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comparison test-data/test_out/rank_pathways/rank_pathways.tabular @ 12:4b6590dd7250

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author miller-lab
date Wed, 12 Sep 2012 17:10:26 -0400
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11:d4ec09e8079f 12:4b6590dd7250
1 3 0.25 1 cfa03450=Non-homologous end-joining
2 1 0.25 1 cfa00750=Vitamin B6 metabolism
3 2 0.2 3 cfa00290=Valine, leucine and isoleucine biosynthesis
4 3 0.18 4 cfa00770=Pantothenate and CoA biosynthesis
5 5 0.17 5 cfa05310=Asthma
6 4 0.16 6 cfa00760=Nicotinate and nicotinamide metabolism
7 2 0.12 7 cfa00450=Selenocompound metabolism
8 4 0.11 8 cfa05330=Allograft rejection
9 5 0.098 9 cfa04672=Intestinal immune network for IgA production
10 4 0.098 9 cfa02010=ABC transporters
11 2 0.095 11 cfa03430=Mismatch repair
12 4 0.089 12 cfa05320=Autoimmune thyroid disease
13 4 0.089 12 cfa00280=Valine, leucine and isoleucine degradation
14 3 0.088 14 cfa03410=Base excision repair
15 3 0.088 14 cfa03030=DNA replication
16 3 0.088 14 cfa00565=Ether lipid metabolism
17 6 0.087 17 cfa05140=Leishmaniasis
18 2 0.087 17 cfa04977=Vitamin digestion and absorption
19 1 0.083 19 cfa00740=Riboflavin metabolism
20 4 0.08 20 cfa05150=Staphylococcus aureus infection
21 2 0.08 20 cfa03060=Protein export
22 3 0.079 22 cfa05340=Primary immunodeficiency
23 3 0.079 22 cfa05143=African trypanosomiasis
24 6 0.078 24 cfa00564=Glycerophospholipid metabolism
25 2 0.077 25 cfa00410=beta-Alanine metabolism
26 2 0.071 26 cfa05332=Graft-versus-host disease
27 5 0.069 27 cfa03320=PPAR signaling pathway
28 6 0.066 28 cfa05323=Rheumatoid arthritis
29 5 0.063 29 cfa04664=Fc epsilon RI signaling pathway
30 3 0.062 30 cfa00561=Glycerolipid metabolism
31 2 0.062 30 cfa00350=Tyrosine metabolism
32 2 0.062 30 cfa00020=Citrate cycle (TCA cycle)
33 2 0.059 33 cfa00260=Glycine, serine and threonine metabolism
34 1 0.059 33 cfa04614=Renin-angiotensin system
35 1 0.059 33 cfa00360=Phenylalanine metabolism
36 9 0.058 36 cfa04145=Phagosome
37 3 0.058 36 cfa05213=Endometrial cancer
38 4 0.057 38 cfa05416=Viral myocarditis
39 2 0.057 38 cfa00500=Starch and sucrose metabolism
40 2 0.056 40 cfa04130=SNARE interactions in vesicular transport
41 1 0.056 40 cfa00592=alpha-Linolenic acid metabolism
42 1 0.053 42 cfa04964=Proximal tubule bicarbonate reclamation
43 1 0.053 42 cfa00630=Glyoxylate and dicarboxylate metabolism
44 3 0.052 44 cfa04621=NOD-like receptor signaling pathway
45 2 0.05 45 cfa05219=Bladder cancer
46 2 0.05 45 cfa04940=Type I diabetes mellitus
47 2 0.05 45 cfa00380=Tryptophan metabolism
48 2 0.047 48 cfa03420=Nucleotide excision repair
49 3 0.045 49 cfa04920=Adipocytokine signaling pathway
50 3 0.045 49 cfa00970=Aminoacyl-tRNA biosynthesis
51 2 0.045 49 cfa00071=Fatty acid metabolism
52 1 0.045 49 cfa00591=Linoleic acid metabolism
53 1 0.045 49 cfa00340=Histidine metabolism
54 4 0.043 54 cfa04972=Pancreatic secretion
55 2 0.043 54 cfa03022=Basal transcription factors
56 2 0.043 54 cfa00982=Drug metabolism - cytochrome P450
