Mercurial > repos > miller-lab > genome_diversity
comparison diversity_pi.xml @ 24:248b06e86022
Added gd_genotype datatype. Modified tools to support new datatype.
| author | Richard Burhans <burhans@bx.psu.edu> |
|---|---|
| date | Tue, 28 May 2013 16:24:19 -0400 |
| parents | |
| children | 8997f2ca8c7a |
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| 23:66a183c44dd5 | 24:248b06e86022 |
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| 1 <tool id="gd_diversity_pi" name="Diversity" version="1.0.0"> | |
| 2 <description>&pi;</description> | |
| 3 | |
| 4 <command interpreter="python"> | |
| 5 diversity_pi.py "$input" "$coverage_input" "$indiv_input" "$min_coverage" "$output" | |
| 6 #for $individual, $individual_col in zip($input.dataset.metadata.individual_names, $input.dataset.metadata.individual_columns) | |
| 7 #set $arg = '%s:%s' % ($individual_col, $individual) | |
| 8 "$arg" | |
| 9 #end for | |
| 10 </command> | |
| 11 | |
| 12 <inputs> | |
| 13 <param name="input" type="data" format="gd_snp" label="SNP dataset" /> | |
| 14 <param name="coverage_input" type="data" format="interval" label="Coverage dataset" /> | |
| 15 <param name="indiv_input" type="data" format="gd_indivs" label="Population Individuals" /> | |
| 16 <param name="min_coverage" type="integer" min="1" value="1" label="Minimum coverage" /> | |
| 17 </inputs> | |
| 18 | |
| 19 <outputs> | |
| 20 <data name="output" format="txt" metadata_source="input" /> | |
| 21 </outputs> | |
| 22 | |
| 23 <help> | |
| 24 </help> | |
| 25 </tool> |