Mercurial > repos > mikel-egana-aranguren > oppl
diff OPPL/README @ 13:7e6604a5ee55
New query tool added
author | Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> |
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date | Thu, 29 Mar 2012 14:49:22 +0200 |
parents | 6ca67b155e32 |
children | 622cde484f4c |
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--- a/OPPL/README Thu Mar 22 14:37:46 2012 +0100 +++ b/OPPL/README Thu Mar 29 14:49:22 2012 +0200 @@ -10,21 +10,25 @@ /galaxy-dist/tool-data/shared/jars/: oppl_galaxy_tool.jar -oppl_galax_lib/ +inference.jar +query.jar +oppl_galaxy_lib/ +inference_lib/ +query_lib/ FaCT++-linux-v1.5.2/ FaCT++-OSX-v1.5.2/ -inference.jar -inference_lib/ - + 3.- Create directory /galaxy-dist/tools/OPPL/ -4.- Copy oppl.xml and inference.xml to /galaxy-dist/tools/OPPL/ +4.- Copy oppl.xml, inference.xml and query.xml to +/galaxy-dist/tools/OPPL/ 5.- Add the following lines to /galaxy-dist/tool_conf.xml: <section name="Ontology Pre Processor Language" id="oppl"> <tool file="OPPL/oppl.xml"/> <tool file="OPPL/inference.xml"/> + <tool file="OPPL/query.xml"/> </section> 6.- Start Galaxy. @@ -34,24 +38,28 @@ FORESEEN FEATURES ================= -OPPL: +General (OPPL, Inference, Query): - Support for processing ontologies that import other ontologies loaded in galaxy. -- Rendering definition (URI fragment, label, etc). +- Entities rendering definition (URI fragment, rdfs:label, QName, etc). + +- OWLLink and Racer support. + + +OPPL: - Standalone OPPL assertions parsing (e.g. ADD phagocyte subClassOf cell). -- OWLLink and Racer support. +- Other output formats apart from RDF/XML. Inference: -- DataPropertyAssertion, DataPropertyHierarchy, DifferentIndividuals, -... - +- Support for DataPropertyAssertion, DataPropertyHierarchy, +DifferentIndividuals, ... @@ -87,10 +95,11 @@ Copyright (c) 2011 Mikel EgaƱa Aranguren. -(OPPL|Inference)-Galaxy is free software: you can redistribute it and/or -modify it under the terms of the GNU General Public License as published -by the Free Software Foundation, either version 3 of the License, or (at -your option) any later version. +(OPPL|Inference|Query)-Galaxy +is free software: you can redistribute it and/or modify it under the +terms of the GNU General Public License as published by the Free +Software Foundation, either version 3 of the License, or (at your +option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of