57 3 0.042 57 cfa05218=Melanoma
58 3 0.042 57 cfa05211=Renal cell carcinoma
59 4 0.041 59 cfa05414=Dilated cardiomyopathy
60 2 0.04 60 cfa00590=Arachidonic acid metabolism
61 1 0.04 60 cfa04320=Dorso-ventral axis formation
62 3 0.039 62 cfa04662=B cell receptor signaling pathway
63 2 0.039 62 cfa00310=Lysine degradation
64 3 0.038 64 cfa04512=ECM-receptor interaction
65 2 0.038 64 cfa05144=Malaria
66 2 0.038 64 cfa00270=Cysteine and methionine metabolism
67 1 0.038 64 cfa03440=Homologous recombination
68 1 0.038 64 cfa00052=Galactose metabolism
69 8 0.037 69 cfa04810=Regulation of actin cytoskeleton
70 4 0.037 69 cfa05146=Amoebiasis
71 4 0.037 69 cfa04666=Fc gamma R-mediated phagocytosis
72 2 0.037 69 cfa05223=Non-small cell lung cancer
73 6 0.036 73 cfa05168=Herpes simplex infection
74 6 0.036 73 cfa05152=Tuberculosis
75 3 0.036 73 cfa04640=Hematopoietic cell lineage
76 7 0.034 76 cfa04510=Focal adhesion
77 3 0.034 76 cfa00240=Pyrimidine metabolism
78 3 0.033 78 cfa03008=Ribosome biogenesis in eukaryotes
79 1 0.033 78 cfa00983=Drug metabolism - other enzymes
80 2 0.032 80 cfa04976=Bile secretion
81 6 0.031 81 cfa04060=Cytokine-cytokine receptor interaction
82 4 0.031 81 cfa04110=Cell cycle
83 1 0.031 81 cfa00250=Alanine, aspartate and glutamate metabolism
84 4 0.029 84 cfa05145=Toxoplasmosis
85 3 0.029 84 cfa04650=Natural killer cell mediated cytotoxicity
86 2 0.029 84 cfa05214=Glioma
87 4 0.028 87 cfa05162=Measles
88 2 0.028 87 cfa05412=Arrhythmogenic right ventricular cardiomyopathy (ARVC)
89 7 0.027 89 cfa05166=HTLV-I infection
90 4 0.027 89 cfa05322=Systemic lupus erythematosus
91 2 0.027 89 cfa05212=Pancreatic cancer
92 2 0.026 92 cfa04146=Peroxisome
93 2 0.026 92 cfa04070=Phosphatidylinositol signaling system
94 1 0.026 92 cfa04978=Mineral absorption
95 2 0.025 95 cfa05133=Pertussis
96 2 0.025 95 cfa04612=Antigen processing and presentation
97 2 0.025 95 cfa04350=TGF-beta signaling pathway
98 1 0.025 95 cfa00830=Retinol metabolism
99 3 0.024 99 cfa04514=Cell adhesion molecules (CAMs)
100 2 0.024 99 cfa05410=Hypertrophic cardiomyopathy (HCM)
101 2 0.024 99 cfa04012=ErbB signaling pathway
102 1 0.024 99 cfa00980=Metabolism of xenobiotics by cytochrome P450
103 1 0.024 99 cfa00640=Propanoate metabolism
104 3 0.023 104 cfa04360=Axon guidance
105 2 0.023 104 cfa04620=Toll-like receptor signaling pathway
106 1 0.023 104 cfa04975=Fat digestion and absorption
107 1 0.023 104 cfa04330=Notch signaling pathway
108 7 0.022 108 cfa05200=Pathways in cancer
109 3 0.022 108 cfa04910=Insulin signaling pathway
110 2 0.022 108 cfa05215=Prostate cancer
111 1 0.022 108 cfa03460=Fanconi anemia pathway
112 24 0.021 112 cfa01100=Metabolic pathways
113 3 0.021 112 cfa04630=Jak-STAT signaling pathway
114 1 0.021 112 cfa00480=Glutathione metabolism
115 3 0.020 115 cfa00230=Purine metabolism
116 2 0.020 115 cfa04540=Gap junction
117 1 0.02 115 cfa00620=Pyruvate metabolism
118 2 0.019 118 cfa04912=GnRH signaling pathway
119 2 0.018 119 cfa05142=Chagas disease (American trypanosomiasis)
