--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_in/sample.gd_snp	Fri Sep 28 11:48:38 2012 -0400
@@ -0,0 +1,402 @@
+#{"column_names":["scaf","pos","A","B","qual","ref","rpos","rnuc","1A","1B","1G","1Q","2A","2B","2G","2Q","3A","3B","3G","3Q","4A","4B","4G","4Q","5A","5B","5G","5Q","6A","6B","6G","6Q","pair","dist",
+#"prim","rflp"],"dbkey":"canFam2","individuals":[["PB1",9],["PB2",13],["PB3",17],["PB4",21],["PB6",25],["PB8",29]],"pos":2,"rPos":7,"ref":6,"scaffold":1,"species":"bear"}
+Contig161_chr1_4641264_4641879	115	C	T	73.5	chr1	4641382	C	6	0	2	45	8	0	2	51	15	0	2	72	5	0	2	42	6	0	2	45	10	0	2	57	Y	54	0.323	0
+Contig48_chr1_10150253_10151311	11	A	G	94.3	chr1	10150264	A	1	0	2	30	1	0	2	30	1	0	2	30	3	0	2	36	1	0	2	30	1	0	2	30	Y	22	+99.	0
+Contig20_chr1_21313469_21313570	66	C	T	54.0	chr1	21313534	C	4	0	2	39	4	0	2	39	5	0	2	42	4	0	2	39	4	0	2	39	5	0	2	42	N	1	+99.	0
+Contig86_chr1_30984450_30985684	670	C	T	365.0	chr1	30985133	C	9	0	2	54	10	0	2	57	13	0	2	66	3	0	2	36	9	0	2	54	7	0	2	48	Y	145	0.031	0
+Contig5_chr1_32562160_32563940	1215	G	T	163.0	chr1	32563356	G	17	0	2	78	19	0	2	84	20	0	2	87	14	0	2	69	12	0	2	63	10	0	2	57	Y	17	0.251	0
+Contig110_chr1_33385093_33386888	510	C	T	270.0	chr1	33385587	A	14	0	2	69	11	0	2	60	19	0	2	84	11	0	2	60	10	0	2	57	13	0	2	66	Y	13	0.126	0
+Contig100_chr1_33562920_33564288	743	C	T	178.0	chr1	33563655	C	6	0	2	45	10	0	2	57	8	0	2	51	5	0	2	42	13	0	2	66	7	0	2	48	Y	13	0.090	3
+Contig7_chr1_37302355_37302489	97	A	G	59.2	chr1	37302452	G	3	0	2	36	8	0	2	51	5	0	2	42	8	0	2	51	7	0	2	48	6	0	2	45	N	56	2.812	0
+Contig62_chr1_41880715_41882180	1078	T	G	57.6	chr1	41881785	T	14	0	2	69	15	0	2	72	16	0	2	75	13	0	2	66	8	0	2	51	10	0	2	57	Y	21	0.477	0
+Contig47_chr1_48409178_48409384	37	C	T	134.0	chr1	48409215	T	5	0	2	42	6	0	2	45	8	0	2	51	9	0	2	54	4	0	2	39	6	0	2	45	N	66	+99.	0
+Contig119_chr1_49647683_49650077	1618	C	A	99.7	chr1	49649276	A	8	0	2	51	11	0	2	60	10	0	2	57	9	0	2	54	10	0	2	57	14	0	2	69	Y	16	0.166	0
+Contig21_chr1_60697952_60699446	307	G	A	51.9	chr1	60698265	G	12	0	2	63	9	0	2	54	4	0	2	39	6	0	2	45	9	0	2	54	4	0	2	39	Y	98	0.507	0
+Contig131_chr1_62319542_62320564	169	C	G	103.0	chr1	62319709	C	12	0	2	63	12	0	2	66	14	0	2	69	12	0	2	63	9	0	2	54	9	0	2	54	Y	73	0.307	1
+Contig14_chr1_63450425_63450680	101	T	A	102.0	chr1	63450530	T	8	0	2	51	10	0	2	57	18	0	2	81	8	0	2	51	8	0	2	34	8	0	2	51	N	99	1.085	0
+Contig83_chr1_63869778_63869942	40	T	C	23.7	chr1	63869819	C	5	0	2	42	7	0	2	48	2	0	2	33	4	0	2	39	6	0	2	48	4	0	2	39	N	654	1.364	0
+Contig30_chr1_64702572_64703138	178	A	T	117.0	chr1	64702750	T	10	0	2	57	10	0	2	57	20	0	2	87	21	0	2	90	6	0	2	45	12	0	2	63	Y	50	3.872	0
+Contig101_chr1_69868406_69868872	287	G	A	14.6	chr1	69868689	G	13	0	2	66	17	0	2	78	10	0	2	57	8	0	2	51	7	0	2	48	8	0	2	51	N	137	0.305	0
+Contig35_chr1_74482577_74482791	170	G	A	45.4	chr1	74482751	A	3	0	2	36	4	0	2	39	13	0	2	66	2	0	2	33	5	0	2	42	2	0	2	33	N	20	+99.	3
+Contig49_chr1_83865731_83865944	85	G	A	34.1	chr1	-1	N	4	0	2	39	4	0	2	39	8	0	2	51	2	0	2	33	5	0	2	42	4	0	2	39	N	-1	1.485	0
+Contig64_chr1_87343284_87345672	163	T	A	3.76	chr1	87343443	C	0	2	2	1	0	0	-1	0	5	0	2	42	2	0	2	33	0	1	2	14	0	0	-1	0	N	3	0.039	2
+Contig20_chr1_110679280_110679687	181	C	T	87.4	chr1	110679454	-	1	0	2	30	7	0	2	48	4	0	2	39	2	0	2	33	2	0	2	33	0	0	-1	0	N	31	0.660	2
+Contig129_chr1_117547123_117548666	926	G	A	126.0	chr1	117548059	G	19	0	2	84	9	0	2	54	11	0	2	60	10	0	2	57	12	0	2	63	11	0	2	60	Y	64	0.049	0
+Contig7_chr1_125154638_125154844	190	G	T	130.0	chr1	125154818	A	5	0	2	42	4	0	2	39	7	0	2	48	2	0	2	33	7	0	2	48	4	0	2	39	N	33	+99.	0
+Contig222_chr2_9817738_9818143	220	C	T	888.0	chr2	9817960	C	17	0	2	78	12	0	2	63	20	0	2	87	8	0	2	51	11	0	2	60	12	0	2	63	Y	76	0.093	1
+Contig47_chr2_25470778_25471576	126	G	A	888.0	chr2	25470896	G	12	0	2	63	14	0	2	69	14	0	2	69	10	0	2	57	18	0	2	81	13	0	2	66	N	11	0.289	1
+Contig10_chr2_40859744_40860534	637	G	A	888.0	chr2	40860397	A	3	0	2	36	3	0	2	36	2	0	2	33	7	0	2	48	6	0	2	45	8	0	2	51	Y	42	1.435	0
+Contig52_chr2_41421981_41422725	604	C	A	888.0	chr2	41422583	A	17	0	2	78	18	0	2	81	14	0	2	69	17	0	2	78	12	0	2	63	14	0	2	69	Y	44	0.882	0
+Contig94_chr2_43869105_43870358	220	G	A	888.0	chr2	43869333	G	12	0	2	63	18	0	2	81	11	0	2	60	15	0	2	72	12	0	2	63	13	0	2	66	Y	1	0.156	0
+Contig34_chr2_48444129_48444939	695	C	T	134.0	chr2	48444828	C	14	0	2	69	8	0	2	51	16	0	2	75	17	0	2	78	9	0	2	54	15	0	2	72	Y	161	0.375	0
+Contig6_chr2_56859179_56859956	671	T	C	999.9	chr2	56859851	T	15	0	2	72	18	0	2	81	20	0	2	90	19	0	2	84	19	0	2	84	24	0	2	99	N	28	5.308	1
+Contig115_chr2_61631913_61632510	310	G	T	999.3	chr2	61632216	G	7	0	2	48	9	0	2	54	7	0	2	48	11	0	2	60	10	0	2	57	10	0	2	57	N	13	0.184	0
+Contig31_chr2_67331584_67331785	39	C	T	999.0	chr2	67331623	C	11	0	2	60	10	0	2	57	7	0	2	48	9	0	2	54	2	0	2	33	4	0	2	39	N	110	0.647	1
+Contig92_chr2_75906683_75907774	773	T	C	85.4	chr2	75907438	C	12	0	2	63	12	0	2	63	17	0	2	78	8	0	2	51	8	0	2	51	13	0	2	66	Y	93	0.166	0
+Contig163_chr2_76402959_76404830	221	C	T	127.0	chr2	76403181	C	4	0	2	42	10	0	2	57	9	0	2	54	11	0	2	60	7	0	2	48	9	0	2	54	Y	54	0.178	1
+Contig177_chr2_79559305_79560033	168	C	T	5.67	chr2	79559476	A	2	0	2	33	3	0	2	36	1	0	2	30	2	0	2	33	0	0	-1	0	1	0	2	30	N	56	0.257	0
+Contig8_chr2_82945728_82945839	61	T	C	223.0	chr2	-1	N	2	0	2	33	4	0	2	39	9	0	2	54	3	0	2	36	5	0	2	42	0	0	-1	0	N	-1	+99.	1
+Contig59_chr2_85243022_85243758	506	G	A	96.3	chr2	85243509	T	9	0	2	54	11	0	2	60	12	0	2	63	14	0	2	69	10	0	2	57	7	0	2	48	Y	6	0.459	0
+Contig56_chr3_17326225_17327548	387	G	C	91.2	chr3	17326591	G	14	0	2	69	13	0	2	66	15	0	2	72	15	0	2	72	13	0	2	66	12	0	2	63	Y	20	0.225	3
+Contig108_chr3_46210055_46210874	367	A	G	21.0	chr3	46210423	A	19	0	2	84	10	0	2	57	16	0	2	75	14	0	2	69	20	0	2	87	11	0	2	60	N	236	0.028	1
+Contig16_chr3_47113407_47114449	322	G	A	105.0	chr3	47113713	G	13	0	2	66	17	0	2	78	15	0	2	72	6	0	2	45	11	0	2	60	11	0	2	60	Y	114	0.132	5
+Contig3_chr3_47564810_47565251	262	T	G	112.0	chr3	47565104	T	14	0	2	69	16	0	2	75	20	0	2	87	10	0	2	57	9	0	2	54	8	0	2	51	Y	24	0.073	1
+Contig35_chr3_49662401_49662929	270	A	T	96.1	chr3	49662652	A	14	0	2	69	11	0	2	60	23	0	2	96	13	0	2	66	12	0	2	63	11	0	2	60	Y	36	3.583	2
+Contig97_chr3_49820354_49821631	1069	G	A	44.1	chr3	49821402	G	9	0	2	54	9	0	2	54	6	0	2	45	10	0	2	57	5	0	2	42	8	0	2	51	N	6	0.201	2
+Contig1_chr3_51588422_51589409	926	A	G	51.0	chr3	51589353	G	2	0	2	33	2	0	2	33	6	0	2	45	4	0	2	39	9	0	2	54	11	0	2	60	N	21	1.147	0
+Contig25_chr3_53260697_53262560	402	G	A	211.0	chr3	53261095	G	17	0	2	78	14	0	2	69	15	0	2	75	12	0	2	63	14	0	2	69	12	0	2	63	Y	116	1.033	0
+Contig11_chr3_53992739_53995954	2392	G	A	82.4	chr3	53995143	A	12	0	2	66	11	0	2	60	14	0	2	69	6	0	2	45	11	0	2	60	17	0	2	78	Y	358	0.321	1
+Contig236_chr3_72676275_72676473	128	G	A	278.0	chr3	72676410	G	12	0	2	63	11	0	2	60	13	0	2	66	10	0	2	57	11	0	2	60	8	0	2	51	N	36	0.496	1
