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annotate README @ 10:9b92372de9f6

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rename snp to gsSnp, sap to gdSap
author Richard Burhans <burhans@bx.psu.edu>
date Tue, 04 Sep 2012 12:49:53 -0400
parents 626b714f72bb
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1 Source code for the executables needed by these tools can be found in
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2 the genome_diversity directory.
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3
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4 Additionally, you'll need the following python modules:
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5 matplotlib (we used version 1.1.0) http://pypi.python.org/packages/source/m/matplotlib/
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6 mechanize (we used version 0.2.5) http://pypi.python.org/packages/source/m/mechanize/
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7 networkx (we used version 1.6) http://pypi.python.org/packages/source/n/networkx/
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8
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9 And the following software:
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10 ADMIXTURE (we used version 1.22) http://www.genetics.ucla.edu/software/admixture/
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11 EIGENSOFT (we used version 3.0) http://genepath.med.harvard.edu/~reich/Software.htm
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12 PHAST (we used version 1.2.1) http://compgen.bscb.cornell.edu/phast/
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13 QuickTree (we used version 1.1) http://www.sanger.ac.uk/resources/software/quicktree/