Mercurial > repos > mikel-egana-aranguren > oppl
comparison install.sh @ 20:46257c870179 draft
New installation procedure added
| author | Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> |
|---|---|
| date | Mon, 08 Oct 2012 12:55:08 +0200 |
| parents | cc270db37d33 |
| children |
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| 19:cc270db37d33 | 20:46257c870179 |
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| 1 #!/bin/sh | 1 #!/bin/sh |
| 2 | 2 |
| 3 # Shell script for installing OPPL-Galaxy | 3 # Shell script for installing OPPL-Galaxy |
| 4 | |
| 5 # This script assumes that it is living in galaxy-dist/tools/oppl/ | |
| 6 # if that is not the case, simply edit the var $jars bellow | |
| 7 | |
| 8 jars="../../tool-data/shared/jars/" | |
| 9 | |
| 10 cp oppl_galaxy.jar $jars | |
| 11 cp inference.jar $jars | |
| 12 cp query.jar $jars | |
| 13 cp oppl_query.jar $jars | |
| 14 cp merge.jar $jars | |
| 15 | |
| 16 cp -r FaCT++-linux-v1.5.2 $jars | |
| 17 cp -r oppl_galaxy_lib $jars | |
| 18 cp -r inference_lib $jars | |
| 19 cp -r query_lib $jars | |
| 20 cp -r oppl_query_lib $jars | |
| 21 cp -r merge_lib $jars | |
| 22 | |
| 23 echo 'Now you should edit /galaxy-dist/tool_conf.xml:' | |
| 24 echo ' <section name="Ontology Pre Processor Language" id="oppl">' | |
| 25 echo ' <tool file="oppl/oppl.xml"/>' | |
| 26 echo ' <tool file="oppl/inference.xml"/>' | |
| 27 echo ' <tool file="oppl/query.xml"/>' | |
| 28 echo ' <tool file="oppl/oppl_query.xml"/>' | |
| 29 echo ' <tool file="oppl/merge.xml"/>' | |
| 30 echo ' </section>' | |
| 31 | |
| 32 # Foreseen feature: directly edit /galaxy-dist/tool_conf.xml with sed or something |