Mercurial > repos > mikel-egana-aranguren > oppl
diff OPPL/oppl.xml @ 4:4f60202c58d9
Added option to push inferred subsumption axioms into output ontology
| author | Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> |
|---|---|
| date | Wed, 14 Sep 2011 19:52:06 +0200 |
| parents | 5255f1333cc4 |
| children | 68935f90c2db |
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--- a/OPPL/oppl.xml Wed Sep 07 10:46:29 2011 +0200 +++ b/OPPL/oppl.xml Wed Sep 14 19:52:06 2011 +0200 @@ -1,6 +1,7 @@ -<tool id="oppl" name="Execute an OPPL file against an ontology" version="1.0.1"> +<tool id="oppl" name="Execute an OPPL file against an ontology" version="1.0.2"> <description>It executes an OPPL script against the input ontology and generates a new ontology with the changes described in the OPPL script</description> - <command>java -jar ${__tool_data_path__}/shared/jars/oppl_galaxy_tool.jar $input $OPPL $format > $output </command> + <command>java -jar ${__tool_data_path__}/shared/jars/oppl_galaxy_tool.jar $input $OPPL $format $inferred > $output </command> + <!--<command>java -Xmx7000M -Xms250M -DentityExpansionLimit=1000000000 -jar ${__tool_data_path__}/shared/jars/oppl_galaxy_tool.jar $input $OPPL $format > $output </command>--> <inputs> <param format="text" name="input" type="data" label="Input ontology file"/> <param format="text" name="OPPL" type="data" label="OPPL file"/> @@ -8,6 +9,7 @@ <option value="OWL" selected="true">OWL</option> <option value="OBO">OBO</option> </param> + <param name="inferred" type="boolean" value="False" truevalue="Add_inferred" falsevalue="Gora_ni" label="Add inferred subsumption axioms to output ontology"/> </inputs> <outputs> <data format="text" name="output" /> @@ -18,6 +20,7 @@ <param name="input" value="test.owl"/> <param name="OPPL" value="test.oppl"/> <param name="format" value="OWL"/> + <param name="inferred" value="False"/> <output name="out_file" file="test_new.owl"/> </test> </tests> @@ -50,7 +53,7 @@ **More information** - http://oppl2.sourceforge.net/ + http://oppl.sf.net/ http://owlapi.sourceforge.net/ @@ -58,12 +61,6 @@ http://clarkparsia.com/pellet -**Features that will be implemented soon** - - OWL import closure. - - Choose reasoner (Right now only Pellet is available). - **Contact** Please send any request or comment to mikel.egana.aranguren@gmail.com.