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Update to Miller Lab devshed revision 3c4110ffacc3
author Richard Burhans <burhans@bx.psu.edu>
date Fri, 20 Sep 2013 13:25:27 -0400
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30:4188853b940b 31:a631c2f6d913
1 <tool id="gd_raxml" name="RAxML" version="1.0.0">
2 <description>: construct a maximum-likelihood phylogenetic tree</description>
3
4 <command interpreter="python">
5 raxml.py '$input' '$output'
6 </command>
7
8 <inputs>
9 <param name="input" type="data" format="txt" label="PHYLIP dataset" />
10 </inputs>
11
12 <outputs>
13 <data name="output" format="nhx" />
14 </outputs>
15
16
17 <requirements>
18 <requirement type="package" version="7.7.6">raxml</requirement>
19 </requirements>
20
21 <help>
22 **What it does**
23
24 This tool runs RAxML on a phylip formatted file and returns a maximum
25 likelihood phylogram supported by a desired number of bootstraps.
26
27 This program takes as input a phylip formatted file and optionally a
28 number of parameters (for further information consult the manual_),
29 and returns a Newick formatted tree that can be explored with Phyloviz.
30
31 By default the program runs 1,000 fast bootstraps on the best likelihood
32 tree constructed with the GRT + gamma model.
33
34 .. _manual: http://sco.h-its.org/exelixis/oldPage/RAxML-Manual.7.0.4.pdf
35
36 </help>
37 </tool>