Mercurial > repos > mikel-egana-aranguren > sadi_generic
changeset 0:930ab9823773 draft
First release
| author | Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> |
|---|---|
| date | Wed, 04 Dec 2013 09:01:28 +0100 |
| parents | |
| children | bb17b69a74c5 |
| files | README sadi_generic.xml sadi_generic_client.jar |
| diffstat | 3 files changed, 82 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README Wed Dec 04 09:01:28 2013 +0100 @@ -0,0 +1,56 @@ +ABOUT +===== + +This is a client for SADI services. A SADI service consumes and ouputs +RDF. Therefore, if you provide the service URI and a correct RDF input, +this client will infer if the RDF is really compliant with the service +and submit it, obtaining the output RDF. + +This client is part of a larger project that provides SADI services as +Galaxy tools, SADI-Galaxy. + +More information: + +http://github.com/mikel-egana-aranguren/SADI-Galaxy +http://sadiframework.org + + + +INSTALLATION +============ + +Download and uncompress anywhere you like, and then: + +1.- Stop Galaxy. + +2.- Copy sadi_generic.jar galaxy-dist/tool-data/shared/jars/ + +3.- Create directory galaxy-dist/tools/SADI/ + +4.- Copy sadi_generic.xml to galaxy-dist/tools/SADI/ + +5.- Add the following lines to /galaxy-dist/tool_conf.xml: + + <section name="SADI services" id="SADI"> + <tool file="SADI/sadi_generic.xml"/> + </section> + +6.- Start Galaxy. + +(You can also install automatically from the tool shed but make +sure to copy the jar to right place) + + + +CONTACT +======= + +Please send any request or comment to mikel.egana.aranguren@gmail.com. + + + +ACKNOWLEDGEMENTS +================ + +This work is funded by the Marie Curie Cofund program of the EU, FP7, +and the Isaac Peral Program.
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/sadi_generic.xml Wed Dec 04 09:01:28 2013 +0100 @@ -0,0 +1,26 @@ +<tool id="sadi_generic" name="SADI services generic caller" version="0.0.1"> + <description>Send any input RDF to any SADI service</description> + + <!-- for debugging remove 2>/dev/null --> + + <command>java -Xmx2000M -Xms250M -jar ${__tool_data_path__}/shared/jars/sadi_generic_client.jar $url $input > $output 2>/dev/null</command> + + <inputs> + <param name="url" type="text" size="200" value="" label="Service URL"/> + <param name="input" type="data" label="RDF input for SADI service"/> + </inputs> + <outputs> + <data format="text" name="output" /> + </outputs> + <help> + + **What it does** + + Given an RDF input and a SADI service URL, infers whether the RDF complies with the service's input OWL Class and if so executes it, obtaining an ouput RDF from the SADI service. + + **About** + + More information and contact: http://github.com/mikel-egana-aranguren/SADI-Galaxy + + </help> +</tool> \ No newline at end of file