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diff restore_attributes.xml @ 26:91e835060ad2

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Updates to Admixture, Aggregate Individuals, and Restore Attributes to support gd_genotype
author Richard Burhans <burhans@bx.psu.edu>
date Mon, 03 Jun 2013 12:29:29 -0400
parents 95a05c1ef5d5
children
line wrap: on
line diff
--- a/restore_attributes.xml	Wed May 29 13:49:19 2013 -0400
+++ b/restore_attributes.xml	Mon Jun 03 12:29:29 2013 -0400
@@ -1,26 +1,40 @@
-<tool id="gd_restore_attributes" name="Restore Attributes" version="1.0.0">
-  <description>: Fill in missing properties for a gd_snp dataset</description>
+<tool id="gd_restore_attributes" name="Restore Attributes" version="1.1.0">
+  <description>: Fill in missing properties for a gd_snp or gd_genotype dataset</description>
 
   <command interpreter="python">
     cp.py "$dst" "$output"
   </command>
 
   <inputs>
-    <param name="src" type="data" format="gd_snp" label="SNP dataset to copy attributes from" />
-    <param name="dst" type="data" format="gd_snp" label="SNP dataset to receive attributes" />
+    <conditional name="input_type">
+      <param name="choice" type="select" format="integer" label="Input format">
+        <option value="0" selected="true">gd_snp</option>
+        <option value="1">gd_genotype</option>
+      </param>
+
+      <when value="0">
+        <param name="input" type="data" format="gd_snp" label="SNP dataset to copy attributes from" />
+        <param name="dst" type="data" format="gd_snp" label="SNP dataset to receive attributes" />
+      </when>
+      <when value="1">
+        <param name="input" type="data" format="gd_genotype" label="Genotype dataset to copy attributes from" />
+        <param name="dst" type="data" format="gd_genotype" label="Genotype dataset to receive attributes" />
+      </when>
+    </conditional>
   </inputs>
 
   <outputs>
-    <data name="output" format="gd_snp" metadata_source="src" />
+    <data name="output" format="input" format_source="input" metadata_source="input" />
   </outputs>
 
   <help>
 
 **Dataset formats**
 
-All of the input and output datasets are in gd_snp_ format.  (`Dataset missing?`_)
+All of the input and output datasets are in gd_snp_ or gd_genotype_ format.  (`Dataset missing?`_)
 
 .. _gd_snp: ./static/formatHelp.html#gd_snp
+.. _gd_genotype: ./static/formatHelp.html#gd_genotype
 .. _Dataset missing?: ./static/formatHelp.html
 
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