Mercurial > repos > mikel-egana-aranguren > sadi_docker_workflow

{
    "a_galaxy_workflow": "true",
    "annotation": "The workflow answers the following question: Given a set of UniProt proteins, which ones are related to PubMed abstracts containing the term ``brain'', and what are they KEGG entries? The workflow starts from a simple list of UniProt identifiers, and retrieves different datasets from a regular SADI service (to obtain KEGG entries) and a set of 3 OpenLifeData2SADI services (to obtain PubMed abstracts). The results are then merged and queried to obtain the KEGG entries of proteins that are related to PubMed abstracts that contain the term",
    "format-version": "0.1",
    "name": "SADI-Docker use case",
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            "annotation": "Convert white spaces to tabs, so that Galaxy recognises the list of UniProt IDs as a column",
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            "annotation": "Add a column with the URI of the SADI service input OWL class",
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            "annotation": "Execute SADI service to obtain HGNC entries",
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            "annotation": "Merge all the inputs and outputs in single RDF graph: SADI only decorates inputs with new triples, so we can keep track of the whole process via URIs",
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            "annotation": "Query the merged RDF graph with the actual question",
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            "name": "SADI - Execute an SPARQL query against an RDF file",
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    "uuid": "8796e5be-1c91-4f91-9946-02a09a79401d"
}
author	Mikel Egana <mikel.egana.aranguren@gmail.com>
date	Mon, 07 Sep 2015 19:18:27 +0200
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