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comparison phylogenetic_tree.xml @ 4:7a94f11fe71f

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change output.extra_files_path to output.files_path
author Richard Burhans <burhans@bx.psu.edu>
date Tue, 10 Apr 2012 11:58:44 -0400
parents 2c498d40ecde
children e29f4d801bb0
comparison
equal deleted inserted replaced
3:f810c756a5d6 4:7a94f11fe71f
6 #if $individuals.choice == '0' 6 #if $individuals.choice == '0'
7 "all_individuals" 7 "all_individuals"
8 #else if $individuals.choice == '1' 8 #else if $individuals.choice == '1'
9 "$p1_input" 9 "$p1_input"
10 #end if 10 #end if
11 "$output" "$output.extra_files_path" "$minimum_coverage" "$minimum_quality" 11 "$output" "$output.files_path" "$minimum_coverage" "$minimum_quality"
12 #if ((str($input.metadata.scaffold) == str($input.metadata.ref)) and (str($input.metadata.pos) == str($input.metadata.rPos))) or (str($include_reference) == '0') 12 #if ((str($input.metadata.scaffold) == str($input.metadata.ref)) and (str($input.metadata.pos) == str($input.metadata.rPos))) or (str($include_reference) == '0')
13 "none" 13 "none"
14 #else 14 #else
15 "$input.metadata.dbkey" 15 "$input.metadata.dbkey"
16 #end if 16 #end if