+Contig48_chr3_74792236_74792388	63	T	C	111.0	chr3	74792289	-	17	0	2	78	9	0	2	54	9	0	2	54	5	0	2	42	11	0	2	60	9	0	2	54	N	-1	3.528	0
+Contig65_chr3_80727952_80728283	39	T	C	71.2	chr3	80727990	T	7	0	2	48	3	0	2	36	8	0	2	51	6	0	2	45	8	0	2	51	11	0	2	60	N	22	7.078	0
+Contig53_chr3_86407941_86409349	1406	G	A	86.9	chr3	86409317	A	5	0	2	42	5	0	2	42	4	0	2	39	10	0	2	57	8	0	2	51	12	0	2	63	N	14	3.285	1
+Contig13_chr3_92409738_92412300	718	A	G	23.3	chr3	92410450	A	12	0	2	63	16	0	2	75	18	0	2	81	13	0	2	66	22	0	2	93	7	0	2	48	Y	23	0.224	2
+Contig134_chr4_12145648_12148225	1326	C	T	164.0	chr4	12146961	C	9	0	2	54	8	0	2	51	7	0	2	48	3	0	2	36	5	0	2	42	5	0	2	42	Y	4	0.080	1
+Contig88_chr4_15557471_15557833	268	A	G	145.0	chr4	15557737	A	6	0	2	45	6	0	2	45	11	0	2	60	9	0	2	54	5	0	2	42	6	0	2	45	Y	46	4.138	0
+Contig53_chr4_18823968_18824478	149	A	G	91.3	chr4	18824115	A	18	0	2	81	15	0	2	72	21	0	2	90	13	0	2	66	9	0	2	54	12	0	2	63	N	51	0.251	0
+Contig86_chr4_24953866_24956222	1985	C	T	76.4	chr4	24955841	T	8	0	2	51	1	0	2	30	3	0	2	36	7	0	2	48	2	0	2	33	6	0	2	45	Y	12	0.357	0
+Contig19_chr4_26233601_26233991	146	G	C	51.6	chr4	26233744	G	10	0	2	57	8	0	2	51	9	0	2	54	5	0	2	42	9	0	2	54	4	0	2	39	N	41	0.163	3
+Contig78_chr4_28579975_28580134	30	T	G	19.6	chr4	28579994	-	4	0	2	39	3	0	2	36	5	0	2	42	4	0	2	39	2	0	2	33	2	0	2	33	N	33	0.499	0
+Contig16_chr4_30177226_30179725	621	C	T	88.4	chr4	30177859	C	20	0	2	87	13	0	2	66	13	0	2	66	11	0	2	60	8	0	2	51	8	0	2	51	Y	45	0.797	1
+Contig30_chr4_46196500_46197672	1045	A	C	33.4	chr4	46197522	C	16	0	2	75	9	0	2	54	4	0	2	39	7	0	2	48	14	0	2	69	6	0	2	45	Y	43	0.306	0
+Contig2_chr4_47039007_47039323	158	G	C	35.1	chr4	47039160	-	8	0	2	51	9	0	2	54	13	0	2	66	8	0	2	51	10	0	2	60	9	0	2	54	N	0	0.131	0
+Contig17_chr4_61310346_61311158	267	C	T	49.9	chr4	61310604	T	10	0	2	57	7	0	2	48	9	0	2	54	10	0	2	57	14	0	2	69	7	0	2	48	Y	219	0.098	0
+Contig26_chr4_64190783_64191295	64	A	G	162.0	chr4	64190843	A	10	0	2	57	6	0	2	45	20	0	2	87	12	0	2	63	17	0	2	78	7	0	2	48	Y	306	7.428	0
+Contig11_chr4_65500960_65501654	634	T	C	107.0	chr4	65501585	T	13	0	2	66	14	0	2	69	13	0	2	66	13	0	2	66	6	0	2	45	18	0	2	81	Y	10	6.849	0
+Contig38_chr4_67768488_67768982	113	A	G	102.0	chr4	67768598	A	9	0	2	54	8	0	2	51	9	0	2	54	11	0	2	60	10	0	2	57	7	0	2	48	Y	188	3.175	0
+Contig30_chr4_70978564_70979580	596	A	G	164.0	chr4	70979151	A	15	0	2	72	12	0	2	63	20	0	2	87	14	0	2	69	15	0	2	72	15	0	2	72	Y	111	2.458	2
+Contig72_chr4_74225793_74226492	674	A	G	110.0	chr4	74226472	A	5	0	2	42	3	0	2	36	2	0	2	33	3	0	2	36	7	0	2	48	4	0	2	39	Y	115	+99.	1
+Contig32_chr4_75618955_75620254	301	T	C	333.0	chr4	75619257	C	10	0	2	57	8	0	2	51	12	0	2	63	20	0	2	87	12	0	2	63	14	0	2	69	Y	34	0.163	2
+Contig31_chr5_4734956_4736547	1166	C	T	133.0	chr5	4736132	C	14	0	2	69	8	0	2	51	17	0	2	78	4	0	2	39	9	0	2	54	12	0	2	63	Y	1	0.021	0
+Contig113_chr5_11052263_11052603	28	C	T	38.2	chr5	11052280	C	1	2	1	12	3	2	1	10	5	0	2	42	2	1	2	13	3	0	2	36	8	0	2	51	Y	161	+99.	0
+Contig30_chr5_15698241_15699076	396	G	T	76.6	chr5	15698633	T	8	0	2	51	9	0	2	54	10	0	2	57	7	0	2	48	11	0	2	60	8	0	2	54	Y	65	0.009	0
+Contig36_chr5_17709244_17710004	373	T	C	281.0	chr5	17709624	T	6	0	2	45	9	0	2	54	7	0	2	48	4	0	2	39	10	0	2	57	4	0	2	39	Y	16	0.131	0
+Contig13_chr5_21881138_21881562	227	A	G	251.0	chr5	21881356	A	11	0	2	60	20	0	2	87	22	0	2	93	10	0	2	57	10	0	2	57	21	0	2	90	Y	182	2.013	0
+Contig5_chr5_23188121_23190168	1841	C	T	141.0	chr5	23189975	C	20	0	2	87	19	0	2	84	22	0	2	93	16	0	2	75	18	0	2	81	14	0	2	69	N	45	0.355	0
+Contig6_chr5_26899813_26900498	97	A	C	88.6	chr5	26899910	A	15	0	2	72	14	0	2	69	27	0	2	108	15	0	2	72	13	0	2	69	12	0	2	63	Y	92	7.370	3
+Contig314_chr5_34019166_34019319	72	C	A	20.1	chr5	-1	N	6	0	2	45	9	0	2	54	4	0	2	39	4	0	2	39	9	0	2	54	5	0	2	42	N	-1	+99.	4
+Contig147_chr5_38980258_38980559	221	C	T	40.8	chr5	38980477	C	15	0	2	72	15	0	2	72	19	0	2	84	10	0	2	57	12	0	2	63	20	0	2	87	Y	11	4.576	0
+Contig115_chr5_48119079_48120169	151	C	T	78.3	chr5	48119234	C	17	0	2	78	10	0	2	57	14	0	2	69	16	0	2	75	8	0	2	51	12	0	2	63	Y	205	0.320	0
+Contig45_chr5_50892738_50892968	169	C	A	25.8	chr5	50892911	C	10	0	2	57	7	0	2	48	10	0	2	60	6	0	2	45	6	0	2	45	13	0	2	66	N	244	0.497	1
+Contig40_chr5_51484164_51484696	14	A	G	53.3	chr5	51484180	A	6	0	2	45	4	0	2	39	4	0	2	39	3	0	2	36	0	0	2	13	3	0	2	36	N	63	+99.	1
+Contig40_chr5_51664286_51667573	861	C	T	148.0	chr5	51665149	C	20	0	2	87	21	0	2	90	20	0	2	87	11	0	2	60	16	0	2	75	15	0	2	72	Y	207	0.080	1
+Contig15_chr5_51889708_51891244	882	A	G	149.0	chr5	51890581	G	13	0	2	66	18	0	2	81	17	0	2	78	22	0	2	93	15	0	2	72	22	0	2	93	Y	7	0.025	1
+Contig143_chr5_57231364_57232010	294	T	C	78.5	chr5	57231644	T	3	0	2	36	5	0	2	42	4	0	2	39	2	0	2	33	10	0	2	57	6	0	2	45	Y	73	0.337	2
+Contig13_chr5_57609985_57610584	496	C	T	50.5	chr5	57610476	C	17	0	2	78	9	0	2	54	6	0	2	45	8	0	2	51	10	0	2	57	12	0	2	63	N	77	2.022	1
+Contig230_chr5_58486998_58487280	227	T	C	192.0	chr5	58487232	T	3	0	2	36	4	0	2	39	9	0	2	54	6	0	2	45	4	0	2	39	7	0	2	48	N	24	0.100	2
+Contig385_chr5_60122961_60123128	15	C	G	136.0	chr5	60122976	C	0	0	-1	0	0	0	-1	0	1	0	2	30	1	0	2	30	3	0	2	36	0	0	-1	0	N	100	+99.	2
+Contig143_chr5_65121393_65122035	558	C	A	127.0	chr5	65121959	A	0	0	-1	0	5	0	2	42	3	0	2	36	4	0	2	39	0	0	-1	0	4	0	2	39	Y	285	0.391	1
+Contig32_chr5_70852360_70853289	282	G	A	114.0	chr5	70852623	G	16	0	2	75	11	0	2	60	13	0	2	66	12	0	2	63	13	0	2	66	7	0	2	48	Y	33	0.276	0
+Contig215_chr5_70946445_70947428	363	T	G	28.2	chr5	70946809	C	4	0	2	39	0	5	0	12	9	0	2	54	6	0	2	45	3	3	2	1	9	0	2	54	N	43	0.153	0
+Contig100_chr5_71189678_71190590	813	C	T	30.8	chr5	71190523	C	11	0	2	60	11	0	2	60	9	0	2	54	10	0	2	57	6	0	2	45	13	0	2	66	Y	8	0.362	1
+Contig45_chr5_76133561_76134403	388	A	G	103.0	chr5	76133941	G	3	0	2	36	8	0	2	51	8	0	2	51	5	0	2	42	6	0	2	45	7	0	2	48	Y	57	0.038	0
+Contig61_chr5_90202541_90204393	909	C	T	101.0	chr5	90203461	T	7	0	2	48	5	0	2	42	14	0	2	69	3	0	2	36	5	0	2	42	8	0	2	51	Y	64	1.448	0
+Contig111_chr6_5821219_5822519	1060	A	G	68.1	chr6	5822321	T	7	0	2	48	6	0	2	45	11	0	2	60	9	0	2	54	3	0	2	36	12	0	2	63	Y	7	0.231	1
+Contig220_chr6_10671338_10672441	999	T	C	36.3	chr6	10672322	T	5	0	2	42	11	0	2	60	11	0	2	60	8	0	2	51	5	0	2	42	9	0	2	54	Y	1	1.667	0
+Contig226_chr6_17361986_17362884	418	G	C	251.0	chr6	17362406	G	6	0	2	45	8	0	2	51	7	0	2	48	9	0	2	54	7	0	2	48	7	0	2	48	Y	7	0.147	0
+Contig380_chr6_18173971_18174169	180	C	T	4.87	chr6	18174144	T	0	0	-1	0	4	0	2	39	7	0	2	48	2	0	2	33	2	0	2	33	1	0	2	30	N	56	2.589	0
+Contig51_chr6_20231207_20231785	161	A	G	70.5	chr6	20231375	G	13	0	2	66	5	0	2	42	8	0	2	51	2	0	2	36	5	0	2	42	5	0	2	42	Y	153	1.754	0
+Contig102_chr6_30271329_30271577	39	T	G	139.0	chr6	30271371	G	3	0	2	36	4	0	2	39	6	0	2	45	1	0	2	30	4	0	2	39	4	0	2	39	N	15	1.159	0
+Contig217_chr6_31393824_31394218	97	G	A	115.0	chr6	31393921	G	9	0	2	54	19	0	2	84	15	0	2	72	12	0	2	63	7	0	2	48	10	0	2	57	N	45	0.477	0
