Mercurial > repos > miller-lab > genome_diversity

comparison evaluate_population_numbers.bash @ 12:4b6590dd7250

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author miller-lab
date Wed, 12 Sep 2012 17:10:26 -0400
parents 2c498d40ecde
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11:d4ec09e8079f 12:4b6590dd7250
1 #!/usr/bin/env bash
2
3 if [ $# -ne 3 ]; then
4 echo "usage"
5 exit 1
6 fi
7
8 input_ped_file="$1"
9 output_file="$2"
10 max_populations="$3"
11
12 ADMIXTURE=admixture
13
14 for (( i=1; $i <= $max_populations; i++ )); do
15 $ADMIXTURE --cv "$input_ped_file" $i 2>&1 | grep CV >> "$output_file"
16 done
17