Mercurial > repos > mikel-egana-aranguren > oppl
diff OPPL/README @ 9:14bfd77f8520
Interface improved (Imports first) and proper handling of import/merge options added
author | Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> |
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date | Tue, 18 Oct 2011 10:30:16 +0200 |
parents | 40adbcb2a7cc |
children | 3f31c0eb7539 |
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--- a/OPPL/README Tue Oct 11 11:09:52 2011 +0200 +++ b/OPPL/README Tue Oct 18 10:30:16 2011 +0200 @@ -13,11 +13,11 @@ 1.- Stop galaxy. 2.- Copy oppl_galaxy_tool.jar, FaCT++-linux-v1.5.2/ FaCT++-OSX-v1.5.2/ -and oppl_galaxy_tool_lib/ to /galaxy-dist/tool-data/shared/jars/. +and oppl_galaxy_tool_lib/ to /galaxy-dist/tool-data/shared/jars/ -3.- Create directory /galaxy-dist/tools/OPPL/. +3.- Create directory /galaxy-dist/tools/OPPL/ -4.- Copy oppl.xml to /galaxy-dist/tools/OPPL/. +4.- Copy oppl.xml to /galaxy-dist/tools/OPPL/ 5.- Add the following lines to /galaxy-dist/tool_conf.xml: @@ -43,7 +43,12 @@ Ontology Pre Processor Language >> Execute an OPPL file against an OWL file -An ontology produced by another galaxy tools can also be used +An ontology produced by another galaxy tools can also be used. + +Test.oppl and test.owl can be used as examples. More OPPL-Galaxy +examples can be obtained at http://miuras.inf.um.es/OPPL-Galaxy/, and +general OPPL script that may be useful to use with OPPL-Galaxy can be +obtained at http://oppl2.sourceforge.net/taggedexamples/. @@ -68,9 +73,6 @@ http://wiki.g2.bx.psu.edu/Future/Job%20Failure%20When%20stderr -OBO rendering does not work properly if the URIs lack the fragment or -if an object property lacks an rdfs:label. - TESTS @@ -122,11 +124,7 @@ You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>. -OPPL API, OWL API, Pellet, HermiT, FaCT++ and OBOformat have their own -licenses. - -Galaxy is distributed as open source under the conditions of the -Academic Free License (http://www.opensource.org/licenses/academic.php). +OPPL API, OWL API, Pellet, HermiT, and FaCT++ have their own licenses.