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comparison pathway_image.xml @ 31:a631c2f6d913

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Update to Miller Lab devshed revision 3c4110ffacc3
author Richard Burhans <burhans@bx.psu.edu>
date Fri, 20 Sep 2013 13:25:27 -0400
parents 66a183c44dd5
children
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30:4188853b940b 31:a631c2f6d913
24 </inputs> 24 </inputs>
25 25
26 <outputs> 26 <outputs>
27 <data name="output" format="png" /> 27 <data name="output" format="png" />
28 </outputs> 28 </outputs>
29
30 <requirements>
31 <requirement type="package" version="0.2.5">mechanize</requirement>
32 </requirements>
29 33
30 <tests> 34 <tests>
31 <test> 35 <test>
32 <param name="input" value="test_in/sample.gd_sap" ftype="gd_sap" /> 36 <param name="input" value="test_in/sample.gd_sap" ftype="gd_sap" />
33 <param name="kpath" value="10" /> 37 <param name="kpath" value="10" />
75 403657 benign cfa04010=MAPK signaling pathway.cfa04012=ErbB signaling pathway.cfa04060=Cytokine-cytokine receptor interaction.cfa04144=Endocytosis.cfa04510=Focal adhesion.cfa04540=Gap junction.cfa04810=Regulation of actin cytoskeleton.cfa05160=Hepatitis C.cfa05200=Pathways in cancer.cfa05212=Pancreatic cancer.cfa05213=Endometrial cancer.cfa05214=Glioma.cfa05215=Prostate cancer.cfa05218=Melanoma.cfa05219=Bladder cancer.cfa05223=Non-small cell lung cancer 79 403657 benign cfa04010=MAPK signaling pathway.cfa04012=ErbB signaling pathway.cfa04060=Cytokine-cytokine receptor interaction.cfa04144=Endocytosis.cfa04510=Focal adhesion.cfa04540=Gap junction.cfa04810=Regulation of actin cytoskeleton.cfa05160=Hepatitis C.cfa05200=Pathways in cancer.cfa05212=Pancreatic cancer.cfa05213=Endometrial cancer.cfa05214=Glioma.cfa05215=Prostate cancer.cfa05218=Melanoma.cfa05219=Bladder cancer.cfa05223=Non-small cell lung cancer
76 etc. 80 etc.
77 81
78 output showing pathway cfa05214: 82 output showing pathway cfa05214:
79 83
80 .. image:: ${static_path}/images/gd_pathway_image.png 84 .. image:: $PATH_TO_IMAGES/gd_pathway_image.png
81 85
82 </help> 86 </help>
83 </tool> 87 </tool>