annotate tool-data/gd.restriction_enzymes.txt.sample @ 25:cba0d7a63b82

workaround for gd_genotype datatype admix shift int -> float
author Richard Burhans <burhans@bx.psu.edu>
date Wed, 29 May 2013 13:49:19 -0400
parents 2c498d40ecde
children
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miller-lab
parents:
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1 Acc65I - GGTACC Acc65I
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miller-lab
parents:
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2 AccB7I - CCANNNNNTGG AccB7I
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miller-lab
parents:
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3 AccI - GT(A/C)(G/T)AC AccI
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miller-lab
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4 AccIII - TCCGGA AccIII
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miller-lab
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5 AcyI - G(A/G)CG(C/T)C AcyI
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miller-lab
parents:
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6 AgeI - ACCGGT AgeI
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miller-lab
parents:
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7 AluI - AGCT AluI
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miller-lab
parents:
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8 Alw44I - GTGCAC Alw44I
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miller-lab
parents:
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9 ApaI - GGGCCC ApaI
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miller-lab
parents:
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10 AvaI - C(C/T)CG(A/G)G AvaI
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miller-lab
parents:
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11 AvaII - GG(A/T)CC AvaII
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miller-lab
parents:
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12 BalI - TGGCCA BalI
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miller-lab
parents:
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13 BamHI - GGATCC BamHI
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miller-lab
parents:
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14 BanI - GG(C/T)(A/G)CC BanI
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miller-lab
parents:
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15 BanII - G(A/G)GC(C/T)C BanII
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miller-lab
parents:
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16 BbuI - GCATGC BbuI
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miller-lab
parents:
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17 BclI - TGATCA BclI
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miller-lab
parents:
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18 BglI - GCCNNNNNGGC BglI
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miller-lab
parents:
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19 BglII - AGATCT BglII
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miller-lab
parents:
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20 BsaMI - GAATGC BsaMI
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miller-lab
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21 BsaOI - CG(A/G)(C/T)CG BsaOI
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miller-lab
parents:
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22 Bsp1286I - G(A/G/T)GC(A/C/T)C Bsp1286I
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miller-lab
parents:
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23 BsrBRI - GATNNNNATC BsrBRI
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miller-lab
parents:
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24 BsrSI - ACTGG BsrSI
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miller-lab
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25 BssHII - GCGCGC BssHII
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miller-lab
parents:
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26 Bst98I - CTTAAG Bst98I
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miller-lab
parents:
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27 BstEII - GGTNACC BstEII
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miller-lab
parents:
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28 BstOI - CC(A/T)GG BstOI
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miller-lab
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29 BstXI - CCANNNNNNTGG BstXI
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miller-lab
parents:
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30 BstZI - CGGCCG BstZI
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miller-lab
parents:
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31 Bsu36I - CCTNAGG Bsu36I
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miller-lab
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32 CfoI - GCGC CfoI
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miller-lab
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33 ClaI - ATCGAT ClaI
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miller-lab
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34 Csp45I - TTCGAA Csp45I
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miller-lab
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35 CspI - CGG(A/T)CCG CspI
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miller-lab
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36 DdeI - CTNAG DdeI
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miller-lab
parents:
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37 DpnI - GATC DpnI
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miller-lab
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38 DraI - TTTAAA DraI
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miller-lab
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39 EclHKI - GACNNNNNGTC EclHKI
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miller-lab
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40 Eco47III - AGCGCT Eco47III
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miller-lab
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41 Eco52I - CGGCCG Eco52I
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miller-lab
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42 Eco72I - CACGTG Eco72I
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miller-lab
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43 EcoRI - GAATTC EcoRI
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miller-lab
parents:
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44 EcoRV - GATATC EcoRV
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miller-lab
parents:
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45 HaeII - (A/G)GCGC(C/T) HaeII
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miller-lab
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46 HaeIII - GGCC HaeIII
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miller-lab
parents:
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47 HhaI - GCGC HhaI
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miller-lab
parents:
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48 HincII - GT(C/T)(A/G)AC HincII
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miller-lab
parents:
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49 HindIII - AAGCTT HindIII
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miller-lab
parents:
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50 HinfI - GANTC HinfI
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miller-lab
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51 HpaI - GTTAAC HpaI
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miller-lab
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52 HpaII - CCGG HpaII
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miller-lab
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53 Hsp92I - G(A/G)CG(C/T)C Hsp92I
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miller-lab
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54 Hsp92II - CATG Hsp92II
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miller-lab
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55 I-PpoI - TAACTATGACTCTCTTAAGGTAGCCAAAT I-PpoI
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miller-lab
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56 KpnI - GGTACC KpnI
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miller-lab
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57 MboI - GATC MboI
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miller-lab
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58 MluI - ACGCGT MluI
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miller-lab
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59 MspA1I - C(A/C)GC(G/T)G MspA1I
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miller-lab
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60 MspI - CCGG MspI
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miller-lab
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61 NaeI - GCCGGC NaeI
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miller-lab
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62 NarI - GGCGCC NarI
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miller-lab
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63 NciI - CC(C/G)GG NciI
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miller-lab
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64 NcoI - CCATGG NcoI
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miller-lab
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65 NdeI - CATATG NdeI
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miller-lab
parents:
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66 NgoMIV - GCCGGC NgoMIV
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miller-lab
parents:
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67 NheI - GCTAGC NheI
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miller-lab
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68 NotI - GCGGCCGC NotI
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miller-lab
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69 NruI - TCGCGA NruI
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miller-lab
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70 NsiI - ATGCAT NsiI
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miller-lab
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71 PstI - CTGCAG PstI
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miller-lab
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72 PvuI - CGATCG PvuI
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miller-lab
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73 PvuII - CAGCTG PvuII
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miller-lab
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74 RsaI - GTAC RsaI
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miller-lab
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75 SacI - GAGCTC SacI
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miller-lab
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76 SacII - CCGCGG SacII
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miller-lab
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77 SalI - GTCGAC SalI
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miller-lab
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78 Sau3AI - GATC Sau3AI
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miller-lab
parents:
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79 Sau96I - GGNCC Sau96I
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miller-lab
parents:
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80 ScaI - AGTACT ScaI
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miller-lab
parents:
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81 SfiI - GGCCNNNNNGGCC SfiI
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miller-lab
parents:
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82 SgfI - GCGATCGC SgfI
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miller-lab
parents:
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83 SinI - GG(A/T)CC SinI
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miller-lab
parents:
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84 SmaI - CCCGGG SmaI
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miller-lab
parents:
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85 SnaBI - TACGTA SnaBI
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miller-lab
parents:
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86 SpeI - ACTAGT SpeI
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miller-lab
parents:
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87 SphI - GCATGC SphI
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miller-lab
parents:
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88 SspI - AATATT SspI
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miller-lab
parents:
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89 StuI - AGGCCT StuI
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miller-lab
parents:
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90 StyI - CC(A/T)(A/T)GG StyI
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miller-lab
parents:
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91 TaqI - TCGA TaqI
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miller-lab
parents:
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92 Tru9I - TTAA Tru9I
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miller-lab
parents:
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93 Tth111I - GACNNNGTC Tth111I
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miller-lab
parents:
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94 VspI - ATTAAT VspI
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miller-lab
parents:
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95 XbaI - TCTAGA XbaI
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miller-lab
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96 XhoI - CTCGAG XhoI
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miller-lab
parents:
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97 XhoII - (A/G)GATC(C/T) XhoII
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miller-lab
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98 XmaI - CCCGGG XmaI
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miller-lab
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99 XmnI - GAANNNNTTC XmnI