Mercurial > repos > miller-lab > genome_diversity

comparison find_intervals.xml @ 4:7a94f11fe71f

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change output.extra_files_path to output.files_path
author Richard Burhans <burhans@bx.psu.edu>
date Tue, 10 Apr 2012 11:58:44 -0400
parents 2c498d40ecde
children e29f4d801bb0
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3:f810c756a5d6 4:7a94f11fe71f
1 <tool id="gd_find_intervals" name="Find remarkable" version="1.0.0"> 1 <tool id="gd_find_intervals" name="Find remarkable" version="1.0.0">
2 <description>genomic intervals</description> 2 <description>genomic intervals</description>
3 3
4 <command interpreter="python"> 4 <command interpreter="python">
5 find_intervals.py "$input" "$input.metadata.dbkey" "$output" "$output.extra_files_path" 5 find_intervals.py "$input" "$input.metadata.dbkey" "$output" "$output.files_path"
6 6
7 #if $override_metadata.choice == "0" 7 #if $override_metadata.choice == "0"
8 "$input.metadata.ref" "$input.metadata.rPos" 8 "$input.metadata.ref" "$input.metadata.rPos"
9 #else 9 #else
10 "$override_metadata.ref_col" "$override_metadata.rpos_col" 10 "$override_metadata.ref_col" "$override_metadata.rpos_col"