120 2 0.018 119 cfa04380=Osteoclast differentiation
121 1 0.018 119 cfa05221=Acute myeloid leukemia
122 1 0.018 119 cfa00330=Arginine and proline metabolism
123 3 0.017 123 cfa05164=Influenza A
124 2 0.017 123 cfa04270=Vascular smooth muscle contraction
125 2 0.017 123 cfa04114=Oocyte meiosis
126 3 0.016 126 cfa04141=Protein processing in endoplasmic reticulum
127 3 0.016 126 cfa04020=Calcium signaling pathway
128 2 0.016 126 cfa05160=Hepatitis C
129 2 0.016 126 cfa04670=Leukocyte transendothelial migration
130 1 0.016 126 cfa05210=Colorectal cancer
131 1 0.016 126 cfa04610=Complement and coagulation cascades
132 1 0.016 126 cfa04150=mTOR signaling pathway
133 4 0.015 133 cfa04010=MAPK signaling pathway
134 1 0.015 133 cfa04974=Protein digestion and absorption
135 1 0.015 133 cfa04730=Long-term depression
136 1 0.015 133 cfa04115=p53 signaling pathway
137 1 0.014 137 cfa05220=Chronic myeloid leukemia
138 1 0.014 137 cfa04971=Gastric acid secretion
139 1 0.014 137 cfa04720=Long-term potentiation
140 1 0.014 137 cfa04370=VEGF signaling pathway
141 1 0.014 137 cfa04260=Cardiac muscle contraction
142 1 0.014 137 cfa03018=RNA degradation
143 2 0.013 143 cfa00010=Glycolysis / Gluconeogenesis
144 1 0.013 143 cfa04970=Salivary secretion
145 1 0.013 143 cfa04520=Adherens junction
146 2 0.012 146 cfa04062=Chemokine signaling pathway
147 1 0.012 146 cfa05134=Legionellosis
148 1 0.012 146 cfa05132=Salmonella infection
149 1 0.012 146 cfa04727=GABAergic synapse
150 1 0.012 146 cfa04210=Apoptosis
151 1 0.011 151 cfa03015=mRNA surveillance pathway
152 1 0.010 152 cfa04914=Progesterone-mediated oocyte maturation
153 1 0.0098 153 cfa04916=Melanogenesis
154 2 0.0095 154 cfa04144=Endocytosis
155 1 0.0087 155 cfa04142=Lysosome
156 1 0.0086 156 cfa04660=T cell receptor signaling pathway
157 1 0.0082 157 cfa04724=Glutamatergic synapse
158 2 0.0081 158 cfa04080=Neuroactive ligand-receptor interaction
159 1 0.0079 159 cfa04728=Dopaminergic synapse
160 2 0.0074 160 cfa05010=Alzheimer's disease
161 1 0.0074 160 cfa04722=Neurotrophin signaling pathway
162 1 0.0074 160 cfa04120=Ubiquitin mediated proteolysis
163 1 0.0068 163 cfa00190=Oxidative phosphorylation
164 1 0.0067 164 cfa05012=Parkinson's disease
165 1 0.0057 165 cfa03013=RNA transport
166 1 0.0056 166 cfa03040=Spliceosome
167 1 0.0049 167 cfa05016=Huntington's disease
168 1 0.0023 168 cfa04740=Olfactory transduction
169 0 0 169 cfa05222=Small cell lung cancer
170 0 0 169 cfa05217=Basal cell carcinoma
171 0 0 169 cfa05216=Thyroid cancer
172 0 0 169 cfa05100=Bacterial invasion of epithelial cells
173 0 0 169 cfa05020=Prion diseases
174 0 0 169 cfa05014=Amyotrophic lateral sclerosis (ALS)
175 0 0 169 cfa04973=Carbohydrate digestion and absorption
176 0 0 169 cfa04966=Collecting duct acid secretion
177 0 0 169 cfa04962=Vasopressin-regulated water reabsorption
178 0 0 169 cfa04961=Endocrine and other factor-regulated calcium reabsorption
179 0 0 169 cfa04960=Aldosterone-regulated sodium reabsorption
180 0 0 169 cfa04950=Maturity onset diabetes of the young
181 0 0 169 cfa04930=Type II diabetes mellitus
