Mercurial > repos > miller-lab > genome_diversity
comparison find_intervals.xml @ 4:7a94f11fe71f
change output.extra_files_path to output.files_path
author | Richard Burhans <burhans@bx.psu.edu> |
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date | Tue, 10 Apr 2012 11:58:44 -0400 |
parents | 2c498d40ecde |
children | e29f4d801bb0 |
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3:f810c756a5d6 | 4:7a94f11fe71f |
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1 <tool id="gd_find_intervals" name="Find remarkable" version="1.0.0"> | 1 <tool id="gd_find_intervals" name="Find remarkable" version="1.0.0"> |
2 <description>genomic intervals</description> | 2 <description>genomic intervals</description> |
3 | 3 |
4 <command interpreter="python"> | 4 <command interpreter="python"> |
5 find_intervals.py "$input" "$input.metadata.dbkey" "$output" "$output.extra_files_path" | 5 find_intervals.py "$input" "$input.metadata.dbkey" "$output" "$output.files_path" |
6 | 6 |
7 #if $override_metadata.choice == "0" | 7 #if $override_metadata.choice == "0" |
8 "$input.metadata.ref" "$input.metadata.rPos" | 8 "$input.metadata.ref" "$input.metadata.rPos" |
9 #else | 9 #else |
10 "$override_metadata.ref_col" "$override_metadata.rpos_col" | 10 "$override_metadata.ref_col" "$override_metadata.rpos_col" |