Mercurial > repos > miller-lab > genome_diversity
comparison README @ 12:4b6590dd7250
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| author | miller-lab |
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| date | Wed, 12 Sep 2012 17:10:26 -0400 |
| parents | |
| children | 95a05c1ef5d5 |
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| 11:d4ec09e8079f | 12:4b6590dd7250 |
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| 1 Source code for the executables needed by these tools can be found in | |
| 2 the genome_diversity directory. | |
| 3 | |
| 4 Additionally, you'll need the following python modules: | |
| 5 matplotlib (we used version 1.1.0) http://pypi.python.org/packages/source/m/matplotlib/ | |
| 6 mechanize (we used version 0.2.5) http://pypi.python.org/packages/source/m/mechanize/ | |
| 7 networkx (we used version 1.6) http://pypi.python.org/packages/source/n/networkx/ | |
| 8 | |
| 9 And the following software: | |
| 10 ADMIXTURE (we used version 1.22) http://www.genetics.ucla.edu/software/admixture/ | |
| 11 EIGENSOFT (we used version 3.0) http://genepath.med.harvard.edu/~reich/Software.htm | |
| 12 PHAST (we used version 1.2.1) http://compgen.bscb.cornell.edu/phast/ | |
| 13 QuickTree (we used version 1.1) http://www.sanger.ac.uk/resources/software/quicktree/ |