Mercurial > repos > mikel-egana-aranguren > sparql_galaxy
comparison README @ 1:117a4b4c002d draft
Added README but installation procedure not tested yet, pushed for backup
| author | Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> |
|---|---|
| date | Thu, 25 Oct 2012 18:35:25 +0200 |
| parents | |
| children | b8bf1af83841 |
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| 0:137f9a4a6337 | 1:117a4b4c002d |
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| 1 INSTALLATION VIA MERCURIAL (RECOMMENDED) | |
| 2 ======================================== | |
| 3 | |
| 4 1.- Stop Galaxy. | |
| 5 | |
| 6 2.- Move to galaxy-dist/tools/ | |
| 7 | |
| 8 3.- Clone the SPARQL-Galaxy repository with mercurial: | |
| 9 | |
| 10 hg clone http://mikel-egana-aranguren@toolshed.g2.bx.psu.edu/repos/mikel-egana-aranguren/sparql_galaxy | |
| 11 | |
| 12 4.- Move to galaxy-dist/tools/sparql_galaxy and copy SPARQLGalaxy.jar to galaxy-dist/tool-data/shared/jars/ | |
| 13 | |
| 14 5.- Add the following lines to /galaxy-dist/tool_conf.xml: | |
| 15 | |
| 16 <section name="SPARQL-Galaxy" id="SPARQLGalaxy"> | |
| 17 <tool file="sparql_galaxy/SPARQLGalaxy.xml"/> | |
| 18 </section> | |
| 19 | |
| 20 6.- Start Galaxy. | |
| 21 | |
| 22 For updates: | |
| 23 | |
| 24 1.- Stop Galaxy. | |
| 25 | |
| 26 2.- Move to galaxy-dist/tools/sparql_galaxy/ | |
| 27 | |
| 28 3.- Pull changes and update working copy with mercurial: | |
| 29 | |
| 30 hg pull | |
| 31 hg update | |
| 32 | |
| 33 4.- Copy SPARQLGalaxy.jar to galaxy-dist/tool-data/shared/jars/ | |
| 34 | |
| 35 5.- Only edit galaxy-dist/tool_conf.xml in case a tool (an XML file) has been added/removed. | |
| 36 | |
| 37 6.- Start Galaxy. | |
| 38 | |
| 39 | |
| 40 | |
| 41 MANUAL INSTALLATION (DIRECT DOWNLOAD) | |
| 42 ===================================== | |
| 43 | |
| 44 Download and uncompress anywhere you like, and then: | |
| 45 | |
| 46 1.- Stop Galaxy. | |
| 47 | |
| 48 2.- SPARQLGalaxy.jar to galaxy-dist/tool-data/shared/jars/ | |
| 49 | |
| 50 3.- Create directory galaxy-dist/tools/sparql_galaxy/ | |
| 51 | |
| 52 4.- Copy SPARQLGalaxy.xml to galaxy-dist/tools/sparql_galaxy/ | |
| 53 | |
| 54 5.- Add the following lines to /galaxy-dist/tool_conf.xml: | |
| 55 | |
| 56 <section name="SPARQL-Galaxy" id="SPARQLGalaxy"> | |
| 57 <tool file="sparql_galaxy/SPARQLGalaxy.xml"/> | |
| 58 </section> | |
| 59 | |
| 60 6.- Start Galaxy. | |
| 61 | |
| 62 | |
| 63 | |
| 64 CONTACT | |
| 65 ======= | |
| 66 | |
| 67 Please send any request or comment to mikel.egana.aranguren@gmail.com. | |
| 68 | |
| 69 | |
| 70 | |
| 71 ACKNOWLEDGEMENTS | |
| 72 ================ | |
| 73 | |
| 74 This work is funded by the Marie Curie Cofund program of the EU, FP7, | |
| 75 and the Isaac Peral Program. | |
| 76 | |
| 77 | |
| 78 | |
| 79 COPYRIGHT AND LICENSE | |
| 80 ===================== | |
| 81 | |
| 82 Copyright (c) 2011 Mikel Egaña Aranguren, Alejandro Rodriguez Gonzalez | |
| 83 | |
| 84 SPARQL-Galaxy is free software: you can redistribute it and/or modify it under the | |
| 85 terms of the GNU General Public License as published by the Free | |
| 86 Software Foundation, either version 3 of the License, or (at your | |
| 87 option) any later version. | |
| 88 | |
| 89 This program is distributed in the hope that it will be useful, | |
| 90 but WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 91 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | |
| 92 GNU General Public License for more details. | |
| 93 | |
| 94 You should have received a copy of the GNU General Public License | |
| 95 along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 96 | |
| 97 JENA has its own license. | |
| 98 | |
| 99 |