+Contig186_chr6_31928098_31928245	73	G	A	117.0	chr6	-1	N	5	0	2	42	8	0	2	51	2	0	2	33	4	0	2	39	1	0	2	30	5	0	2	42	N	-1	0.276	1
+Contig52_chr6_33188498_33188724	123	G	A	59.0	chr6	-1	N	5	0	2	42	13	0	2	66	8	0	2	51	4	0	2	39	9	0	2	54	9	0	2	54	N	-1	0.880	1
+Contig102_chr6_38743009_38743435	290	A	G	178.0	chr6	38743311	A	11	0	2	60	13	0	2	66	9	0	2	54	11	0	2	60	12	0	2	63	13	0	2	66	Y	34	0.148	4
+Contig81_chr6_49018353_49019532	179	C	A	72.5	chr6	49018530	A	15	0	2	72	13	0	2	66	19	0	2	72	8	0	2	51	12	0	2	63	16	0	2	75	Y	15	0.145	1
+Contig112_chr6_51024554_51024851	100	A	G	121.0	chr6	51024654	A	10	0	2	57	12	0	2	63	9	0	2	54	13	0	2	66	14	0	2	69	17	0	2	78	N	75	4.287	0
+Contig40_chr6_51412751_51413807	227	T	C	94.5	chr6	51412975	C	5	0	2	42	8	0	2	51	7	0	2	48	9	0	2	54	11	0	2	60	10	0	2	57	Y	4	5.661	0
+Contig47_chr6_69073222_69074767	1315	T	C	212.0	chr6	69074558	T	20	0	2	87	17	0	2	78	18	0	2	81	12	0	2	63	17	0	2	78	7	0	2	48	Y	9	0.652	0
+Contig30_chr6_74848932_74849059	57	C	G	46.3	chr6	74848993	C	7	0	2	48	7	0	2	33	6	0	2	45	7	0	2	48	5	0	2	42	6	0	2	45	N	-1	+99.	1
+Contig84_chr7_6648683_6650255	1297	G	A	110.0	chr7	6649988	G	18	0	2	81	9	0	2	54	22	0	2	77	16	0	2	75	20	0	2	87	6	0	2	45	Y	83	0.166	0
+Contig239_chr7_13007379_13007700	275	A	G	39.8	chr7	13007642	A	8	0	2	51	5	0	2	42	8	0	2	51	3	0	2	36	3	0	2	36	5	0	2	42	N	46	1.511	3
+Contig119_chr7_18310707_18310948	23	A	T	133.0	chr7	18310729	A	6	0	2	45	5	0	2	42	10	0	2	57	5	0	2	42	2	0	2	33	2	0	2	33	N	4553	+99.	0
+Contig93_chr7_18513377_18513741	173	T	C	130.0	chr7	18513533	C	15	0	2	72	11	0	2	60	18	0	2	81	6	0	2	45	10	0	2	57	14	0	2	69	Y	115	0.174	0
+Contig133_chr7_19603333_19603776	414	C	G	31.9	chr7	19603734	G	10	0	2	57	4	0	2	39	4	0	2	39	5	0	2	42	9	0	2	54	9	0	2	54	N	78	+99.	5
+Contig132_chr7_20426224_20428145	1815	A	G	28.3	chr7	20428041	A	11	1	2	43	12	0	2	63	19	0	2	84	23	0	2	96	14	0	2	69	10	0	2	57	N	11	0.264	0
+Contig206_chr7_26281823_26282074	103	C	A	101.0	chr7	26281925	T	11	0	2	60	16	0	2	61	19	0	2	84	6	0	2	45	19	0	2	84	16	0	2	75	N	-1	0.947	1
+Contig116_chr7_45858984_45859111	38	T	C	73.2	chr7	-1	N	2	0	2	33	1	0	2	30	3	0	2	36	2	0	2	33	2	0	2	33	1	0	2	30	N	-1	3.442	0
+Contig38_chr7_50681997_50682600	42	T	C	92.4	chr7	50682037	G	6	0	2	45	2	0	2	33	10	0	2	57	12	0	2	63	5	0	2	42	6	0	2	45	Y	94	0.146	0
+Contig55_chr7_53147505_53148974	894	A	G	68.4	chr7	53148397	G	22	0	2	93	13	0	2	66	16	0	2	75	8	0	2	51	16	0	2	75	11	0	2	60	Y	19	0.060	0
+Contig4_chr7_53685534_53688206	1709	C	G	76.2	chr7	53687225	C	18	0	2	81	17	0	2	78	18	0	2	81	15	0	2	72	14	0	2	69	14	0	2	69	Y	32	0.659	1
+Contig61_chr7_55832923_55834065	506	T	C	185.0	chr7	55833450	C	9	0	2	54	10	0	2	57	22	0	2	93	12	0	2	63	12	0	2	63	7	0	2	48	Y	1	0.019	0
+Contig91_chr8_12804505_12805470	409	C	A	111.0	chr8	12804906	C	8	0	2	51	10	0	2	57	15	0	2	72	12	0	2	63	14	0	2	69	15	0	2	72	N	145	0.175	0
+Contig30_chr8_17147743_17147923	13	G	A	105.0	chr8	17147756	A	1	3	1	19	1	0	2	30	3	0	2	36	1	0	2	30	1	0	2	30	3	0	2	36	N	6	+99.	0
+Contig8_chr8_27811135_27812620	333	C	T	37.9	chr8	27811458	C	4	0	2	39	11	0	2	60	18	0	2	81	5	0	2	42	6	0	2	45	5	0	2	42	Y	1	0.272	0
+Contig66_chr8_28273102_28273660	175	G	C	81.6	chr8	28273263	T	9	0	2	54	17	0	2	78	19	0	2	84	8	0	2	51	16	0	2	75	19	0	2	84	Y	3	2.735	0
+Contig84_chr8_31375511_31376456	443	T	C	125.0	chr8	31375954	T	10	0	2	57	15	0	2	72	27	0	2	108	18	0	2	81	16	0	2	75	9	0	2	54	Y	2	0.650	0
+Contig18_chr8_32575859_32577431	264	T	C	151.0	chr8	32576124	T	20	0	2	87	14	0	2	69	17	0	2	78	14	0	2	69	13	0	2	66	14	0	2	69	Y	17	0.915	1
+Contig54_chr8_40913908_40916451	1275	G	A	175.0	chr8	40915190	G	10	0	2	57	8	0	2	51	11	0	2	60	7	0	2	48	8	0	2	51	9	0	2	54	Y	21	0.056	3
+Contig93_chr8_44658786_44659075	180	T	G	55.3	chr8	44658964	T	4	0	2	39	3	0	2	36	6	0	2	45	5	0	2	45	5	0	2	42	4	0	2	39	N	14	0.188	0
+Contig17_chr8_57490059_57490498	69	G	T	97.4	chr8	57490127	A	2	0	2	33	11	0	2	60	15	0	2	72	16	0	2	75	8	0	2	51	10	0	2	57	N	40	0.522	5
+Contig66_chr8_58562376_58563446	345	C	G	5.74	chr8	58562721	C	14	0	2	69	12	0	2	63	9	0	2	57	10	0	2	57	9	0	2	54	10	0	2	57	Y	6	0.685	0
+Contig44_chr8_71186368_71188207	1455	G	T	147.0	chr8	71187818	G	4	10	1	74	3	0	2	36	20	0	2	87	12	0	2	63	8	0	2	51	10	0	2	57	Y	88	0.036	0
+Contig73_chr9_29451535_29452248	616	A	G	24.7	chr9	29452127	G	4	0	2	39	7	0	2	48	1	0	2	30	4	0	2	39	7	0	2	48	6	0	2	45	N	49	0.448	4
+Contig96_chr9_39008495_39009278	215	A	C	98.7	chr9	39008708	C	7	0	2	48	13	0	2	66	28	0	2	111	16	0	2	75	17	0	2	78	17	0	2	78	Y	8	0.427	1
+Contig22_chr10_15505382_15505589	172	T	C	38.5	chr10	15505548	T	2	0	2	33	6	0	2	45	8	0	2	51	8	0	2	51	9	0	2	54	12	0	2	63	N	284	2.861	0
+Contig69_chr10_40547265_40548153	371	G	A	58.1	chr10	40547649	A	9	0	2	54	8	0	2	51	8	0	2	51	9	0	2	54	4	0	2	39	5	0	2	42	Y	20	0.138	4
+Contig63_chr10_42716594_42719945	1018	A	G	88.7	chr10	42717616	G	13	0	2	66	14	0	2	69	13	0	2	66	12	0	2	63	18	0	2	81	5	0	2	42	Y	25	1.740	0
+Contig22_chr10_43255307_43255570	81	C	A	37.2	chr10	43255383	C	15	0	2	72	18	0	2	81	22	0	2	93	16	0	2	75	11	0	2	60	12	0	2	63	N	62	0.450	0
+Contig9_chr10_51475063_51476054	770	C	T	57.3	chr10	51475839	C	6	0	2	45	16	0	2	75	16	0	2	75	13	0	2	66	9	0	2	54	9	2	2	21	N	80	0.394	0
+Contig42_chr10_53816543_53818392	1642	G	A	27.5	chr10	53818172	A	7	0	2	48	13	0	2	66	17	0	2	78	14	0	2	69	19	0	2	84	16	0	2	75	N	1	0.433	0
+Contig36_chr10_53992615_53993741	229	G	C	86.2	chr10	53992846	G	17	0	2	78	14	0	2	69	13	0	2	66	15	0	2	72	12	0	2	63	15	0	2	72	N	23	1.912	0
+Contig20_chr10_58141129_58141750	575	C	T	46.1	chr10	58141701	C	7	0	2	48	8	0	2	51	9	0	2	54	3	0	2	36	4	0	2	39	9	0	2	54	N	1	4.264	0
+Contig26_chr10_59510973_59511899	146	C	A	29.0	chr10	59511126	C	8	0	2	51	13	0	2	66	18	0	2	81	13	0	2	66	10	0	2	57	7	0	2	48	Y	208	1.077	0
+Contig72_chr11_7142765_7143772	146	G	A	152.0	chr11	7142911	A	8	0	2	51	8	0	2	51	24	0	2	99	10	0	2	57	17	0	2	78	11	0	2	60	Y	90	1.137	0
+Contig103_chr11_8844784_8845095	214	T	G	135.0	chr11	8844993	T	1	1	2	12	10	0	2	57	5	4	1	26	2	3	1	13	2	7	1	34	1	1	2	13	Y	75	0.731	0
+Contig9_chr11_9904571_9905983	1284	C	T	151.0	chr11	9905857	C	16	0	2	75	19	0	2	84	17	0	2	78	16	0	2	75	12	0	2	63	13	1	2	44	Y	11	0.422	1
+Contig35_chr11_22459883_22460855	714	T	G	54.9	chr11	22460577	T	3	0	2	36	1	0	2	30	3	0	2	36	2	0	2	33	2	0	2	33	0	0	-1	0	N	24	0.382	0
+Contig7_chr11_40017076_40017630	352	C	T	46.3	chr11	40017422	C	7	0	2	48	9	0	2	54	6	0	2	45	8	0	2	51	16	0	2	75	9	0	2	54	Y	44	0.336	0
+Contig108_chr11_42953408_42955156	367	A	G	89.4	chr11	42953779	A	17	0	2	78	11	0	2	60	14	0	2	69	20	0	2	87	14	0	2	69	17	0	2	78	Y	118	0.784	1
+Contig82_chr11_43490732_43490862	60	C	T	47.3	chr11	-1	N	0	0	-1	0	0	0	-1	0	1	0	2	30	3	0	2	36	1	1	2	19	1	0	2	30	N	-1	6.763	0
+Contig16_chr11_53408448_53408790	187	A	G	153.0	chr11	53408638	A	7	0	2	48	9	0	2	54	18	0	2	81	10	0	2	57	11	0	2	60	12	0	2	63	Y	116	1.367	0
+Contig21_chr12_18403415_18404381	586	G	T	34.5	chr12	18403983	-	13	0	2	66	16	0	2	75	25	0	2	102	12	0	2	63	12	0	2	63	14	0	2	69	Y	12	0.068	0
