Mercurial > repos > mikel-egana-aranguren > sparql_galaxy

annotate README @ 1:117a4b4c002d draft

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Added README but installation procedure not tested yet, pushed for backup
author Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
date Thu, 25 Oct 2012 18:35:25 +0200
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children b8bf1af83841
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117a4b4c002d Added README but installation procedure not tested yet, pushed for backup
Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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1 INSTALLATION VIA MERCURIAL (RECOMMENDED)
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2 ========================================
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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4 1.- Stop Galaxy.
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6 2.- Move to galaxy-dist/tools/
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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8 3.- Clone the SPARQL-Galaxy repository with mercurial:
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10 hg clone http://mikel-egana-aranguren@toolshed.g2.bx.psu.edu/repos/mikel-egana-aranguren/sparql_galaxy
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12 4.- Move to galaxy-dist/tools/sparql_galaxy and copy SPARQLGalaxy.jar to galaxy-dist/tool-data/shared/jars/
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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14 5.- Add the following lines to /galaxy-dist/tool_conf.xml:
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16 <section name="SPARQL-Galaxy" id="SPARQLGalaxy">
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17 <tool file="sparql_galaxy/SPARQLGalaxy.xml"/>
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18 </section>
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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20 6.- Start Galaxy.
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22 For updates:
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24 1.- Stop Galaxy.
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26 2.- Move to galaxy-dist/tools/sparql_galaxy/
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28 3.- Pull changes and update working copy with mercurial:
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30 hg pull
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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31 hg update
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33 4.- Copy SPARQLGalaxy.jar to galaxy-dist/tool-data/shared/jars/
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35 5.- Only edit galaxy-dist/tool_conf.xml in case a tool (an XML file) has been added/removed.
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37 6.- Start Galaxy.
117a4b4c002d Added README but installation procedure not tested yet, pushed for backup
Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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41 MANUAL INSTALLATION (DIRECT DOWNLOAD)
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42 =====================================
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44 Download and uncompress anywhere you like, and then:
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46 1.- Stop Galaxy.
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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48 2.- SPARQLGalaxy.jar to galaxy-dist/tool-data/shared/jars/
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50 3.- Create directory galaxy-dist/tools/sparql_galaxy/
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52 4.- Copy SPARQLGalaxy.xml to galaxy-dist/tools/sparql_galaxy/
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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54 5.- Add the following lines to /galaxy-dist/tool_conf.xml:
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56 <section name="SPARQL-Galaxy" id="SPARQLGalaxy">
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57 <tool file="sparql_galaxy/SPARQLGalaxy.xml"/>
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58 </section>
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60 6.- Start Galaxy.
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64 CONTACT
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65 =======
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67 Please send any request or comment to mikel.egana.aranguren@gmail.com.
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71 ACKNOWLEDGEMENTS
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72 ================
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74 This work is funded by the Marie Curie Cofund program of the EU, FP7,
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75 and the Isaac Peral Program.
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79 COPYRIGHT AND LICENSE
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80 =====================
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82 Copyright (c) 2011 Mikel Egaña Aranguren, Alejandro Rodriguez Gonzalez
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84 SPARQL-Galaxy is free software: you can redistribute it and/or modify it under the
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85 terms of the GNU General Public License as published by the Free
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86 Software Foundation, either version 3 of the License, or (at your
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87 option) any later version.
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89 This program is distributed in the hope that it will be useful,
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90 but WITHOUT ANY WARRANTY; without even the implied warranty of
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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91 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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92 GNU General Public License for more details.
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94 You should have received a copy of the GNU General Public License
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95 along with this program. If not, see <http://www.gnu.org/licenses/>.
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97 JENA has its own license.
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99