182 0 0 169 cfa04744=Phototransduction
183 0 0 169 cfa04742=Taste transduction
184 0 0 169 cfa04725=Cholinergic synapse
185 0 0 169 cfa04721=Synaptic vesicle cycle
186 0 0 169 cfa04710=Circadian rhythm - mammal
187 0 0 169 cfa04623=Cytosolic DNA-sensing pathway
188 0 0 169 cfa04622=RIG-I-like receptor signaling pathway
189 0 0 169 cfa04530=Tight junction
190 0 0 169 cfa04340=Hedgehog signaling pathway
191 0 0 169 cfa04310=Wnt signaling pathway
192 0 0 169 cfa04140=Regulation of autophagy
193 0 0 169 cfa04122=Sulfur relay system
194 0 0 169 cfa03050=Proteasome
195 0 0 169 cfa03020=RNA polymerase
196 0 0 169 cfa03010=Ribosome
197 0 0 169 cfa01040=Biosynthesis of unsaturated fatty acids
198 0 0 169 cfa00920=Sulfur metabolism
199 0 0 169 cfa00910=Nitrogen metabolism
200 0 0 169 cfa00900=Terpenoid backbone biosynthesis
201 0 0 169 cfa00860=Porphyrin and chlorophyll metabolism
202 0 0 169 cfa00790=Folate biosynthesis
203 0 0 169 cfa00785=Lipoic acid metabolism
204 0 0 169 cfa00780=Biotin metabolism
205 0 0 169 cfa00730=Thiamine metabolism
206 0 0 169 cfa00670=One carbon pool by folate
207 0 0 169 cfa00650=Butanoate metabolism
208 0 0 169 cfa00604=Glycosphingolipid biosynthesis - ganglio series
209 0 0 169 cfa00603=Glycosphingolipid biosynthesis - globo series
210 0 0 169 cfa00601=Glycosphingolipid biosynthesis - lacto and neolacto series
211 0 0 169 cfa00600=Sphingolipid metabolism
212 0 0 169 cfa00563=Glycosylphosphatidylinositol(GPI)-anchor biosynthesis
213 0 0 169 cfa00562=Inositol phosphate metabolism
214 0 0 169 cfa00534=Glycosaminoglycan biosynthesis - heparan sulfate
215 0 0 169 cfa00533=Glycosaminoglycan biosynthesis - keratan sulfate
216 0 0 169 cfa00532=Glycosaminoglycan biosynthesis - chondroitin sulfate
217 0 0 169 cfa00531=Glycosaminoglycan degradation
218 0 0 169 cfa00520=Amino sugar and nucleotide sugar metabolism
219 0 0 169 cfa00514=Other types of O-glycan biosynthesis
220 0 0 169 cfa00512=Mucin type O-Glycan biosynthesis
221 0 0 169 cfa00511=Other glycan degradation
222 0 0 169 cfa00510=N-Glycan biosynthesis
223 0 0 169 cfa00472=D-Arginine and D-ornithine metabolism
224 0 0 169 cfa00471=D-Glutamine and D-glutamate metabolism
225 0 0 169 cfa00460=Cyanoamino acid metabolism
226 0 0 169 cfa00430=Taurine and hypotaurine metabolism
227 0 0 169 cfa00400=Phenylalanine, tyrosine and tryptophan biosynthesis
228 0 0 169 cfa00300=Lysine biosynthesis
229 0 0 169 cfa00232=Caffeine metabolism
230 0 0 169 cfa00140=Steroid hormone biosynthesis
231 0 0 169 cfa00130=Ubiquinone and other terpenoid-quinone biosynthesis
232 0 0 169 cfa00120=Primary bile acid biosynthesis
233 0 0 169 cfa00100=Steroid biosynthesis
234 0 0 169 cfa00072=Synthesis and degradation of ketone bodies
235 0 0 169 cfa00062=Fatty acid elongation in mitochondria
236 0 0 169 cfa00061=Fatty acid biosynthesis
237 0 0 169 cfa00053=Ascorbate and aldarate metabolism
238 0 0 169 cfa00051=Fructose and mannose metabolism
239 0 0 169 cfa00040=Pentose and glucuronate interconversions
240 0 0 169 cfa00030=Pentose phosphate pathway