+Contig33_chr12_19804073_19804529	178	T	C	69.4	chr12	19804261	T	13	0	2	66	13	0	2	66	22	0	2	93	11	0	2	60	12	0	2	63	18	0	2	81	Y	11	1.571	0
+Contig41_chr12_25565452_25566993	475	G	T	6.29	chr12	25565926	G	15	0	2	72	14	0	2	69	10	0	2	57	15	0	2	72	18	0	2	81	19	0	2	84	N	10	2.231	1
+Contig9_chr12_27204351_27204696	239	A	G	145.0	chr12	27204587	A	7	0	2	48	8	0	2	51	12	0	2	63	8	0	2	51	11	0	2	60	11	0	2	60	Y	14	0.046	0
+Contig45_chr12_30548282_30550498	448	C	T	124.0	chr12	30548703	-	9	0	2	54	11	0	2	60	22	0	2	93	19	0	2	84	12	0	2	63	12	0	2	63	Y	66	0.305	0
+Contig46_chr12_35571846_35572563	58	G	C	83.2	chr12	35571906	G	4	0	2	39	10	0	2	57	11	0	2	60	6	0	2	45	10	0	2	57	6	0	2	45	Y	55	+99.	1
+Contig28_chr12_42075871_42076044	136	G	A	134.0	chr12	42076006	A	6	0	2	45	5	0	2	42	7	0	2	48	7	0	2	48	2	0	2	33	4	0	2	39	N	3	9.479	0
+Contig16_chr12_42386141_42387454	194	A	G	161.0	chr12	42386323	A	11	0	2	60	8	0	2	54	23	0	2	96	17	0	2	78	6	0	2	45	13	0	2	66	Y	7	0.927	1
+Contig42_chr12_44424628_44425829	255	A	G	84.4	chr12	44424879	A	12	0	2	63	19	0	2	84	23	0	2	96	15	0	2	72	18	0	2	81	14	0	2	69	Y	18	1.190	2
+Contig10_chr12_44447953_44449698	63	C	T	105.0	chr12	44448020	C	11	0	2	60	9	0	2	54	12	0	2	63	10	0	2	57	15	0	2	72	8	0	2	51	Y	31	11.791	0
+Contig5_chr12_53880670_53882675	1221	A	C	99.4	chr12	53881888	A	16	0	2	75	18	0	2	81	23	0	2	96	10	0	2	57	15	0	2	72	17	0	2	78	Y	31	0.061	0
+Contig86_chr12_56715356_56716464	818	T	C	166.0	chr12	56716164	T	20	0	2	87	16	0	2	75	16	0	2	75	14	0	2	69	13	0	2	66	7	0	2	48	Y	22	1.092	0
+Contig3_chr12_65021967_65024097	238	T	G	92.6	chr12	65022205	T	17	0	2	78	14	0	2	69	16	0	2	75	9	0	2	54	13	0	2	66	15	0	2	72	Y	258	0.117	0
+Contig43_chr12_66499742_66500010	121	G	T	41.5	chr12	66499866	G	12	0	2	63	4	0	2	39	8	0	2	51	6	0	2	45	10	0	2	57	6	0	2	45	N	42	0.421	0
+Contig14_chr12_71364692_71365311	20	A	C	103.0	chr12	71364712	A	7	0	2	48	3	0	2	36	5	0	2	42	1	0	2	30	2	0	2	33	3	0	2	36	Y	35	+99.	0
+Contig37_chr13_15910164_15910426	245	G	A	32.9	chr13	-1	N	3	4	1	41	4	0	2	39	3	0	2	36	4	0	2	39	3	0	2	36	10	0	2	57	N	-1	2.159	1
+Contig107_chr13_26045881_26046290	341	C	G	81.4	chr13	26046230	C	16	0	2	75	20	0	2	90	14	0	2	69	15	0	2	72	9	0	2	54	9	0	2	54	Y	51	4.510	0
+Contig251_chr13_28498333_28501066	864	T	G	296.0	chr13	28499180	T	3	0	2	36	5	0	2	42	4	0	2	39	2	0	2	33	5	0	2	42	6	0	2	45	Y	9	0.068	0
+Contig154_chr13_36777857_36778736	356	G	A	95.5	chr13	36778225	A	6	0	2	45	11	0	2	60	11	0	2	60	9	0	2	54	13	0	2	66	8	0	2	51	Y	59	0.192	0
+Contig37_chr13_42529793_42530857	150	G	T	192.0	chr13	42529926	G	18	0	2	81	14	0	2	69	16	0	2	75	14	0	2	69	8	0	2	51	11	0	2	60	N	22	0.795	5
+Contig47_chr13_47045833_47046626	257	A	C	28.5	chr13	47046097	A	13	0	2	66	10	0	2	57	17	0	2	78	20	0	2	87	15	0	2	72	9	0	2	57	N	129	0.468	0
+Contig42_chr13_47730018_47730856	254	A	G	75.1	chr13	47730294	A	13	0	2	66	6	0	2	45	12	0	2	63	9	0	2	54	16	0	2	75	11	0	2	63	Y	630	0.049	1
+Contig55_chr13_53467708_53468101	221	T	G	132.0	chr13	53467925	T	25	0	2	102	12	0	2	63	26	0	2	105	7	0	2	48	16	0	2	75	16	0	2	75	N	20	5.717	1
+Contig49_chr13_55103679_55105532	503	G	A	76.0	chr13	55104178	G	21	0	2	90	19	0	2	84	18	0	2	81	20	0	2	87	8	9	1	89	17	0	2	78	Y	20	0.259	1
+Contig42_chr13_64785759_64786045	14	C	G	22.8	chr13	64785772	C	2	0	2	33	2	0	2	33	4	0	2	39	7	0	2	48	8	0	2	51	2	0	2	33	N	527	+99.	1
+Contig66_chr13_66021813_66022244	319	C	T	125.0	chr13	66022136	C	11	0	2	60	16	0	2	75	15	0	2	75	12	0	2	63	17	0	2	78	8	0	2	51	N	14	0.055	3
+Contig48_chr14_11839435_11843272	3014	A	G	163.0	chr14	11842446	A	10	0	2	57	8	0	2	51	13	0	2	66	10	0	2	57	5	0	2	42	10	0	2	57	Y	31	0.908	0
+Contig9_chr14_23353717_23354432	80	G	A	61.3	chr14	23353797	G	3	0	2	36	6	0	2	45	11	0	2	60	8	0	2	51	4	0	2	39	2	4	1	35	Y	11	0.444	0
+Contig14_chr14_24131180_24133488	1633	G	A	131.0	chr14	24132818	G	21	0	2	90	16	0	2	75	12	0	2	63	10	0	2	57	11	0	2	60	20	0	2	87	Y	36	0.347	0
+Contig28_chr14_26905747_26909514	975	G	C	3.13	chr14	26906723	G	16	0	2	75	10	0	2	57	12	0	2	63	15	0	2	72	10	0	2	57	7	0	2	48	N	287	0.117	2
+Contig14_chr14_29616948_29618316	109	G	A	80.3	chr14	29617053	-	17	0	2	78	16	0	2	75	16	0	2	75	10	0	2	57	17	0	2	78	19	0	2	84	Y	32	1.051	0
+Contig24_chr14_29728478_29728839	242	T	A	107.0	chr14	29728724	T	2	0	2	33	12	0	2	63	10	0	2	57	12	0	2	63	5	0	2	42	9	0	2	54	N	70	2.712	0
+Contig76_chr14_30028102_30029179	1046	C	T	38.5	chr14	30029169	T	3	0	2	36	6	0	2	45	9	0	2	54	7	0	2	48	9	0	2	54	8	0	2	51	Y	96	+99.	0
+Contig115_chr14_31417207_31417574	259	A	G	12.1	chr14	31417454	G	13	0	2	66	15	0	2	72	21	0	2	90	12	0	2	63	13	0	2	66	9	0	2	54	N	28	5.379	2
+Contig70_chr14_46653662_46653790	111	G	A	46.7	chr14	46653768	G	7	0	2	48	5	0	2	42	11	0	2	60	11	0	2	60	8	0	2	51	10	0	2	57	N	21	+99.	2
+Contig43_chr14_49991855_49993511	918	A	G	112.0	chr14	49992767	G	15	0	2	72	10	0	2	57	11	0	2	63	9	0	2	54	12	0	2	63	9	0	2	54	Y	6	0.314	1
+Contig64_chr14_56768376_56768902	473	C	T	29.0	chr14	56768832	C	15	0	2	72	11	0	2	60	14	0	2	69	14	0	2	69	7	0	2	48	9	0	2	54	Y	91	8.281	0
+Contig60_chr15_18493036_18494316	150	G	A	92.6	chr15	18493188	G	9	0	2	54	13	0	2	66	9	0	2	54	6	0	2	45	5	0	2	42	12	0	2	63	Y	45	0.125	0
+Contig213_chr15_19567788_19568626	196	A	C	13.9	chr15	19567992	A	4	0	2	39	2	0	2	33	7	0	2	48	4	0	2	39	4	0	2	39	6	0	2	45	Y	111	0.043	0
+Contig59_chr15_22138344_22138535	120	G	C	142.0	chr15	22138470	C	11	0	2	60	10	0	2	57	18	0	2	81	4	0	2	39	10	0	2	57	15	0	2	72	N	8	2.553	0
+Contig112_chr15_26772864_26773267	374	C	T	21.6	chr15	26773244	C	4	0	2	39	4	0	2	39	5	0	2	42	2	0	2	33	4	0	2	39	3	0	2	36	N	18	+99.	0
+Contig24_chr15_26894765_26895003	155	G	A	87.6	chr15	-1	N	6	0	2	45	5	0	2	42	7	0	2	48	4	0	2	39	4	0	2	39	2	0	2	33	N	-1	0.178	0
+Contig2_chr15_33944796_33947182	1860	G	A	99.5	chr15	33946654	G	10	0	2	57	11	0	2	60	16	0	2	75	14	0	2	69	14	0	2	69	16	0	2	75	Y	16	0.252	0
+Contig73_chr15_34690052_34691332	714	T	C	130.0	chr15	34690769	T	7	0	2	48	7	0	2	48	17	0	2	78	9	0	2	54	9	0	2	54	4	0	2	39	Y	7	6.003	0
+Contig68_chr15_37747190_37747426	126	G	A	130.0	chr15	37747331	G	14	0	2	69	14	0	2	69	11	0	2	63	19	0	2	84	13	0	2	66	21	0	2	90	N	229	0.255	0
+Contig35_chr15_41400484_41400672	160	A	C	143.0	chr15	-1	N	1	0	2	30	2	0	2	33	0	0	-1	0	2	0	2	33	3	0	2	36	2	0	2	33	N	-1	+99.	0
+Contig104_chr15_45106954_45107158	70	A	T	64.4	chr15	45107015	A	6	0	2	45	6	0	2	45	19	0	2	84	7	0	2	48	7	0	2	48	3	0	2	36	N	202	4.319	0
+Contig119_chr16_6160274_6160477	180	G	A	54.8	chr16	6160457	G	7	0	2	48	6	0	2	45	12	0	2	63	3	0	2	36	11	0	2	60	10	0	2	57	N	42	+99.	0
+Contig126_chr16_10611887_10612152	150	G	T	145.0	chr16	10612037	G	14	0	2	69	9	0	2	54	11	0	2	63	8	0	2	51	8	0	2	51	11	0	2	60	N	15	0.104	6
+Contig114_chr16_12565220_12565676	10	G	A	134.0	chr16	12565230	G	0	0	-1	0	2	0	2	33	2	0	2	33	0	0	-1	0	1	0	2	30	1	0	2	30	N	333	+99.	0
+Contig43_chr16_20200090_20200514	70	A	G	58.6	chr16	20200154	A	11	0	2	60	15	0	2	72	15	0	2	72	6	0	2	45	9	0	2	54	12	0	2	63	Y	2	0.466	1
