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diff dpmix.xml @ 26:91e835060ad2

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Updates to Admixture, Aggregate Individuals, and Restore Attributes to support gd_genotype
author Richard Burhans <burhans@bx.psu.edu>
date Mon, 03 Jun 2013 12:29:29 -0400
parents cba0d7a63b82
children 8997f2ca8c7a
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--- a/dpmix.xml	Wed May 29 13:49:19 2013 -0400
+++ b/dpmix.xml	Mon Jun 03 12:29:29 2013 -0400
@@ -42,7 +42,7 @@
     <param name="ap2_input" type="data" format="gd_indivs" label="Ancestral population 2 individuals" />
     <param name="p_input" type="data" format="gd_indivs" label="Potentially admixed individuals" />
 
-    <param name="switch_penalty" type="float" min="0" value="10" label="Genotype switch penalty" help="Note: typically between 10 and 100."/>
+    <param name="switch_penalty" type="float" min="0" value="10" label="Genotype switch penalty" help="Note: Depends on the density of SNPs.  For instance, with 50,000 SNPs in a vertebrate genome, 1.0 might be appropriate, with millions of SNPs, a value between 10 and 100 might be reasonable."/>
   </inputs>
 
   <outputs>