Mercurial > repos > miller-lab > genome_diversity

comparison pathway_image.xml @ 7:e29f4d801bb0

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change wsf -> snp; wpf -> sap
author Richard Burhans <burhans@bx.psu.edu>
date Wed, 18 Apr 2012 11:12:21 -0400
parents 2c498d40ecde
children 9b92372de9f6
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6:626b714f72bb 7:e29f4d801bb0
9 "--posKEGGclmn=${input.metadata.kegg_path}" 9 "--posKEGGclmn=${input.metadata.kegg_path}"
10 "--KEGGgeneposcolmn=${input.metadata.kegg_gene}" 10 "--KEGGgeneposcolmn=${input.metadata.kegg_gene}"
11 </command> 11 </command>
12 12
13 <inputs> 13 <inputs>
14 <param name="input" type="data" format="wpf" label="Table"> 14 <param name="input" type="data" format="sap" label="Table">
15 <validator type="metadata" check="kegg_gene,kegg_path" message="Missing KEGG gene code column and/or KEGG pathway code/name column metadata. Click the pencil icon in the history item to edit/save the metadata attributes" /> 15 <validator type="metadata" check="kegg_gene,kegg_path" message="Missing KEGG gene code column and/or KEGG pathway code/name column metadata. Click the pencil icon in the history item to edit/save the metadata attributes" />
16 </param> 16 </param>
17 <param name="pathway" type="select"> 17 <param name="pathway" type="select">
18 <options from_file="gd.pathways.txt"> 18 <options from_file="gd.pathways.txt">
19 <column name="value" index="1"/> 19 <column name="value" index="1"/>
27 <data name="output" format="png" /> 27 <data name="output" format="png" />
28 </outputs> 28 </outputs>
29 29
30 <tests> 30 <tests>
31 <test> 31 <test>
32 <param name="input" value="test_in/sample.wpf" ftype="wpf" /> 32 <param name="input" value="test_in/sample.sap" ftype="sap" />
33 <param name="pathway" value="cfa05214" /> 33 <param name="pathway" value="cfa05214" />
34 <output name="output" file="test_out/pathway_image/pathway_image.png" compare="sim_size" delta = "10000" /> 34 <output name="output" file="test_out/pathway_image/pathway_image.png" compare="sim_size" delta = "10000" />
35 </test> 35 </test>
36 </tests> 36 </tests>
37 37