Mercurial > repos > miller-lab > genome_diversity
comparison README @ 5:8a1147101f85
added 3rd party software
| author | Richard Burhans <burhans@bx.psu.edu> |
|---|---|
| date | Tue, 10 Apr 2012 12:49:47 -0400 |
| parents | 2c498d40ecde |
| children | 626b714f72bb |
comparison
equal
deleted
inserted
replaced
| 4:7a94f11fe71f | 5:8a1147101f85 |
|---|---|
| 1 Source code for the executables needed by these tools can be found in | 1 Source code for the executables needed by these tools can be found in |
| 2 the genome_diversity directory. | 2 the genome_diversity directory. |
| 3 | 3 |
| 4 Additionally, you'll need the following python modules: | 4 Additionally, you'll need the following python modules: |
| 5 matplotlib (we used version 1.1.0) http://pypi.python.org/packages/source/m/matplotlib/ | 5 matplotlib (we used version 1.1.0) http://pypi.python.org/packages/source/m/matplotlib/ |
| 6 mechanize (we used version 0.2.5) http://pypi.python.org/packages/source/m/mechanize/ | 6 mechanize (we used version 0.2.5) http://pypi.python.org/packages/source/m/mechanize/ |
| 7 networkx (we used version 1.6) http://pypi.python.org/packages/source/n/networkx/ | 7 networkx (we used version 1.6) http://pypi.python.org/packages/source/n/networkx/ |
| 8 | |
| 9 And the following software: | |
| 10 ADMIXTURE (we used version 1.22 ) http://www.genetics.ucla.edu/software/admixture/ | |
| 11 EIGENSOFT (we used version 3.0) http://genepath.med.harvard.edu/~reich/Software.htm | |
| 12 PHAST (we used version 1.2.1) http://compgen.bscb.cornell.edu/phast/ | |
| 13 QuickTree (we used version 1.1) http://www.sanger.ac.uk/resources/software/quicktree/ |