oppl

annotate src/MergeImportedOntologies.java @ 23:707c3654df66 draft default tip

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author Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
date Thu, 25 Oct 2012 17:49:48 +0200
parents cc270db37d33
children
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c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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1 package es.upm.cbgp.opplquery.oppl.galaxy;
c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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3 import java.io.IOException;
c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
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4
c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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5 import org.semanticweb.owlapi.model.OWLOntologyCreationException;
c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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6 import org.semanticweb.owlapi.model.OWLOntologyStorageException;
c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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8 import es.upm.fi.dia.oeg.oppl.galaxy.GalaxyOWLAPI;
c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
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c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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10 public class MergeImportedOntologies {
c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
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12 /**
c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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13 * @param args
c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
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14 * @throws OWLOntologyCreationException
c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
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15 * @throws IOException
c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
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parents:
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16 * @throws OWLOntologyStorageException
c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
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17 */
c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
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18 public static void main(String[] args) throws OWLOntologyCreationException, OWLOntologyStorageException, IOException {
c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
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19 String OWLFilePath = args [0];
c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
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20 String MergedOntologyNewURI = args [1];
c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
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21 // String OWLFilePath = "/home/mikel/UPM/OPPL_galaxy/OPPL/OPPL/test-data/ontology/imports/merge_test.owl";
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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22 // String MergedOntologyNewURI = "http://cbgp.upm.es/merged.owl";
c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
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24 // Create the manager
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25 GalaxyOWLAPI galaxyowlapi = new GalaxyOWLAPI();
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c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
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27 // Load the main ontology and hope for the imported URIs to be resolvable
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28 galaxyowlapi.loadMainOntology(OWLFilePath);
c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
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c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
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30 // Merge and save
c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
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32 if(MergedOntologyNewURI.isEmpty()){
c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
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33 MergedOntologyNewURI = "http://cbgp.upm.es/BiologicalInformatics/OPPLGalaxy/merged.owl";
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34 }
c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
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c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
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36 galaxyowlapi.merge(MergedOntologyNewURI);
c9e01f86b07c New tool added for merging imported ontologies (GalaxyOWLAPI and README changed and test ontologies added accordingly). Memory settings changed in all the tools XML files
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37 galaxyowlapi.saveOntology(true);
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38 }
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39 }