+Contig60_chr16_28079136_28080263	588	T	G	157.0	chr16	28079739	T	22	0	2	93	20	0	2	87	22	0	2	93	17	0	2	78	12	0	2	63	10	0	2	57	Y	105	5.999	1
+Contig70_chr16_33758668_33759655	104	A	T	58.1	chr16	33758772	A	6	0	2	45	7	0	2	48	17	0	2	78	14	0	2	69	8	0	2	51	10	0	2	57	N	54	0.162	0
+Contig66_chr16_37935682_37935831	116	T	C	99.2	chr16	37935802	C	12	0	2	63	6	0	2	45	19	0	2	84	12	0	2	63	13	0	2	66	17	0	2	78	N	266	+99.	2
+Contig16_chr16_40451506_40451643	84	A	G	59.8	chr16	40451592	A	7	0	2	48	5	0	2	42	7	0	2	48	13	0	2	66	14	0	2	69	19	0	2	84	N	45	5.061	0
+Contig53_chr16_49888293_49888587	260	G	A	108.0	chr16	49888550	A	4	0	2	39	1	0	2	30	3	0	2	36	5	0	2	42	2	0	2	33	2	0	2	33	Y	9	0.261	1
+Contig31_chr17_12128267_12129637	205	G	A	90.5	chr17	12128484	G	7	0	2	48	6	0	2	45	6	0	2	45	11	0	2	60	7	0	2	48	4	0	2	39	Y	10	0.246	0
+Contig50_chr17_12247973_12249183	889	G	T	47.6	chr17	12248878	G	0	1	2	9	8	0	2	51	9	2	2	21	7	2	2	21	15	0	2	72	0	3	0	9	Y	1	1.181	0
+Contig1_chr17_12979232_12980380	808	G	T	12.3	chr17	12980028	G	18	0	2	81	12	0	2	63	21	0	2	90	13	0	2	66	22	0	2	93	18	0	2	81	Y	9	0.336	1
+Contig63_chr17_14186372_14186928	54	C	T	70.7	chr17	14186427	C	6	0	2	45	2	0	2	33	5	0	2	42	6	0	2	45	3	0	2	36	3	0	2	36	Y	11	0.560	3
+Contig42_chr17_23434859_23438330	2100	C	T	39.5	chr17	23436985	T	4	0	2	39	7	0	2	48	7	0	2	48	3	0	2	36	6	0	2	45	2	0	2	33	Y	25	0.344	0
+Contig63_chr17_23796320_23796814	220	A	G	54.0	chr17	23796536	G	6	0	2	45	4	0	2	39	5	0	2	42	6	0	2	45	4	0	2	39	6	0	2	45	Y	139	0.067	1
+Contig76_chr17_24107434_24107834	316	T	C	141.0	chr17	24107726	T	19	0	2	84	15	0	2	72	20	0	2	87	16	0	2	75	11	0	2	60	18	0	2	81	Y	30	0.175	2
+Contig99_chr17_26021506_26022200	505	C	T	88.8	chr17	26022017	T	15	0	2	72	13	0	2	66	19	0	2	84	9	0	2	54	10	0	2	57	11	0	2	60	Y	1	0.172	1
+Contig59_chr17_26790302_26795045	287	C	T	45.1	chr17	26790582	C	8	0	2	51	6	0	2	45	13	0	2	66	6	0	2	45	15	0	2	72	12	0	2	63	Y	75	0.019	1
+Contig99_chr17_27018324_27019378	446	G	A	31.1	chr17	27018776	G	14	0	2	69	12	0	2	63	14	0	2	69	10	0	2	57	9	0	2	54	11	0	2	60	Y	13	0.290	4
+Contig125_chr17_27739115_27739410	63	G	A	107.0	chr17	27739177	G	8	0	2	51	11	0	2	60	16	0	2	75	8	0	2	51	4	0	2	39	15	0	2	72	N	100	0.819	0
+Contig115_chr17_37489899_37490101	159	G	A	62.4	chr17	37490067	G	4	0	2	39	3	0	2	36	4	0	2	39	4	0	2	39	3	0	2	36	6	0	2	45	N	4	1.411	1
+Contig180_chr17_45154356_45154925	524	A	G	146.0	chr17	45154886	G	7	0	2	48	9	0	2	54	7	0	2	48	9	0	2	54	4	0	2	39	8	0	2	51	Y	11	+99.	2
+Contig61_chr17_48221795_48223545	1404	T	A	177.0	chr17	48223216	T	15	0	2	72	14	0	2	69	24	0	2	99	17	0	2	78	18	0	2	81	24	0	2	99	Y	161	0.633	2
+Contig27_chr17_61713766_61716585	1056	G	C	40.0	chr17	61714821	G	4	0	2	39	8	0	2	51	10	0	2	57	6	0	2	45	6	0	2	45	3	0	2	36	N	6	2.200	4
+Contig229_chr18_3706523_3708577	1076	A	G	83.9	chr18	3707630	A	11	0	2	60	13	0	2	66	26	0	2	105	11	0	2	60	15	0	2	72	17	0	2	78	Y	63	0.445	0
+Contig24_chr18_14049894_14050480	24	A	G	123.0	chr18	14049918	A	5	0	2	42	5	0	2	42	4	0	2	39	6	0	2	45	7	0	2	48	5	0	2	42	Y	17	+99.	0
+Contig30_chr18_18771753_18772121	39	C	G	48.5	chr18	18771787	C	2	0	2	33	5	0	2	42	2	0	2	33	6	0	2	45	3	0	2	36	2	0	2	33	N	5	0.135	0
+Contig123_chr18_19916160_19916379	116	G	A	79.2	chr18	19916272	A	14	0	2	69	12	0	2	63	14	0	2	69	6	0	2	45	11	0	2	60	10	0	2	57	N	26	0.172	0
+Contig82_chr18_27305489_27306229	566	C	T	49.5	chr18	27306051	A	6	0	2	45	6	0	2	45	10	0	2	57	11	0	2	60	6	0	2	45	7	0	2	48	N	1	0.349	0
+Contig71_chr18_34324706_34326687	136	G	A	151.0	chr18	34324841	G	9	0	2	54	9	0	2	54	17	0	2	78	8	0	2	51	11	0	2	60	10	0	2	57	Y	2	2.129	2
+Contig16_chr18_34672093_34673044	538	T	C	58.2	chr18	34672635	T	8	0	2	51	15	0	2	72	16	0	2	75	15	0	2	72	9	0	2	57	18	0	2	81	Y	8	0.214	1
+Contig96_chr18_38492535_38493333	624	G	A	119.0	chr18	38493162	T	17	0	2	78	12	0	2	63	13	0	2	66	16	0	2	75	8	0	2	51	15	0	2	72	Y	127	0.131	0
+Contig226_chr18_47753756_47754666	427	T	C	21.1	chr18	47754215	T	10	0	2	57	4	0	2	39	8	0	2	51	5	0	2	42	6	0	2	45	7	0	2	48	Y	42	0.522	0
+Contig170_chr18_49411558_49412230	94	C	A	74.3	chr18	49411655	C	14	0	2	69	10	0	2	57	9	0	2	54	10	0	2	57	3	0	2	36	3	0	2	36	N	9	1.457	0
+Contig192_chr18_49419342_49420737	1058	C	T	42.8	chr18	49420381	A	3	0	2	36	4	0	2	39	5	0	2	42	8	0	2	51	3	0	2	36	3	0	2	36	Y	34	2.107	2
+Contig64_chr18_55979770_55980315	49	G	A	89.1	chr18	55979824	G	3	0	2	36	9	0	2	54	7	0	2	51	4	0	2	39	3	0	2	36	3	0	2	36	Y	-1	2.124	0
+Contig20_chr18_58130301_58130735	112	A	G	74.4	chr18	58130413	A	12	0	2	66	11	0	2	60	11	0	2	60	12	0	2	63	6	0	2	45	6	0	2	45	Y	10	0.290	0
+Contig146_chr19_5221790_5223013	143	A	G	114.0	chr19	5221916	-	1	0	2	30	4	0	2	39	3	0	2	36	5	0	2	42	2	0	2	33	5	0	2	42	Y	12	0.870	0
+Contig13_chr19_7739961_7740118	26	C	G	220.0	chr19	-1	N	3	0	2	36	1	0	2	30	2	0	2	33	3	0	2	36	1	0	2	30	2	0	2	33	N	-1	+99.	0
+Contig67_chr19_12398520_12399367	499	C	T	161.0	chr19	12399017	C	10	0	2	57	11	0	2	60	20	0	2	87	14	0	2	69	24	0	2	99	8	0	2	51	Y	137	5.634	0
+Contig66_chr19_16285672_16287223	996	C	T	190.0	chr19	16286674	C	9	0	2	57	14	0	2	69	16	0	2	78	17	0	2	78	8	0	2	51	22	0	2	93	Y	40	0.110	0
+Contig129_chr19_25541958_25542221	202	T	C	68.1	chr19	25542154	C	11	0	2	60	19	0	2	84	10	0	2	60	17	0	2	78	9	0	2	54	12	0	2	63	N	-1	2.551	1
+Contig152_chr19_34274440_34275622	1072	C	T	48.0	chr19	34275509	T	1	0	2	30	2	0	2	33	1	0	2	30	1	0	2	30	4	0	2	39	5	0	2	42	N	71	0.309	0
+Contig29_chr19_37339947_37341911	1692	C	T	211.0	chr19	37341631	C	15	0	2	72	20	0	2	87	11	0	2	60	15	0	2	72	3	0	2	36	12	0	2	63	Y	7	0.096	0
+Contig39_chr19_47709708_47711327	444	C	T	36.8	chr19	47710148	T	10	0	2	57	4	0	2	39	8	0	2	51	9	0	2	54	6	0	2	45	6	0	2	45	Y	95	1.251	1
+Contig60_chr19_54013816_54014398	281	A	G	138.0	chr19	54014103	C	6	0	2	45	15	0	2	72	7	0	2	48	10	0	2	57	15	0	2	72	10	0	2	57	Y	188	1.271	0
+Contig251_chr19_56559098_56559626	452	T	C	3.36	chr19	56559549	T	12	0	2	63	13	0	2	66	21	0	2	90	15	0	2	72	14	0	2	69	11	0	2	60	N	1	0.117	0
+Contig50_chr20_12138509_12141975	3206	C	A	248.0	chr20	12141763	C	8	0	2	51	15	0	2	72	14	0	2	69	6	0	2	45	10	0	2	57	7	0	2	48	Y	2	0.384	0
+Contig36_chr20_32631363_32632049	176	G	A	24.1	chr20	32631526	G	7	0	2	48	14	0	2	69	19	0	2	84	14	0	2	69	15	0	2	72	16	0	2	75	N	50	1.150	0
+Contig39_chr20_36316398_36316498	57	C	T	30.3	chr20	36316455	C	2	0	2	33	0	1	2	8	0	0	-1	0	0	1	2	10	0	0	-1	0	0	0	-1	0	N	-483	+99.	0
+Contig32_chr20_36468058_36468869	66	C	T	40.4	chr20	36468127	C	6	0	2	45	3	0	2	36	4	0	2	39	5	0	2	42	3	0	2	36	4	0	2	39	N	59	0.281	0
+Contig24_chr20_38203888_38204900	834	C	T	132.0	chr20	38204731	C	9	0	2	54	17	0	2	78	20	0	2	87	8	0	2	51	11	0	2	60	17	0	2	78	Y	14	0.397	0
+Contig79_chr20_44263127_44264103	456	G	T	31.5	chr20	44263573	G	22	0	2	93	16	0	2	75	15	0	2	72	19	0	2	84	13	0	2	66	26	0	2	105	Y	8	3.250	0
+Contig26_chr20_45878482_45878787	197	A	G	160.0	chr20	45878672	A	17	0	2	78	15	0	2	72	11	0	2	63	17	0	2	78	12	0	2	63	10	0	2	57	N	14	0.535	0
