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annotate README @ 28:184d14e4270d

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Update to Miller Lab devshed revision 4ede22dd5500
author Richard Burhans <burhans@bx.psu.edu>
date Wed, 17 Jul 2013 12:46:46 -0400
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1 Source code for the executables needed by these tools can be found in
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2 the genome_diversity directory.
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4 Additionally, you'll need the following python modules:
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5 matplotlib (we used version 1.1.0) http://pypi.python.org/packages/source/m/matplotlib/
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6 mechanize (we used version 0.2.5) http://pypi.python.org/packages/source/m/mechanize/
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7 networkx (we used version 1.6) http://pypi.python.org/packages/source/n/networkx/
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8 fisher (we used version 0.1.4) http://pypi.python.org/packages/source/f/fisher/
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9
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10 And the following software:
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11 ADMIXTURE (we used version 1.22) http://www.genetics.ucla.edu/software/admixture/
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12 EIGENSOFT (we used version 3.0) http://genepath.med.harvard.edu/~reich/Software.htm
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13 PHAST (we used version 1.2.1) http://compgen.bscb.cornell.edu/phast/
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14 QuickTree (we used version 1.1) http://www.sanger.ac.uk/resources/software/quicktree/
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16 Images used in the tools' documentation are located in the static/images
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17 directory. Please copy these to the static/images directory in your
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18 Galaxy installation.