Mercurial > repos > miller-lab > genome_diversity

comparison average_fst.xml @ 10:9b92372de9f6

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rename snp to gsSnp, sap to gdSap
author Richard Burhans <burhans@bx.psu.edu>
date Tue, 04 Sep 2012 12:49:53 -0400
parents e29f4d801bb0
children
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9:22fe0154fa54 10:9b92372de9f6
13 "$arg" 13 "$arg"
14 #end for 14 #end for
15 </command> 15 </command>
16 16
17 <inputs> 17 <inputs>
18 <param name="input" type="data" format="snp" label="SNP table" /> 18 <param name="input" type="data" format="gdSnp" label="SNP table" />
19 <param name="p1_input" type="data" format="ind" label="Population 1 individuals" /> 19 <param name="p1_input" type="data" format="ind" label="Population 1 individuals" />
20 <param name="p2_input" type="data" format="ind" label="Population 2 individuals" /> 20 <param name="p2_input" type="data" format="ind" label="Population 2 individuals" />
21 21
22 <conditional name="data_source"> 22 <conditional name="data_source">
23 <param name="ds_choice" type="select" format="integer" label="Data source"> 23 <param name="ds_choice" type="select" format="integer" label="Data source">
59 <data name="output" format="txt" /> 59 <data name="output" format="txt" />
60 </outputs> 60 </outputs>
61 61
62 <tests> 62 <tests>
63 <test> 63 <test>
64 <param name="input" value="test_in/sample.snp" ftype="snp" /> 64 <param name="input" value="test_in/sample.gdSnp" ftype="gdSnp" />
65 <param name="p1_input" value="test_in/a.ind" ftype="ind" /> 65 <param name="p1_input" value="test_in/a.ind" ftype="ind" />
66 <param name="p2_input" value="test_in/b.ind" ftype="ind" /> 66 <param name="p2_input" value="test_in/b.ind" ftype="ind" />
67 <param name="ds_choice" value="0" /> 67 <param name="ds_choice" value="0" />
68 <param name="min_value" value="3" /> 68 <param name="min_value" value="3" />
69 <param name="discard_fixed" value="1" /> 69 <param name="discard_fixed" value="1" />