+Contig119_chr20_46550670_46551383	609	G	A	139.0	chr20	46551277	G	7	0	2	48	17	0	2	78	19	0	2	84	20	0	2	87	9	0	2	54	15	0	2	72	Y	7	0.488	1
+Contig50_chr21_4178523_4178687	121	G	A	362.0	chr21	4178640	G	8	0	2	51	14	0	2	69	5	0	2	42	3	0	2	36	11	0	2	60	4	0	2	39	N	392	0.483	0
+Contig103_chr21_10177255_10177765	121	G	A	125.0	chr21	10177367	G	12	0	2	63	10	0	2	57	10	0	2	57	17	0	2	78	14	0	2	69	7	0	2	51	Y	37	0.213	3
+Contig1_chr21_10805534_10806399	766	A	G	146.0	chr21	10806301	G	10	0	2	57	6	0	2	45	9	0	2	54	6	0	2	45	7	0	2	48	5	0	2	42	Y	20	0.319	0
+Contig46_chr21_21029492_21030645	443	C	T	5.37	chr21	21029910	C	15	0	2	72	11	0	2	60	16	0	2	75	15	0	2	72	13	0	2	66	6	0	2	45	Y	96	3.737	0
+Contig129_chr21_31045749_31046924	381	A	G	129.0	chr21	31046141	A	19	0	2	84	8	0	2	51	23	0	2	96	12	0	2	63	15	0	2	72	18	0	2	81	Y	69	0.028	2
+Contig23_chr21_31651123_31651986	840	C	T	71.3	chr21	31651957	T	6	0	2	45	9	0	2	54	8	0	2	51	10	0	2	57	4	0	2	39	7	0	2	48	Y	105	2.977	3
+Contig64_chr21_43341847_43342031	84	T	C	114.0	chr21	43341926	T	11	0	2	60	9	0	2	54	10	0	2	57	6	0	2	45	6	0	2	45	7	0	2	48	N	10	3.954	2
+Contig60_chr21_43475347_43475824	175	C	T	8.05	chr21	43475551	T	6	0	2	45	7	0	2	48	13	0	2	66	6	0	2	45	14	0	2	69	14	0	2	69	N	45	0.058	0
+Contig64_chr21_45377513_45377872	19	C	T	60.7	chr21	-1	N	3	0	2	36	2	0	2	33	1	0	2	30	0	0	-1	0	3	0	2	36	1	0	2	30	N	-1	+99.	1
+Contig159_chr22_7896450_7896974	109	G	C	151.0	chr22	7896570	G	16	0	2	75	5	7	1	62	14	0	2	69	16	0	2	75	13	0	2	66	13	0	2	66	Y	16	0.465	0
+Contig46_chr22_9416920_9417467	381	G	A	145.0	chr22	9417259	G	10	0	2	57	9	0	2	54	10	0	2	57	6	0	2	45	13	0	2	66	7	0	2	48	Y	154	0.242	0
+Contig86_chr22_9440787_9441725	713	T	G	119.0	chr22	9441488	G	6	0	2	45	12	0	2	63	10	0	2	57	11	0	2	60	13	0	2	66	16	0	2	75	Y	132	0.218	0
+Contig16_chr22_15636960_15637372	236	A	C	9.79	chr22	15637192	T	4	0	2	39	5	0	2	42	12	0	2	63	7	0	2	48	6	0	2	45	11	0	2	60	Y	5	2.163	0
+Contig4_chr22_16114310_16114546	128	G	C	101.0	chr22	16114432	G	10	0	2	57	13	0	2	66	20	0	2	87	20	0	2	87	16	0	2	75	9	0	2	54	N	19	0.526	0
+Contig23_chr22_34612023_34612568	167	C	G	92.3	chr22	34612181	C	11	0	2	60	18	0	2	81	13	0	2	66	8	0	2	51	12	0	2	63	14	0	2	69	Y	7	0.409	0
+Contig4_chr22_38252245_38253712	799	A	C	159.0	chr22	38253064	A	18	0	2	81	15	0	2	72	15	0	2	72	20	0	2	87	27	0	2	108	15	0	2	72	Y	90	4.330	0
+Contig122_chr22_48412466_48414788	1888	C	T	125.0	chr22	48414355	T	16	0	2	75	15	0	2	72	16	0	2	75	14	0	2	72	12	0	2	63	7	0	2	48	N	42	0.122	0
+Contig77_chr22_49764414_49764875	353	C	A	148.0	chr22	49764777	C	7	4	1	65	18	0	2	81	16	0	2	75	20	0	2	87	4	3	1	52	9	4	1	67	Y	12	0.941	0
+Contig26_chr22_57817664_57819633	1453	A	G	150.0	chr22	57819121	G	9	0	2	54	9	0	2	54	13	0	2	66	15	0	2	72	11	0	2	60	14	0	2	69	N	15	0.471	1
+Contig348_chr22_62406104_62406495	189	C	A	134.0	chr22	62406302	A	9	0	2	54	14	0	2	69	11	0	2	60	10	0	2	57	12	0	2	63	6	0	2	45	Y	5	0.912	0
+Contig133_chr23_3525134_3526502	1223	A	G	201.0	chr23	3526387	A	11	0	2	60	13	0	2	66	23	0	2	96	21	0	2	90	13	0	2	66	10	0	2	57	Y	61	1.359	0
+Contig111_chr23_7058063_7058181	107	G	A	108.0	chr23	7058162	A	8	0	2	51	8	0	2	51	7	0	2	48	2	0	2	33	5	0	2	42	6	0	2	45	N	3	+99.	0
+Contig79_chr23_7844129_7844837	110	C	A	141.0	chr23	7844237	T	13	0	2	66	15	0	2	72	17	0	2	78	12	0	2	63	15	0	2	72	16	0	2	75	Y	40	0.339	0
+Contig38_chr23_9201002_9201725	597	C	T	155.0	chr23	9201609	T	17	0	2	78	8	0	2	51	13	0	2	66	5	0	2	42	11	0	2	60	7	0	2	48	Y	167	0.633	1
+Contig33_chr23_20672540_20674320	347	T	A	91.4	chr23	20672885	A	11	0	2	60	14	0	2	69	15	0	2	72	7	0	2	48	12	0	2	63	18	0	2	81	Y	31	0.452	1
+Contig35_chr23_28447813_28449115	70	T	A	21.3	chr23	28447881	T	9	0	2	54	8	0	2	51	10	0	2	57	9	0	2	54	10	0	2	57	12	0	2	63	N	251	0.163	1
+Contig51_chr23_30590939_30591162	140	C	T	142.0	chr23	30591080	C	14	0	2	69	4	0	2	39	10	0	2	57	12	0	2	63	14	0	2	69	4	0	2	39	N	13	1.658	0
+Contig57_chr23_32216351_32216721	179	T	G	143.0	chr23	32216534	T	15	0	2	72	15	0	2	72	23	0	2	96	13	0	2	66	16	0	2	75	15	0	2	72	N	32	1.387	1
+Contig93_chr23_35744841_35745791	40	A	T	30.4	chr23	35744880	T	6	0	2	45	7	0	2	48	7	0	2	48	2	0	2	33	5	0	2	42	5	0	2	42	Y	50	2.173	0
+Contig99_chr23_42543966_42544147	14	G	A	357.0	chr23	42543980	G	4	0	2	39	2	0	2	33	3	0	2	36	3	0	2	36	1	0	2	30	2	0	2	33	N	69	+99.	0
+Contig32_chr23_48285289_48286638	186	T	C	176.0	chr23	48285470	T	18	0	2	81	12	0	2	63	16	0	2	75	13	0	2	66	9	0	2	54	9	0	2	54	Y	4	4.238	1
+Contig50_chr24_22515247_22516072	761	C	T	243.0	chr24	22515981	T	11	0	2	60	10	0	2	57	8	0	2	51	9	0	2	54	18	0	2	81	8	0	2	51	Y	1	0.190	0
+Contig92_chr24_28935897_28936321	13	G	A	47.1	chr24	-1	N	2	0	2	33	1	0	2	30	0	0	-1	0	0	0	-1	0	1	0	2	30	0	0	-1	0	Y	-1	+99.	2
+Contig84_chr24_29196623_29199644	466	C	T	126.0	chr24	29197091	T	7	0	2	48	11	0	2	60	8	0	2	51	7	0	2	48	11	0	2	60	15	0	2	72	Y	42	0.215	0
+Contig35_chr24_30150986_30151507	492	A	C	114.0	chr24	30151448	A	5	0	2	42	2	0	2	33	2	0	2	33	3	0	2	36	3	0	2	36	5	0	2	42	N	41	2.587	6
+Contig61_chr24_30465488_30465834	149	G	T	68.2	chr24	30465637	G	13	0	2	66	4	2	2	11	18	0	2	81	11	0	2	60	11	0	2	60	9	0	2	54	N	99	0.105	2
+Contig145_chr24_34778364_34778898	163	T	C	372.0	chr24	34778541	C	10	0	2	57	8	0	2	51	12	0	2	63	12	0	2	63	6	1	2	31	7	0	2	48	Y	40	0.037	0
+Contig34_chr24_36147443_36150244	2679	C	T	140.0	chr24	36150125	C	13	0	2	66	7	0	2	48	14	0	2	69	14	0	2	69	10	0	2	57	13	0	2	66	N	282	0.099	1
+Contig164_chr24_46598127_46599206	84	C	T	105.0	chr24	46598214	C	13	0	2	66	12	0	2	63	15	0	2	72	15	0	2	72	11	0	2	60	8	0	2	51	Y	22	1.262	1
+Contig144_chr25_4011170_4013134	541	A	G	160.0	chr25	4011690	A	12	0	2	63	17	0	2	78	13	0	2	66	13	0	2	66	13	0	2	66	13	0	2	66	Y	5	0.087	0
+Contig81_chr25_6103472_6104760	699	G	A	378.0	chr25	6104190	A	14	0	2	69	16	0	2	75	13	0	2	66	11	0	2	60	11	0	2	60	12	0	2	63	Y	33	0.789	2
+Contig152_chr25_7486442_7487609	75	A	G	11.6	chr25	7486515	A	17	0	2	78	13	0	2	66	8	0	2	51	16	0	2	75	8	0	2	51	6	0	2	45	N	2	0.158	0
+Contig24_chr25_7695778_7698612	2714	C	T	130.0	chr25	7698446	C	16	0	2	75	13	0	2	66	22	0	2	93	17	0	2	78	10	0	2	57	17	0	2	78	Y	27	0.346	0
+Contig89_chr25_8635170_8636009	586	G	C	209.0	chr25	8635744	G	13	0	2	66	13	0	2	66	21	0	2	93	14	0	2	69	15	0	2	72	15	0	2	72	Y	14	0.067	0
+Contig77_chr25_10796299_10796481	2	T	C	17.3	chr25	-1	N	1	0	2	30	0	0	-1	0	1	0	2	30	0	0	-1	0	0	0	-1	0	0	0	-1	0	N	-1	+99.	0
+Contig73_chr25_14177327_14177474	125	A	C	6.85	chr25	14177464	A	0	0	-1	0	0	0	-1	0	0	0	-1	0	0	0	-1	0	0	0	-1	0	0	0	-1	0	N	27	+99.	1
+Contig59_chr25_18196776_18197707	785	G	A	112.0	chr25	18197551	G	8	10	1	42	27	0	2	108	21	0	2	90	18	0	2	81	10	0	2	57	14	0	2	69	N	36	3.625	0
+Contig103_chr25_38891221_38892140	407	G	A	131.0	chr25	38891644	G	8	0	2	51	14	0	2	69	18	0	2	81	8	0	2	51	8	0	2	51	11	0	2	60	Y	149	0.167	4
+Contig84_chr25_42407960_42408708	55	C	T	119.0	chr25	42408013	C	6	0	2	45	9	0	2	54	11	0	2	60	9	0	2	54	7	0	2	48	8	0	2	51	Y	11	0.121	0
