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comparison dpmix.xml @ 4:7a94f11fe71f

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change output.extra_files_path to output.files_path
author Richard Burhans <burhans@bx.psu.edu>
date Tue, 10 Apr 2012 11:58:44 -0400
parents 2c498d40ecde
children e29f4d801bb0
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3:f810c756a5d6 4:7a94f11fe71f
1 <tool id="gd_dpmix" name="Admixture" version="1.0.0"> 1 <tool id="gd_dpmix" name="Admixture" version="1.0.0">
2 <description>using dynamic programming</description> 2 <description>using dynamic programming</description>
3 3
4 <command interpreter="python"> 4 <command interpreter="python">
5 dpmix.py "$input" "$data_source" "$switch_penalty" "$ap1_input" "$ap2_input" "$p_input" "$output" "$output2" "$output2.extra_files_path" "$input.dataset.metadata.dbkey" "$input.dataset.metadata.ref" "$GALAXY_DATA_INDEX_DIR" "gd.heterochromatic.loc" 5 dpmix.py "$input" "$data_source" "$switch_penalty" "$ap1_input" "$ap2_input" "$p_input" "$output" "$output2" "$output2.files_path" "$input.dataset.metadata.dbkey" "$input.dataset.metadata.ref" "$GALAXY_DATA_INDEX_DIR" "gd.heterochromatic.loc"
6 #for $individual, $individual_col in zip($input.dataset.metadata.individual_names, $input.dataset.metadata.individual_columns) 6 #for $individual, $individual_col in zip($input.dataset.metadata.individual_names, $input.dataset.metadata.individual_columns)
7 #set $arg = '%s:%s' % ($individual_col, $individual) 7 #set $arg = '%s:%s' % ($individual_col, $individual)
8 "$arg" 8 "$arg"
9 #end for 9 #end for
10 </command> 10 </command>