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annotate tools/SADI-Docker/SADI-Docker-SPARQLGalaxy.xml @ 0:54c48f9ca32b default tip

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first release
author Mikel Egana <mikel.egana.aranguren@gmail.com>
date Fri, 04 Sep 2015 23:24:45 +0200
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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1 <tool id="SADI-Docker-SPARQLGalaxy" name="SADI - Execute an SPARQL query against an RDF file" version="0.1">
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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2 <description>It executes an SPARQL query against the input RDF file and generates an HTML file with the variables and bound entities</description>
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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3 <requirements>
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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4 <container type="docker">mikeleganaaranguren/sadi:v6</container>
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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5 </requirements>
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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6 <command>
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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7 python /sadi/sparql.py $ontology "$pasted_query" $out_format > $output 2>/dev/null
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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8 </command>
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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9 <inputs>
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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10 <param name="ontology" type="data" format="rdf" label="Input RDF file"/>
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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11 <param name="pasted_query" type="text" area="True" size="10x50" label="SPARQL Query" value="SELECT * WHERE { ?s ?p ?o }">
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12 <sanitizer sanitize="False"/>
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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13 </param>
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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14 <param name="out_format" type="select" label="Output format" help="">
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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15 <option value="html" selected="true">HTML</option>
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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16 <option value="tab">TABULAR</option>
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17 </param>
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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18
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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19 </inputs>
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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20 <outputs>
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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21 <data format="html" name="output">
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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22 <change_format>
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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23 <when input="out_format" value="tab" format="tabular" />
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24 </change_format>
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25 </data>
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26 </outputs>
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27 <help>
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28
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29 **Usage**
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30
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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31 An RDF file (in any format that RDFLib can accept) and a SPARQL query are needed.
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32
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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33 **About**
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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34
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Mikel Egana <mikel.egana.aranguren@gmail.com>
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35 More information and contact: http://github.com/mikel-egana-aranguren/SADI-Docker-Galaxy.
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36
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37 </help>
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38
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39 </tool>