+Contig73_chr25_43562500_43564110	955	T	C	52.1	chr25	43563469	C	9	0	2	57	4	0	2	39	6	0	2	45	5	0	2	42	7	0	2	48	10	0	2	57	Y	4	1.406	0
+Contig37_chr25_51074433_51074885	170	A	G	102.0	chr25	51074589	G	11	0	2	60	7	0	2	48	6	0	2	45	15	0	2	72	9	0	2	54	7	0	2	48	Y	68	0.207	1
+Contig204_chr26_4311195_4311778	170	C	T	16.9	chr26	4311363	T	20	0	2	87	8	0	2	51	13	0	2	66	18	0	2	81	11	0	2	60	14	0	2	69	N	35	0.085	0
+Contig122_chr26_7622321_7623491	106	C	G	139.0	chr26	7622423	C	3	0	2	36	9	0	2	54	10	0	2	57	12	0	2	63	9	0	2	54	5	0	2	42	N	19	0.458	0
+Contig11_chr26_11062142_11062902	707	C	A	108.0	chr26	11062836	T	7	0	2	48	8	0	2	51	16	0	2	75	10	0	2	57	6	0	2	45	14	0	2	69	Y	-1	4.709	0
+Contig133_chr26_17695661_17696368	39	T	G	98.7	chr26	17695700	T	10	0	2	57	3	0	2	36	11	0	2	60	9	0	2	54	2	0	2	33	1	0	2	30	N	85	3.402	0
+Contig157_chr26_23894107_23895229	25	C	T	50.2	chr26	23894140	C	0	0	-1	0	4	0	2	39	2	0	2	33	4	0	2	39	3	0	2	36	3	0	2	36	Y	51	+99.	0
+Contig146_chr26_26622638_26623906	574	G	A	186.0	chr26	26623219	A	11	0	2	60	12	0	2	63	9	0	2	54	11	0	2	60	9	0	2	54	12	0	2	63	Y	1	0.318	0
+Contig8_chr26_27834126_27834326	140	G	A	41.7	chr26	27834268	G	13	0	2	66	7	0	2	48	13	0	2	66	11	0	2	60	12	0	2	63	6	0	2	45	N	29	0.142	1
+Contig78_chr26_31128839_31129005	123	T	C	145.0	chr26	-1	N	11	0	2	60	3	0	2	36	7	0	2	48	8	0	2	51	10	0	2	46	7	0	2	48	N	-1	1.230	1
+Contig28_chr26_32935355_32935833	289	T	C	77.9	chr26	32935638	T	15	0	2	72	22	0	2	93	15	0	2	72	9	0	2	54	15	0	2	72	17	0	2	78	Y	10	2.258	1
+Contig36_chr26_36606876_36607240	115	A	T	139.0	chr26	36606979	A	1	0	2	30	7	0	2	48	14	0	2	69	13	0	2	66	9	0	2	54	3	0	2	36	Y	8	0.071	0
+Contig135_chr27_6853874_6854079	158	C	T	116.0	chr27	6854032	T	18	0	2	81	19	0	2	84	13	0	2	66	7	0	2	48	8	0	2	51	11	0	2	60	N	4	0.060	1
+Contig47_chr27_11777710_11777915	25	A	G	67.3	chr27	11777731	A	3	0	2	36	5	0	2	42	6	0	2	45	10	0	2	57	9	0	2	54	6	0	2	45	N	97	+99.	0
+Contig23_chr27_14633002_14633153	23	G	A	128.0	chr27	14633023	A	3	0	2	36	4	0	2	39	5	0	2	42	5	0	2	42	3	0	2	36	2	0	2	33	N	240	3.881	0
+Contig31_chr27_14987233_14988055	630	A	G	48.5	chr27	14987850	G	10	0	2	57	2	0	2	33	4	0	2	39	4	0	2	39	1	0	2	30	4	0	2	39	Y	9	0.089	1
+Contig29_chr27_15428166_15429413	380	T	C	140.0	chr27	15428539	T	15	0	2	72	15	0	2	72	17	0	2	78	15	0	2	72	15	0	2	72	15	0	2	72	Y	47	0.916	1
+Contig31_chr27_19519489_19520891	129	G	T	14.9	chr27	19519624	T	12	0	2	63	19	0	2	84	20	0	2	87	16	0	2	75	10	0	2	57	11	0	2	60	Y	48	2.756	0
+Contig64_chr27_34654435_34654621	132	C	A	115.0	chr27	34654567	T	2	0	2	33	2	0	2	33	5	0	2	42	3	0	2	36	3	0	2	36	8	0	2	51	N	12	0.297	1
+Contig35_chr27_40596169_40596445	20	G	C	133.0	chr27	40596189	G	8	0	2	51	3	0	2	36	4	0	2	39	2	0	2	33	4	0	2	39	4	0	2	39	Y	4	+99.	1
+Contig85_chr27_45471750_45472022	211	G	A	53.1	chr27	45471964	G	18	0	2	81	10	0	2	57	15	0	2	72	0	13	0	36	16	0	2	75	14	0	2	69	N	75	2.502	1
+Contig131_chr28_6481806_6483783	138	C	T	36.2	chr28	6481953	C	12	0	2	63	12	0	2	63	20	0	2	87	11	0	2	60	10	0	2	57	12	0	2	63	Y	10	0.387	0
+Contig141_chr28_10027332_10028242	780	T	G	74.8	chr28	10028095	T	10	0	2	57	11	0	2	60	14	0	2	69	10	0	2	57	7	0	2	48	9	0	2	54	Y	19	3.348	0
+Contig144_chr28_15468203_15470548	743	G	A	20.0	chr28	15468942	G	13	0	2	66	12	0	2	63	10	0	2	57	11	0	2	60	16	0	2	75	7	0	2	48	N	14	0.053	0
+Contig47_chr28_21311718_21312366	541	G	A	116.0	chr28	21312258	G	9	0	2	54	6	0	2	45	12	0	2	63	6	0	2	45	5	0	2	45	12	0	2	63	N	9	0.240	0
+Contig60_chr28_30197166_30197364	92	T	C	164.0	chr28	30197258	T	10	0	2	57	13	0	2	66	15	0	2	72	16	0	2	75	12	0	2	63	11	0	2	60	N	369	1.139	0
+Contig201_chr28_36339953_36341322	260	C	T	6.36	chr28	36340213	T	4	0	2	39	0	0	-1	0	2	0	2	33	2	0	2	33	3	0	2	36	4	0	2	39	N	4	0.183	0
+Contig175_chr28_36441165_36441915	68	T	C	3.83	chr28	36441234	T	4	4	1	15	6	0	2	45	12	0	2	63	15	0	2	72	6	0	2	45	9	0	2	54	N	4	1.610	2
+Contig29_chr29_4726399_4727143	559	A	T	163.0	chr29	4726955	A	15	0	2	72	18	0	2	81	18	0	2	81	16	0	2	75	11	0	2	60	14	0	2	72	Y	161	3.114	0
+Contig48_chr29_13129286_13130137	232	A	G	92.2	chr29	13129514	G	13	0	2	66	11	0	2	60	19	0	2	84	16	0	2	75	11	0	2	60	17	0	2	78	Y	337	2.581	1
+Contig64_chr29_15736891_15737257	344	T	C	40.4	chr29	15737233	C	1	0	2	30	0	0	-1	0	0	0	-1	0	2	0	2	33	0	0	-1	0	0	0	-1	0	N	58	+99.	0
+Contig33_chr29_17000374_17000921	71	C	T	48.6	chr29	17000441	-	4	0	2	39	9	0	2	54	12	0	2	66	10	0	2	57	7	0	2	48	4	0	2	39	N	26	5.491	0
+Contig34_chr29_17581796_17584016	2105	C	T	126.0	chr29	17583890	T	14	0	2	69	11	0	2	60	18	0	2	81	12	0	2	63	10	0	2	57	10	0	2	57	Y	22	2.208	0
+Contig19_chr29_20976080_20977761	1007	G	A	115.0	chr29	20977076	G	19	0	2	84	22	0	2	93	22	0	2	93	22	0	2	93	11	0	2	60	13	0	2	66	Y	4	1.915	0
+Contig51_chr29_21149853_21150467	266	C	T	146.0	chr29	21150118	C	12	0	2	63	12	0	2	63	23	0	2	96	14	0	2	69	13	0	2	66	10	0	2	57	Y	4	0.051	0
+Contig1_chr30_5992217_5993068	106	C	T	129.0	chr30	5992319	C	10	0	2	57	11	0	2	60	7	0	2	48	11	0	2	60	10	0	2	57	12	0	2	63	Y	76	1.079	0
+Contig1_chr30_8232878_8233406	402	C	T	127.0	chr30	8233264	C	8	0	2	51	19	0	2	84	16	0	2	75	18	0	2	81	10	0	2	57	14	0	2	69	Y	358	5.283	0
+Contig108_chr30_9436961_9437520	546	C	T	39.8	chr30	9437502	C	7	0	2	48	5	0	2	42	2	0	2	33	7	0	2	48	5	0	2	42	7	0	2	48	Y	64	+99.	0
+Contig165_chr30_25804389_25804926	190	T	C	126.0	chr30	25804592	C	3	0	2	36	8	0	2	51	7	0	2	48	10	0	2	57	7	0	2	48	4	0	2	39	Y	113	0.329	0
+Contig193_chr30_27495616_27496125	434	C	A	234.0	chr30	27496024	C	13	0	2	66	16	0	2	75	25	0	2	102	16	0	2	75	13	0	2	66	14	0	2	69	Y	76	2.621	0
+Contig114_chr30_33636712_33637208	34	C	T	142.0	chr30	33636744	C	7	0	2	48	4	1	2	20	6	0	2	45	6	0	2	45	3	4	1	29	5	0	2	42	Y	14	8.028	0
+Contig38_chr31_5164423_5166573	2074	C	T	134.0	chr31	5166501	T	13	0	2	66	10	0	2	57	17	0	2	78	11	0	2	60	17	0	2	78	10	0	2	57	Y	58	+99.	0
+Contig6_chr31_9649308_9650149	431	G	T	162.0	chr31	9649742	G	31	0	2	120	23	0	2	96	17	0	2	78	17	0	2	78	10	0	2	57	16	0	2	75	Y	98	2.200	0
+Contig85_chr31_12242872_12245082	38	G	C	92.4	chr31	12242910	G	1	0	2	30	6	0	2	45	9	0	2	54	8	0	2	51	5	0	2	42	9	0	2	54	N	2	2.340	0
+Contig7_chr31_12384974_12386400	305	C	T	69.6	chr31	12385267	C	6	0	2	45	10	0	2	57	11	0	2	60	11	0	2	60	9	0	2	54	12	0	2	63	Y	44	1.165	0
+Contig90_chr31_17267583_17267778	81	C	A	143.0	chr31	17267665	C	20	0	2	87	6	0	2	45	14	0	2	72	22	0	2	93	17	0	2	78	15	0	2	72	N	7	0.565	0
+Contig68_chr31_20000241_20000597	215	C	T	131.0	chr31	20000454	T	0	0	-1	0	0	0	-1	0	0	0	-1	0	0	0	-1	0	0	0	-1	0	0	0	-1	0	Y	5	3.383	1
+Contig137_chr31_23357653_23358568	885	G	A	119.0	chr31	23358545	G	5	0	2	42	3	0	2	36	3	0	2	36	2	0	2	33	3	0	2	36	4	0	2	39	Y	11	+99.	0
+Contig17_chr31_26433828_26434459	498	T	C	9.79	chr31	26434322	T	18	0	2	81	10	0	2	57	15	0	2	72	13	0	2	66	16	0	2	75	15	0	2	72	Y	137	4.814	0
+Contig9_chr32_19479532_19479735	12	A	G	20.7	chr32	19479544	A	1	0	2	30	2	0	2	33	1	0	2	30	5	0	2	42	3	0	2	36	3	0	2	36	N	17	+99.	0
+Contig30_chr32_25902721_25905783	208	C	G	162.0	chr32	25902927	G	11	0	2	60	13	0	2	66	11	0	2	60	12	0	2	63	7	0	2	48	11	0	2	60	Y	145	0.322	2
