Mercurial > repos > miller-lab > genome_diversity
comparison aggregate_gd_indivs.xml @ 22:95a05c1ef5d5
update to devshed revision aaece207bd01
author | Richard Burhans <burhans@bx.psu.edu> |
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date | Mon, 11 Mar 2013 11:28:06 -0400 |
parents | f04f40a36cc8 |
children | 91e835060ad2 |
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21:d6b961721037 | 22:95a05c1ef5d5 |
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1 <tool id="gd_sum_gd_snp" name="Aggregate Individuals" version="1.0.0"> | 1 <tool id="gd_sum_gd_snp" name="Aggregate Individuals" version="1.0.0"> |
2 <description>: Append summary columns for a population</description> | 2 <description>: Append summary columns for a population</description> |
3 | 3 |
4 <command interpreter="python"> | 4 <command interpreter="python"> |
5 modify_snp_table.py "$input" "$p1_input" "$output" "-1" "-1" "-1" "-1" | 5 aggregate_gd_indivs.py "$input" "$p1_input" "$output" |
6 #for $individual, $individual_col in zip($input.dataset.metadata.individual_names, $input.dataset.metadata.individual_columns) | 6 #for $individual, $individual_col in zip($input.dataset.metadata.individual_names, $input.dataset.metadata.individual_columns) |
7 #set $arg = '%s:%s' % ($individual_col, $individual) | 7 #set $arg = '%s:%s' % ($individual_col, $individual) |
8 "$arg" | 8 "$arg" |
9 #end for | 9 #end for |
10 </command> | 10 </command> |