Mercurial > repos > miller-lab > genome_diversity

comparison README @ 31:a631c2f6d913

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Update to Miller Lab devshed revision 3c4110ffacc3
author Richard Burhans <burhans@bx.psu.edu>
date Fri, 20 Sep 2013 13:25:27 -0400
parents 95a05c1ef5d5
children f739a296a339
comparison
equal deleted inserted replaced
30:4188853b940b 31:a631c2f6d913
1 Source code for the executables needed by these tools can be found in 1 The Genome Diversity tools require the following software:
2 the genome_diversity directory.
3
4 Additionally, you'll need the following python modules:
5 matplotlib (we used version 1.1.0) http://pypi.python.org/packages/source/m/matplotlib/
6 mechanize (we used version 0.2.5) http://pypi.python.org/packages/source/m/mechanize/
7 networkx (we used version 1.6) http://pypi.python.org/packages/source/n/networkx/
8 fisher (we used version 0.1.4) http://pypi.python.org/packages/source/f/fisher/
9
10 And the following software:
11 ADMIXTURE (we used version 1.22) http://www.genetics.ucla.edu/software/admixture/ 2 ADMIXTURE (we used version 1.22) http://www.genetics.ucla.edu/software/admixture/
12 EIGENSOFT (we used version 3.0) http://genepath.med.harvard.edu/~reich/Software.htm 3 KING (we used version 1.5) http://people.virginia.edu/~wc9c/KING/
13 PHAST (we used version 1.2.1) http://compgen.bscb.cornell.edu/phast/
14 QuickTree (we used version 1.1) http://www.sanger.ac.uk/resources/software/quicktree/
15
16 Images used in the tools' documentation are located in the static/images
17 directory. Please copy these to the static/images directory in your
18 Galaxy installation.