+Contig7_chr32_27789513_27789926	20	G	A	7.19	chr32	27789530	A	0	0	-1	0	4	0	2	39	4	0	2	39	4	0	2	39	2	0	2	33	6	0	2	45	Y	14	+99.	0
+Contig42_chr32_38900713_38901320	320	A	G	134.0	chr32	38901021	T	12	0	2	63	10	0	2	57	9	11	1	104	5	0	2	42	19	0	2	84	7	6	1	56	Y	71	0.165	0
+Contig18_chr33_22207246_22209159	1363	G	T	51.5	chr33	22208619	-	16	0	2	75	8	0	2	51	11	0	2	60	10	0	2	57	15	0	2	72	12	0	2	63	Y	59	2.560	0
+Contig104_chr33_22483642_22484187	424	C	T	140.0	chr33	22484054	T	13	0	2	66	16	0	2	75	9	0	2	54	15	0	2	72	13	0	2	66	10	0	2	57	Y	36	0.404	0
+Contig170_chr33_26189421_26189940	292	T	C	98.4	chr33	26189703	T	21	0	2	90	13	0	2	66	15	0	2	72	13	0	2	66	19	0	2	84	13	0	2	66	Y	23	0.307	0
+Contig113_chr34_13341080_13341643	236	C	T	90.7	chr34	13341316	C	4	0	2	39	2	0	2	33	8	0	2	51	4	0	2	39	8	0	2	51	3	0	2	36	Y	47	0.412	3
+Contig405_chr34_14415672_14415979	59	A	G	36.2	chr34	14415731	G	8	0	2	51	2	0	2	33	8	0	2	51	6	0	2	48	3	0	2	36	7	0	2	48	Y	45	0.405	1
+Contig21_chr34_16422980_16425681	2009	G	A	19.4	chr34	16424960	G	0	0	-1	0	0	0	-1	0	0	0	-1	0	5	0	2	42	0	0	-1	0	0	0	-1	0	Y	28	0.196	0
+Contig41_chr34_16544482_16545449	46	T	C	102.0	chr34	16544523	T	5	0	2	42	11	0	2	60	6	0	2	45	0	2	0	3	7	0	2	48	8	0	2	51	Y	215	1.156	0
+Contig8_chr34_18474513_18475673	1122	C	A	129.0	chr34	18475628	A	8	0	2	51	15	0	2	72	13	0	2	66	17	0	2	78	13	0	2	66	6	0	2	45	Y	61	0.123	2
+Contig152_chr34_31794848_31795540	242	G	A	93.2	chr34	31795093	G	11	0	2	60	24	0	2	99	17	0	2	78	15	0	2	72	18	0	2	81	17	0	2	78	Y	123	2.780	0
+Contig28_chr34_41708848_41712034	1381	A	G	78.2	chr34	41710232	A	11	0	2	60	17	0	2	78	15	0	2	72	16	0	2	75	15	0	2	72	14	0	2	69	Y	236	0.234	0
+Contig85_chr34_42798284_42800584	1845	C	T	171.0	chr34	42800126	T	5	0	2	42	7	0	2	48	6	0	2	45	7	0	2	48	6	0	2	45	2	0	2	33	Y	5	2.787	0
+Contig47_chr35_3666773_3667898	348	G	T	124.0	chr35	3667121	G	9	0	2	54	20	0	2	87	18	0	2	81	15	0	2	72	12	0	2	63	14	0	2	69	Y	285	0.235	0
+Contig195_chr35_15722500_15722741	205	G	A	4.08	chr35	15722718	G	3	0	2	36	5	0	2	42	1	0	2	30	6	0	2	45	1	0	2	30	1	0	2	30	N	43	+99.	0
+Contig101_chr35_19513178_19513697	62	C	T	112.0	chr35	19513238	C	12	0	2	63	7	0	2	48	13	0	2	66	7	0	2	48	5	0	2	42	8	0	2	51	N	115	3.135	0
+Contig19_chr35_23887144_23888282	90	C	A	10.1	chr35	23887242	-	3	3	1	12	4	4	1	19	8	6	1	37	4	3	1	11	8	3	2	7	9	3	2	11	Y	105	0.199	0
+Contig47_chr35_24382042_24382526	33	G	A	87.0	chr35	24382076	G	5	0	2	42	4	0	2	39	6	0	2	45	7	0	2	48	4	0	2	39	2	0	2	33	Y	71	+99.	0
+Contig77_chr35_24796947_24797172	65	A	G	52.1	chr35	24797009	A	7	0	2	48	5	0	2	42	8	0	2	51	6	0	2	45	12	0	2	63	10	0	2	57	N	11	1.401	3
+Contig74_chr35_25394343_25394813	303	A	T	221.0	chr35	25394646	G	23	0	2	96	15	0	2	72	25	0	2	105	7	7	1	49	18	0	2	81	16	0	2	75	Y	58	4.298	0
+Contig5_chr36_4562983_4563634	343	C	T	151.0	chr36	4563324	T	20	0	2	87	20	0	2	87	23	0	2	96	24	0	2	99	9	0	2	54	8	0	2	51	Y	40	1.169	0
+Contig75_chr36_7885319_7885588	53	G	A	25.7	chr36	7885372	G	10	0	2	57	8	0	2	51	13	0	2	66	7	0	2	48	4	0	2	39	7	0	2	48	N	7	2.653	0
+Contig184_chr36_18956191_18958552	187	A	G	11.5	chr36	18956371	G	10	0	2	57	11	0	2	60	21	0	2	90	14	0	2	69	7	0	2	48	4	0	2	39	N	278	1.434	2
+Contig12_chr36_21557176_21557828	513	T	A	159.0	chr36	21557695	A	11	0	2	60	14	0	2	69	21	0	2	90	12	0	2	63	15	0	2	72	11	0	2	60	Y	55	0.222	0
+Contig2_chr36_22436067_22436794	653	C	T	73.0	chr36	22436730	C	11	0	2	60	16	0	2	75	13	0	2	66	11	0	2	60	21	0	2	90	21	0	2	90	Y	9	0.534	0
+Contig133_chr36_32954045_32955409	136	A	G	116.0	chr36	32954182	A	16	0	2	75	15	0	2	72	20	0	2	87	11	0	2	60	18	0	2	81	13	0	2	66	Y	74	3.772	1
+Contig53_chr37_6665763_6665919	116	C	T	111.0	chr37	6665875	C	9	0	2	54	9	0	2	54	5	0	2	42	9	0	2	54	8	0	2	51	10	0	2	57	N	15	10.875	1
+Contig42_chr37_9589176_9591269	252	G	A	25.1	chr37	9589430	G	10	0	2	40	13	0	2	66	18	0	2	81	21	0	2	90	9	0	2	54	17	0	2	78	N	67	1.170	2
+Contig2_chr37_17134963_17136513	1140	A	C	158.0	chr37	17136092	A	14	0	2	69	24	0	2	99	17	0	2	78	16	0	2	75	15	0	2	75	13	0	2	66	Y	12	0.053	1
+Contig18_chr37_17147806_17149851	291	T	G	112.0	chr37	17148084	T	4	6	1	45	16	0	2	75	17	0	2	78	14	0	2	69	22	0	2	93	13	0	2	66	Y	41	4.442	0
+Contig64_chr37_17606895_17607534	565	C	T	30.2	chr37	17607439	A	9	0	2	54	16	0	2	75	20	0	2	87	14	0	2	69	16	0	2	75	10	0	2	57	N	20	1.622	0
+Contig126_chr37_21587881_21590621	373	G	T	132.0	chr37	21588256	G	11	0	2	60	11	0	2	60	23	0	2	96	12	0	2	63	8	0	2	51	18	0	2	81	Y	12	0.549	0
+Contig2_chr37_31197993_31198256	182	C	T	39.6	chr37	31198171	T	6	0	2	45	10	0	2	57	7	0	2	48	9	0	2	54	10	0	2	57	12	0	2	63	N	2	0.595	0
+Contig46_chr37_31852376_31853555	825	A	G	111.0	chr37	31853191	G	19	0	2	84	14	0	2	69	15	0	2	72	7	0	2	48	8	0	2	51	16	0	2	75	Y	17	0.128	1
+Contig7_chr38_12217200_12218387	1163	A	T	44.4	chr38	12218353	A	11	0	2	60	13	0	2	66	17	0	2	78	10	0	2	57	11	0	2	60	11	0	2	60	Y	67	+99.	0
+Contig15_chr38_12282020_12282253	150	C	T	156.0	chr38	12282164	A	17	0	2	78	11	0	2	60	19	0	2	84	14	0	2	69	5	0	2	42	14	0	2	69	Y	26	2.952	1
+Contig4_chr38_14807432_14807747	275	A	G	36.5	chr38	14807715	G	1	0	2	30	2	0	2	33	2	0	2	33	4	0	2	39	1	0	2	30	0	0	-1	0	Y	28	+99.	1
+Contig6_chr38_16185744_16186110	325	A	G	74.9	chr38	16186061	A	5	0	2	42	3	0	2	36	9	0	2	54	7	0	2	48	1	0	2	30	12	0	2	63	Y	40	+99.	0
+Contig265_chrX_2689247_2689484	114	C	G	103.0	chrX	2689356	C	11	0	2	60	9	0	2	54	13	0	2	66	16	0	2	75	14	0	2	69	10	0	2	57	N	2	9.232	1
+Contig122_chrX_6026976_6027327	330	C	T	79.4	chrX	6027303	C	3	0	2	36	3	0	2	36	3	0	2	36	4	0	2	39	3	0	2	36	6	0	2	45	Y	30	+99.	0
+Contig15_chrX_15659909_15660340	15	A	C	14.9	chrX	15659924	C	1	0	2	30	1	0	2	30	3	0	2	36	6	0	2	45	2	0	2	33	0	0	-1	0	Y	216	+99.	1
+Contig12_chrX_23243561_23244412	479	C	G	67.7	chrX	23244037	C	2	0	2	33	4	2	2	8	2	6	1	43	7	0	2	48	6	0	2	45	4	0	2	39	Y	208	1.620	0
+Contig113_chrX_26287829_26288398	385	C	T	59.6	chrX	26288213	C	9	0	2	54	9	0	2	54	17	0	2	78	11	0	2	60	3	8	1	44	4	0	2	39	N	13	0.077	0
+Contig186_chrX_29118735_29118939	192	G	A	7.01	chrX	29118931	G	1	0	2	30	7	0	2	48	4	0	2	39	5	0	2	42	8	0	2	51	4	0	2	39	N	50	+99.	0
+Contig237_chrX_31256648_31257654	165	T	A	246.0	chrX	31256814	T	7	0	2	48	23	0	2	96	19	0	2	84	17	0	2	78	14	0	2	69	8	0	2	51	Y	37	1.481	0
+Contig25_chrX_40729418_40730089	332	C	T	31.2	chrX	40729745	C	0	0	-1	0	2	0	2	33	4	0	2	39	5	0	2	42	3	0	2	36	3	0	2	36	Y	34	0.212	0
+Contig90_chrX_57430715_57431566	548	C	T	116.0	chrX	57431266	T	9	0	2	54	18	0	2	81	13	0	2	66	14	0	2	69	8	0	2	54	7	0	2	48	Y	261	0.154	1
+Contig133_chrX_84833782_84834125	182	G	A	69.7	chrX	84833962	G	5	0	2	42	18	0	2	81	12	0	2	63	19	0	2	84	6	3	1	27	7	0	2	48	N	619	0.278	0
+Contig129_chrX_90586053_90586467	135	A	T	120.0	chrX	90586195	A	1	0	2	30	6	0	2	45	8	0	2	51	5	0	2	42	1	0	2	30	2	0	2	33	N	637	0.245	0
+Contig125_chrX_93319363_93320877	349	A	C	145.0	chrX	93319721	A	4	0	2	39	6	0	2	45	11	0	2	60	10	0	2	57	13	0	2	66	6	0	2	45	Y	59	1.686	0